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Suggestions for improving registration #2

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jcohenadad opened this issue Apr 16, 2020 · 0 comments
Open

Suggestions for improving registration #2

jcohenadad opened this issue Apr 16, 2020 · 0 comments

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@jcohenadad
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sct_resample -i sub167_T1w.nii.gz -mm 1x1x1 -o sub167_T1w_1mm.nii.gz 
sct_resample -i sub167_T2w.nii.gz -mm 1x1x1 -o sub167_T2w_1mm.nii.gz 
# step below to improve with dedicated optic model
sct_get_centerline -i sub167_T2w_1mm.nii.gz -c t2 -method optic 
sct_create_mask -i sub167_T2w_1mm.nii.gz -size 50mm -f cylinder -p centerline,sub167_T2w_1mm_centerline.nii.gz -o mask.nii.gz
sct_register_multimodal -i sub167_T1w_1mm.nii.gz -d sub167_T2w_1mm.nii.gz -m mask.nii.gz -param step=1,type=im,algo=slicereg,metric=CC
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