Workflow for manual correction

[jcohenadad]

Context

Having multiple people helping with correcting the segmentations, we need a proper workflow to distribute the QC/processed data, retrieve them, etc.

Suggestion

• Select participants Test procedure for candidates helping with manual correction of segmentations #36
• Send QC to participants
• Ask participants to sort per Subject (click on the top row and "sort per subject")
• Define the subject range that each participant will help with (e.g. chunk of 100 subjects)
• Each participant will create:
  • a YML file that lists the subjects to correct: correct_firstname_familyname.yml
  • a YML file that lists the subject to exclude from the analysis (very bad quality, see e.g. pavia-03 and T2w bad quality): exclude_firstname_familyname.yml
• Lead team will package the data (automatic seg + associated data) and send to the respective participant
  • Could re-use this packaging script
• Participant will correct the data, package the derivatives folder as a ZIP package and send it to the lead team
• Lead team will quickly review and add to the git-annex centralized repository and add the YML list of subjects to exclude to exclude.yml