diff --git a/python/cuvs_bench/cuvs_bench/run/run.py b/python/cuvs_bench/cuvs_bench/run/run.py
index 0159d2c19..d7827a096 100644
--- a/python/cuvs_bench/cuvs_bench/run/run.py
+++ b/python/cuvs_bench/cuvs_bench/run/run.py
@@ -158,6 +158,7 @@ def gather_algorithm_configs(
 def load_algorithms_conf(
     algos_conf_fs: list,
     allowed_algos: Optional[list],
+    allowed_groups: Optional[list],
     allowed_algo_groups: Optional[tuple],
 ) -> dict:
     """
@@ -187,8 +188,11 @@ def load_algorithms_conf(
             continue
         if allowed_algos and algo["name"] not in allowed_algos:
             continue
+        groups = algo.get("groups", {})
+        if allowed_groups:
+            groups = {k: v for k, v in groups.items() if k in allowed_groups}
         algos_conf[algo["name"]] = {
-            "groups": algo.get("groups", {}),
+            "groups": groups,
             "constraints": algo.get("constraints", {}),
         }
         if allowed_algo_groups and algo["name"] in allowed_algo_groups[0]:
@@ -643,6 +647,7 @@ def run_benchmark(
     algos_conf_fs = gather_algorithm_configs(scripts_path, configuration)
 
     allowed_algos = algorithms.split(",") if algorithms else None
+    allowed_groups = groups.split(",") if groups else None
     allowed_algo_groups = (
         [algo_group.split(".") for algo_group in algo_groups.split(",")]
         if algo_groups
@@ -651,7 +656,8 @@ def run_benchmark(
     algos_conf = load_algorithms_conf(
         algos_conf_fs,
         allowed_algos,
-        list(zip(*allowed_algo_groups)) if allowed_algo_groups else None,
+        allowed_groups,
+        tuple(zip(*allowed_algo_groups)) if allowed_algo_groups else None,
     )
 
     executables_to_run = prepare_executables(