v23.10.00

🐛 Bug Fixes

• Use conda mambabuild not mamba mambabuild (#607) @bdice

📖 Documentation

• minor updates to release 23.08 changelog (#605) @grlee77

🛠️ Improvements

• Update image names (#609) @AyodeAwe
• Use copy-pr-bot (#606) @ajschmidt8

v23.08.00

🚨 Breaking Changes

• Sync cuCIM API with scikit-image 0.21 (#573) @grlee77

🐛 Bug Fixes

• Remove libwebp-base upper bound. (#599) @bdice
• Fix ignore_run_exports_from. (#596) @bdice
• Add ignore_run_exports for CUDA 11 (#593) @raydouglass
• Use linalg & inline _get_manders_overlap_coeff (#578) @jakirkham
• Fix canny and butterworth (recent CuPy and NumPy compatibility) (#574) @grlee77

🛠️ Improvements

• Postponed the assessment of GPU memory for testing (#601) @gigony
• Do not use x86_64 GDS binaries for aarch64 (#590) @gigony
• remove checks for versions of scikit-image that are no longer supported (#587) @grlee77
• Allow scikit-image 0.21.0 (#580) @jakirkham
• Drop unneeded selector on libwebp-base (#579) @jakirkham
• switch from bundled lazy loading code to the public lazy_loader package (#575) @grlee77
• Sync cuCIM API with scikit-image 0.21 (#573) @grlee77
• cuCIM: Build CUDA 12 packages (#572) @jakirkham
• use rapids-upload-docs script (#570) @AyodeAwe
• Remove documentation build scripts for Jenkins (#567) @ajschmidt8

v23.06.00

🚨 Breaking Changes

• Support Python 3.9 build/tests (#547) @shwina

🐛 Bug Fixes

• Fix SHA256 check failure in test suite (#564) @grlee77
• Handle space character in ./run download_testdata (#556) @gigony
• Fix return_error='always' behavior in phase_cross_correlation (#549) @grlee77
• Only load versioned libcufile (#548) @jakirkham
• add a 20 minute timeout for pytest runs on CI (#545) @grlee77
• protect against possible out of bounds memory access in 2D distance transform (#540) @grlee77

📖 Documentation

• Fix doc building via run build_package (#553) @grlee77
• update changelog for release 23.04.00 and 23.04.01 (#552) @grlee77

🛠️ Improvements

• Allow numpy 1.24. (#563) @bdice
• run docs nightly too (#560) @AyodeAwe
• Update cupy dependency (#558) @vyasr
• Remove libjpeg dependency (#557) @gigony
• Enable sccache hits from local builds (#551) @AyodeAwe
• Revert shared workflows branch (#550) @ajschmidt8
• Support Python 3.9 build/tests (#547) @shwina
• Remove usage of rapids-get-rapids-version-from-git (#546) @jjacobelli
• Use ARC V2 self-hosted runners for GPU jobs (#538) @jjacobelli
• Remove underscore in build string. (#528) @bdice

v23.04.01

🚨 Breaking Changes

• Fix inefficiency in handling clipping of image range in resize and other transforms (#516) @grlee77

🐛 Bug Fixes

• Fix bug in median filter with non-uniform footprint (#521) @grlee77
• use cp.around instead of cp.round for CuPy 10.x compatiblity (#508) @grlee77
• Fix error in LZ4-compressed Zarr writing demo (#506) @grlee77
• Normalize whitespace. (#474) @bdice

🛠️ Improvements

• Pin libwebp-base (#541) @ajschmidt8
• allow scikit-image 0.20 as well (#536) @grlee77
• Pass AWS_SESSION_TOKEN and SCCACHE_S3_USE_SSL vars to conda build (#525) @ajschmidt8
• Update aarch64 to GCC 11 (#524) @bdice
• Update to GCC 11 (#522) @bdice
• Upgrade dockcross and pybind11 (#519) @gigony
• Binary morphology: omit weights array when possible (#517) @grlee77
• Fix inefficiency in handling clipping of image range in resize and other transforms (#516) @grlee77
• Fix GHA build workflow (#515) @AjayThorve
• Reduce error handling verbosity in CI tests scripts (#511) @AjayThorve
• Update shared workflow branches (#510) @ajschmidt8
• Remove gpuCI scripts. (#505) @bdice
• Move date to build string in conda recipe (#497) @ajschmidt8

v23.04.00

🚨 Breaking Changes

• Fix inefficiency in handling clipping of image range in resize and other transforms (#516) @grlee77

🐛 Bug Fixes

• Fix bug in median filter with non-uniform footprint (#521) @grlee77
• use cp.around instead of cp.round for CuPy 10.x compatiblity (#508) @grlee77
• Fix error in LZ4-compressed Zarr writing demo (#506) @grlee77
• Normalize whitespace. (#474) @bdice

🛠️ Improvements

• allow scikit-image 0.20 as well (#536) @grlee77
• Pass AWS_SESSION_TOKEN and SCCACHE_S3_USE_SSL vars to conda build (#525) @ajschmidt8
• Update aarch64 to GCC 11 (#524) @bdice
• Update to GCC 11 (#522) @bdice
• Upgrade dockcross and pybind11 (#519) @gigony
• Binary morphology: omit weights array when possible (#517) @grlee77
• Fix inefficiency in handling clipping of image range in resize and other transforms (#516) @grlee77
• Fix GHA build workflow (#515) @AjayThorve
• Reduce error handling verbosity in CI tests scripts (#511) @AjayThorve
• Update shared workflow branches (#510) @ajschmidt8
• Remove gpuCI scripts. (#505) @bdice
• Move date to build string in conda recipe (#497) @ajschmidt8

v23.02.00

🚨 Breaking Changes

• Add disambiguation option to phase_cross_correlation (skimage 0.20 feature) (#486) @grlee77

🐛 Bug Fixes

• apply bug fix to vendored ndimage code (#494) @grlee77
• Closes #490 -- fixes bug in hue jitter (#491) @benlansdell
• Fix random seed used in test_3d_similarity_estimation (#472) @grlee77

📖 Documentation

• Fix documentation author (#475) @bdice

🚀 New Features

• Add colocalization measures (#488) @grlee77
• Add disambiguation option to phase_cross_correlation (skimage 0.20 feature) (#486) @grlee77

🛠️ Improvements

• Update shared workflow branches (#501) @ajschmidt8
• Update isort version to 5.12.0 (#492) @ajschmidt8
• Improve rank filtering performance by removing use of footprint kernel when possible (#485) @grlee77
• use vendored version of cupy.pad with added performance optimizations (#482) @grlee77
• add docs builds to Github Actions (#481) @AjayThorve
• Update numpy version specifier (#480) @ajschmidt8
• Build CUDA 11.8 and Python 3.10 Packages (#476) @ajschmidt8
• Add GitHub Actions Workflows. (#471) @bdice
• Fix conflicts in "Forward-merge branch-22.12 to branch-23.02" (#468) @jakirkham
• Enable copy_prs. (#465) @bdice

v22.12.00

🚨 Breaking Changes

• Implement additional deprecations carried out for scikit-image 0.20 (#451) @grlee77
• improved implementation of ridge filters (bug fixes and reduced memory footprint) (#423) @grlee77

🐛 Bug Fixes

• pin to cmake !3.25.0 on CI to avoid bug with CUDA+conda during build (#444) @grlee77
• update incorrect argument and deprecated function for tifffile.TiffWriter (#433) @JoohyungLee0106
• Fix rotate behavior for ndim > 2 (#432) @grlee77

📖 Documentation

• add whole-slide tiled read/write demos for measuring GPUDirect Storage (GDS) I/O performance (#452) @grlee77
• Add demo for distance_transform_edt (#394) @grlee77

🚀 New Features

• Support no-compression method in converter (#443) @gigony
• add three segmentation metrics (#425) @grlee77
• add isotropic binary morphology functions (#421) @grlee77
• Add blob feature detectors (blob_dog, blob_log, blob_doh) (#413) @monzelr

🛠️ Improvements

• additional minor updates (skimage 0.20) (#455) @grlee77
• Implement additional deprecations carried out for scikit-image 0.20 (#451) @grlee77
• Faster hessian_matrix_* and structure_tensor_eigvals via analytical eigenvalues for the 3D case (#434) @grlee77
• use fused kernels to reduce overhead in corner detector implementations (#426) @grlee77
• Misc updates for consistency with scikit-image 0.20 (#424) @grlee77
• improved implementation of ridge filters (bug fixes and reduced memory footprint) (#423) @grlee77
• analytical moments computations, support pixel spacings in moments and regionprops (#422) @grlee77
• Forward merge branch-22.10 to branch-22.12 (#420) @grlee77
• Support sampling kwarg for distance_transform_edt (take pixel/voxel sizes into account) (#407) @grlee77
• Improve performance of Euclidean distance transform (#406) @grlee77

v22.10.00

🐛 Bug Fixes

• Correctly use dtype when computing shared memory requirements of separable convolution (#409) @grlee77
• Forward-merge branch-22.08 to branch-22.10 (#403) @jakirkham
• Add missing imports of euler_number and perimeter_crofton (#386) @grlee77

📖 Documentation

• update pypi CHANGELOG.md for releases 22.08.00 and 22.08.01 (#404) @grlee77
• Update README.md (#396) @HesAnEasyCoder

🚀 New Features

• Allow cupy 11 (#399) @galipremsagar
• Add cucim.skimage.feature.match_descriptors (#338) @grlee77

🛠️ Improvements

• Merge docs and add links (#415) @jakirkham
• Add benchmarks for scikit-image functions introduced in 22.08 (#378) @grlee77

v22.08.01

This release fixes a bug in the 2D Euclidean distance transform for larger images.

🐛 Bug Fixes

• Euclidean distance transform: fix bad choice of block parameters (#393) @grlee77

v22.08.00

🚨 Breaking Changes

• Stain extraction: use a less strict condition across channels when thresholding (#316) @grlee77

🐛 Bug Fixes

• create SimilarityTransform using CuPy 9.x-compatible indexing (#365) @grlee77
• Add __init__.py in cucim.core (#359) @jakirkham
• Stain extraction: use a less strict condition across channels when thresholding (#316) @grlee77
• Incorporate bug fixes from skimage 0.19.3 (#312) @grlee77
• fix RawKernel bug for canny filter when quantiles are used (#310) @grlee77

📖 Documentation

• Defer loading of custom.js (#383) @galipremsagar
• add cucim.core.morphology to API docs + other docstring fixes (#367) @grlee77
• Update README.md (#361) @HesAnEasyCoder
• remove unimplemented functions from See Also and fix version numbers in deprecation warnings (#356) @grlee77
• Forward-merge branch-22.06 to branch-22.08 (#344) @grlee77
• Update README.md (#315) @HesAnEasyCoder
• Update index.rst (#314) @HesAnEasyCoder
• Update PyPI package documentation for v22.06.00 (#311) @gigony

🚀 New Features

• Add segmentation with the Chan-Vese active contours method (#343) @grlee77
• Add cucim.skimage.morphology.medial_axis (#342) @grlee77
• Add cucim.skimage.segmentation.expand_labels (#341) @grlee77
• Add Euclidean distance transform for images/volumes (#318) @grlee77

🛠️ Improvements

• Revert "Allow CuPy 11" (#362) @galipremsagar
• Fix issues with day & night modes in python docs (#360) @galipremsagar
• Allow CuPy 11 (#357) @jakirkham
• more efficient separable convolution (#355) @grlee77
• Support resolution and spacing metadata (#349) @gigony
• Performance optimizations to morphological segmentation functions (#340) @grlee77
• benchmarks: avoid use of deprecated pandas API (#339) @grlee77
• Reduce memory overhead and improve performance of normalize_colors_pca (#328) @grlee77
• Protect against obscure divide by zero error in edge case of normalize_colors_pca (#327) @grlee77
• complete parametrization of cucim.skimage benchmarks (#324) @grlee77
• parameterization of filters and features benchmarks (v2) (#322) @grlee77
• Add a fast histogram-based median filter (#317) @grlee77
• Remove custom compiler environment variables (#307) @ajschmidt8