DESCRIPTION

Type: Package
Date: 2021-01-27
Package: kibior
Version: 0.1.1
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.1
URL: https://github.com/regisoc/kibior
BugReports: https://github.com/regisoc/kibior/issues
Title: A Simple Data Management and Sharing Tool
biocViews: DataImport, DataRepresentation, ThirdPartyClient
Authors@R: c(
    person(given = "Régis",
           family = "Ongaro-Carcy",
           role = c("aut", "cre", "ctb"),
           email = "regis.ongaro-carcy2@crchudequebec.ulaval.ca",
           comment = c(ORCID = "0000-0002-0091-8810")),
    person(given = "Arnaud",
           family = "Droit",
           role = c("fnd"),
           email = "arnaud.droit@crchudequebec.ulaval.ca"))
Description: An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.
Depends:
    R (>= 4.0)
Imports:
    R6 (>= 2.5.0),
    data.table (>= 1.13.2),
    stringr (>= 1.4.0),
    purrr (>= 0.3.4),
    jsonlite (>= 1.7.1),
    rio (>= 0.5.16),
    tibble (>= 3.0.4),
    dplyr (>= 1.0.2),
    magrittr (>= 1.5),
    tidyr (>= 1.1.2),
    elastic (>= 1.1.0),
    Biostrings,
    Rsamtools,
    rtracklayer
Suggests:
    ggplot2 (>= 3.3.2),
    readr (>= 1.4.0), 
    xml2 (>= 1.3.2),
    yaml (>= 2.2.1),
    testthat (>= 3.0.0),
    rmarkdown (>= 2.5),
    knitr (>= 1.30)
License: GPL-2
LazyData: true