From d02c15752d082f717304f1fc20547fb7ae60c344 Mon Sep 17 00:00:00 2001 From: Alan O'Callaghan Date: Wed, 7 Feb 2024 13:55:14 +0000 Subject: [PATCH] Instructions --- README.md | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 52db772..0d31c7a 100644 --- a/README.md +++ b/README.md @@ -2,13 +2,17 @@ Development setup: -- Clone my qupath fork https://github.com/alanocallaghan/qupath +- Clone Alan's qupath fork https://github.com/alanocallaghan/qupath - If you have the main qupath repo cloned already, you could add it as a remote `git add remote alan git@github.com:alanocallaghan/qupath.git && git fetch alan` - If you want to make a fresh clone, then continue, the following instructions should still work - Switch to branch `instanseg` - If you added a remote, then `git checkout instanseg` -- Clone this repo in the same directory -- Run QuPath -- Open extension -- Enter the path to the model file in "Downloaded model directory" (yes, I know, but for now :)) +- Clone this repo in the same directory as qupath, eg + - `git clone git@github.com:qupath/qupath-extension-instanseg.git` + - `git clone git@github.com:qupath/qupath-extension-djl.git` +- Enter the qupath folder `cd qupath` +- Run QuPath using `./gradlew run` +- Open extension (`extensions -> run instanseg`) +- Enter the path to the model `.pt` file(s) in "Downloaded model directory" +- Choose appropriate device/thread/tile size settings - Run...?