pipeline.json

{
  "Setup": {
    "description": "",
    "random_seed": null
  },
  "Dataset": {
    "class": "modules.DataLoader",
    "args": {
      "path_to_data": "/home/slipnitskaya/PycharmProjects/piRNA-analysis/data/transposons_nunq5.pkl"
    }
  },
  "Transforms": [
    {
      "class": "modules.Scaling",
      "args": {
        "new_min": 1e-16,
        "new_max": 1.0,
        "axis": -1
      }
    },
    {
      "class": "modules.HistBuilder",
      "args": {"n_bins": 15}
    }
  ],
  "Model": {
    "class": "modules.CorrelationModel",
    "args": {"n_bins": 15}
  },
  "Metric": {
    "class": "modules.DummyMetric",
    "args": {}
  },
  "Saver": {
    "class": "modules.PredictionHists",
    "args": {
      "use_raw": true,
      "filename": "transposons_nunq5",
      "n_bins": 15,
      "path_to_orig": "/home/slipnitskaya/PycharmProjects/piRNA-analysis/data/transposons_nunq5.pkl",
      "n_bm": null
    }
  }
}