diff --git a/E_corrs.m b/E_corrs.m index 473f734..34222d3 100644 --- a/E_corrs.m +++ b/E_corrs.m @@ -7,7 +7,7 @@ %% -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) numClusters = 4; diff --git a/T_sweep_sps.m b/T_sweep_sps.m index d7e8dfa..4504c59 100644 --- a/T_sweep_sps.m +++ b/T_sweep_sps.m @@ -12,7 +12,7 @@ %% set inputs numClusters = 4; -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) diff --git a/ami_calc.m b/ami_calc.m index bf2052f..96b254b 100644 --- a/ami_calc.m +++ b/ami_calc.m @@ -5,7 +5,7 @@ basedir = '/Users/sps253/Documents/energy_landscape'; cd(basedir); -split = 'psilo' +split = 'main' load(fullfile(['data/',split,'.mat'])) diff --git a/complexity_measures.m b/complexity_measures.m index e6755dd..d582ab4 100644 --- a/complexity_measures.m +++ b/complexity_measures.m @@ -8,7 +8,7 @@ savedir = fullfile(basedir,'results','example');mkdir(savedir); %% set inputs -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) numClusters = 4; diff --git a/countclusters.m b/countclusters.m index ee905f0..6c9c81b 100644 --- a/countclusters.m +++ b/countclusters.m @@ -7,7 +7,7 @@ %% set inputs -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) savedir = fullfile(basedir,'results','example');mkdir(savedir); % set save directory diff --git a/elbow_sps.m b/elbow_sps.m index 0af3e8c..59974e6 100644 --- a/elbow_sps.m +++ b/elbow_sps.m @@ -9,7 +9,7 @@ basedir = '/Users/sps253/Documents/energy_landscape'; cd(basedir); -split = 'psilo' +split = 'main' savedir = fullfile(basedir,'results','example');mkdir(savedir); load(fullfile(basedir,['data/',split,'.mat'])) % make sure this file matches the split you want to run below diff --git a/m5HTcomparisons.m b/m5HTcomparisons.m index c43648a..b2cc5b3 100644 --- a/m5HTcomparisons.m +++ b/m5HTcomparisons.m @@ -5,7 +5,7 @@ %% set inputs numClusters = 4; -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) T = 0.001 % set time scale parameters based on values from paper diff --git a/plotcentroidsSPS.m b/plotcentroidsSPS.m index bbeeb0a..bf82479 100644 --- a/plotcentroidsSPS.m +++ b/plotcentroidsSPS.m @@ -9,7 +9,7 @@ %% plot numClusters = 4; -split='psilo' +split='main' load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat'])) diff --git a/repeatkmeans_sps.m b/repeatkmeans_sps.m index 210c735..66c9159 100644 --- a/repeatkmeans_sps.m +++ b/repeatkmeans_sps.m @@ -6,7 +6,7 @@ %% load data -split = 'psilo' %%<- options: main, gsr, sch, music, psilo +split = 'main' %%<- options: main, gsr, sch, music, psilo load(fullfile(['data/',split,'.mat'])) diff --git a/si_scripts/energy_as_increasing_k.m b/si_scripts/energy_as_increasing_k.m index f23bba6..5bd7d58 100644 --- a/si_scripts/energy_as_increasing_k.m +++ b/si_scripts/energy_as_increasing_k.m @@ -28,7 +28,7 @@ %% load partitions from elbow plot maxk = round(sqrt(TR)) -1; %k^2 must be less than TR to capture all transitions -k_rng=2:14; +k_rng=2:maxk; C_sub = [repmat([1 0 0],nsubjs,1); repmat([0 0 0],nsubjs,1)]; C_avg = [[1 0 0];[0 0 0]]; diff --git a/spin_receptor_map.m b/spin_receptor_map.m index 601bb09..e71da0d 100644 --- a/spin_receptor_map.m +++ b/spin_receptor_map.m @@ -8,7 +8,7 @@ savedir = fullfile(basedir,'results','example');mkdir(savedir); % set save directory %% -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) numClusters=4; T=0.001; diff --git a/subcentroids.m b/subcentroids.m index 6f86160..04fb217 100644 --- a/subcentroids.m +++ b/subcentroids.m @@ -8,7 +8,7 @@ %% load BOLD data -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) numClusters=4; diff --git a/subj_energy.m b/subj_energy.m index b314b7c..24a9104 100644 --- a/subj_energy.m +++ b/subj_energy.m @@ -10,7 +10,7 @@ T = 0.001 % set time scale parameters based on values from T_sweep_sps.m numClusters=4; -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) load(['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat'],'partition','centroids','clusterNames'); %make sure file matches centroids you want to initialize from diff --git a/systems_plot_sps.m b/systems_plot_sps.m index 4f62130..6cc8888 100644 --- a/systems_plot_sps.m +++ b/systems_plot_sps.m @@ -5,7 +5,7 @@ addpath(genpath('code')) %% set inputs numClusters = 4; -split='psilo' +split='main' savedir = fullfile(basedir,'results','example');mkdir(savedir); % set save directory load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat'])) diff --git a/transProbs.m b/transProbs.m index 51d9fcf..c317ae2 100644 --- a/transProbs.m +++ b/transProbs.m @@ -6,7 +6,7 @@ %% set inputs numClusters = 4; -split='psilo' +split='main' load(fullfile(['data/',split,'.mat'])) savedir = fullfile(basedir,'results','example');mkdir(savedir); % set save directory load(fullfile(savedir,['Partition_bp',num2str(split),'_k',num2str(numClusters),'.mat']))