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update some modules to handle multiple k values #2

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rsuchecki opened this issue Feb 23, 2020 · 0 comments
Open

update some modules to handle multiple k values #2

rsuchecki opened this issue Feb 23, 2020 · 0 comments

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@rsuchecki
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rsuchecki commented Feb 23, 2020 •
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Some of the modules, such as kmatch should be easily extensible to handle multiple k values.

This should apply to any module based on querying a set/map of k-mers where the length of k-mer is not otherwise fixed.

Input format recognition may need updating to prevent

[INFO]     Input format guessed: UNSUPPORTED_OR_UNRECOGNIZED
[FATAL]    Unrecognized or unsupported input, terminating...

when different length k-mers present among the first n lines used for format recognition
rsuchecki added a commit that referenced this issue Feb 24, 2020
@rsuchecki
changes partially facilitating multi k #2
df5ac96 
also relevant to kmerloc
rsuchecki added a commit that referenced this issue May 11, 2021
@rsuchecki
changes partially facilitating multi k #2
f6ca5f7 
also relevant to kmerloc
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@rsuchecki