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images
- installation
- roi_tutorial
- 4videos.gif
- Align_shapes.gif
- Analyze_1.PNG
- Analyze_2.PNG
- Analyze_3.PNG
- Analyze_4.PNG
- Apply_shapes_other_video.gif
- Archive1.JPG
- Archive_2.JPG
- Archive_3.JPG
- BORIS_1.png
- BORIS_2.png
- BORIS_3.png
- BORIS_4.png
- BORIS_5.png
- BORIS_99.png
- Bp_thresh_ROI_1.png
- Bp_thresh_ROI_2.png
- BtWGaNP_classificationReport.png
- BtWGaNP_feature_bars.png
- BtWGaNP_feature_importance_log.csv
- BtWGaNP_prediction_learning_curve.csv
- BtWGaNP_prediction_permutations_importances.csv
- BtWGaNP_prediction_precision_recall.csv
- BtWGaNP_severity.csv
- BtWGaNP_tree.pdf
- Button4.PNG
- Button5.PNG
- Capturesss.JPG
- Change_ROI_shapes.gif
- Change_frame.gif
- Change_shape_attr.gif
- Circle_draw.gif
- Comutation_time_Xeon.JPG
- Comutation_time_i9.JPG
- Create_pose_config_1.png
- Create_project_1.PNG
- Create_project_10.jpg
- Create_project_11.jpg
- Create_project_2.PNG
- Create_project_2_new.PNG
- Create_project_3.PNG
- Create_project_4.PNG
- DLC_menu2.PNG
- DLC_menu_pose.png
- DPK1.png
- DPK2.png
- DPK_2.png
- DPK_3.png
- DPK_4.png
- DPK_5.png
- DPK_6.png
- DPK_7.png
- DPK_8.png
- DPK_9.png
- DPK_annotator.PNG
- DPK_import.PNG
- DPK_menu_predict.PNG
- DR_2.PNG
- DR_folder.PNG
- Dash_1.JPG
- Dash_2.JPG
- Dash_3.JPG
- Dash_4.JPG
- Dash_6.JPG
- Dash_7.JPG
- Dash_8.JPG
- Dash_gif_01.gif
- Dash_gif_02.gif
- Dash_gif_03.gif
- Dash_logo.png
- Delete_all_shapes.gif
- Delete_specific_shape.gif
- Dependencies.png
- Direct_10.JPG
- Directionality_97.PNG
- Directionality_98.PNG
- Directionality_99.PNG
- Directionality_ROI.PNG
- Draw_circle.gif
- Draw_polygon.gif
- Draw_pose.gif
- Draw_rectangle.gif
- Duplicate_ROI.gif
- Duplicate_dropdown.png
- Extract_features_SimBA.PNG
- FSCTT_3.png
- FSTTC_1.png
- FSTTC_11.png
- FSTTC_12.png
- FSTTC_13.png
- FSTTC_2.png
- FSTTC_violin.png
- Flow_chart.png
- Funnel_directionality.gif
- GUI.png
- HDBSCAN_scatter.PNG
- HDBSCAN_tree.PNG
- Heatmap_loc_example.png
- Heatmap_parameters.PNG
- Import_data_create_project_new_1.png
- Import_data_create_project_new_2.png
- Import_data_create_project_new_3.png
- Import_data_create_project_new_4.png
- Import_videos.PNG
- InkedCreate_project_12_LI.jpg
- Interpolation_0821.png
- Interpolation_0821_2.png
- Interpolation_0821_3.png
- Interpolation_comparison.png
- Kleinberg_1.png
- Kleinberg_10.png
- Label_behavior.png
- Lines_directionality.gif
- Load_ROI_table.JPG
- Load_project2_SimBA.PNG
- Load_project_SimBA.PNG
- MR_1.png
- MR_2.png
- MR_3.png
- MR_4.png
- MR_5.png
- Move_shapes.gif
- Multi_1.png
- Multi_animal2.jpg
- Multi_animal3.jpg
- Multi_animal4.jpg
- Multi_animal5.jpg
- Multi_animal6.jpg
- Multi_animal7.jpg
- Multi_crop.gif
- Multi_crop_1.JPG
- Multi_crop_example.gif
- New_pose_config.gif
- New_pose_config_image.PNG
- OSF_1.PNG
- OSF_2.PNG
- OSF_folder_structure_031820.jpg
- PCA.PNG
- Polygon_draw.gif
- Pose_config_2.PNG
- Pose_config_image_3.PNG
- Pose_config_image_4.PNG
- Pose_config_image_5.PNG
- Project_config_100.PNG
- Project_config_99.PNG
- Pseudo_1.PNG
- ROIAnalysisTimeBinsPopUp.png
- ROI_022021.png
- ROI_022021_2.png
- ROI_0320_1.png
- ROI_0320_2.png
- ROI_1.png
- ROI_11.PNG
- ROI_OF.gif
- ROI_analyze1.jpg
- ROI_append.JPG
- ROI_circles.JPG
- ROI_delete.png
- ROI_directionality.gif
- ROI_img1.png
- ROI_menu.JPG
- ROI_move.JPG
- ROI_movement_data.png
- ROI_polygons.JPG
- ROI_rectangle.JPG
- ROI_table.png
- ROI_visualization_1.gif
- ROI_visualization_2.gif
- Rectangle_draw.gif
- Roi_time_1.png
- Roi_time_2.png
- Roi_time_3.png
- Rtx3090_1.png
- SHAP0.png
- SHAP1.png
- SHAP2.png
- SHAP3.png
- SHAP4.png
- SHAP5.png
- SHAP6.png
- SHAP_05_10.png
- Screen Recording 2023-04-01 at 12.50.04 PM_converted_fps_10.mp4
- Screen Recording 2023-04-01 at 12.50.04 PM_converted_fps_10_fps_5.gif
- Screen Shot 2022-02-11 at 9.11.24 AM.png
- Settings1.png
- SimBA_logo_4.jpg
- SimBA_pallettes.PNG
- SimBA_tkinter.png
- SimBA_tkinter_2.png
- SimBA_tkinter_3.png
- Testing_Video_3_short.gif
- Together_2.gif
- Tools_menu_1.png
- UD_1.png
- UD_2.png
- UMAP.PNG
- Untitled.png
- Validate_0821.png
- Vis_build.JPG
- Vis_build_2.JPG
- Visualization_menu_2.PNG
- Visualize_01.PNG
- Visualize_02.PNG
- Visualize_03.PNG
- Visualize_04.PNG
- Visualize_05.PNG
- Visualize_06.PNG
- addclassifier.PNG
- additional_properties.JPG
- additionalproperties_2.JPG
- additionalproperties_3.JPG
- additionalvideo.PNG
- addorremoveC.PNG
- advanced_annotator_6_fast.gif
- advanced_annotator_7_fast.gif
- advanced_annotator_8_fast.gif
- advanced_annotator_9.png
- agg_descriptive_stats_clf.png
- aggregate_boolean_conditional_stats.png
- aggregate_boolean_stats_table.png
- anaconda_navigator_1.webp
- anaconda_navigator_2.webp
- anaconda_navigator_3.webp
- anaconda_navigator_4.webp
- anaconda_navigator_5.webp
- anaconda_navigator_6.webp
- anaconda_navigator_7.webp
- anacondanavigator.PNG
- analyze_roi_data.png
- analyzemachineresult.PNG
- anastep1.PNG
- anastep2.PNG
- anastep3.png
- anastep4.PNG
- anchored_roi_1.png
- anchored_roi_2.png
- anchored_roi_3.png
- anchored_roi_4.png
- anchored_roi_5.png
- anchored_roi_66.png
- anchored_roi_agg_stats.png
- anchored_roi_data_ex_1.png
- anchored_roi_data_format_1.png
- anchored_roi_viz_97.png
- anchored_roi_viz_98.png
- anchored_roi_viz_99.png
- annotator_0.png
- annotator_1.gif
- annotator_1.png
- annotator_10.png
- annotator_2.gif
- annotator_3.gif
- annotator_3.png
- annotator_3_new.png
- annotator_4.gif
- annotator_4.png
- annotator_5.gif
- annotator_5.png
- annotator_6.gif
- annotator_6.png
- annotator_7.png
- annotator_adv_1.png
- annotator_adv_2.png
- annotator_shortcuts.png
- append_roi_features_032023_1.png
- autoscale.gif
- bar_new.JPG
- bar_properties.JPG
- bargraph.JPG
- batch_preprocess_1.png
- batch_preprocess_2.png
- batch_preprocess_gpu_option.png
- batch_processing_quality.png
- batch_processing_quality_quicksetting.png
- batchprocessvideo.PNG
- batchprocessvideo1.PNG
- behavior_feature.gif
- bg_removal_directory.webp
- bg_removal_single.webp
- body_part_labelling_schematic.jpg
- body_part_labelling_schematic.png
- bounding_boxes_entire_animal_termite.gif
- bounding_boxes_example.png
- bounding_boxes_example.pptx
- bounding_boxes_example_1.png
- bounding_boxes_example_2.png
- bounding_boxes_head_termite.gif
- bout_vs_frames_split.png
- cd.PNG
- changeimageformat.PNG
- changevideoformat.PNG
- checklabels.PNG
- circle_crop_1.gif
- circle_crop_2.gif
- class_weights.png
- classifier1.PNG
- classifier2.PNG
- classifiervalidation.PNG
- classifiervalidation.gif
- classifiervalidation1.PNG
- clf_per_roi_01.png
- clf_valid_2023.png
- clf_validation_0423.png
- clf_validation_12.png
- clf_validation_1223.png
- clf_viz_1.png
- clf_viz_2.png
- clf_viz_3.png
- clf_viz_4.png
- clf_viz_5.png
- clf_viz_6.png
- clf_viz_7.png
- clf_viz_8.png
- clip_multiple_videos_tools.png
- clipmulti1.png
- clipmulti2.png
- clipmulti3.png
- clustering2.PNG
- clustering_folder.PNG
- clusters_csv.PNG
- colorscale.gif
- colorscales.png
- concat_1.png
- cos_center_logo_small.original.png
- cos_center_logo_small.original.tif
- cover photo.PNG
- create_dataset.PNG
- create_dataset_folder.PNG
- create_folder.PNG
- create_path_plots_0823.png
- createdlcmodel.png
- createdlcmodel2.png
- createproject.PNG
- createproject2.PNG
- createvideo.PNG
- createvideoini.PNG
- crim_videos.gif
- crop_circles_3.png
- crop_fast.gif
- cropvideo.PNG
- cropvideo2.PNG
- cropvideo3.PNG
- cropvideo4.PNG
- cropvideoroi.gif
- csv1.PNG
- csv2.PNG
- csv3.PNG
- csv4.PNG
- csv_download.JPG
- csv_download.PNG
- csv_download.gif
- csv_export.JPG
- cue_light_1.gif
- cue_light_1.png
- cue_light_10.png
- cue_light_11.png
- cue_light_12.png
- cue_light_2.png
- cue_light_3.png
- cue_light_4.png
- cue_light_5.png
- cue_light_6.png
- cue_light_7.png
- cue_light_8.png
- cue_light_9.png
- cue_lights.png
- cue_lights_0.png
- cue_lights_89.png
- data_analysis_0523_1.png
- data_analysis_0523_2.png
- data_analysis_0523_3.png
- data_analysis_0523_4.png
- data_analysis_0523_5.png
- data_analysis_0523_6.png
- data_log.JPG
- data_tab.JPG
- data_tab.PNG
- data_table_ex1.gif
- data_table_ex2.gif
- data_table_intersection.png
- dataplot.gif
- dataset2.PNG
- dataset_folder.PNG
- dataset_folder2.PNG
- defextractf.PNG
- detailed_roi_data_0622.png
- dim_1.png
- dim_2.png
- dir_info.JPG
- directionality_tutorial_1.png
- directionality_tutorial_2.png
- directionality_tutorial_3.png
- distance_plot.gif
- distance_plot_termites.gif
- dlcworkflow.PNG
- doc_inst.png
- download_image.JPG
- downloadsettings_2.JPG
- downloadsettings_tab.JPG
- downsamplevid.PNG
- downsamplevid2.PNG
- downsamplevid3.PNG
- dpk_anno.PNG
- dtreeviz_SimBA.png
- effolder.PNG
- error_bars.gif
- evaluatenetwork.PNG
- example_cue_light.gif
- example_intersection_output.png
- example_shap_graph.png
- extractFeatures.md
- extractfeatures.PNG
- extractframeintop.PNG
- extractframesdlc.PNG
- extractfusrdef.PNG
- extractoutlier.PNG
- ez_line_plot_gif.gif
- feat_1.JPG
- feat_2.JPG
- feat_3.JPG
- feature_correlation.PNG
- feature_extraction_user_defined_2023.png
- feature_importance_log.PNG
- feature_subset_menu_1.png
- feature_subset_menu_2.png
- feature_subsets_0.png
- feature_subsets_1.png
- feature_subsets_2.png
- feature_subsets_3.png
- features2remove-2.PNG
- features2remove.PNG
- fixcropvid.PNG
- frame_id_trim_multiple_videos.png
- frame_id_trim_single_video.png
- frm_merge.png
- gantt_plot.gif
- generatetrainingsets.PNG
- get_coord.gif
- getcoord.gif
- getcoord1.PNG
- getcoord2.PNG
- getcoordtool.PNG
- getcoordtool2.PNG
- getcoordtool3.PNG
- getcoordtool4.PNG
- gnuplot_heatmap.gif
- goldenicon.PNG
- graph_titles.gif
- graphsettings_new.JPG
- graphsettings_tab.JPG
- group_colors.gif
- group_colors.png
- group_frames.gif
- group_means.JPG
- group_means.PNG
- group_means.gif
- header_radiobtn.gif
- heat_1.png
- heatmap.gif
- hover.gif
- image_download.gif
- image_export.JPG
- imageexport_2.JPG
- img_roi.png
- importcsv.PNG
- importdlc.PNG
- importh5.PNG
- importjson.PNG
- importmultivideo.PNG
- importsinglevideo.PNG
- importvids.PNG
- individual_groups.JPG
- individual_videos.PNG
- individual_videos.gif
- inferno_heatmap.gif
- intersaction_tables.png
- intersecting_examples.png
- jet_heatmap.gif
- kleinberg1.PNG
- kleinberg2.PNG
- kleinberg_2023.png
- klenberg.gif
- label_0622.png
- label_behaviornew.PNG
- label_table.png
- labelagg.PNG
- labelbe.PNG
- labelbehavior.PNG
- labelframes.PNG
- labelling_901.png
- labelling_mainscreen.PNG
- labellingtable.PNG
- labeloutliers.PNG
- landing.gif
- landing_1.gif
- launch_gui.PNG
- launch_gui.gif
- lblbehavior.PNG
- loaddlcmodel.png
- loaddlcmodel2.PNG
- loadedprojectini.PNG
- loadproject.PNG
- loadprojectini.PNG
- location_heat_maps_2023.png
- logo1.PNG
- logo1111111.png
- logo980.JPG
- machine_model_settings_2023.png
- machine_model_settings_2023_01.png
- machine_results.PNG
- machinemodelsettings.PNG
- magma_heatmap.gif
- main_gui_frm.webp
- merged_video_20230125154753.gif
- mergeframes.PNG
- mergeframes_new.PNG
- mergelabelledoutliers.PNG
- mergeplot.gif
- model_info_1.png
- model_info_2.png
- mouse_tracking.gif
- mouse_videos.gif
- movement_inside_ROI_0622.png
- movement_log.JPG
- multiVid.gif
- mutual_exclusivity_1.png
- mutual_exclusivity_2.png
- mutual_exclusivity_3.png
- mutual_exclusivity_4.png
- nastacias_fine_draw_kleinberg.png
- new_smooth.png
- new_tools_img.png
- openingvideo.gif
- original_clip0.PNG
- outliercorrection.PNG
- outliercorrection2.PNG
- overall_bar.JPG
- overallflow.PNG
- pan.gif
- pathplot.gif
- perform_DR.PNG
- perform_clustering.PNG
- perform_clustering2.PNG
- plasma_heatmap.gif
- plot_behavior.JPG
- plotgraphs.PNG
- plotsklearn.PNG
- plotvideograph.PNG
- prob_plot.gif
- probability.JPG
- probability2.JPG
- probability_features.png
- probability_means_csv.JPG
- probability_new.JPG
- probability_propertiesJPG.JPG
- probability_videos_csv.JPG
- processvideo.PNG
- processvideo2.PNG
- processvideo3.PNG
- processvideo4.PNG
- processvideo_flowdiagram.png
- pseudolabel.PNG
- quick_clip.gif
- quick_downsample.gif
- rat_videos.gif
- raw_line_plot.png
- remove_bps.png
- remove_roi_features_features_extracted.png
- remove_roi_features_targets_inserted.png
- reorg_1.png
- reset_axes.gif
- reset_settings.gif
- reversebackend.PNG
- reverseid.PNG
- reversering_1.PNG
- rfmodelsettings.PNG
- roi_definitions_tools.png
- roi_feature_viz_0123.png
- roi_feature_viz_0123_.png
- roi_main.PNG
- roi_new_1.png
- roi_new_2.png
- roi_time_9.png
- roi_viz_012023.png
- roi_viz_012023_2.png
- roi_viz_0123.png
- roidef.PNG
- roidef1.PNG
- roigif.gif
- roitable.PNG
- rotate_demo.mp4
- runrfmodel.PNG
- save_project2.PNG
- selectfolderwithvideos.PNG
- setvidparameter.PNG
- severity_analysis_pop_up.png
- severity_pop_up.png
- shap_05_1.png
- shap_05_2.png
- shap_05_3.png
- shortenvideos.PNG
- shortenvideos1.PNG
- shortenvideos2.PNG
- shortenvideos3.PNG
- simba.png
- simba_logo.jpg
- simbaworkflow.PNG
- skeleton.png
- skeleton0.PNG
- sklearn_means_csv.JPG
- sklearn_videos_csv.JPG
- spontaneous_alternation_1.png
- spontaneous_alternation_2.png
- spontaneous_alternation_3.png
- spontaneous_alternation_4.png
- spontaneous_alternation_5.png
- tabs.JPG
- termites_video_3.gif
- test_9.gif
- test_small.mp4
- third_party_2.png
- third_party_annot.png
- third_party_label_new_0.png
- third_party_label_new_1.png
- third_party_label_new_2.png
- third_party_label_new_3.png
- timebins_clf_20220921.png
- toggle_spikes.gif
- tools.png
- tools2.PNG
- tools_img_2024.png
- toolsmenu.png
- train_classifier.PNG
- train_model.PNG
- trainmachinemodel.PNG
- trainmachinemodel_settings.PNG
- trainnetwork.PNG
- tsne.PNG
- tutorial1.gif
- tutorial2.gif
- tutorial3-2.gif
- tutorial3.gif
- tutorial4.gif
- tutorial5.gif
- tutorial6.gif
- tutorial7.gif
- twitter.png
- twitter_2.png
- umap_0218.PNG
- unsupervised.png
- unsupervised_0.png
- unsupervised_1.png
- unsupervised_2.png
- unsupervised_3.png
- unsupervised_4.gif
- unsupervised_5.png
- unsupervised_6.png
- unsupervised_7.png
- unsupervised_8.png
- unsupervised_9.png
- updated_downloadsettings.JPG
- validate_single_video_1.png
- validate_single_video_2.png
- validategraph.gif
- validategraph1.PNG
- validategraph2.PNG
- validatemodel.PNG
- validatemodel_graph1.PNG
- validation_example.gif
- validation_example_2.gif
- video_info.JPG
- videoanalysis.PNG
- videofolder.PNG
- videoinfo_table.PNG
- videoinfo_table2.PNG
- videoinfo_table_20vid.PNG
- videopath.PNG
- viridis_heatmap.gif
- visualization.PNG
- visualization_11_20.PNG
- visualizations.PNG
- visualize_clusters.PNG
- visualize_clusters2.PNG
- visualize_pose_in_folder.png
- viz_pose_folder.png
- warning11.PNG
- zoom.gif
- zoom2.gif
misc
simba
tests
.gitignore
.pytest.ini
.readthedocs.yaml
App.py
CITATION.cff
CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
__init__.py
requirements.txt
requirements_arm.txt
requirements_gpu.txt
requirements_wsl.txt
setup.py