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New OncoPubs exporter #1

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mbaudis opened this issue Dec 27, 2019 · 0 comments
Open

New OncoPubs exporter #1

mbaudis opened this issue Dec 27, 2019 · 0 comments
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mbaudis commented Dec 27, 2019

The changed document structure in the publications collection requires a new exporter script:

  • implement in Python
  • export as single YAML documents
  • options
    • provide input filter (PMID list, for a start)
    • use a template for output formatting (e.g. a schema file or ordered list of primary parameters) to provide consistent order in the output documents

A first (urgent) application is the deposition of the publications from the "cancer geographies" manuscript's analysis into the supplements repository.

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