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Pelagic_Ecology.nml
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! PelBac_parameters !-------------------------------------------------------------------------!
! PELAGIC BACTERIA
!
! NAME [UNIT]/KIND DESCRIPTION
! p_version integer Switch for bacteria parameterization
! 1 : Baretta-Bekker et al. 1995;
! Vichi et al., 2007
! 2 : Vichi et al., 2004
! 3 : Polimene et al., 2006
! p_q10 [-] Q10-value (temperature dependency)
! p_chdo [mmol/m3] Half-saturation constant for O2 limitation
! p_sd [1/d] Specific mortality rate
! p_sd2 [1/d] Density dependent specific mortality rate
! p_suhR1 [1/d] Specific potential uptake for nutrient-rich DOM
! p_sulR1 [1/d] Specific potential uptake for nutrient-poor DOM
! p_suR2 [1/d] Specific potential uptake for semi-labile DOC
! p_suR3 [1/d] Specific potential uptake for semi-refractory DOC
! p_suR6 [1/d] Specific potential uptake for POM (1/d)
! p_sum [1/d] Potential specific growth rate
! p_pu_ra [-] Activity respiration fraction
! p_pu_ra_o [-] Additional respiration fraction at low O2 conc
! p_srs [1/d] Specific rest respiration
! p_qncPBA [mmolN/mgC] Optimal N/C ratio
! p_qpcPBA [mmolP/mgC] Optimal P/C ratio
! p_qlnc [mmolN/mgC] Minimal N/C ratio
! p_qlpc [mmolP/mgC] Minimal P/C ratio
! p_qun [mmolN/mgC/day] Membrane affinity for N
! p_qup [mmolP/mgC/day] Membrane affinity for N
! p_chn [mmolN/m3] Half saturation ammonium conc. for uptake
! p_chp [mmolP/m3] Half saturation phosphate conc. for uptake
! p_ruen [1/d] Relaxation timescale for N uptake/remin.
! p_ruep [1/d] Relaxation timescale for P uptake/remin.
! p_rec [1/d] Relaxation timescale for semi-labile excretion
! p_pu_ea_R3 [-] Excretion of semi-refractory DOC
!-------------------------------------------------------------------------!
&PelBacteria_parameters
! B1
p_version = 1
p_q10 = 2.95
p_chdo = 30.0
p_sd = 0.1
p_sd2 = 0.0
p_suhR1 = 0.3
p_sulR1 = 0.0
p_suR2 = 0.0
p_suR3 = 0.0
p_suR6 = 0.01
p_sum = 8.38
p_pu_ra = 0.6
p_pu_ra_o = 0.2
p_srs = 0.01
p_qncPBA = 0.0167
p_qpcPBA = 0.00185
p_qlnc = 0.0167
p_qlpc = 0.00185
p_qun = 0.0
p_qup = 0.0
p_chn = 5.00
p_chp = 1.00
p_rec = 1.0
p_ruen = 1.0
p_ruep = 1.0
p_pu_ea_R3 = 0.0
/
! Phyto_parameters, Phyto_parameters_iron !-------------------------------------------------------------------------!
! PELAGIC PHYTOPLANKTON
! NAME [UNIT]/KIND DESCRIPTION
! : --------- Physiological parameters -----------------
! p_q10 [-] Characteristic Q10 coefficient
! p_qtemp [-] Cut-off threshold for temperature factor
! p_sum [1/d] Maximal productivity at 10 degrees C
! p_srs [1/d] Respiration rate at 10 degrees C
! p_sdmo [1/d] Max.specific nutrient-stress lysis rate
! p_thdo [-] Half saturation constant for nutrient stress lysis
! p_seo [1/d] Extra lysis rate (biomass density-dependent)
! p_sheo [mgC/3] Half saturation constant for extra lysis
! p_pu_ea [-] Excreted fraction of primary production
! p_pu_ra [-] Activity respiration fraction
! p_switchDOC [1-3] Switch for the type of DOC excretion
! This choice must be consistent with bacteria
! 1. All DOC is released as R1c (Vichi et al., 2007)
! 2. Activity DOC is released as R2c (Vichi et al., 2004)
! (there is no nutrient-stress excretion)
! 3. All DOC is released as R2c (Polimene et al., 2006)
!
! --------- Nutrient parameters in phytoplankton -----------------
! p_netgrowth [T or F] Logical switch for nutrient-limited growth
! .T. nutrient-balanced growth (Vichi et al.2004)
! .F. nutrient-stress carbon excretion
! (Baretta-Bekker et al.1995 and Vichi et al.2007)
! p_limnut [1-3] Switch for N-P co-limitation
! 0. Geometric mean
! 1. Threshold (Liebig-like)
! 2. Combined
! ---- N limitation control ----
! p_qun [m3/mgC/d] Membrane affinity for N
! p_lN4 [mmolN/m3] Half saturation constant for NH4 uptake preference over NO3
! p_qnlc [mmolN/mgC] Minimum quotum Si:C
! p_qncPPY [mmolN/mgC] Reference quotum Si:C
! p_xqn [-] Multiplication factor for luxury storage
! ---- P limitation control ----
! p_qup [m3/mgC/d] Membrane affinity for P
! p_qplc [mmolP/mgC] Minimum quotum Si:C
! p_qpcPPY [mmolP/mgC] Reference quotum Si:C
! p_xqp [-] Multiplication factor for luxury storage
! ---- Si limitation control ----
! p_switchSi [1-2] Switch for Silica limitation
! 1. Si limitation is controlled by external Si conc.
! 2. Si limitation is controlled by internal quota
! p_chPs [mmolSi/m3] Half saturation conc. for dissolved Si limitation
! p_Contois [>=0] If >0, use Contois formulation
! p_qus [m3/mgC/d] Membrane affinity for Si
! p_qslc [mmolSi/mgC] Minimum quotum Si:C
! p_qscPPY [mmolSi/mgC] Reference quotum Si:C
! Brzezinski (1985) 0.13 mol/mol
! ---- nutrient stressed sinking ----
! p_esNI [-] Nutrient stress threshold for sinking
! p_res [m/d] Maximum Sinking vel city (m/d)
! --------- Chlorophyll parameters -----------
! p_switchChl [1-4] Switch for Chla-a synthesis
! p_sdchl [1/d] Specific turnover rate for Chla
! p_alpha_chl [mgC s m2/ Initial slope of the P-E curve
! mgChl/uE]
! p_qlcPPY [mgChla/mgC] Reference quotum Chla:C
! p_epsChla [m2/mgChla] Chla-specific extinction coefficient
! p_tochl_relt [1/d] Relaxation rate towards maximum Chla:C
! p_EpEk_or [-] Optimal value of E_PAR/E_K
! --------- Iron parameters -----------
! p_quf [m3/mgC/d] Membrane affinity for Fe
! p_qflc [umolFe/mgC] Minimum quotum Fe:C derived from 3 umol Fe/mol C
! Sunda & Huntsman (1997), Nature, 390, p 389-392
! p_qfcPPY [umolFe/mgC] Reference quotum Fe:C
! p_xqf [-] Multiplication factor for luxury storage
! --------- Light parameters ERSEM-II -----------
! p_iswLtyp [0-6] Shape of the productivity function
! p_chELiPPY [W/m2] Maximum Iopt
! p_clELiPPY [W/m2] Minimum Iopt
! p_ruELiPPY [1/d] Maximum daily shift in Iopt (1/d)
! p_addepth [m] Adaptation depth. Meaningless with high-res models
! --------- Sinking parameters -----------
! p_rPIm [m/d] Phytoplankton background sinking rate
!-------------------------------------------------------------------------!
&Phyto_parameters
! P1 P2 P3 P4
p_q10 = 2.0 2.0 2.0 2.0
p_temp = 0.0 0.0 0.75 0.0
p_sum = 2.0 2.5 3.0 0.75
p_srs = 0.01 0.05 0.1 0.1
p_sdmo = 0.05 0.05 0.05 0.0
p_thdo = 0.1 0.1 0.1 0.1
p_seo = 0.0 0.0 0.0 0.0
p_sheo = 0.0 0.0 0.0 100.0
p_pu_ea = 0.05 0.2 0.2 0.05
p_pu_ra = 0.1 0.2 0.25 0.1
p_switchDOC = 1 1 1 1
p_netgrowth = .TRUE. .TRUE. .TRUE. .TRUE.
p_limnut = 1 1 1 1
p_qun = 0.025 0.025 0.25 0.025
p_lN4 = 1.0 1.0 0.0 1.0
p_qnlc = 4.193e-3 4.193e-3 4.193e-3 0.00687
p_qncPPY = 1.26e-2 1.26e-2 1.26e-2 1.26e-2
p_xqn = 2.0 2.0 2.0 2.0
p_qup = 0.025 0.025 0.25 0.025
p_qplc = 1.80e-4 1.80e-4 1.80e-4 4.29e-4
p_qpcPPY = 7.86e-4 7.86e-4 7.86e-4 7.86e-4
p_xqp = 2.0 2.0 2.0 2.0
p_switchSi = 1 0 0 0
p_chPs = 1.0 0.0 0.0 0.0
p_Contois = 0.0 0.0 0.0 0.0
p_qus = 0.0 0.0 0.0 0.0
p_qslc = 0.0 0.0 0.0 0.0
p_qscPPY = 0.01 0.0 0.0 0.0
p_esNI = 0.1 0.00 0.00 0.00
p_res = 5.0 0.0 0.0 0.0
p_switchChl = 1 1 1 1
p_sdchl = 0.2 0.2 0.2 0.2
p_alpha_chl = 1.38e-5 0.46e-5 1.52e-5 0.68e-5
p_qlcPPY = 0.025 0.015 0.02 0.02
p_epsChla = 0.03 0.03 0.03 0.03
p_EpEk_or = 0.0 0.0 0.0 0.0
p_tochl_relt = 0.0 0.0 0.0 0.0
p_iswLtyp = 5 5 5 5
p_addepth = 50.0 50.0 50.0 50.0
p_chELiPPY = 100.0 100.0 100.0 100.0
p_clELiPPY = 8.0 10.0 6.0 12.0
p_ruELiPPY = 0.2 0.25 0.3 0.15
p_rPIm = 0.0 0.0 0.0 0.0
/
&Phyto_parameters_iron
/
! MicroZoo_parameters !-------------------------------------------------------------------------!
! MICRO-ZOOPLANKTON
!
! NAME [UNIT]/KIND DESCRIPTION
! p_q10 [-] Q10 value for physiological rates
! p_srs [1/d] Respiration rate at 10 degrees Celsius
! p_sum [1/d] Potential growth rate
! p_sdo [1/d] Mortality rate due to oxygen limitation
! p_sd [1/d] Temperature independent mortality rate
! p_pu [-] Assimilation efficiency
! p_pu_ea [-] Fraction of activity excretion
! p_chro [mmolO2/m3] Half-saturation oxygen concentration
! p_chuc [mgC/m3] Half-saturation Food concentration for Type II
! p_minfood [mgC/m3] Half-saturation food concentration for
! preference factor
! p_qncMIZ [mmolN/mgC] Maximum quotum P:C
! p_qpcMIZ [mmolN/mgC] Maximum quotum N:C
! p_paPBA(z,b) [-] Availability of pelagic Bacteria group b
! to Zooplankton group z
! p_paPPY(z,p) [-] Availability of PhytoPlankton group p
! to Zooplankton group z
! p_paMIZ(z,m) [-] Availability of MicroZooplankton group m
! to Zooplankton group z
!-------------------------------------------------------------------------!
&MicroZoo_parameters
! Z5 Z6
p_q10 = 2.0 2.0
p_srs = 0.02 0.02
p_sum = 2.0 4.0
p_sdo = 0.25 0.25
p_sd = 0.05 0.05
p_pu = 0.6 0.5
p_pu_ea = 0.4 0.3
p_chro = 0.5 0.5
p_chuc = 20.0 20.0
p_minfood = 20.0 20.0
p_qpcMIZ = 1.85d-3 1.85d-3
p_qncMIZ = 1.67d-2 1.67d-2
p_paPBA = 0.1 0.9
! P1 P2 P3 P4
! Z5
p_paPPY(1,:) = 0.2 1.0 0.1 0.0
! Z6
p_paPPY(2,:) = 0.0 0.1 1.0 0.0
! Z5 Z6
! Z5
p_paMIZ(1,:) = 1.0 0.8
! Z6
p_paMIZ(2,:) = 0.0 0.2
/
! MesoZoo_parameters !-------------------------------------------------------------------------!
! MESO-ZOOPLANKTON
! NAME [UNIT]/KIND DESCRIPTION
! p_q10 [-] Q10 value for physiological rates
! p_srs [1/d] Respiration rate at 10 degrees C
! p_sum [1/d] Maximal productivity at 10 degrees C
! p_sd [1/d] Background natural mortality
! p_vum [m3/mgC/d] Specific search volume
! p_puI [-] Assimilation efficiency
! p_peI [-] Fraction of Faeces production
! p_sdo [m3/mgC/d] Specific density-dependent mortality
! p_sds [-] Exponent of density-dependent mortality
! p_qpcMEZ [mmolP/mgC] Maximum quotum P:C
! p_qncMEZ [mmolN/mgC] Maximum quotum N:C
! p_clO2o [mmolO2/m3] Half-saturation oxygen concentration
! p_paPPY(z,p) [-] Availability of PhytoPlankton group p
! to Zooplankton group z
! p_paMIZ(z,m) [-] Availability of MicroZooplankton group m
! to Zooplankton group z
! p_paMEZ(z,m) [-] Availability of MesoZooplankton group m
! to Zooplankton group z
!-------------------------------------------------------------------------!
&MesoZoo_parameters
! Z3 Z4
p_q10 = 2.0 2.0
p_srs = 0.01 0.02
p_sum = 2.0 2.0
p_vum = 0.025 0.025
p_puI = 0.6 0.6
p_peI = 0.3 0.35
p_sdo = 0.01 0.01
p_sd = 0.02 0.02
p_sds = 2.0 2.0
p_qpcMEZ = 1.67d-3 1.67d-3
p_qncMEZ = 0.015 0.015
p_clO2o = 30.0 30.0
! P1 P2 P3 P4
! Z3
p_paPPY(1,:) = 0.0 0.0 0.0 0.0
! Z4
p_paPPY(2,:) = 1.0 0.0 0.0 0.7
! Z5 Z6
! Z3
p_paMIZ(1,:) = 0.0 0.0
! Z4
p_paMIZ(2,:) = 1.0 0.0
! Z3 Z4
! Z3
p_paMEZ(1,:) = 1.0 1.0
! Z4
p_paMEZ(2,:) = 0.0 1.0
/
! PelBac_parameters !-------------------------------------------------------------------------!
! PELAGIC BACTERIA
!
! NAME [UNIT]/KIND DESCRIPTION
! p_version integer Switch for bacteria parameterization
! 1 : Baretta-Bekker et al. 1995;
! Vichi et al., 2007
! 2 : Vichi et al., 2004
! 3 : Polimene et al., 2006
! p_q10 [-] Q10-value (temperature dependency)
! p_chdo [mmol/m3] Half-saturation constant for O2 limitation
! p_sd [1/d] Specific mortality rate
! p_sd2 [1/d] Density dependent specific mortality rate
! p_suhR1 [1/d] Specific potential uptake for nutrient-rich DOM
! p_sulR1 [1/d] Specific potential uptake for nutrient-poor DOM
! p_suR2 [1/d] Specific potential uptake for semi-labile DOC
! p_suR3 [1/d] Specific potential uptake for semi-refractory DOC
! p_suR6 [1/d] Specific potential uptake for POM (1/d)
! p_sum [1/d] Potential specific growth rate
! p_pu_ra [-] Activity respiration fraction
! p_pu_ra_o [-] Additional respiration fraction at low O2 conc
! p_srs [1/d] Specific rest respiration
! p_qncPBA [mmolN/mgC] Optimal N/C ratio
! p_qpcPBA [mmolP/mgC] Optimal P/C ratio
! p_qlnc [mmolN/mgC] Minimal N/C ratio
! p_qlpc [mmolP/mgC] Minimal P/C ratio
! p_qun [mmolN/mgC/day] Membrane affinity for N
! p_qup [mmolP/mgC/day] Membrane affinity for N
! p_chn [mmolN/m3] Half saturation ammonium conc. for uptake
! p_chp [mmolP/m3] Half saturation phosphate conc. for uptake
! p_ruen [1/d] Relaxation timescale for N uptake/remin.
! p_ruep [1/d] Relaxation timescale for P uptake/remin.
! p_rec [1/d] Relaxation timescale for semi-labile excretion
! p_pu_ea_R3 [-] Excretion of semi-refractory DOC
!-------------------------------------------------------------------------!
&PelBacteria_parameters
! B1
p_version = 1
p_q10 = 2.95
p_chdo = 30.0
p_sd = 0.1
p_sd2 = 0.0
p_suhR1 = 0.3
p_sulR1 = 0.0
p_suR2 = 0.0
p_suR3 = 0.0
p_suR6 = 0.01
p_sum = 8.38
p_pu_ra = 0.6
p_pu_ra_o = 0.2
p_srs = 0.01
p_qncPBA = 0.0167
p_qpcPBA = 0.00185
p_qlnc = 0.0167
p_qlpc = 0.00185
p_qun = 0.0
p_qup = 0.0
p_chn = 5.00
p_chp = 1.00
p_rec = 1.0
p_ruen = 1.0
p_ruep = 1.0
p_pu_ea_R3 = 0.0
/
! Phyto_parameters, Phyto_parameters_iron !-------------------------------------------------------------------------!
! PELAGIC PHYTOPLANKTON
! NAME [UNIT]/KIND DESCRIPTION
! : --------- Physiological parameters -----------------
! p_q10 [-] Characteristic Q10 coefficient
! p_qtemp [-] Cut-off threshold for temperature factor
! p_sum [1/d] Maximal productivity at 10 degrees C
! p_srs [1/d] Respiration rate at 10 degrees C
! p_sdmo [1/d] Max.specific nutrient-stress lysis rate
! p_thdo [-] Half saturation constant for nutrient stress lysis
! p_seo [1/d] Extra lysis rate (biomass density-dependent)
! p_sheo [mgC/3] Half saturation constant for extra lysis
! p_pu_ea [-] Excreted fraction of primary production
! p_pu_ra [-] Activity respiration fraction
! p_switchDOC [1-3] Switch for the type of DOC excretion
! This choice must be consistent with bacteria
! 1. All DOC is released as R1c (Vichi et al., 2007)
! 2. Activity DOC is released as R2c (Vichi et al., 2004)
! (there is no nutrient-stress excretion)
! 3. All DOC is released as R2c (Polimene et al., 2006)
!
! --------- Nutrient parameters in phytoplankton -----------------
! p_netgrowth [T or F] Logical switch for nutrient-limited growth
! .T. nutrient-balanced growth (Vichi et al.2004)
! .F. nutrient-stress carbon excretion
! (Baretta-Bekker et al.1995 and Vichi et al.2007)
! p_limnut [1-3] Switch for N-P co-limitation
! 0. Geometric mean
! 1. Threshold (Liebig-like)
! 2. Combined
! ---- N limitation control ----
! p_qun [m3/mgC/d] Membrane affinity for N
! p_lN4 [mmolN/m3] Half saturation constant for NH4 uptake preference over NO3
! p_qnlc [mmolN/mgC] Minimum quotum Si:C
! p_qncPPY [mmolN/mgC] Reference quotum Si:C
! p_xqn [-] Multiplication factor for luxury storage
! ---- P limitation control ----
! p_qup [m3/mgC/d] Membrane affinity for P
! p_qplc [mmolP/mgC] Minimum quotum Si:C
! p_qpcPPY [mmolP/mgC] Reference quotum Si:C
! p_xqp [-] Multiplication factor for luxury storage
! ---- Si limitation control ----
! p_switchSi [1-2] Switch for Silica limitation
! 1. Si limitation is controlled by external Si conc.
! 2. Si limitation is controlled by internal quota
! p_chPs [mmolSi/m3] Half saturation conc. for dissolved Si limitation
! p_Contois [>=0] If >0, use Contois formulation
! p_qus [m3/mgC/d] Membrane affinity for Si
! p_qslc [mmolSi/mgC] Minimum quotum Si:C
! p_qscPPY [mmolSi/mgC] Reference quotum Si:C
! Brzezinski (1985) 0.13 mol/mol
! ---- nutrient stressed sinking ----
! p_esNI [-] Nutrient stress threshold for sinking
! p_res [m/d] Maximum Sinking vel city (m/d)
! --------- Chlorophyll parameters -----------
! p_switchChl [1-4] Switch for Chla-a synthesis
! p_sdchl [1/d] Specific turnover rate for Chla
! p_alpha_chl [mgC s m2/ Initial slope of the P-E curve
! mgChl/uE]
! p_qlcPPY [mgChla/mgC] Reference quotum Chla:C
! p_epsChla [m2/mgChla] Chla-specific extinction coefficient
! p_tochl_relt [1/d] Relaxation rate towards maximum Chla:C
! p_EpEk_or [-] Optimal value of E_PAR/E_K
! --------- Iron parameters -----------
! p_quf [m3/mgC/d] Membrane affinity for Fe
! p_qflc [umolFe/mgC] Minimum quotum Fe:C derived from 3 umol Fe/mol C
! Sunda & Huntsman (1997), Nature, 390, p 389-392
! p_qfcPPY [umolFe/mgC] Reference quotum Fe:C
! p_xqf [-] Multiplication factor for luxury storage
! --------- Light parameters ERSEM-II -----------
! p_iswLtyp [0-6] Shape of the productivity function
! p_chELiPPY [W/m2] Maximum Iopt
! p_clELiPPY [W/m2] Minimum Iopt
! p_ruELiPPY [1/d] Maximum daily shift in Iopt (1/d)
! p_addepth [m] Adaptation depth. Meaningless with high-res models
! --------- Sinking parameters -----------
! p_rPIm [m/d] Phytoplankton background sinking rate
!-------------------------------------------------------------------------!
&Phyto_parameters
! P1 P2 P3 P4
p_q10 = 2.0 2.0 2.0 2.0
p_temp = 0.0 0.0 0.75 0.0
p_sum = 2.0 2.5 3.0 0.75
p_srs = 0.01 0.05 0.1 0.1
p_sdmo = 0.05 0.05 0.05 0.0
p_thdo = 0.1 0.1 0.1 0.1
p_seo = 0.0 0.0 0.0 0.0
p_sheo = 0.0 0.0 0.0 100.0
p_pu_ea = 0.05 0.2 0.2 0.05
p_pu_ra = 0.1 0.2 0.25 0.1
p_switchDOC = 1 1 1 1
p_netgrowth = .TRUE. .TRUE. .TRUE. .TRUE.
p_limnut = 1 1 1 1
p_qun = 0.025 0.025 0.25 0.025
p_lN4 = 1.0 1.0 0.0 1.0
p_qnlc = 4.193e-3 4.193e-3 4.193e-3 0.00687
p_qncPPY = 1.26e-2 1.26e-2 1.26e-2 1.26e-2
p_xqn = 2.0 2.0 2.0 2.0
p_qup = 0.025 0.025 0.25 0.025
p_qplc = 1.80e-4 1.80e-4 1.80e-4 4.29e-4
p_qpcPPY = 7.86e-4 7.86e-4 7.86e-4 7.86e-4
p_xqp = 2.0 2.0 2.0 2.0
p_switchSi = 1 0 0 0
p_chPs = 1.0 0.0 0.0 0.0
p_Contois = 0.0 0.0 0.0 0.0
p_qus = 0.0 0.0 0.0 0.0
p_qslc = 0.0 0.0 0.0 0.0
p_qscPPY = 0.01 0.0 0.0 0.0
p_esNI = 0.1 0.00 0.00 0.00
p_res = 5.0 0.0 0.0 0.0
p_switchChl = 1 1 1 1
p_sdchl = 0.2 0.2 0.2 0.2
p_alpha_chl = 1.38e-5 0.46e-5 1.52e-5 0.68e-5
p_qlcPPY = 0.025 0.015 0.02 0.02
p_epsChla = 0.03 0.03 0.03 0.03
p_EpEk_or = 0.0 0.0 0.0 0.0
p_tochl_relt = 0.0 0.0 0.0 0.0
p_iswLtyp = 5 5 5 5
p_addepth = 50.0 50.0 50.0 50.0
p_chELiPPY = 100.0 100.0 100.0 100.0
p_clELiPPY = 8.0 10.0 6.0 12.0
p_ruELiPPY = 0.2 0.25 0.3 0.15
p_rPIm = 0.0 0.0 0.0 0.0
/
&Phyto_parameters_iron
/
! MicroZoo_parameters !-------------------------------------------------------------------------!
! MICRO-ZOOPLANKTON
!
! NAME [UNIT]/KIND DESCRIPTION
! p_q10 [-] Q10 value for physiological rates
! p_srs [1/d] Respiration rate at 10 degrees Celsius
! p_sum [1/d] Potential growth rate
! p_sdo [1/d] Mortality rate due to oxygen limitation
! p_sd [1/d] Temperature independent mortality rate
! p_pu [-] Assimilation efficiency
! p_pu_ea [-] Fraction of activity excretion
! p_chro [mmolO2/m3] Half-saturation oxygen concentration
! p_chuc [mgC/m3] Half-saturation Food concentration for Type II
! p_minfood [mgC/m3] Half-saturation food concentration for
! preference factor
! p_qncMIZ [mmolN/mgC] Maximum quotum P:C
! p_qpcMIZ [mmolN/mgC] Maximum quotum N:C
! p_paPBA(z,b) [-] Availability of pelagic Bacteria group b
! to Zooplankton group z
! p_paPPY(z,p) [-] Availability of PhytoPlankton group p
! to Zooplankton group z
! p_paMIZ(z,m) [-] Availability of MicroZooplankton group m
! to Zooplankton group z
!-------------------------------------------------------------------------!
&MicroZoo_parameters
! Z5 Z6
p_q10 = 2.0 2.0
p_srs = 0.02 0.02
p_sum = 2.0 4.0
p_sdo = 0.25 0.25
p_sd = 0.05 0.05
p_pu = 0.6 0.5
p_pu_ea = 0.4 0.3
p_chro = 0.5 0.5
p_chuc = 20.0 20.0
p_minfood = 20.0 20.0
p_qpcMIZ = 1.85d-3 1.85d-3
p_qncMIZ = 1.67d-2 1.67d-2
p_paPBA = 0.1 0.9
! P1 P2 P3 P4
! Z5
p_paPPY(1,:) = 0.2 1.0 0.1 0.0
! Z6
p_paPPY(2,:) = 0.0 0.1 1.0 0.0
! Z5 Z6
! Z5
p_paMIZ(1,:) = 1.0 0.8
! Z6
p_paMIZ(2,:) = 0.0 0.2
/
! MesoZoo_parameters !-------------------------------------------------------------------------!
! MESO-ZOOPLANKTON
! NAME [UNIT]/KIND DESCRIPTION
! p_q10 [-] Q10 value for physiological rates
! p_srs [1/d] Respiration rate at 10 degrees C
! p_sum [1/d] Maximal productivity at 10 degrees C
! p_sd [1/d] Background natural mortality
! p_vum [m3/mgC/d] Specific search volume
! p_puI [-] Assimilation efficiency
! p_peI [-] Fraction of Faeces production
! p_sdo [m3/mgC/d] Specific density-dependent mortality
! p_sds [-] Exponent of density-dependent mortality
! p_qpcMEZ [mmolP/mgC] Maximum quotum P:C
! p_qncMEZ [mmolN/mgC] Maximum quotum N:C
! p_clO2o [mmolO2/m3] Half-saturation oxygen concentration
! p_paPPY(z,p) [-] Availability of PhytoPlankton group p
! to Zooplankton group z
! p_paMIZ(z,m) [-] Availability of MicroZooplankton group m
! to Zooplankton group z
! p_paMEZ(z,m) [-] Availability of MesoZooplankton group m
! to Zooplankton group z
!-------------------------------------------------------------------------!
&MesoZoo_parameters
! Z3 Z4
p_q10 = 2.0 2.0
p_srs = 0.01 0.02
p_sum = 2.0 2.0
p_vum = 0.025 0.025
p_puI = 0.6 0.6
p_peI = 0.3 0.35
p_sdo = 0.01 0.01
p_sd = 0.02 0.02
p_sds = 2.0 2.0
p_qpcMEZ = 1.67d-3 1.67d-3
p_qncMEZ = 0.015 0.015
p_clO2o = 30.0 30.0
! P1 P2 P3 P4
! Z3
p_paPPY(1,:) = 0.0 0.0 0.0 0.0
! Z4
p_paPPY(2,:) = 1.0 0.0 0.0 0.7
! Z5 Z6
! Z3
p_paMIZ(1,:) = 0.0 0.0
! Z4
p_paMIZ(2,:) = 1.0 0.0
! Z3 Z4
! Z3
p_paMEZ(1,:) = 1.0 1.0
! Z4
p_paMEZ(2,:) = 0.0 1.0
/