Need to download the database

[prakruthikr]

I am fetching below information from RDP
Goto Hierarchy Browser>Search species> copy Strain type and Locus ID
Example:
S000413927 Bradyrhizobium oligotrophicum (T); JCM 1494; D78366
S000438365 Bradyrhizobium japonicum (T); USDA 6, 3I1b6, ATCC10324, SEMIA 5052, RCR 3425, ACCC 15032; original isolate received by USDA from Dr. K. Aso; U69638

Is there a way to fetch this information from the database directly by downloading the updated fasta/entire data base dump?
Please guide me steps if any way available as I will be requiring this sort of data to download monthly basis?
I downloaded bacteria aligned fasta file, but that does not serve the purpose

[rdpstaffmsu]

Dear User,

The direct data query is not current open to the public. You can download
the entire dataset (aligned or unaligned) in batch using the links provided
on RDP Resource page (http://rdp.cme.msu.edu/misc/resources.jsp). Let me
know if it works for you.

Sincerely,

Benli Chai
RDP Staff

On Tue, Jun 14, 2016 at 7:17 AM, prakruthikr [email protected]
wrote:

I am fetching below information from RDP
Goto Hierarchy Browser>Search species> copy Strain type and Locus ID
Example:
S000413927 Bradyrhizobium oligotrophicum (T); JCM 1494; D78366

S000438365 Bradyrhizobium japonicum (T); USDA 6, 3I1b6, ATCC10324, SEMIA
5052, RCR 3425, ACCC 15032; original isolate received by USDA from Dr. K.
Aso; U69638

Is there a way to fetch this information from the database directly by
downloading the updated fasta/entire data base dump?
Please guide me steps if any way available as I will be requiring this
sort of data to download monthly basis?
I downloaded bacteria aligned fasta file, but that does not serve the
purpose

—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
#12, or mute the thread
https://github.com/notifications/unsubscribe/AKlEVjMNcQ6gR-rV6wCloEQvvJOPytHiks5qLo3mgaJpZM4I1NoO
.

RDP Staff
Ribosomal Database Project
Center for Microbial Ecology
Michigan State University
567 Wilson Rd. Room 2225 A
East Lansing, MI 48824
(517) 353-3842

[koopkaup]

Downloading unaligned bacterial and archaeal sequences (fasta format) is extremely slow and takes very long time. What could be the reason?