used in minnie65 production run in MICrONS Phase III

• added threshold operator

used in production for minnie65 boundary detection and semantic inference

combined boundary detection and semantic inference.

support float16 model for fast inference

• tested using the myelin-crop net

50% patch overlap using phase2 net

• script to automatically setup the info files.
• support network output patch size smaller than input patch size.

used in minnie65 phase 3 test 2 run

• add setup-env operator to setup computational environment automatically. the info files are automatically created; tasks are ingested to queue.

non-aligned inference

• support inference with non-aligned patches. A mask is used to normalize the output chunk.
• switched from unittest to pytest

used in minniex test run

• composable command line interface
• the parallel execution have to be moved to command line level. Using GNU parallel is a good option.
• add a few more operators.

used in minnie65 production run

goes well

composable command line interface

• composable command line interface
• operations were separated as individual functions.

command line interface with subcommand

to make it more flexible to use, inference is just a special operator of image chunk.