copy number file -c flag

[complexgenome]

Hello classifier team,
I'm interested to use copy number utility from RDP classifier. I've following as my query:
1- The documentation mentions to provide copy number files with flag -c. However, in -help, -c is for the confidence used for the classification.
Am I misunderstanding something from help on IO screen and your documentation?
Kindly guide.

[rdpstaffmsu]

Hi, Sanjeev,

'-c' option takes copy number file when Classifier is in 'train' mode, e.g.
'java -jar classifier.jar train', while it means confidence in 'classify'
mode. Let me know you have questions.

Benli

On Fri, Aug 14, 2015 at 10:20 AM, Sanjeev [email protected] wrote:

Hello classifier team,
I'm interested to use copy number utility from RDP classifier. I've
following as my query:
1- The documentation mentions to provide copy number files with flag -c.
However, in -help, -c is for the confidence used for the classification.
Am I misunderstanding something from help on IO screen and your
documentation?
Kindly guide.

—
Reply to this email directly or view it on GitHub
#11.

RDP Staff
Ribosomal Database Project
Center for Microbial Ecology
Michigan State University
567 Wilson Rd. Room 2225 A
East Lansing, MI 48824
(517) 353-3842

[complexgenome]

Hi Benli,

• Thanks for your prompt response.
• Can I use -c (copy number flag) with default RDP classification? Or is it to be used with trained data set, only?
• Is there a mailing list for queries to RDP? Or would you suggest me to go ahead and ask at github?

Thanks.
--Sariya

[rdpstaffmsu]

This option is used only when you re-train the Classifier. You can also
contact us through [email protected] email.

Benli

On Fri, Aug 14, 2015 at 12:22 PM, Sanjeev [email protected] wrote:

Hi Benli,

• Thanks for your prompt response.
• Can I use -c (copy number flag) with default RDP classification? Or
  is it to be used with trained data set, only?
• Is there a mailing list for queries to RDP? Or would you suggest me
  to go ahead and ask at github?

Thanks.
--Sariya

—
Reply to this email directly or view it on GitHub
#11 (comment).

RDP Staff
Ribosomal Database Project
Center for Microbial Ecology
Michigan State University
567 Wilson Rd. Room 2225 A
East Lansing, MI 48824
(517) 353-3842

[complexgenome]

Hi Benli,
Thanks for sharing mail id. I've contacted the mentioned mail for further doubts. Reply much awaited. :-)
Regards,
Sanjeev