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sumstats.py implement better deduplication in csv tool #22

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ofrei opened this issue Nov 30, 2017 · 0 comments
Open

sumstats.py implement better deduplication in csv tool #22

ofrei opened this issue Nov 30, 2017 · 0 comments

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@ofrei
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ofrei commented Nov 30, 2017 •
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  • if equal chr:pos:snp (but not a1:a2) --- lift (e.g. fix SNP column) based on chrposonref (dbSNP). Drop markers that don't match snpDB. This only applies to duplicated markers.
  • if equal chr:pos:a1:a2:snp, then take max p-value
@ofrei ofrei changed the title sumstats.py implement better deduplication sumstats.py implement better deduplication in csv tool Aug 16, 2018
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