CITATION.cff

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cff-version: 1.2.0
title: Spatial Transcriptomics
message: >-
  If you use this software, please cite it using the
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type: software
authors:
  - given-names: Antonios
    family-names: Somarakis
    affiliation: The Jackson Laboratory
    email: antonios.somarakis@jax.org
    orcid: 'https://orcid.org/0000-0003-1020-1562'
  - given-names: Brian
    family-names: White
    email: brian.white@jax.org
    affiliation: The Jackson Laboratory
    orcid: 'https://orcid.org/0000-0002-2954-4410'
  - given-names: Daniel
    family-names: Gatti
    email: daniel.gatti@jax.org
    affiliation: The Jackson Laboratory
    orcid: 'https://orcid.org/0000-0003-0667-9926'
  - given-names: Elaheh
    family-names: Alizadeh
    email: elaheh.alizadeh@jax.org
    affiliation: The Jackson Laboratory
    orcid: 'https://orcid.org/0000-0003-4046-1226'
  - given-names: Susan
    family-names: McClatchy
    email: susan.mcclatchy@jax.org
    affiliation: The Jackson Laboratory
    orcid: 'https://orcid.org/0000-0003-3219-2177'
  - given-names: Gary
    name-particle: A
    family-names: Churchill
    email: gary.churchill@jax.org
    affiliation: The Jackson Laboratory
    orcid: 'https://orcid.org/0000-0001-9190-9284'
repository-code: 'https://github.com/smcclatchy/spatial-transcriptomics'
url: 'http://smcclatchy.github.io/spatial-transcriptomics/'
abstract: >
  Spatially resolved transcriptomics is a cutting-edge
  molecular profiling technology that measures transcript
  expression and position within a tissue. This course will
  teach you how to analyze spatial transcriptomics data
  generated by the Visium 10X platform. By the end of this
  course, you will be able to:


  1. Describe different spatial transcriptomics technologies
  and the best uses of each.

  2. Identify important elements for good experimental
  design.

  3. Analyze spatial transcriptomics data, including quality
  control, transcript quantification, and cell-type
  assignment within regions.
keywords:
  - spatial-transcriptomics
  - 10X-genomics-visium
license: CC-BY-4.0