From aefc914d31169285b8c50e1a29a98bb098647633 Mon Sep 17 00:00:00 2001
From: "Lumberbot (aka Jack)"
 <39504233+meeseeksmachine@users.noreply.github.com>
Date: Tue, 12 Mar 2024 22:34:02 +0100
Subject: [PATCH] Backport PR #1419: [pre-commit.ci] pre-commit autoupdate
 (#1420)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
---
 .pre-commit-config.yaml              | 2 +-
 anndata/_core/merge.py               | 1 +
 anndata/_types.py                    | 1 +
 anndata/tests/test_annot.py          | 1 +
 anndata/tests/test_awkward.py        | 1 +
 anndata/tests/test_concatenate.py    | 6 +++---
 anndata/tests/test_dask.py           | 8 +++++---
 anndata/tests/test_deprecations.py   | 1 +
 anndata/tests/test_io_conversion.py  | 1 +
 anndata/tests/test_io_elementwise.py | 1 +
 anndata/tests/test_x.py              | 1 +
 benchmarks/benchmarks/readwrite.py   | 1 +
 12 files changed, 18 insertions(+), 7 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 064bdc00f..86751df5a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.2.2
+    rev: v0.3.2
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]
diff --git a/anndata/_core/merge.py b/anndata/_core/merge.py
index 48f36be9d..d326d0ac2 100644
--- a/anndata/_core/merge.py
+++ b/anndata/_core/merge.py
@@ -1,6 +1,7 @@
 """
 Code for merging/ concatenating AnnData objects.
 """
+
 from __future__ import annotations
 
 import typing
diff --git a/anndata/_types.py b/anndata/_types.py
index 7f57e380f..17dd014d5 100644
--- a/anndata/_types.py
+++ b/anndata/_types.py
@@ -1,6 +1,7 @@
 """
 Defines some useful types for this library. Should probably be cleaned up before thinking about exporting.
 """
+
 from __future__ import annotations
 
 from typing import Union
diff --git a/anndata/tests/test_annot.py b/anndata/tests/test_annot.py
index 0ea609906..7f4c2697e 100644
--- a/anndata/tests/test_annot.py
+++ b/anndata/tests/test_annot.py
@@ -1,4 +1,5 @@
 """Test handling of values in `obs`/ `var`"""
+
 from __future__ import annotations
 
 import numpy as np
diff --git a/anndata/tests/test_awkward.py b/anndata/tests/test_awkward.py
index 2e996bfc6..ac525ce95 100644
--- a/anndata/tests/test_awkward.py
+++ b/anndata/tests/test_awkward.py
@@ -1,4 +1,5 @@
 """Tests related to awkward arrays"""
+
 from __future__ import annotations
 
 import warnings
diff --git a/anndata/tests/test_concatenate.py b/anndata/tests/test_concatenate.py
index e24431436..80714d44a 100644
--- a/anndata/tests/test_concatenate.py
+++ b/anndata/tests/test_concatenate.py
@@ -873,9 +873,9 @@ def test_nan_merge(axis, join_type, array_type):
     with warnings.catch_warnings():
         warnings.simplefilter("ignore", category=sparse.SparseEfficiencyWarning)
         for _ in range(10):
-            arr_nan[
-                np.random.choice(arr.shape[0]), np.random.choice(arr.shape[1])
-            ] = np.nan
+            arr_nan[np.random.choice(arr.shape[0]), np.random.choice(arr.shape[1])] = (
+                np.nan
+            )
 
     _data = {"X": sparse.csr_matrix(adata_shape), mapping_attr: {"arr": arr_nan}}
     orig1 = AnnData(**_data)
diff --git a/anndata/tests/test_dask.py b/anndata/tests/test_dask.py
index 56cb0f8c8..a4f92d162 100644
--- a/anndata/tests/test_dask.py
+++ b/anndata/tests/test_dask.py
@@ -1,6 +1,7 @@
 """
 For tests using dask
 """
+
 from __future__ import annotations
 
 import pandas as pd
@@ -107,9 +108,10 @@ def test_dask_distributed_write(adata, tmp_path, diskfmt):
     pth = tmp_path / f"test_write.{diskfmt}"
     g = as_group(pth, mode="w")
 
-    with dd.LocalCluster(
-        n_workers=1, threads_per_worker=1, processes=False
-    ) as cluster, dd.Client(cluster):
+    with (
+        dd.LocalCluster(n_workers=1, threads_per_worker=1, processes=False) as cluster,
+        dd.Client(cluster),
+    ):
         M, N = adata.X.shape
         adata.obsm["a"] = da.random.random((M, 10))
         adata.obsm["b"] = da.random.random((M, 10))
diff --git a/anndata/tests/test_deprecations.py b/anndata/tests/test_deprecations.py
index 39176e315..932d9e01d 100644
--- a/anndata/tests/test_deprecations.py
+++ b/anndata/tests/test_deprecations.py
@@ -3,6 +3,7 @@
 
 This includes correct behaviour as well as throwing warnings.
 """
+
 from __future__ import annotations
 
 import warnings
diff --git a/anndata/tests/test_io_conversion.py b/anndata/tests/test_io_conversion.py
index 29a5d27e9..b5a8b639a 100644
--- a/anndata/tests/test_io_conversion.py
+++ b/anndata/tests/test_io_conversion.py
@@ -1,6 +1,7 @@
 """\
 This file contains tests for conversion made during io.
 """
+
 from __future__ import annotations
 
 import h5py
diff --git a/anndata/tests/test_io_elementwise.py b/anndata/tests/test_io_elementwise.py
index 4ed4dddab..51ca106d5 100644
--- a/anndata/tests/test_io_elementwise.py
+++ b/anndata/tests/test_io_elementwise.py
@@ -1,6 +1,7 @@
 """
 Tests that each element in an anndata is written correctly
 """
+
 from __future__ import annotations
 
 import re
diff --git a/anndata/tests/test_x.py b/anndata/tests/test_x.py
index 5f381c8c1..fd8e2f613 100644
--- a/anndata/tests/test_x.py
+++ b/anndata/tests/test_x.py
@@ -1,4 +1,5 @@
 """Tests for the attribute .X"""
+
 from __future__ import annotations
 
 import numpy as np
diff --git a/benchmarks/benchmarks/readwrite.py b/benchmarks/benchmarks/readwrite.py
index c273a436b..504f7fb5c 100644
--- a/benchmarks/benchmarks/readwrite.py
+++ b/benchmarks/benchmarks/readwrite.py
@@ -19,6 +19,7 @@
 * io for backed objects
 * Reading dense as sparse, writing sparse as dense
 """
+
 from __future__ import annotations
 
 import sys