diff --git a/README.rst b/README.rst index 831ccbb58..e954445e5 100644 --- a/README.rst +++ b/README.rst @@ -41,15 +41,15 @@ Before you can search, you need to have an index. You can % bin/lambda3 mkindexp -d db.fasta -*(in case you want to create a nucleotide index, instead use ``mkindexn``)* +*(in case you want to create a nucleotide index, instead use* ``mkindexn`` *)* After that running Lambda is as simple as :: - % bin/lambda3 searchp -q query.fasta -i db.fasta.lambda + % bin/lambda3 searchp -q query.fasta -i db.fasta.lba -*(in case you want to perform a nucleotide search, instead use ``searchn``)* +*(in case you want to perform a nucleotide search, instead use* ``searchn`` *)* For a list of options, see the help pages: