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Hi,
I'm using phaser on the bams from the TCGA dataset and it crashes when the CIGAR string is *. In particular the instruction seq_len = int(number_build) at row 197 of file read_variant_map.py throws a ValueError because the string number_build is empty.
I "fixed" this in my project by returning an empty list if cigar == "*" but maybe it can be handled in a more elegant way.
Greetings,
Christian
The text was updated successfully, but these errors were encountered:
Hi,
I'm using phaser on the bams from the TCGA dataset and it crashes when the CIGAR string is
*
. In particular the instructionseq_len = int(number_build)
at row 197 of fileread_variant_map.py
throws a ValueError because the stringnumber_build
is empty.I "fixed" this in my project by returning an empty list if
cigar == "*"
but maybe it can be handled in a more elegant way.Greetings,
Christian
The text was updated successfully, but these errors were encountered: