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data preprocessing: remove 2 lines that align spots with tissue position #13

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smcclatchy opened this issue Aug 13, 2024 · 1 comment

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smcclatchy commented Aug 13, 2024

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smcclatchy assigned dmgatti

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dmgatti commented Aug 13, 2024

In Data preprocessing, remove:

tissue_position <- tissue_position[Cells(raw_st),]
stopifnot(rownames(tissue_position) == Cells(raw_st))

In Normalization, remove:
stopifnot(all(Cells(filter_st) %in% rownames(spot_metadata)))
spot_metadata <- spot_metadata[Cells(filter_st),]

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