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example_output.txt
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presolving:
(round 1, fast) 1974 del vars, 1231 del conss, 0 add conss, 834 chg bounds, 0 chg sides, 0 chg coeffs, 0 upgd conss, 0 impls, 51 clqs
(round 2, fast) 2119 del vars, 2029 del conss, 0 add conss, 834 chg bounds, 0 chg sides, 0 chg coeffs, 0 upgd conss, 0 impls, 8 clqs
(round 3, fast) 2150 del vars, 2038 del conss, 0 add conss, 834 chg bounds, 0 chg sides, 0 chg coeffs, 0 upgd conss, 0 impls, 0 clqs
presolving (4 rounds: 4 fast, 1 medium, 1 exhaustive):
2152 deleted vars, 2038 deleted constraints, 0 added constraints, 834 tightened bounds, 0 added holes, 0 changed sides, 0 changed coefficients
0 implications, 0 cliques
presolved problem has 0 variables (0 bin, 0 int, 0 impl, 0 cont) and 0 constraints
transformed objective value is always integral (scale: 1)
Presolving Time: 0.01
time | node | left |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr| dualbound | primalbound | gap
t 0.0s| 1 | 0 | 0 | - |9789k| 0 | - | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.500000e+01 | 2.500000e+01 | 0.00%
SCIP Status : problem is solved [optimal solution found]
Solving Time (sec) : 0.01
Solving Nodes : 1
Primal Bound : +2.50000000000000e+01 (1 solutions)
Dual Bound : +2.50000000000000e+01
Gap : 0.00 %
local Patient1_cancer_cells_thresh1_38genes.txt: Obj = 6.0
[EPHA2 FGFR3 EGFR GPC3 FGFR1 APP]
Tumor cell(hittable/total): 61/62
Non Tumor cell: 6
local Patient2_cancer_cells_thresh1_38genes.txt: Obj = 9.0
[IL6R VIPR1 EGFR MET GPC3 CD44 FOLH1 FGFR2 CDH1]
Tumor cell(hittable/total): 101/106
Non Tumor cell: 30
local Patient3_cancer_cells_thresh1_38genes.txt: Obj = 8.0
[EPHA2 MUC1 KDR EGFR MET NRP1 CDH1 ERBB2]
Tumor cell(hittable/total): 341/465
Non Tumor cell: 171
local Patient4_cancer_cells_thresh1_38genes.txt: Obj = 14.0
[EPHA2 CR2 FGFR4 EPHB4 MET CD274 CD44 PTPRJ IL10RA ANPEP CDH1 ERBB2 CDH2 APP]
Tumor cell(hittable/total): 117/743
Non Tumor cell: 48
local Patient5_cancer_cells_thresh1_38genes.txt: Obj = 9.0
[EPHA2 IL6R MUC1 FGFR3 EGFR MET CD44 CDH1 ERBB2]
Tumor cell(hittable/total): 767/1019
Non Tumor cell: 257
=====Solution #0=====
The optimal global hitting set is 25.0
The selected genes are: [EPHA2 IL6R MUC1 CR2 VIPR1 FGFR3 KDR FGFR4 EGFR EPHB4 MET GPC3 FGFR1 CD274 CD44 PTPRJ FOLH1 IL10RA NRP1 FGFR2 ANPEP CDH1 ERBB2 CDH2 APP]
The selected genes for data/E-MTAB-6149/Patient1_cancer_cells_thresh1_38genes.txt: [EPHA2 FGFR3 EGFR GPC3 FGFR1 APP]
The selected genes for data/E-MTAB-6149/Patient2_cancer_cells_thresh1_38genes.txt: [IL6R VIPR1 EGFR MET GPC3 CD44 FOLH1 FGFR2 CDH1]
The selected genes for data/E-MTAB-6149/Patient3_cancer_cells_thresh1_38genes.txt: [EPHA2 MUC1 KDR EGFR MET NRP1 CDH1 ERBB2]
The selected genes for data/E-MTAB-6149/Patient4_cancer_cells_thresh1_38genes.txt: [EPHA2 CR2 FGFR4 EPHB4 MET CD274 CD44 PTPRJ IL10RA ANPEP CDH1 ERBB2 CDH2 APP]
The selected genes for data/E-MTAB-6149/Patient5_cancer_cells_thresh1_38genes.txt: [EPHA2 IL6R MUC1 FGFR3 EGFR MET CD44 CDH1 ERBB2]
Size of global hitting set is: 25
The percentage of non-cancer cells killed/targeted by the optimal solution for data/E-MTAB-6149/Patient1_cancer_cells_thresh1_38genes.txt: 0.0
The percentage of non-cancer cells killed/targeted by the optimal solution for data/E-MTAB-6149/Patient2_cancer_cells_thresh1_38genes.txt: 0.16666666666666666
The percentage of non-cancer cells killed/targeted by the optimal solution for data/E-MTAB-6149/Patient3_cancer_cells_thresh1_38genes.txt: 0.14619883040935672
The percentage of non-cancer cells killed/targeted by the optimal solution for data/E-MTAB-6149/Patient4_cancer_cells_thresh1_38genes.txt: 0.2916666666666667
The percentage of non-cancer cells killed/targeted by the optimal solution for data/E-MTAB-6149/Patient5_cancer_cells_thresh1_38genes.txt: 0.2723735408560311
The average percentage of non-cancer cells killed/targeted by the optimal solution across all the patients 0.17538114091974424
Size of the hitting set for data/E-MTAB-6149/Patient1_cancer_cells_thresh1_38genes.txt: 6
Size of the hitting set for data/E-MTAB-6149/Patient2_cancer_cells_thresh1_38genes.txt: 9
Size of the hitting set for data/E-MTAB-6149/Patient3_cancer_cells_thresh1_38genes.txt: 8
Size of the hitting set for data/E-MTAB-6149/Patient4_cancer_cells_thresh1_38genes.txt: 14
Size of the hitting set for data/E-MTAB-6149/Patient5_cancer_cells_thresh1_38genes.txt: 9
The average hitting set across all the patients 9.2
The number of uncovered cancer cells plus size of the hitting set for data/E-MTAB-6149/Patient1_cancer_cells_thresh1_38genes.txt: 7
The number of uncovered cancer cells plus size of the hitting set for data/E-MTAB-6149/Patient2_cancer_cells_thresh1_38genes.txt: 14
The number of uncovered cancer cells plus size of the hitting set for data/E-MTAB-6149/Patient3_cancer_cells_thresh1_38genes.txt: 132
The number of uncovered cancer cells plus size of the hitting set for data/E-MTAB-6149/Patient4_cancer_cells_thresh1_38genes.txt: 640
The number of uncovered cancer cells plus size of the hitting set for data/E-MTAB-6149/Patient5_cancer_cells_thresh1_38genes.txt: 261
The average of the number of uncovered cancer cells plus size of the hitting set across all the patients 210.8