From 64a548e94cc4f3cd27d047c10cd1a4535aac5954 Mon Sep 17 00:00:00 2001
From: "Mathieu Boudreau, PhD" <emb6150@gmail.com>
Date: Tue, 17 Sep 2024 10:06:52 -0300
Subject: [PATCH] Create main.yml

---
 .github/workflows/main.yml | 53 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 53 insertions(+)
 create mode 100644 .github/workflows/main.yml

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
new file mode 100644
index 0000000..4a89219
--- /dev/null
+++ b/.github/workflows/main.yml
@@ -0,0 +1,53 @@
+name: deploy-book
+
+# Only run this when the v2 branch changes
+on:
+  push:
+    branches:
+    - main
+    # If your git repository has the Jupyter Book within some-subfolder next to
+    # unrelated files, you can make this run only if a file within that specific
+    # folder has been modified.
+    # paths:
+    # - source/**
+
+# This job installs dependencies, build the book, and pushes it to `gh-pages`
+jobs:
+  deploy-book:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+
+    # Install dependencies
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.8
+
+    - name: Install dependencies
+      run: |
+        conda create binder/environment.yml -n jh-env
+        
+        sudo apt install r-base
+        chmod +xxx binder/install.R
+        Rscript install.R
+    - name: Download data
+      run: |
+        cd content
+        repo2data -r ../binder/data_requirement.json
+        cd ..
+    - name: Postbuild
+      run: |
+        chmod +xxx binder/postBuild
+        binder/postBuild
+    # Build the book
+    - name: Build the book
+      run: |
+        conda activate jh-env
+        jupyter-book build content
+    # Push the book's HTML to github-pages
+    - name: GitHub Pages action
+      uses: peaceiris/actions-gh-pages@v3.6.1
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./content/_build/index/