diff --git a/00.pipelines/func_preproc.sh b/00.pipelines/func_preproc.sh index 902904b..0836d11 100755 --- a/00.pipelines/func_preproc.sh +++ b/00.pipelines/func_preproc.sh @@ -164,14 +164,6 @@ do ${scriptdir}/12.func_grayplot.sh -func_in ${bold} -fdir ${fdir} -anat_in ${anat} \ -mref ${sbref} -aseg ${aseg} -polort 4 -tmp ${tmp} - bold_in=${bold%_*} - echo "mv ${bold_in}_gp_PVO.png ${fdir}/$( basename ${bold_in} )_raw_gp_PVO.png" - mv ${bold_in}_gp_PVO.png ${fdir}/$( basename ${bold_in} )_raw_gp_PVO.png - echo "mv ${bold_in}_gp_IJK.png ${fdir}/$( basename ${bold_in} )_raw_gp_IJK.png" - mv ${bold_in}_gp_IJK.png ${fdir}/$( basename ${bold_in} )_raw_gp_IJK.png - echo "mv ${bold_in}_gp_peel.png ${fdir}/$( basename ${bold_in} )_raw_gp_peel.png" - mv ${bold_in}_gp_peel.png ${fdir}/$( basename ${bold_in} )_raw_gp_peel.png - done echo "************************************" @@ -255,13 +247,6 @@ do ${scriptdir}/12.func_grayplot.sh -func_in ${boldsource} -fdir ${fdir} -anat_in ${anat} \ -mref ${sbref} -aseg ${aseg} -polort 4 -tmp ${tmp} - echo "mv ${bold}_gp_PVO.png ${fdir}/00.${boldout}_native_preprocessed_gp_PVO.png" - mv ${bold}_gp_PVO.png ${fdir}/00.${boldout}_native_preprocessed_gp_PVO.png - echo "mv ${bold}_gp_IJK.png ${fdir}/00.${boldout}_native_preprocessed_gp_IJK.png" - mv ${bold}_gp_IJK.png ${fdir}/00.${boldout}_native_preprocessed_gp_IJK.png - echo "mv ${bold}_gp_peel.png ${fdir}/00.${boldout}_native_preprocessed_gp_peel.png" - mv ${bold}_gp_peel.png ${fdir}/00.${boldout}_native_preprocessed_gp_peel.png - done [[ ${debug} == "yes" ]] && set +x diff --git a/02.func_preproc/12.func_grayplot.sh b/02.func_preproc/12.func_grayplot.sh index 08859e9..dee8d31 100755 --- a/02.func_preproc/12.func_grayplot.sh +++ b/02.func_preproc/12.func_grayplot.sh @@ -128,13 +128,13 @@ tmpseg=${tmp}/$( basename ${aseg} )_seg2sbref #Plot some grayplots! 3dGrayplot -input ${func_in}.nii.gz -mask ${tmpseg}.nii.gz \ - -prefix ${tmp}/${func}_gp_PVO.png -dimen 1800 1200 \ + -prefix ${func}_gp_PVO.png -dimen 1800 1200 \ -polort ${polort} -pvorder -percent -range 3 3dGrayplot -input ${func_in}.nii.gz -mask ${tmpseg}.nii.gz \ - -prefix ${tmp}/${func}_gp_IJK.png -dimen 1800 1200 \ + -prefix ${func}_gp_IJK.png -dimen 1800 1200 \ -polort ${polort} -ijkorder -percent -range 3 3dGrayplot -input ${func_in}.nii.gz -mask ${tmpseg}.nii.gz \ - -prefix ${tmp}/${func}_gp_peel.png -dimen 1800 1200 \ + -prefix ${func}_gp_peel.png -dimen 1800 1200 \ -polort ${polort} -peelorder -percent -range 3 cd ${cwd} \ No newline at end of file