diff --git a/docs/release-notes/1.10.3.md b/docs/release-notes/1.10.3.md new file mode 100644 index 0000000000..f2f06ca94b --- /dev/null +++ b/docs/release-notes/1.10.3.md @@ -0,0 +1,16 @@ +(v1.10.3)= +### 1.10.3 {small}`2024-09-17` + +#### Bug fixes + +- Prevent empty control gene set in {func}`~scanpy.tl.score_genes` {smaller}`M Müller` ({pr}`2875`) +- Fix `subset=True` of {func}`~scanpy.pp.highly_variable_genes` when `flavor` is `seurat` or `cell_ranger`, and `batch_key!=None` {smaller}`E Roellin` ({pr}`3042`) +- Add compatibility with {mod}`numpy` 2.0 {smaller}`P Angerer` {pr}`3065` and ({pr}`3115`) +- Fix `legend_loc` argument in {func}`scanpy.pl.embedding` not accepting matplotlib parameters {smaller}`P Angerer` ({pr}`3163`) +- Fix dispersion cutoff in {func}`~scanpy.pp.highly_variable_genes` in presence of `NaN`s {smaller}`P Angerer` ({pr}`3176`) +- Fix axis labeling for swapped axes in {func}`~scanpy.pl.rank_genes_groups_stacked_violin` {smaller}`Ilan Gold` ({pr}`3196`) +- Upper bound dask on account of {issue}`scverse/anndata#1579` {smaller}`Ilan Gold` ({pr}`3217`) +- The [fa2-modified][] package replaces [forceatlas2][] for the latter’s lack of maintenance {smaller}`A Alam` ({pr}`3220`) + + [fa2-modified]: https://github.com/AminAlam/fa2_modified + [forceatlas2]: https://github.com/bhargavchippada/forceatlas2 diff --git a/docs/release-notes/2875.bugfix.md b/docs/release-notes/2875.bugfix.md deleted file mode 100644 index 0a4866f175..0000000000 --- a/docs/release-notes/2875.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Prevent empty control gene set in {func}`~scanpy.tl.score_genes` {smaller}`M Müller` diff --git a/docs/release-notes/3042.bugfix.md b/docs/release-notes/3042.bugfix.md deleted file mode 100644 index 8317856177..0000000000 --- a/docs/release-notes/3042.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Fix `subset=True` of {func}`~scanpy.pp.highly_variable_genes` when `flavor` is `seurat` or `cell_ranger`, and `batch_key!=None` {smaller}`E Roellin` diff --git a/docs/release-notes/3115.bugfix.md b/docs/release-notes/3115.bugfix.md deleted file mode 100644 index 2e31f4f691..0000000000 --- a/docs/release-notes/3115.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Add compatibility with {mod}`numpy` 2.0 {smaller}`P Angerer` {pr}`3065` and diff --git a/docs/release-notes/3163.bugfix.md b/docs/release-notes/3163.bugfix.md deleted file mode 100644 index 7e82799ee8..0000000000 --- a/docs/release-notes/3163.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Fix `legend_loc` argument in {func}`scanpy.pl.embedding` not accepting matplotlib parameters {smaller}`P Angerer` diff --git a/docs/release-notes/3176.bugfix.md b/docs/release-notes/3176.bugfix.md deleted file mode 100644 index bd22b88f8e..0000000000 --- a/docs/release-notes/3176.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Fix dispersion cutoff in {func}`~scanpy.pp.highly_variable_genes` in presence of `NaN`s {smaller}`P Angerer` diff --git a/docs/release-notes/3196.bugfix.md b/docs/release-notes/3196.bugfix.md deleted file mode 100644 index 8b701aa42f..0000000000 --- a/docs/release-notes/3196.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Fix axis labeling for swapped axes in {func}`~scanpy.pl.rank_genes_groups_stacked_violin` {smaller}`Ilan Gold` diff --git a/docs/release-notes/3217.bugfix.md b/docs/release-notes/3217.bugfix.md deleted file mode 100644 index 9054c4c8f6..0000000000 --- a/docs/release-notes/3217.bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Upper bound dask on account of {issue}`scverse/anndata#1579` {smaller}`Ilan Gold` diff --git a/docs/release-notes/3220.bugfix.md b/docs/release-notes/3220.bugfix.md deleted file mode 100644 index 81437fc4cf..0000000000 --- a/docs/release-notes/3220.bugfix.md +++ /dev/null @@ -1,4 +0,0 @@ -The [fa2-modified][] package replaces [forceatlas2][] for the latter’s lack of maintenance {smaller}`A Alam` - -[fa2-modified]: https://github.com/AminAlam/fa2_modified -[forceatlas2]: https://github.com/bhargavchippada/forceatlas2