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sgoldenlab/simba
Simba ROI time to first zone entry

We are running some experiments where we need to measure the time in the video before the animal enters a zone. If possible, it would be great to have an ROI analysis option that provides time of first ...
  • blaingvt
  • 4
  • Opened 
    21 hours ago
  • #414

sgoldenlab/simba
ROI WARNINGS

Describe the bug when analyzing machine prediction by RROI the terminal gives me: SIMBA WARNING: ROIWarning: ROI named bottom of shape type Circle not found for video video__9808_250203_empty. Skipping ...
  • Enricocloud
  • 7
  • Opened 
    yesterday
  • #413

sgoldenlab/simba
Low accuracy when reusing models

I have trained model using data from Project A. But when I tried to use the same model for Project B I got really low accuracies. The two projects are almost the same, the only difference was the time ...
  • hdsliu
  • 3
  • Opened 
    7 days ago
  • #412

sgoldenlab/simba
SimBA crashing when saving ROIs

When I draw an ROI and then try to press save SimBA freezes and crashes. When I press save with no ROI drawn, it logs that the file s ROI s were saved (0 ROI s saved). So the button seems to work. This ...
  • blaingvt
  • 5
  • Opened 
    26 days ago
  • #411

sgoldenlab/simba
Update citation information

Hi @sronilsson, I didn t see your Nature publication last year. Congratulations 🚀! I m about to cite you in a resubmission. Your github page lists your 2020 biorxiv to cite. I assume the published version ...
  • rfkova
  • 3
  • Opened 
    27 days ago
  • #410

sgoldenlab/simba
Append ROI data

Not able to append ROI data. Task has 1 animal in a maze spontaneous alternation, and I am trying to calculate ROI directionality but keep getting the following error: Exception in Tkinter callback Traceback ...
  • aurquieta
  • 7
  • Opened 
    29 days ago
  • #409

sgoldenlab/simba
SLEAP csv import error for multiple identities

Describe the bug I created a script that filled in missing identities and corrected jumps on a csv file from SLEAP and exported it in the same format as released by SLEAP. I attempted to import the file ...
  • JuneAMeans
  • 6
  • Opened 
    on Jan 24
  • #408

sgoldenlab/simba
simba does not start

I successfully installed simba with venv to get Pytho3.10 and with Anaconda to get Python 3.6 I tried to start simba by simba and press enter, but nothing happens except at the task manager simba.exe is ...
  • Bioinfo-Rafael
  • 5
  • Opened 
    on Jan 22
  • #407

sgoldenlab/simba
Need to design ROIs recursively on a project with >1000 video

Dear SIMBA creator. Thank you for your work on SIMBA. I have a big project with more than 1000 videos acquired in standardized conditions (open field). I leave the GUI and I work on jupyter notebook to ...
  • DavidBarriere
  • 20
  • Opened 
    on Jan 18
  • #406

sgoldenlab/simba
Discrepency between aggregated movement data and ROI movement data

Describe the bug I am having an issue where the results of the Analyze ROI Data: Aggregates (movement_log.csv) and Analyze distances/velocities: aggregates (ROI_movement_data.csv) do not seem to align. ...
  • tlancaster6
  • 8
  • Opened 
    on Jan 17
  • #405
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