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Protein complex terms to review #3802

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ValWood opened this issue Feb 28, 2025 · 1 comment
Open

Protein complex terms to review #3802

ValWood opened this issue Feb 28, 2025 · 1 comment
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@ValWood
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ValWood commented Feb 28, 2025

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geneontology/go-ontology#29819

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need a complex term, but we will keep this in for now

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geneontology/go-annotation#5688

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this has 2 paralogs as complex, so this is probably homo-dimer


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OK: Fungal and plant ureases are made up of identical subunits (~90 kDa each), most commonly assembled as trimers and hexamers.

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homomeric(2)(https://www.pombase.org/term/PBO:0015212)

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reannotated


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reannotated translocon
plus geneontology/go-annotation#5689

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removed, all are annotated to the correct complexes

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geneontology/go-annotation#5690
remove propagation

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unclear, removed both. SPAC458.02c returned to unknowns, conflicting annotation

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added vps5 by ISO

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needs checking

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removed

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this should be ok, all but uch2 are annotated to sub terms (not bona fida), but its ok for now.

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homodimer

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removed

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@ValWood ValWood self-assigned this Feb 28, 2025
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ValWood commented Feb 28, 2025

Once these complexes are reviewed:

  1. check file contents agree
  2. update complex file README
  3. announce changes to complex file (uniprot ID), improved content
  4. Tell people about the protein complex canned queries

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