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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

This project adheres to Semantic Versioning.

0.23.0 - 2021-01-19

Fixed

  • Structured interpolation method interpolating to area straddling Greenwich.
  • Fixes when compiling with ATLAS_BITS_LOCAL=64

Changed

  • Possibility to link to alternative open-source version of IFS trans library.

Added

  • Caching mechanism for interpolation

0.22.1 - 2020-10-22

Fixed

  • Installation of PGI compilers via tools/install-pgi.sh
  • Allow dependency on older Eigen 3.2 which does not use CMake targets

0.22.0 - 2020-10-14

Fixed

  • Feature INIT_SNAN was not working
  • Support KNearestNeighbour interpolation for functionspace with smaller halo than the mesh contains
  • Support array size up to size_t limit

Changed

  • Migration to use ecbuild 3.4
  • ATLAS_BITS_LOCAL can be configured to 32 or 64

Added

  • Fields can be created with given alignment, which adds padding in innermost dimension
  • Added conservative interpolation with "grid-box average" and "grid-box maximum"
  • Missing value definition for fields
  • Add support for missing values in matrix-based interpolation methods
  • Floating point trapping and signal handling mechanism
  • Fortran: GridDistribution constructors
  • Fortran: Domain access
  • Fortran: Get lonlat_bounding_box via domain
  • Possibility to access Jacobian of projections (with only some projections implemented)

0.21.0 - 2020-06-23

Fixed

  • Fixed Rotation order of applying the rotation angle
  • Fix nabla computation of surface vector fields
  • Fix registration and destruction issues of halo-exchange caches
  • Workaround Clang compiler problem with OpenMP tasking, using introspection
  • Fix bug in conversion of negative degrees to microdegrees
  • Fix problem in distribution of work amongst OpenMP threads in StructuredColumns::setup
  • Fix problem with StructuredColumns creation for grids defined with domains with negative West
  • Fix computation of Grid::lonlatBoundingBox for arbitrary projections crossing the dateline.

Changed

  • Snap LinearSpacing values to start and endpoint to allow exact comparisons
  • Improved performance and memory requirement of cropping of large StructuredGrids
  • Regional grids by default now have a positive y-numbering (previously negative).

Added

  • PolygonLocator based on functionspace partition polygons.
  • KDTree class which abstracts eckit concrete implementations, including Fortran interface
  • Geometry class with factory mechanism to configure which spheroid to use, including Fortran interface
  • StrcutredGrid function for i,j to index and inverse
  • Fortran interface to create StructuredColumns with custom distribution
  • Fortran interface to grid spec
  • Fortran interface to Projection
  • Adjoint of HaloExchange
  • Plugin mechanism to load plugins at runtime.
  • Fortran constructors for atlas_RegionalGrid
  • Fortran constructors for projected reduced Gaussian grids
  • Add copy constructor and assignment operator for atlas::vector
  • Mercator projection support for scaling, and operation on ellipsoid.
  • Grid Distribution can now also be created as a function, e.g. for Serial or Bands

0.20.2 - 2020-04-27

Fixed

  • Avoid 100ds of compilation warnings introduced in version 0.20.0

0.20.1 - 2020-04-08

Fixed

  • Make feature BOUNDSCHECKING work again. It was not turned on for DEBUG builds
  • Workaround clang OpenMP bug
  • Fix Segfault due to unexpected order of destruction of singleton objects

Added

  • atlas-grids tool can now be used to compute approximate North-South grid resolution

0.20.0 - 2020-03-06

Fixed

  • Pole edges hould not be created for global regular grids with points at poles
  • Update compatibility with more recent GridTools
  • HaloExchange with CUDA
  • Self registration from external library

Added

  • Proj-based projections
  • OpenMP functions for sorting, filling, copying
  • Parallel structured grid interpolation

Changed

  • Grid iterators can have random access
  • Speed improvements for StructuredColumns constructor
  • Speed improvements for LonLatPolygon::contains()
  • Port to ecbuild 3 (also minimum required version)
  • Tidying up of atlas tools

0.19.2 - 2020-01-28

Changed

  • Compatibility with eckit 1.7 due to API change in eckit::LocalConfiguration

0.19.1 - 2019-12-19

Fixed

  • Keep Gaussian identity of a Gaussian grid if a given domain does not crop any latitudes
  • Fix naming for LegendreCache, to be more specific, and platform independent

0.19.0 - 2019-10-01

Fixed

  • Lambert ( conformal conic ) projection xy coordinates are now corrected

Changed

  • LambertProjection renamed to LambertConformalConic

Added

  • Reordering of nodes strategies (Hilbert curve, ReverseCuthillMckee)
  • Preliminary CellColumns functionspace with Gmsh IO; halos are not yet fully supported

0.18.1 - 2019-08-10

Fixed

  • Match vertical structured interpolation to IFS
  • Fix in creating vertical dimension in StructuredColumns using interval
  • Fix in caching StructuredColumnsHaloExchange

0.18.0 - 2019-07-15

Changed

  • Make grid hashes crossplatform

Added

  • Fortran: Can now use TransLocal
  • Fortran: Can now create unstructured grids
  • LonLat Bounding box computations for grids using its projection
  • Serialisation of Mesh Connectivity tables to/from eckit::Stream

Fixed

  • Structured interpolation bugs
  • StructuredColumns bug with iSend
  • Memory corruption in Spectral functionspace with GT CUDA backend

0.17.2 - 2019-06-04

Fixed

  • Compilation with PGI 19.4
  • Structured Grid creation for periodic domains that do not start at 0 degrees longitude (Greenwich)

0.17.1 - 2019-04-22

Added

  • Option to declaration of field type (vector/scalar) when creating field in FunctionSpace
  • New projection: Lambert Azimuthal Equal Area
  • StructuredInterpolation2D to target FunctionSpace StructuredColumns

Fixed

  • Compilation with IBM XL 19
  • Compilation with Intel 19

0.17.0 - 2019-04-02

Changed

  • OpenMP is now private dependency
  • Dependencies are now added in a modern CMake3 way
  • Fortran modules are installed in /module/atlas

Added

  • Spectral functionspace better used in distributed context
  • Nabla now holds shared_ptr to Method
  • Fortran access to vertical coordinates from StructuredColumns

Fixed

  • Compilation with PGI/19.1 (regression)
  • Add missing halo_exchange for Fortran rank-4 arrays
  • Memory leaks with StructuredColumns

0.16.0 - 2019-02-14

Changed

  • Interpolation makes use of OpenMP
  • Cleanup of header includes
  • fypp Fortran preprocessor is ported to fckit 0.6

Added

  • Parallel structured interpolation methods (2D,3D): linear, cubic, quasicubic
  • Interpolation for multi-level and multi-variable fields
  • atlas_Trace: Fortran API and use within OpenMP parallel regions
  • StructuredColumns halo-exchange for vector fields
  • Field::halo_exchange() function

Fixed

  • Fortran compilation with PGI 18.10
  • Access to Field view within OpenMP parallel region
  • FunctionSpaces use only required halo, even if larger halo is available in mesh
  • Fixed faulty name of a Field when created through Fortran API, wrapping existing memory
  • Fix NodeColumns functionspace when mesh is created from projected grid.
  • Parallel interpolation from regular lonlat grid.
  • Spectral spherical harmonics transforms for large cases

0.15.2 - 2018-08-31

Changed

  • Initialisation of Fields to signalling NaN in debug builds, uninitialised in non-debug builds (used to be initialised to zero as part of std::vector construction)

Added

  • Implementation of cropped unstructured grids so that spectral transforms to unstructured grids are allowed

Fixed

  • Spectral transforms to grids including pole and equator
  • Build with gridtools CUDA backend

0.15.1 - 2018-07-17

Fixed

  • Compilation for Intel 18 debug
  • Memory bug for spherical harmonics
  • Compatibility with fckit 0.5.1

0.15.0 - 2018-06-19

Changed

  • Native Array data storage uses now a raw C pointer instead of std::vector
  • Significant performance improvements to Spherical harmonics transforms

Fixed

  • Various bugs related to parallel halos
  • Bit reproducibility for parallel interpolation

0.14.0 - 2018-03-22

Added

  • Spherical Harmonics transforms can receive a cache memory handle

Changed

  • Earth interface (C++)
  • Requires eckit 0.20.0, fckit 0.5.0

0.13.2 - 2018-03-20

Fixed

  • C++ compilation using PGI 17, 18 and GCC 7
  • Support Python 3 to generate Fortran bindings
  • Travis CI linked with github repository
  • Problem with CUDA allocated memory

0.13.1 - 2018-03-01

Fixed

  • Fortran compilation using Intel 18
  • GridTools compatibility

0.13.0 - 2018-02-16