From db8305e7e0f7f2a13fc41be245959e13d39a82ed Mon Sep 17 00:00:00 2001 From: Sanjay C Nagi Date: Mon, 6 Jan 2025 18:57:25 +0530 Subject: [PATCH] update gcs buckets --- AnoPrimer/utils.py | 12 +++++++++--- pyproject.toml | 2 +- 2 files changed, 10 insertions(+), 4 deletions(-) diff --git a/AnoPrimer/utils.py b/AnoPrimer/utils.py index 6a160fa..8af3fb5 100644 --- a/AnoPrimer/utils.py +++ b/AnoPrimer/utils.py @@ -13,9 +13,13 @@ def retrieve_data_resource(species): "funestus", ], f"species {species} not recognised, please use 'gambiae_sl' or 'funestus'" if species == "gambiae_sl": - data_resource = malariagen_data.Ag3(url="gs://vo_agam_release/", pre=True) + data_resource = malariagen_data.Ag3( + url="gs://vo_agam_release_master_us_central1", pre=True + ) elif species == "funestus": - data_resource = malariagen_data.Af1(url="gs://vo_afun_release/", pre=True) + data_resource = malariagen_data.Af1( + url="gs://vo_afun_release_master_us_central1", pre=True + ) return data_resource @@ -39,7 +43,9 @@ def check_my_oligo( print("plotting frequencies in ag3 data") fig = plot_sequence_frequencies( - data_resource=malariagen_data.Ag3(url="gs://vo_agam_release/", pre=True), + data_resource=malariagen_data.Ag3( + url="gs://vo_agam_release_master_us_central1", pre=True + ), region=region_span, sample_sets=sample_sets, sample_query=sample_query, diff --git a/pyproject.toml b/pyproject.toml index f83f46a..d8c9600 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "AnoPrimer" -version = "2.0.6" +version = "2.0.7" description = "A package to design primers in Anopheles gambiae whilst considering genetic variation with malariagen_data" readme = "README.md" documentation = "https://sanjaynagi.github.io/anoprimer/latest/"