diff --git a/.github/workflows/build_jar.yml b/.github/workflows/build_jar.yml index e2eae0f8..977b8cc8 100644 --- a/.github/workflows/build_jar.yml +++ b/.github/workflows/build_jar.yml @@ -18,7 +18,9 @@ - name: Grant execute permission for gradlew run: chmod +x gradlew - name: Grant execute permission for OMERO server setup script - run: chmod +x src/test/resources/qupath/ext/omero/setupOmeroServer.sh + run: chmod +x src/test/resources/omero-server/setup.sh + - name: Grant execute permission for OMERO web setup script + run: chmod +x src/test/resources/omero-web/setup.sh - name: Build with Gradle run: ./gradlew build -P toolchain=11 - uses: actions/upload-artifact@v2 diff --git a/.github/workflows/gradle.yml b/.github/workflows/gradle.yml index 3a6a785e..9f1f318f 100644 --- a/.github/workflows/gradle.yml +++ b/.github/workflows/gradle.yml @@ -18,6 +18,8 @@ - name: Grant execute permission for gradlew run: chmod +x gradlew - name: Grant execute permission for OMERO server setup script - run: chmod +x src/test/resources/qupath/ext/omero/setupOmeroServer.sh + run: chmod +x src/test/resources/omero-server/setup.sh + - name: Grant execute permission for OMERO web setup script + run: chmod +x src/test/resources/omero-web/setup.sh - name: Build with Gradle run: ./gradlew build -P toolchain=11 diff --git a/.gitignore b/.gitignore index 5363926a..b83b9daf 100644 --- a/.gitignore +++ b/.gitignore @@ -35,4 +35,3 @@ hs_err*.log *.swp *~.nib *thumbs.db -bin/ diff --git a/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer b/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer new file mode 100755 index 00000000..628614e2 --- /dev/null +++ b/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer @@ -0,0 +1,243 @@ +#!/bin/sh + +# +# Copyright © 2015-2021 the original authors. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# https://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +############################################################################## +# +# omero-ms-pixel-buffer start up script for POSIX generated by Gradle. +# +# Important for running: +# +# (1) You need a POSIX-compliant shell to run this script. If your /bin/sh is +# noncompliant, but you have some other compliant shell such as ksh or +# bash, then to run this script, type that shell name before the whole +# command line, like: +# +# ksh omero-ms-pixel-buffer +# +# Busybox and similar reduced shells will NOT work, because this script +# requires all of these POSIX shell features: +# * functions; +# * expansions «$var», «${var}», «${var:-default}», «${var+SET}», +# «${var#prefix}», «${var%suffix}», and «$( cmd )»; +# * compound commands having a testable exit status, especially «case»; +# * various built-in commands including «command», «set», and «ulimit». +# +# Important for patching: +# +# (2) This script targets any POSIX shell, so it avoids extensions provided +# by Bash, Ksh, etc; in particular arrays are avoided. +# +# The "traditional" practice of packing multiple parameters into a +# space-separated string is a well documented source of bugs and security +# problems, so this is (mostly) avoided, by progressively accumulating +# options in "$@", and eventually passing that to Java. +# +# Where the inherited environment variables (DEFAULT_JVM_OPTS, JAVA_OPTS, +# and OMERO_MS_PIXEL_BUFFER_OPTS) rely on word-splitting, this is performed explicitly; +# see the in-line comments for details. +# +# There are tweaks for specific operating systems such as AIX, CygWin, +# Darwin, MinGW, and NonStop. +# +# (3) This script is generated from the Groovy template +# https://github.com/gradle/gradle/blob/HEAD/subprojects/plugins/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt +# within the Gradle project. +# +# You can find Gradle at https://github.com/gradle/gradle/. +# +############################################################################## + +# Attempt to set APP_HOME + +# Resolve links: $0 may be a link +app_path=$0 + +# Need this for daisy-chained symlinks. +while + APP_HOME=${app_path%"${app_path##*/}"} # leaves a trailing /; empty if no leading path + [ -h "$app_path" ] +do + ls=$( ls -ld "$app_path" ) + link=${ls#*' -> '} + case $link in #( + /*) app_path=$link ;; #( + *) app_path=$APP_HOME$link ;; + esac +done + +# This is normally unused +# shellcheck disable=SC2034 +APP_BASE_NAME=${0##*/} +APP_HOME=$( cd "${APP_HOME:-./}.." && pwd -P ) || exit + +# Add default JVM options here. You can also use JAVA_OPTS and OMERO_MS_PIXEL_BUFFER_OPTS to pass JVM options to this script. +DEFAULT_JVM_OPTS='"-Dvertx.logger-delegate-factory-class-name=io.vertx.core.logging.SLF4JLogDelegateFactory"' + +# Use the maximum available, or set MAX_FD != -1 to use that value. +MAX_FD=maximum + +warn () { + echo "$*" +} >&2 + +die () { + echo + echo "$*" + echo + exit 1 +} >&2 + +# OS specific support (must be 'true' or 'false'). +cygwin=false +msys=false +darwin=false +nonstop=false +case "$( uname )" in #( + CYGWIN* ) cygwin=true ;; #( + Darwin* ) darwin=true ;; #( + MSYS* | MINGW* ) msys=true ;; #( + NONSTOP* ) nonstop=true ;; +esac + +CLASSPATH=$APP_HOME/lib/omero-ms-pixel-buffer-0.6.3.jar:$APP_HOME/lib/simpleclient_vertx-0.6.0.jar:$APP_HOME/lib/omero-ms-core-0.7.0.jar:$APP_HOME/lib/brave-instrumentation-http-5.6.8.jar:$APP_HOME/lib/brave-5.6.8.jar:$APP_HOME/lib/brave-http-4.13.6.jar:$APP_HOME/lib/zipkin-sender-okhttp3-2.10.0.jar:$APP_HOME/lib/omero-blitz-5.6.2.jar:$APP_HOME/lib/omero-server-5.6.7.jar:$APP_HOME/lib/omero-renderer-5.5.12.jar:$APP_HOME/lib/omero-romio-5.7.2.jar:$APP_HOME/lib/omero-common-5.6.1.jar:$APP_HOME/lib/metrics-logback-3.0.2.jar:$APP_HOME/lib/logback-classic-1.2.11.jar:$APP_HOME/lib/log4j-over-slf4j-1.7.32.jar:$APP_HOME/lib/vertx-web-3.8.1.jar:$APP_HOME/lib/vertx-config-yaml-3.8.1.jar:$APP_HOME/lib/vertx-config-3.8.1.jar:$APP_HOME/lib/collector-0.12.0.jar:$APP_HOME/lib/simpleclient_hotspot-0.8.0.jar:$APP_HOME/lib/icegrid-3.6.5.jar:$APP_HOME/lib/simpleclient_common-0.6.0.jar:$APP_HOME/lib/simpleclient-0.8.0.jar:$APP_HOME/lib/brave-core-4.13.6.jar:$APP_HOME/lib/zipkin-reporter-2.10.0.jar:$APP_HOME/lib/zipkin-2.15.0.jar:$APP_HOME/lib/omero-model-5.6.10.jar:$APP_HOME/lib/formats-gpl-6.12.0.jar:$APP_HOME/lib/formats-bsd-6.12.0.jar:$APP_HOME/lib/formats-api-6.12.0.jar:$APP_HOME/lib/ome-xml-6.3.2.jar:$APP_HOME/lib/metakit-5.3.5.jar:$APP_HOME/lib/ome-poi-5.3.7.jar:$APP_HOME/lib/ome-codecs-0.4.4.jar:$APP_HOME/lib/ome-common-6.0.14.jar:$APP_HOME/lib/minio-5.0.2.jar:$APP_HOME/lib/okhttp-3.14.2.jar:$APP_HOME/lib/logback-core-1.2.11.jar:$APP_HOME/lib/calcite-core-1.20.0.jar:$APP_HOME/lib/spring-security-ldap-4.2.4.RELEASE.jar:$APP_HOME/lib/spring-ldap-core-2.3.2.RELEASE.jar:$APP_HOME/lib/avatica-core-1.15.0.jar:$APP_HOME/lib/json-path-2.4.0.jar:$APP_HOME/lib/avatica-metrics-1.15.0.jar:$APP_HOME/lib/metrics-graphite-3.0.2.jar:$APP_HOME/lib/metrics-jvm-3.0.2.jar:$APP_HOME/lib/metrics-core-3.0.2.jar:$APP_HOME/lib/hibernate-search-3.4.2.Final.jar:$APP_HOME/lib/hibernate-core-3.6.10.Final.jar:$APP_HOME/lib/bufr-3.0.jar:$APP_HOME/lib/hibernate-commons-annotations-3.2.0.Final.jar:$APP_HOME/lib/hibernate-search-analyzers-3.4.2.Final.jar:$APP_HOME/lib/cdm-core-5.3.3.jar:$APP_HOME/lib/jxrlib-all-0.2.4.jar:$APP_HOME/lib/native-lib-loader-2.1.4.jar:$APP_HOME/lib/httpservices-5.3.3.jar:$APP_HOME/lib/solr-analysis-extras-3.1.0.jar:$APP_HOME/lib/solr-core-3.1.0.jar:$APP_HOME/lib/solr-solrj-3.1.0.jar:$APP_HOME/lib/slf4j-api-1.7.32.jar:$APP_HOME/lib/lettuce-core-5.2.0.RELEASE.jar:$APP_HOME/lib/vertx-jdbc-client-3.8.1.jar:$APP_HOME/lib/kaitai-struct-runtime-0.8.jar:$APP_HOME/lib/aggdesigner-algorithm-6.0.jar:$APP_HOME/lib/commons-lang-2.6.jar:$APP_HOME/lib/vertx-web-common-3.8.1.jar:$APP_HOME/lib/vertx-auth-common-3.8.1.jar:$APP_HOME/lib/vertx-bridge-common-3.8.1.jar:$APP_HOME/lib/vertx-sql-common-3.8.1.jar:$APP_HOME/lib/vertx-core-3.8.1.jar:$APP_HOME/lib/jackson-databind-2.14.1.jar:$APP_HOME/lib/jackson-annotations-2.14.1.jar:$APP_HOME/lib/esri-geometry-api-2.2.0.jar:$APP_HOME/lib/jackson-core-2.14.1.jar:$APP_HOME/lib/jackson-dataformat-yaml-2.14.1.jar:$APP_HOME/lib/javax.activation-1.2.0.jar:$APP_HOME/lib/snakeyaml-1.33.jar:$APP_HOME/lib/okio-1.17.2.jar:$APP_HOME/lib/glacier2-3.6.5.jar:$APP_HOME/lib/ice-3.6.5.jar:$APP_HOME/lib/netty-handler-proxy-4.1.39.Final.jar:$APP_HOME/lib/netty-codec-http2-4.1.39.Final.jar:$APP_HOME/lib/netty-codec-http-4.1.39.Final.jar:$APP_HOME/lib/netty-handler-4.1.42.Final.jar:$APP_HOME/lib/netty-resolver-dns-4.1.39.Final.jar:$APP_HOME/lib/netty-codec-socks-4.1.39.Final.jar:$APP_HOME/lib/netty-codec-dns-4.1.39.Final.jar:$APP_HOME/lib/netty-codec-4.1.42.Final.jar:$APP_HOME/lib/netty-transport-4.1.42.Final.jar:$APP_HOME/lib/netty-buffer-4.1.42.Final.jar:$APP_HOME/lib/netty-resolver-4.1.42.Final.jar:$APP_HOME/lib/netty-common-4.1.42.Final.jar:$APP_HOME/lib/reactor-core-3.3.0.RELEASE.jar:$APP_HOME/lib/c3p0-0.9.5.4.jar:$APP_HOME/lib/spring-context-support-4.3.22.RELEASE.jar:$APP_HOME/lib/spring-jms-4.3.14.RELEASE.jar:$APP_HOME/lib/postgresql-42.2.1.jar:$APP_HOME/lib/btm-3.0.0-mk1.jar:$APP_HOME/lib/javax.mail-1.6.2.jar:$APP_HOME/lib/jhdf5-19.04.0.jar:$APP_HOME/lib/base-18.09.0.jar:$APP_HOME/lib/commons-io-2.7.jar:$APP_HOME/lib/reactive-streams-1.0.3.jar:$APP_HOME/lib/mchange-commons-java-0.2.15.jar:$APP_HOME/lib/spring-messaging-4.3.14.RELEASE.jar:$APP_HOME/lib/spring-orm-4.3.14.RELEASE.jar:$APP_HOME/lib/spring-jdbc-4.3.14.RELEASE.jar:$APP_HOME/lib/spring-tx-4.3.14.RELEASE.jar:$APP_HOME/lib/spring-security-core-4.2.4.RELEASE.jar:$APP_HOME/lib/spring-context-4.3.22.RELEASE.jar:$APP_HOME/lib/spring-aop-4.3.22.RELEASE.jar:$APP_HOME/lib/spring-beans-4.3.22.RELEASE.jar:$APP_HOME/lib/spring-expression-4.3.22.RELEASE.jar:$APP_HOME/lib/spring-core-4.3.22.RELEASE.jar:$APP_HOME/lib/calcite-linq4j-1.20.0.jar:$APP_HOME/lib/guava-29.0-jre.jar:$APP_HOME/lib/sketches-core-0.9.0.jar:$APP_HOME/lib/janino-3.0.11.jar:$APP_HOME/lib/commons-compiler-3.0.11.jar:$APP_HOME/lib/activation-1.1.jar:$APP_HOME/lib/commons-logging-1.2.jar:$APP_HOME/lib/aopalliance-1.0.jar:$APP_HOME/lib/protobuf-java-3.6.1.jar:$APP_HOME/lib/memory-0.9.0.jar:$APP_HOME/lib/udunits-4.5.5.jar:$APP_HOME/lib/antlr-2.7.6.jar:$APP_HOME/lib/commons-collections-3.1.jar:$APP_HOME/lib/dom4j-1.6.1.jar:$APP_HOME/lib/hibernate-jpa-2.0-api-1.0.1.Final.jar:$APP_HOME/lib/jta-1.1.jar:$APP_HOME/lib/lucene-smartcn-3.1.0.jar:$APP_HOME/lib/lucene-stempel-3.1.0.jar:$APP_HOME/lib/lucene-misc-3.1.0.jar:$APP_HOME/lib/lucene-spellchecker-3.1.0.jar:$APP_HOME/lib/lucene-analyzers-3.1.0.jar:$APP_HOME/lib/lucene-highlighter-3.1.0.jar:$APP_HOME/lib/lucene-memory-3.1.0.jar:$APP_HOME/lib/lucene-spatial-3.1.0.jar:$APP_HOME/lib/lucene-core-3.1.0.jar:$APP_HOME/lib/ome-mdbtools-5.3.2.jar:$APP_HOME/lib/JWlz-1.4.0.jar:$APP_HOME/lib/joda-time-2.10.3.jar:$APP_HOME/lib/kryo-4.0.2.jar:$APP_HOME/lib/json-20090211.jar:$APP_HOME/lib/sqlite-jdbc-3.28.0.jar:$APP_HOME/lib/jcip-annotations-1.0.jar:$APP_HOME/lib/specification-6.3.2.jar:$APP_HOME/lib/turbojpeg-6.12.0.jar:$APP_HOME/lib/jgoodies-forms-1.7.2.jar:$APP_HOME/lib/perf4j-0.9.16.jar:$APP_HOME/lib/xml-apis-1.4.01.jar:$APP_HOME/lib/re2j-1.3.jar:$APP_HOME/lib/reflectasm-1.11.3.jar:$APP_HOME/lib/minlog-1.3.0.jar:$APP_HOME/lib/objenesis-2.5.1.jar:$APP_HOME/lib/failureaccess-1.0.1.jar:$APP_HOME/lib/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar:$APP_HOME/lib/checker-qual-2.11.1.jar:$APP_HOME/lib/error_prone_annotations-2.3.4.jar:$APP_HOME/lib/j2objc-annotations-1.3.jar:$APP_HOME/lib/google-http-client-xml-1.20.0.jar:$APP_HOME/lib/ome-jai-0.1.3.jar:$APP_HOME/lib/aircompressor-0.21.jar:$APP_HOME/lib/jgoodies-common-1.7.0.jar:$APP_HOME/lib/asm-5.0.4.jar:$APP_HOME/lib/solr-commons-csv-3.1.0.jar:$APP_HOME/lib/google-http-client-1.20.0.jar:$APP_HOME/lib/xpp3-1.1.4c.jar + + +# Determine the Java command to use to start the JVM. +if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD=$JAVA_HOME/jre/sh/java + else + JAVACMD=$JAVA_HOME/bin/java + fi + if [ ! -x "$JAVACMD" ] ; then + die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME + +Please set the JAVA_HOME variable in your environment to match the +location of your Java installation." + fi +else + JAVACMD=java + which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. + +Please set the JAVA_HOME variable in your environment to match the +location of your Java installation." +fi + +# Increase the maximum file descriptors if we can. +if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then + case $MAX_FD in #( + max*) + # In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked. + # shellcheck disable=SC3045 + MAX_FD=$( ulimit -H -n ) || + warn "Could not query maximum file descriptor limit" + esac + case $MAX_FD in #( + '' | soft) :;; #( + *) + # In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked. + # shellcheck disable=SC3045 + ulimit -n "$MAX_FD" || + warn "Could not set maximum file descriptor limit to $MAX_FD" + esac +fi + +# Collect all arguments for the java command, stacking in reverse order: +# * args from the command line +# * the main class name +# * -classpath +# * -D...appname settings +# * --module-path (only if needed) +# * DEFAULT_JVM_OPTS, JAVA_OPTS, and OMERO_MS_PIXEL_BUFFER_OPTS environment variables. + +# For Cygwin or MSYS, switch paths to Windows format before running java +if "$cygwin" || "$msys" ; then + APP_HOME=$( cygpath --path --mixed "$APP_HOME" ) + CLASSPATH=$( cygpath --path --mixed "$CLASSPATH" ) + + JAVACMD=$( cygpath --unix "$JAVACMD" ) + + # Now convert the arguments - kludge to limit ourselves to /bin/sh + for arg do + if + case $arg in #( + -*) false ;; # don't mess with options #( + /?*) t=${arg#/} t=/${t%%/*} # looks like a POSIX filepath + [ -e "$t" ] ;; #( + *) false ;; + esac + then + arg=$( cygpath --path --ignore --mixed "$arg" ) + fi + # Roll the args list around exactly as many times as the number of + # args, so each arg winds up back in the position where it started, but + # possibly modified. + # + # NB: a `for` loop captures its iteration list before it begins, so + # changing the positional parameters here affects neither the number of + # iterations, nor the values presented in `arg`. + shift # remove old arg + set -- "$@" "$arg" # push replacement arg + done +fi + +# Collect all arguments for the java command; +# * $DEFAULT_JVM_OPTS, $JAVA_OPTS, and $OMERO_MS_PIXEL_BUFFER_OPTS can contain fragments of +# shell script including quotes and variable substitutions, so put them in +# double quotes to make sure that they get re-expanded; and +# * put everything else in single quotes, so that it's not re-expanded. + +set -- \ + -classpath "$CLASSPATH" \ + io.vertx.core.Launcher \ + "$@" + +# Stop when "xargs" is not available. +if ! command -v xargs >/dev/null 2>&1 +then + die "xargs is not available" +fi + +# Use "xargs" to parse quoted args. +# +# With -n1 it outputs one arg per line, with the quotes and backslashes removed. +# +# In Bash we could simply go: +# +# readarray ARGS < <( xargs -n1 <<<"$var" ) && +# set -- "${ARGS[@]}" "$@" +# +# but POSIX shell has neither arrays nor command substitution, so instead we +# post-process each arg (as a line of input to sed) to backslash-escape any +# character that might be a shell metacharacter, then use eval to reverse +# that process (while maintaining the separation between arguments), and wrap +# the whole thing up as a single "set" statement. +# +# This will of course break if any of these variables contains a newline or +# an unmatched quote. +# + +eval "set -- $( + printf '%s\n' "$DEFAULT_JVM_OPTS $JAVA_OPTS $OMERO_MS_PIXEL_BUFFER_OPTS" | + xargs -n1 | + sed ' s~[^-[:alnum:]+,./:=@_]~\\&~g; ' | + tr '\n' ' ' + )" '"$@"' + +exec "$JAVACMD" "$@" diff --git a/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer.bat b/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer.bat new file mode 100755 index 00000000..b2084a2e --- /dev/null +++ b/src/test/resources/omero-web/omero-ms-pixel-buffer/bin/omero-ms-pixel-buffer.bat @@ -0,0 +1,92 @@ +@rem +@rem Copyright 2015 the original author or authors. +@rem +@rem Licensed under the Apache License, Version 2.0 (the "License"); +@rem you may not use this file except in compliance with the License. +@rem You may obtain a copy of the License at +@rem +@rem https://www.apache.org/licenses/LICENSE-2.0 +@rem +@rem Unless required by applicable law or agreed to in writing, software +@rem distributed under the License is distributed on an "AS IS" BASIS, +@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +@rem See the License for the specific language governing permissions and +@rem limitations under the License. +@rem + +@if "%DEBUG%"=="" @echo off +@rem ########################################################################## +@rem +@rem omero-ms-pixel-buffer startup script for Windows +@rem +@rem ########################################################################## + +@rem Set local scope for the variables with windows NT shell +if "%OS%"=="Windows_NT" setlocal + +set DIRNAME=%~dp0 +if "%DIRNAME%"=="" set DIRNAME=. +@rem This is normally unused +set APP_BASE_NAME=%~n0 +set APP_HOME=%DIRNAME%.. + +@rem Resolve any "." and ".." in APP_HOME to make it shorter. +for %%i in ("%APP_HOME%") do set APP_HOME=%%~fi + +@rem Add default JVM options here. You can also use JAVA_OPTS and OMERO_MS_PIXEL_BUFFER_OPTS to pass JVM options to this script. +set DEFAULT_JVM_OPTS="-Dvertx.logger-delegate-factory-class-name=io.vertx.core.logging.SLF4JLogDelegateFactory" + +@rem Find java.exe +if defined JAVA_HOME goto findJavaFromJavaHome + +set JAVA_EXE=java.exe +%JAVA_EXE% -version >NUL 2>&1 +if %ERRORLEVEL% equ 0 goto execute + +echo. +echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:findJavaFromJavaHome +set JAVA_HOME=%JAVA_HOME:"=% +set JAVA_EXE=%JAVA_HOME%/bin/java.exe + +if exist "%JAVA_EXE%" goto execute + +echo. +echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% +echo. +echo Please set the JAVA_HOME variable in your environment to match the +echo location of your Java installation. + +goto fail + +:execute +@rem Setup the command line + +set CLASSPATH=%APP_HOME%\lib\omero-ms-pixel-buffer-0.6.3.jar;%APP_HOME%\lib\simpleclient_vertx-0.6.0.jar;%APP_HOME%\lib\omero-ms-core-0.7.0.jar;%APP_HOME%\lib\brave-instrumentation-http-5.6.8.jar;%APP_HOME%\lib\brave-5.6.8.jar;%APP_HOME%\lib\brave-http-4.13.6.jar;%APP_HOME%\lib\zipkin-sender-okhttp3-2.10.0.jar;%APP_HOME%\lib\omero-blitz-5.6.2.jar;%APP_HOME%\lib\omero-server-5.6.7.jar;%APP_HOME%\lib\omero-renderer-5.5.12.jar;%APP_HOME%\lib\omero-romio-5.7.2.jar;%APP_HOME%\lib\omero-common-5.6.1.jar;%APP_HOME%\lib\metrics-logback-3.0.2.jar;%APP_HOME%\lib\logback-classic-1.2.11.jar;%APP_HOME%\lib\log4j-over-slf4j-1.7.32.jar;%APP_HOME%\lib\vertx-web-3.8.1.jar;%APP_HOME%\lib\vertx-config-yaml-3.8.1.jar;%APP_HOME%\lib\vertx-config-3.8.1.jar;%APP_HOME%\lib\collector-0.12.0.jar;%APP_HOME%\lib\simpleclient_hotspot-0.8.0.jar;%APP_HOME%\lib\icegrid-3.6.5.jar;%APP_HOME%\lib\simpleclient_common-0.6.0.jar;%APP_HOME%\lib\simpleclient-0.8.0.jar;%APP_HOME%\lib\brave-core-4.13.6.jar;%APP_HOME%\lib\zipkin-reporter-2.10.0.jar;%APP_HOME%\lib\zipkin-2.15.0.jar;%APP_HOME%\lib\omero-model-5.6.10.jar;%APP_HOME%\lib\formats-gpl-6.12.0.jar;%APP_HOME%\lib\formats-bsd-6.12.0.jar;%APP_HOME%\lib\formats-api-6.12.0.jar;%APP_HOME%\lib\ome-xml-6.3.2.jar;%APP_HOME%\lib\metakit-5.3.5.jar;%APP_HOME%\lib\ome-poi-5.3.7.jar;%APP_HOME%\lib\ome-codecs-0.4.4.jar;%APP_HOME%\lib\ome-common-6.0.14.jar;%APP_HOME%\lib\minio-5.0.2.jar;%APP_HOME%\lib\okhttp-3.14.2.jar;%APP_HOME%\lib\logback-core-1.2.11.jar;%APP_HOME%\lib\calcite-core-1.20.0.jar;%APP_HOME%\lib\spring-security-ldap-4.2.4.RELEASE.jar;%APP_HOME%\lib\spring-ldap-core-2.3.2.RELEASE.jar;%APP_HOME%\lib\avatica-core-1.15.0.jar;%APP_HOME%\lib\json-path-2.4.0.jar;%APP_HOME%\lib\avatica-metrics-1.15.0.jar;%APP_HOME%\lib\metrics-graphite-3.0.2.jar;%APP_HOME%\lib\metrics-jvm-3.0.2.jar;%APP_HOME%\lib\metrics-core-3.0.2.jar;%APP_HOME%\lib\hibernate-search-3.4.2.Final.jar;%APP_HOME%\lib\hibernate-core-3.6.10.Final.jar;%APP_HOME%\lib\bufr-3.0.jar;%APP_HOME%\lib\hibernate-commons-annotations-3.2.0.Final.jar;%APP_HOME%\lib\hibernate-search-analyzers-3.4.2.Final.jar;%APP_HOME%\lib\cdm-core-5.3.3.jar;%APP_HOME%\lib\jxrlib-all-0.2.4.jar;%APP_HOME%\lib\native-lib-loader-2.1.4.jar;%APP_HOME%\lib\httpservices-5.3.3.jar;%APP_HOME%\lib\solr-analysis-extras-3.1.0.jar;%APP_HOME%\lib\solr-core-3.1.0.jar;%APP_HOME%\lib\solr-solrj-3.1.0.jar;%APP_HOME%\lib\slf4j-api-1.7.32.jar;%APP_HOME%\lib\lettuce-core-5.2.0.RELEASE.jar;%APP_HOME%\lib\vertx-jdbc-client-3.8.1.jar;%APP_HOME%\lib\kaitai-struct-runtime-0.8.jar;%APP_HOME%\lib\aggdesigner-algorithm-6.0.jar;%APP_HOME%\lib\commons-lang-2.6.jar;%APP_HOME%\lib\vertx-web-common-3.8.1.jar;%APP_HOME%\lib\vertx-auth-common-3.8.1.jar;%APP_HOME%\lib\vertx-bridge-common-3.8.1.jar;%APP_HOME%\lib\vertx-sql-common-3.8.1.jar;%APP_HOME%\lib\vertx-core-3.8.1.jar;%APP_HOME%\lib\jackson-databind-2.14.1.jar;%APP_HOME%\lib\jackson-annotations-2.14.1.jar;%APP_HOME%\lib\esri-geometry-api-2.2.0.jar;%APP_HOME%\lib\jackson-core-2.14.1.jar;%APP_HOME%\lib\jackson-dataformat-yaml-2.14.1.jar;%APP_HOME%\lib\javax.activation-1.2.0.jar;%APP_HOME%\lib\snakeyaml-1.33.jar;%APP_HOME%\lib\okio-1.17.2.jar;%APP_HOME%\lib\glacier2-3.6.5.jar;%APP_HOME%\lib\ice-3.6.5.jar;%APP_HOME%\lib\netty-handler-proxy-4.1.39.Final.jar;%APP_HOME%\lib\netty-codec-http2-4.1.39.Final.jar;%APP_HOME%\lib\netty-codec-http-4.1.39.Final.jar;%APP_HOME%\lib\netty-handler-4.1.42.Final.jar;%APP_HOME%\lib\netty-resolver-dns-4.1.39.Final.jar;%APP_HOME%\lib\netty-codec-socks-4.1.39.Final.jar;%APP_HOME%\lib\netty-codec-dns-4.1.39.Final.jar;%APP_HOME%\lib\netty-codec-4.1.42.Final.jar;%APP_HOME%\lib\netty-transport-4.1.42.Final.jar;%APP_HOME%\lib\netty-buffer-4.1.42.Final.jar;%APP_HOME%\lib\netty-resolver-4.1.42.Final.jar;%APP_HOME%\lib\netty-common-4.1.42.Final.jar;%APP_HOME%\lib\reactor-core-3.3.0.RELEASE.jar;%APP_HOME%\lib\c3p0-0.9.5.4.jar;%APP_HOME%\lib\spring-context-support-4.3.22.RELEASE.jar;%APP_HOME%\lib\spring-jms-4.3.14.RELEASE.jar;%APP_HOME%\lib\postgresql-42.2.1.jar;%APP_HOME%\lib\btm-3.0.0-mk1.jar;%APP_HOME%\lib\javax.mail-1.6.2.jar;%APP_HOME%\lib\jhdf5-19.04.0.jar;%APP_HOME%\lib\base-18.09.0.jar;%APP_HOME%\lib\commons-io-2.7.jar;%APP_HOME%\lib\reactive-streams-1.0.3.jar;%APP_HOME%\lib\mchange-commons-java-0.2.15.jar;%APP_HOME%\lib\spring-messaging-4.3.14.RELEASE.jar;%APP_HOME%\lib\spring-orm-4.3.14.RELEASE.jar;%APP_HOME%\lib\spring-jdbc-4.3.14.RELEASE.jar;%APP_HOME%\lib\spring-tx-4.3.14.RELEASE.jar;%APP_HOME%\lib\spring-security-core-4.2.4.RELEASE.jar;%APP_HOME%\lib\spring-context-4.3.22.RELEASE.jar;%APP_HOME%\lib\spring-aop-4.3.22.RELEASE.jar;%APP_HOME%\lib\spring-beans-4.3.22.RELEASE.jar;%APP_HOME%\lib\spring-expression-4.3.22.RELEASE.jar;%APP_HOME%\lib\spring-core-4.3.22.RELEASE.jar;%APP_HOME%\lib\calcite-linq4j-1.20.0.jar;%APP_HOME%\lib\guava-29.0-jre.jar;%APP_HOME%\lib\sketches-core-0.9.0.jar;%APP_HOME%\lib\janino-3.0.11.jar;%APP_HOME%\lib\commons-compiler-3.0.11.jar;%APP_HOME%\lib\activation-1.1.jar;%APP_HOME%\lib\commons-logging-1.2.jar;%APP_HOME%\lib\aopalliance-1.0.jar;%APP_HOME%\lib\protobuf-java-3.6.1.jar;%APP_HOME%\lib\memory-0.9.0.jar;%APP_HOME%\lib\udunits-4.5.5.jar;%APP_HOME%\lib\antlr-2.7.6.jar;%APP_HOME%\lib\commons-collections-3.1.jar;%APP_HOME%\lib\dom4j-1.6.1.jar;%APP_HOME%\lib\hibernate-jpa-2.0-api-1.0.1.Final.jar;%APP_HOME%\lib\jta-1.1.jar;%APP_HOME%\lib\lucene-smartcn-3.1.0.jar;%APP_HOME%\lib\lucene-stempel-3.1.0.jar;%APP_HOME%\lib\lucene-misc-3.1.0.jar;%APP_HOME%\lib\lucene-spellchecker-3.1.0.jar;%APP_HOME%\lib\lucene-analyzers-3.1.0.jar;%APP_HOME%\lib\lucene-highlighter-3.1.0.jar;%APP_HOME%\lib\lucene-memory-3.1.0.jar;%APP_HOME%\lib\lucene-spatial-3.1.0.jar;%APP_HOME%\lib\lucene-core-3.1.0.jar;%APP_HOME%\lib\ome-mdbtools-5.3.2.jar;%APP_HOME%\lib\JWlz-1.4.0.jar;%APP_HOME%\lib\joda-time-2.10.3.jar;%APP_HOME%\lib\kryo-4.0.2.jar;%APP_HOME%\lib\json-20090211.jar;%APP_HOME%\lib\sqlite-jdbc-3.28.0.jar;%APP_HOME%\lib\jcip-annotations-1.0.jar;%APP_HOME%\lib\specification-6.3.2.jar;%APP_HOME%\lib\turbojpeg-6.12.0.jar;%APP_HOME%\lib\jgoodies-forms-1.7.2.jar;%APP_HOME%\lib\perf4j-0.9.16.jar;%APP_HOME%\lib\xml-apis-1.4.01.jar;%APP_HOME%\lib\re2j-1.3.jar;%APP_HOME%\lib\reflectasm-1.11.3.jar;%APP_HOME%\lib\minlog-1.3.0.jar;%APP_HOME%\lib\objenesis-2.5.1.jar;%APP_HOME%\lib\failureaccess-1.0.1.jar;%APP_HOME%\lib\listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar;%APP_HOME%\lib\checker-qual-2.11.1.jar;%APP_HOME%\lib\error_prone_annotations-2.3.4.jar;%APP_HOME%\lib\j2objc-annotations-1.3.jar;%APP_HOME%\lib\google-http-client-xml-1.20.0.jar;%APP_HOME%\lib\ome-jai-0.1.3.jar;%APP_HOME%\lib\aircompressor-0.21.jar;%APP_HOME%\lib\jgoodies-common-1.7.0.jar;%APP_HOME%\lib\asm-5.0.4.jar;%APP_HOME%\lib\solr-commons-csv-3.1.0.jar;%APP_HOME%\lib\google-http-client-1.20.0.jar;%APP_HOME%\lib\xpp3-1.1.4c.jar + + +@rem Execute omero-ms-pixel-buffer +"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %OMERO_MS_PIXEL_BUFFER_OPTS% -classpath "%CLASSPATH%" io.vertx.core.Launcher %* + +:end +@rem End local scope for the variables with windows NT shell +if %ERRORLEVEL% equ 0 goto mainEnd + +:fail +rem Set variable OMERO_MS_PIXEL_BUFFER_EXIT_CONSOLE if you need the _script_ return code instead of +rem the _cmd.exe /c_ return code! +set EXIT_CODE=%ERRORLEVEL% +if %EXIT_CODE% equ 0 set EXIT_CODE=1 +if not ""=="%OMERO_MS_PIXEL_BUFFER_EXIT_CONSOLE%" exit %EXIT_CODE% +exit /b %EXIT_CODE% + +:mainEnd +if "%OS%"=="Windows_NT" endlocal + +:omega