diff --git a/.autorc b/.autorc new file mode 100644 index 0000000..ebb6a3b --- /dev/null +++ b/.autorc @@ -0,0 +1,206 @@ +{ + "plugins": [ + "git-tag", + "conventional-commits", + "first-time-contributor", + ["released", {"label": "Released", "prereleaseLabel": "Prereleased"}], + ["pr-body-labels", { "disabledLabels": ["release", "Release", "Released", "Prereleased", "Skip release"] }] + ], + "owner": "physiopy", + "repo": "", + "name": "Stefano Moia", + "email": "s.moia.research@gmail.com", + "labels": [ + { + "name": "Majormod", + "changelogTitle": "💥 Breaking Change", + "description": "This PR breaks compatibility, and increments the major version (+1.0.0)", + "releaseType": "major", + "overwrite": true, + "color": "#05246d" + }, + { + "name": "Minormod", + "changelogTitle": "🚀 Enhancement", + "description": "This PR generally closes an `Enhancement` issue. It increments the minor version (0.+1.0)", + "releaseType": "minor", + "overwrite": true, + "color": "#05246d" + }, + { + "name": "Minormod-breaking", + "changelogTitle": "💥 Breaking Change during development", + "description": "For development only, this PR increments the minor version (0.+1.0) but breaks compatibility", + "releaseType": "minor", + "overwrite": true, + "color": "#05246d" + }, + { + "name": "BugFIX", + "changelogTitle": "🐛 Bug Fix", + "description": "This PR generally closes a `Bug` issue, and increments the patch version (0.0.+1)", + "releaseType": "patch", + "overwrite": true, + "color": "#d73a4a" + }, + { + "name": "Refactoring", + "changelogTitle": "💻 Refactored", + "description": "Improve nonfunctional attributes and bump up a minor version (0.+1.0)", + "releaseType": "minor", + "overwrite": true, + "color": "#9494ff" + }, + { + "name": "Documentation", + "changelogTitle": "📝 Documentation", + "description": "This issue or PR is about the documentation ", + "releaseType": "none", + "overwrite": true, + "color": "#1d70cf" + }, + { + "name": "Testing", + "changelogTitle": "⚠️ Tests", + "description": "This is for testing features, writing tests or producing testing code", + "releaseType": "none", + "overwrite": true, + "color": "#ffb5b4" + }, + { + "name": "Internal", + "changelogTitle": "🏠 Internal", + "description": "Changes affect the internal API. It doesn't increase the version, but produces a changelog", + "releaseType": "none", + "overwrite": true, + "color": "#ffffff" + }, + { + "name": "Outreach", + "changelogTitle": "🖋️ Outreach", + "description": "Issue about outreaching of any form", + "releaseType": "none", + "overwrite": true, + "color": "#0e8a16" + }, + { + "name": "Skip release", + "description": "This PR preserves the current version when merged, and doesn't appear in the changelog", + "releaseType": "skip", + "overwrite": true, + "color": "#ffffff" + }, + { + "name": "Release", + "description": "For PR only, trigger a release at the merge", + "releaseType": "release", + "overwrite": true, + "color": "#ffffff" + }, + { + "name": "Discussion", + "description": "Discussion of a concept or implementation, needs to stay open", + "releaseType": "none", + "overwrite": true, + "color": "#1c778c" + }, + { + "name": "Duplicate", + "description": "This issue or pull request already exists", + "releaseType": "none", + "overwrite": true, + "color": "#cfd3d7" + }, + { + "name": "Enhancement", + "description": "New feature or request", + "releaseType": "none", + "overwrite": true, + "color": "#a2eeef" + }, + { + "name": "Good First Issue", + "description": "A good first issue to tackle to get comfortable with the project", + "releaseType": "none", + "overwrite": true, + "color": "#4e2a84" + }, + { + "name": "Hacktoberfest", + "description": "Issue/PR for hacktoberfest. Completing this issue/PR might not grant the all-contributor recognition", + "releaseType": "none", + "overwrite": true, + "color": "#ff7518" + }, + { + "name": "hacktoberfest-accepted", + "description": "To accept a PR for the aims of the hacktoberfest", + "releaseType": "none", + "overwrite": true, + "color": "#ff7518" + }, + { + "name": "BrainHack", + "description": "This issue is suggested for BrainHack participants!", + "releaseType": "none", + "overwrite": true, + "color": "#000000" + }, + { + "name": "Help wanted", + "description": "A pair of extra eyes are needed here!", + "releaseType": "none", + "overwrite": true, + "color": "#57db1a" + }, + { + "name": "Invalid", + "description": "This just doesn't seem right", + "releaseType": "skip", + "overwrite": true, + "color": "#960018" + }, + { + "name": "Paused", + "description": "Issue should not be worked on until the resolution of other issues or Pull Requests", + "releaseType": "none", + "overwrite": true, + "color": "#f7c38c" + }, + { + "name": "Question", + "description": "Request information about the project. For users only", + "releaseType": "none", + "overwrite": true, + "color": "#d876e3" + }, + { + "name": "Urgent", + "description": "If you don't know where to start, start here!", + "releaseType": "none", + "overwrite": true, + "color": "#fff200" + }, + { + "name": "Wontfix", + "description": "This will not be worked on", + "releaseType": "none", + "overwrite": true, + "color": "#ffffff" + }, + { + "name": "Released", + "description": "This PR has been released!", + "releaseType": "none", + "overwrite": true, + "color": "#ffffff" + }, + { + "name": "Prereleased", + "description": "This PR has been released in a prerelease", + "releaseType": "none", + "overwrite": true, + "color": "#ffffff" + } + ] +} diff --git a/.circleci/config.yml b/.circleci/config.yml new file mode 100644 index 0000000..cd9245f --- /dev/null +++ b/.circleci/config.yml @@ -0,0 +1,145 @@ +# Use the latest 2.1 version of CircleCI pipeline process engine. +# See: https://circleci.com/docs/2.0/configuration-reference +version: 2.1 + +# Orbs are reusable packages of CircleCI configuration that you may share across projects, enabling you to create encapsulated, parameterized commands, jobs, and executors that can be used across multiple projects. +# See: https://circleci.com/docs/2.0/orb-intro/ +orbs: + # The python orb contains a set of prepackaged CircleCI configuration you can use repeatedly in your configuration files + # Orb commands and jobs help you with common scripting around a language/tool + # so you dont have to copy and paste it everywhere. + # See the orb documentation here: https://circleci.com/developer/orbs/orb/circleci/python + python: circleci/python@2.0.3 + codecov: codecov/codecov@3.2.2 + +# Define a job to be invoked later in a workflow. +# See: https://circleci.com/docs/2.0/configuration-reference/#jobs +jobs: + test37: # This is the name of the job, feel free to change it to better match what you're trying to do! + # These next lines defines a Docker executors: https://circleci.com/docs/2.0/executor-types/ + # You can specify an image from Dockerhub or use one of the convenience images from CircleCI's Developer Hub + # A list of available CircleCI Docker convenience images are available here: https://circleci.com/developer/images/image/cimg/python + # The executor is the environment in which the steps below will be executed - below will use a python 3.6.14 container + # Change the version below to your required version of python + docker: + - image: cimg/python:3.7 + working_directory: /tmp/src/ + resource_class: medium + # Checkout the code as the first step. This is a dedicated CircleCI step. + # The python orb's install-packages step will install the dependencies from a Pipfile via Pipenv by default. + # Here we're making sure we use just use the system-wide pip. By default it uses the project root's requirements.txt. + # Then run your tests! + # CircleCI will report the results back to your VCS provider. + steps: + - checkout + # Install Pillow first to avoid jpsg and zlib issues + - python/install-packages: + path-args: .[test] + pypi-cache: false + venv-cache: false + pkg-manager: pip-dist + # app-dir: ~/project/package-directory/ # If you're requirements.txt isn't in the root directory. + # pip-dependency-file: test-requirements.txt # if you have a different name for your requirements file, maybe one that combines your runtime and test requirements. + - run: + name: Run tests + # This assumes pytest is installed via the install-package step above + command: | + pytest --cov=./ + mkdir /tmp/src/coverage + mv ./.coverage /tmp/src/coverage/.coverage.py37 + - store_artifacts: + path: /tmp/src/coverage + # Persist the specified paths (workspace/echo-output) into the workspace for use in downstream job. + - persist_to_workspace: + # Must be an absolute path, or relative path from working_directory. This is a directory on the container which is + # taken to be the root directory of the workspace. + root: /tmp + # Must be relative path from root + paths: + - src/coverage/.coverage.py37 + + test310: + docker: + - image: cimg/python:3.10 + working_directory: /tmp/src/ + resource_class: medium + steps: + - checkout + - python/install-packages: + path-args: .[test] + pypi-cache: false + venv-cache: false + pkg-manager: pip-dist + - run: + name: Run tests + command: | + pytest --cov=./ + mkdir /tmp/src/coverage + mv ./.coverage /tmp/src/coverage/.coverage.py310 + - store_artifacts: + path: /tmp/src/coverage + - persist_to_workspace: + root: /tmp + paths: + - src/coverage/.coverage.py310 + + style_check: + docker: + - image: cimg/python:3.7 + working_directory: /tmp/src/ + resource_class: small + steps: + - checkout + - python/install-packages: + path-args: .[style] + pypi-cache: false + venv-cache: false + pkg-manager: pip-dist + - run: + name: Check style + command: | + isort --check . + black --check + flake8 ./ + + merge_coverage: + working_directory: /tmp/src/ + docker: + - image: cimg/python:3.10 + resource_class: small + steps: + - attach_workspace: + at: /tmp + - checkout + - python/install-packages: + args: coverage + pkg-manager: pip + - run: + name: Merge coverage files + command: | + sudo apt update && sudo apt install curl + cd /tmp/src/coverage/ + coverage combine + coverage xml + - store_artifacts: + path: /tmp/src/coverage + - codecov/upload: + file: /tmp/src/coverage/coverage.xml + +# Invoke jobs via workflows +# See: https://circleci.com/docs/2.0/configuration-reference/#workflows +workflows: + build_test: # This is the name of the workflow, feel free to change it to better match your workflow. + # Inside the workflow, you define the jobs you want to run. + jobs: + - style_check + - test37: + requires: + - style_check + - test310: + requires: + - style_check + - merge_coverage: + requires: + - test37 + - test310 diff --git a/.coveragerc b/.coveragerc new file mode 100644 index 0000000..774c4f6 --- /dev/null +++ b/.coveragerc @@ -0,0 +1,19 @@ +[run] +omit = + docs/* + tests/* + _version.py + __init__.py + **/__init__.py + due.py + .*rc + versioneer.py + setup.py + */tests/* + */_version.py + */__init__.py + */**/__init__.py + */due.py + */.*rc + */versioneer.py + */setup.py diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000..98ad13a --- /dev/null +++ b/.gitattributes @@ -0,0 +1,4 @@ +/_version.py export-subst + +*.py eol=lf +*.rst eol=lf diff --git a/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_BUGS.md b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_BUGS.md new file mode 100644 index 0000000..052c129 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_BUGS.md @@ -0,0 +1,34 @@ +--- +name: Bug issue +about: Use this template to report bugs. +title: '' +labels: Bug +assignees: +--- + + + +## Expected Behavior + + + +## Actual Behavior + + + + +## Steps to Reproduce the Problem + + + 1. + 2. + 3. + +## Specifications + + - Python version: + - phys2bids version: + - Platform: + +## Possible solution + diff --git a/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_FEATURE_REQUEST.md b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_FEATURE_REQUEST.md new file mode 100644 index 0000000..098ac0d --- /dev/null +++ b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_FEATURE_REQUEST.md @@ -0,0 +1,20 @@ +--- +name: Feature request +about: Use this template to request new features. +title: '' +labels: Enhacement +assignees: '' +--- + + + +## Detailed Description + + +## Context / Motivation + + + +## Possible Implementation + + diff --git a/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_GENERAL.md b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_GENERAL.md new file mode 100644 index 0000000..957ba84 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/ISSUE_TEMPLATE_GENERAL.md @@ -0,0 +1,23 @@ +--- +name: General issue +about: Use this template for any issues not related to bugs or feature requests +title: '' +labels: +assignees: '' +--- + + + + +## Summary + + +## Additional detail + + +## Next Steps + + + * + * + * diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..ec3eb96 --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,40 @@ + + + +Closes # + + + + +## Proposed Changes + + - + - + - + +## Change Type + +- [ ] `bugfix` (+0.0.1) +- [ ] `minor` (+0.1.0) +- [ ] `major` (+1.0.0) +- [ ] `refactoring` (no version update) +- [ ] `test` (no version update) +- [ ] `infrastructure` (no version update) +- [ ] `documentation` (no version update) +- [ ] `other` + +## Checklist before review + + +- [ ] I added everything I wanted to add to this PR. +- [ ] \[Code or tests only\] I wrote/updated the necessary docstrings. +- [ ] \[Code or tests only\] I ran and passed tests locally. +- [ ] \[Documentation only\] I built the docs locally. +- [ ] My contribution is harmonious with the rest of the code: I'm not introducing repetitions. +- [ ] My code respects the adopted style, especially linting conventions. +- [ ] The title of this PR is explanatory on its own, enough to be understood as part of a changelog. +- [ ] I added or indicated the right labels. + +- [ ] I added information regarding the timeline of completion for this PR. + +- [ ] Please, comment on my PR while it's a draft and give me feedback on the development! diff --git a/.github/workflows/auto-release.yml b/.github/workflows/auto-release.yml new file mode 100644 index 0000000..3cc8ba9 --- /dev/null +++ b/.github/workflows/auto-release.yml @@ -0,0 +1,43 @@ +# # This workflows will create a release using auto when a PR is merged in master. + +name: Format and auto-release on PR merge + +on: + # ATM, this is the closest trigger to a PR merging + push: + branches: + - master + +jobs: + auto-release: + runs-on: ubuntu-20.04 + # Set skip ci to avoid loops + if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')" + # Set bash as default shell for jobs + defaults: + run: + shell: bash + steps: + - name: Checkout source + uses: actions/checkout@v2 + with: + # Fetch all history for all branches and tags + fetch-depth: 0 + # Use token with write access to the repo + token: ${{ secrets.GH_TOKEN }} + - name: Download and install latest auto + env: + # OS can be linux, macos, or win + OS: linux + # Retrieve URL of latest auto, download it, unzip it, and give exec permissions. + run: | + curl -vkL -o - $( curl -s https://api.github.com/repos/intuit/auto/releases/latest \ + | grep browser_download_url | grep ${OS} | awk -F'"' '{print $4}') \ + | gunzip > ~/auto + chmod a+x ~/auto + - name: Create release without version prefix + env: + GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} + # Run auto release, don't use 'v' prefix, and be verbose + run: | + ~/auto shipit --no-version-prefix -v diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml new file mode 100644 index 0000000..6c88158 --- /dev/null +++ b/.github/workflows/python-publish.yml @@ -0,0 +1,32 @@ +# # This workflows will upload a Python Package using Twine when a release is created +# # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries + +name: Upload Python Package + +on: + release: + types: [created] + +jobs: + deploy: + + runs-on: ubuntu-18.04 + + steps: + - name: Checkout source + uses: actions/checkout@v2 + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: '3.6' + - name: Install dependencies + run: | + python -m pip install --upgrade pip + pip install setuptools wheel twine + - name: Build and publish + env: + TWINE_USERNAME: __token__ + TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} + run: | + python setup.py sdist bdist_wheel + twine upload dist/* diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..6a5b616 --- /dev/null +++ b/.gitignore @@ -0,0 +1,135 @@ +# Containers +*.sif + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.idea/ +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ +docs/api/ +docs/api/generated + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +.python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..646f4cd --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,34 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks +repos: +- repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.4.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + - id: check-case-conflict + - id: check-merge-conflict +- repo: https://github.com/psf/black + rev: 22.10.0 + hooks: + - id: black +- repo: https://github.com/pycqa/isort + rev: 5.10.1 + hooks: + - id: isort +- repo: https://github.com/pycqa/flake8 + rev: 6.0.0 + hooks: + - id: flake8 +- repo: https://github.com/pycqa/pydocstyle + rev: 6.1.1 + hooks: + - id: pydocstyle +- repo: https://github.com/pre-commit/pygrep-hooks + rev: v1.9.0 + hooks: + - id: rst-backticks + - id: rst-directive-colons + - id: rst-inline-touching-normal diff --git a/.readthedocs.yml b/.readthedocs.yml new file mode 100644 index 0000000..bc99c2a --- /dev/null +++ b/.readthedocs.yml @@ -0,0 +1,23 @@ +# .readthedocs.yml +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +build: + os: "ubuntu-20.04" + tools: + python: "3.7" + +# Build documentation in the docs/ directory with Sphinx +sphinx: + configuration: docs/conf.py + +python: + install: + - method: pip + path: . + extra_requirements: + - doc + system_packages: true diff --git a/.zenodo.json b/.zenodo.json new file mode 100644 index 0000000..064eb2e --- /dev/null +++ b/.zenodo.json @@ -0,0 +1,13 @@ +{ + "license":"", + "title":"", + "upload_type":"software", + "creators":[ + { + "orcid":"xxxx-xxxx-xxxx-xxxx", + "affiliation":"<Affiliation>", + "name":"<Name>" + } + ], + "access_right":"open" +} diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..fdddb29 --- /dev/null +++ b/LICENSE @@ -0,0 +1,24 @@ +This is free and unencumbered software released into the public domain. + +Anyone is free to copy, modify, publish, use, compile, sell, or +distribute this software, either in source code form or as a compiled +binary, for any purpose, commercial or non-commercial, and by any +means. + +In jurisdictions that recognize copyright laws, the author or authors +of this software dedicate any and all copyright interest in the +software to the public domain. We make this dedication for the benefit +of the public at large and to the detriment of our heirs and +successors. We intend this dedication to be an overt act of +relinquishment in perpetuity of all present and future rights to this +software under copyright law. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. +IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR +OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, +ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR +OTHER DEALINGS IN THE SOFTWARE. + +For more information, please refer to <https://unlicense.org> diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 0000000..76a5ff4 --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,4 @@ +include README.* LICENSE setup* MANIFEST.in requirements.txt + +include versioneer.py +include <reponame>/_version.py diff --git a/README.md b/README.md new file mode 100644 index 0000000..d2faac0 --- /dev/null +++ b/README.md @@ -0,0 +1,123 @@ +<!--(https://raw.githubusercontent.com/physiopy/phys2bids/master/docs/_static/physiopy_logo_small.png)--> +<a name="readme"></a> +<img alt="repository" src="https://raw.githubusercontent.com/physiopy/phys2bids/master/docs/_static/physiopy_logo_small.png" height="150"> + +This is a template for physiopy's repositories (and other repositories based on the same settings). + +Remember to change the licence as soon as you adopt the template. + +Available Configurations +------------------------ +This repository is meant to be a template for python3 projects. +- CircleCI medium docker running Linux (python 3.7, 3.10, style checks, and coverage) +- Auto release based on Github versioning with Physiopy's labels. +- `.gitattributes` for python +- `.gitignore` for python and containers +- Pre-commit (black, isort, flake8, pydocstyle, and RST documentation) +- Read the Docs (based on sphinx) +- Zenodo +- Codecov (for master branch, 90%+) +- Python setup with `extra_require` options +- Versioneer +- Issue templates (bugs, feature requests, generic) +- PR template +- Workflows (Auto release and PyPI upload) + +Usage +----- +1. Find and replace the items between `<>`, for instance `<reponame>` +2. Change licence +3. Set up your default pushes to `origin` (`git config remote.pushDefault origin`) +4. Finish setting up everything. + +More explanation coming soon. + +<reponame> +========== + +[![Latest version](https://img.shields.io/github/v/release/physiopy/<reponame>?style=flat&logo=github&sort=semver)](https://github.com/physiopy/<reponame>/releases) +[![Release date](https://img.shields.io/github/release-date/physiopy/<reponame>?style=flat&logo=github)](https://github.com/physiopy/<reponame>/releases) +[![Auto Release](https://img.shields.io/badge/release-auto.svg?style=flat&colorA=888888&colorB=9B065A&label=auto&logo=data:image/png;base64,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)](https://github.com/intuit/auto) + +[![See the documentation at: https://<reponame>.readthedocs.io](https://img.shields.io/badge/docs-read%20latest-informational?style=flat&logo=readthedocs)](https://<reponame>.readthedocs.io/en/latest/?badge=latest) +<!-- [![Latest DOI](https://zenodo.org/badge/<doi>.svg)](https://zenodo.org/badge/latestdoi/<doi>) --> +<!-- [![Licensed Apache 2.0](https://img.shields.io/github/license/physiopy/<reponame>?style=flat&logo=apache)](https://github.com/physiopy/<reponame>/blob/master/LICENSE) --> + +[![Codecov](https://img.shields.io/codecov/c/gh/physiopy/<reponame>?style=flat&label=codecov&logo=codecov)](https://codecov.io/gh/physiopy/<reponame>) +[![Build Status](https://img.shields.io/circleci/build/github/physiopy/<reponame>?style=flat&label=circleci&logo=circleci)](https://circleci.com/gh/physiopy/<reponame>) +[![Documentation Status](https://img.shields.io/readthedocs/<reponame>?style=flat&label=readthedocs&logo=readthedocs)](https://<reponame>.readthedocs.io/en/latest/?badge=latest) + +[![Latest version](https://img.shields.io/pypi/v/<reponame>?style=flat&logo=pypi&logoColor=white)](https://pypi.org/project/<reponame>/) +[![Supports python version](https://img.shields.io/pypi/pyversions/<reponame>?style=flat&logo=python&logoColor=white)](https://pypi.org/project/<reponame>/) + +[![Auto Release](https://img.shields.io/badge/release-auto.svg?colorA=888888&colorB=9B065A&label=auto)](https://github.com/intuit/auto) +[![Supports python version](https://img.shields.io/pypi/pyversions/<reponame>)](https://pypi.org/project/<reponame>/) + +<!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section --> +[![All Contributors](https://img.shields.io/badge/all_contributors-0-orange.svg?style=flat)](#contributors) +<!-- ALL-CONTRIBUTORS-BADGE:END --> + +``<reponame>`` is a python3 library meant to do something. + +> If you use ``<reponame>`` in your work, please support it by citing the zenodo DOI of the version you used. You can find the latest version [here](https://doi.org/10.5281/zenodo.3470091) + +> We also support gathering all relevant citations via [DueCredit](http://duecredit.org). + +[Read the latest documentation](https://<reponame>.readthedocs.io/en/latest/) for more information on <reponame>! + +## Tested OSs +We woudl love to do that, but for teh moment we cannot support **Windows or MacOS testing**. The reason is related to the cost of running such tests: for each non-Linux test, we can run up to 8 tests on Linux instead. Partial Windows and MacOS testing might be introduced in future releases. + +Hence, while **we cannot ensure that <reponame> will run on Windows or MacOS**, however we don't see any reason it shouldn't. +Besides, it will run on Windows Linux Subsistems. + +We apologise for the discomfort. + + +<!-- ## Hacktoberfest +Hacktoberfest participants, welcome! +We have some issues for you [here](https://github.com/physiopy/<reponame>/issues?q=is%3Aissue+is%3Aopen+label%3Ahacktoberfest)! +However, feel free to tackle any issue you'd like. Depending on the issue and extent of contribution, Hacktoberfest related PRs might not count toward being listed as contributors and authors (unless there is the specific interest). You can ask about it in the issue itself! +Feel free to ask help to the contributors over gitter, happy coding and (hopefully) enjoy hour tee (or tree)! + +## The BrainWeb +BrainWeb participants, welcome! +We have a milestone [here](https://github.com/physiopy/<reponame>/milestone/5) as a collection of issues you could work on with our help. +Check the issues with a `BrainWeb` label. Of course, they are only suggestions, so feel free to tackle any issue you want, even open new ones! +You can also contact us on Gitter, in the BrainHack Mattermost (<a href="https://mattermost.brainhack.org/brainhack/channels/physiopy">#physiopy</a>), and don't hesitate to contact [Stefano](https://github.com/smoia) in other ways to jump in the development! +--> + +**We're looking for code contributors,** but any suggestion/bug report is welcome! Feel free to open issues! + +This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome! + +## Contributors ✨ + +Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)): +<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section --> +<!-- prettier-ignore-start --> +<!-- markdownlint-disable --> + +<!-- markdownlint-restore --> +<!-- prettier-ignore-end --> + +<!-- ALL-CONTRIBUTORS-LIST:END --> + +License +------- + +This template is released under The Unlicense. Commented here below a copy of the Apache 2.0 Licence, adopted by Physiopy. +Remember to change the licence of your repository as soon as you adopt the template. +<!-- Copyright 2019-2020, The Physiopy community. + +Licensed under the Apache License, Version 2.0 (the "License"); +you may not use this file except in compliance with the License. +You may obtain a copy of the License at + +http://www.apache.org/licenses/LICENSE-2.0 + +Unless required by applicable law or agreed to in writing, software +distributed under the License is distributed on an "AS IS" BASIS, +WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +See the License for the specific language governing permissions and +limitations under the License. --> diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..4f18d83 --- /dev/null +++ b/codecov.yml @@ -0,0 +1,43 @@ +codecov: + branch: master + strict_yaml_branch: master + require_ci_to_pass: yes + bot: "codecov-io" + max_report_age: 48 + disable_default_path_fixes: no + +coverage: + precision: 2 + round: down + range: "60...90" + +parsers: + gcov: + branch_detection: + conditional: yes + loop: yes + method: no + macro: no + +ignore: + - "docs" + - "tests" + - "_version.py" + - "__init__.py" + - "**/__init__.py" + - "due.py" + - ".*rc" + - "versioneer.py" + - "setup.py" + - "*/tests" + - "*/_version.py" + - "*/__init__.py" + - "*/**/__init__.py" + - "*/due.py" + - "*/.*rc" + - "*/versioneer.py" + - "*/setup.py" +comment: + layout: "reach,diff,flags,tree" + behavior: default + require_changes: no diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..13d832c --- /dev/null +++ b/requirements.txt @@ -0,0 +1 @@ +numpy>=1.9.3 diff --git a/setup.cfg b/setup.cfg new file mode 100644 index 0000000..01a1f92 --- /dev/null +++ b/setup.cfg @@ -0,0 +1,130 @@ +[metadata] +name = <reponame> +url = https://github.com/physiopy/<reponame> +download_url = https://github.com/physiopy/<reponame> +author = Physiopy community +maintainer = Stefano Moia +maintainer_email = s.moia.research@gmail.com +classifiers = + Development Status :: 1 - Planning + Intended Audience :: Science/Research + License :: OSI Approved :: <license> + Programming Language :: Python :: 3.7 + Programming Language :: Python :: 3.8 + Programming Language :: Python :: 3.9 + Programming Language :: Python :: 3.10 +license = <license> +description = <Description>. +long_description = file:README.md +long_description_content_type = text/markdown; charset=UTF-8 +platforms = OS Independent +provides = + <reponame> + +[options] +python_requires = >=3.6 +install_requires = + numpy> + duecredit +tests_require = + pytest >=5.3 +test_suite = pytest +zip_safe = False +packages = find: +include_package_data = True + +[options.extras_require] +extra_1 = + numpy +extra_2 = + numpy +all = + %(extra_1)s + %(extra_2)s +doc = + sphinx>=2.0 + sphinx-argparse + sphinx_rtd_theme + myst-parser +style = + flake8>=4.0 + black<23.0.0 + isort<6.0.0 + pydocstyle +test = + %(all)s + %(style)s + pytest >=5.3 + pytest-cov + coverage +devtools = + pre-commit +dev = + %(devtools)s + %(doc)s + %(test)s + +[options.entry_points] +console_scripts = + <reponame>=<reponame>.workflow:_main + +[flake8] +doctest = True +exclude = + _version.py + ./<reponame>/cli/__init__.py + ./<reponame>/tests/* + versioneer.py +ignore = E126, E402, W503, F401, F811 +max-line-length = 88 +extend-ignore = E203, E501 +extend-select = B950 +per-file-ignores = + workflow.py:D401 + +[isort] +profile = black +skip_gitignore = true +extend_skip = + .autorc + .coverage* + .readthedocs.yml + .zenodo.json + codecov.yml + setup.py + versioneer.py + <reponame>/_version.py +skip_glob = + docs/* + +[pydocstyle] +convention = numpy +match = + <reponame>/*.py +match_dir = <reponame>/[^tests]* + + +[tool:pytest] +doctest_optionflags = NORMALIZE_WHITESPACE +xfail_strict = true +addopts = -rx + +[coverage:run] +branch = True +omit = + <reponame>/tests/* + docs/* + setup.py + versioneer.py + doi.py + __init__.py + */__init__.py + */*/__init__.py + +[versioneer] +VCS = git +style = pep440 +versionfile_source = <reponame>/_version.py +versionfile_build = <reponame>/_version.py +tag_prefix = +parentdir_prefix = diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..895a68b --- /dev/null +++ b/setup.py @@ -0,0 +1,16 @@ +#!/usr/bin/env python +import sys + +from setuptools import setup +import versioneer + +SETUP_REQUIRES = ["setuptools >= 30.3.0"] +SETUP_REQUIRES += ["wheel"] if "bdist_wheel" in sys.argv else [] + +if __name__ == "__main__": + setup( + name="nigsp", + setup_requires=SETUP_REQUIRES, + version=versioneer.get_version(), + cmdclass=versioneer.get_cmdclass(), + ) diff --git a/versioneer.py b/versioneer.py new file mode 100644 index 0000000..2b54540 --- /dev/null +++ b/versioneer.py @@ -0,0 +1,1885 @@ +# Version: 0.18 + +"""The Versioneer - like a rocketeer, but for versions. + +The Versioneer +============== + +* like a rocketeer, but for versions! +* https://github.com/warner/python-versioneer +* Brian Warner +* License: Public Domain +* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, 3.5, 3.6, and pypy +* [![Latest Version] +(https://pypip.in/version/versioneer/badge.svg?style=flat) +](https://pypi.python.org/pypi/versioneer/) +* [![Build Status] +(https://travis-ci.org/warner/python-versioneer.png?branch=master) +](https://travis-ci.org/warner/python-versioneer) + +This is a tool for managing a recorded version number in distutils-based +python projects. The goal is to remove the tedious and error-prone "update +the embedded version string" step from your release process. Making a new +release should be as easy as recording a new tag in your version-control +system, and maybe making new tarballs. + + +## Quick Install + +* `pip install versioneer` to somewhere to your $PATH +* add a `[versioneer]` section to your setup.cfg (see below) +* run `versioneer install` in your source tree, commit the results + +## Version Identifiers + +Source trees come from a variety of places: + +* a version-control system checkout (mostly used by developers) +* a nightly tarball, produced by build automation +* a snapshot tarball, produced by a web-based VCS browser, like github's + "tarball from tag" feature +* a release tarball, produced by "setup.py sdist", distributed through PyPI + +Within each source tree, the version identifier (either a string or a number, +this tool is format-agnostic) can come from a variety of places: + +* ask the VCS tool itself, e.g. "git describe" (for checkouts), which knows + about recent "tags" and an absolute revision-id +* the name of the directory into which the tarball was unpacked +* an expanded VCS keyword ($Id$, etc) +* a `_version.py` created by some earlier build step + +For released software, the version identifier is closely related to a VCS +tag. Some projects use tag names that include more than just the version +string (e.g. "myproject-1.2" instead of just "1.2"), in which case the tool +needs to strip the tag prefix to extract the version identifier. For +unreleased software (between tags), the version identifier should provide +enough information to help developers recreate the same tree, while also +giving them an idea of roughly how old the tree is (after version 1.2, before +version 1.3). Many VCS systems can report a description that captures this, +for example `git describe --tags --dirty --always` reports things like +"0.7-1-g574ab98-dirty" to indicate that the checkout is one revision past the +0.7 tag, has a unique revision id of "574ab98", and is "dirty" (it has +uncommitted changes. + +The version identifier is used for multiple purposes: + +* to allow the module to self-identify its version: `myproject.__version__` +* to choose a name and prefix for a 'setup.py sdist' tarball + +## Theory of Operation + +Versioneer works by adding a special `_version.py` file into your source +tree, where your `__init__.py` can import it. This `_version.py` knows how to +dynamically ask the VCS tool for version information at import time. + +`_version.py` also contains `$Revision$` markers, and the installation +process marks `_version.py` to have this marker rewritten with a tag name +during the `git archive` command. As a result, generated tarballs will +contain enough information to get the proper version. + +To allow `setup.py` to compute a version too, a `versioneer.py` is added to +the top level of your source tree, next to `setup.py` and the `setup.cfg` +that configures it. This overrides several distutils/setuptools commands to +compute the version when invoked, and changes `setup.py build` and `setup.py +sdist` to replace `_version.py` with a small static file that contains just +the generated version data. + +## Installation + +See [INSTALL.md](./INSTALL.md) for detailed installation instructions. + +## Version-String Flavors + +Code which uses Versioneer can learn about its version string at runtime by +importing `_version` from your main `__init__.py` file and running the +`get_versions()` function. From the "outside" (e.g. in `setup.py`), you can +import the top-level `versioneer.py` and run `get_versions()`. + +Both functions return a dictionary with different flavors of version +information: + +* `['version']`: A condensed version string, rendered using the selected + style. This is the most commonly used value for the project's version + string. The default "pep440" style yields strings like `0.11`, + `0.11+2.g1076c97`, or `0.11+2.g1076c97.dirty`. See the "Styles" section + below for alternative styles. + +* `['full-revisionid']`: detailed revision identifier. For Git, this is the + full SHA1 commit id, e.g. "1076c978a8d3cfc70f408fe5974aa6c092c949ac". + +* `['date']`: Date and time of the latest `HEAD` commit. For Git, it is the + commit date in ISO 8601 format. This will be None if the date is not + available. + +* `['dirty']`: a boolean, True if the tree has uncommitted changes. Note that + this is only accurate if run in a VCS checkout, otherwise it is likely to + be False or None + +* `['error']`: if the version string could not be computed, this will be set + to a string describing the problem, otherwise it will be None. It may be + useful to throw an exception in setup.py if this is set, to avoid e.g. + creating tarballs with a version string of "unknown". + +Some variants are more useful than others. Including `full-revisionid` in a +bug report should allow developers to reconstruct the exact code being tested +(or indicate the presence of local changes that should be shared with the +developers). `version` is suitable for display in an "about" box or a CLI +`--version` output: it can be easily compared against release notes and lists +of bugs fixed in various releases. + +The installer adds the following text to your `__init__.py` to place a basic +version in `YOURPROJECT.__version__`: + + from ._version import get_versions + __version__ = get_versions()['version'] + del get_versions + +## Styles + +The setup.cfg `style=` configuration controls how the VCS information is +rendered into a version string. + +The default style, "pep440", produces a PEP440-compliant string, equal to the +un-prefixed tag name for actual releases, and containing an additional "local +version" section with more detail for in-between builds. For Git, this is +TAG[+DISTANCE.gHEX[.dirty]] , using information from `git describe --tags +--dirty --always`. For example "0.11+2.g1076c97.dirty" indicates that the +tree is like the "1076c97" commit but has uncommitted changes (".dirty"), and +that this commit is two revisions ("+2") beyond the "0.11" tag. For released +software (exactly equal to a known tag), the identifier will only contain the +stripped tag, e.g. "0.11". + +Other styles are available. See [details.md](details.md) in the Versioneer +source tree for descriptions. + +## Debugging + +Versioneer tries to avoid fatal errors: if something goes wrong, it will tend +to return a version of "0+unknown". To investigate the problem, run `setup.py +version`, which will run the version-lookup code in a verbose mode, and will +display the full contents of `get_versions()` (including the `error` string, +which may help identify what went wrong). + +## Known Limitations + +Some situations are known to cause problems for Versioneer. This details the +most significant ones. More can be found on Github +[issues page](https://github.com/warner/python-versioneer/issues). + +### Subprojects + +Versioneer has limited support for source trees in which `setup.py` is not in +the root directory (e.g. `setup.py` and `.git/` are *not* siblings). The are +two common reasons why `setup.py` might not be in the root: + +* Source trees which contain multiple subprojects, such as + [Buildbot](https://github.com/buildbot/buildbot), which contains both + "master" and "slave" subprojects, each with their own `setup.py`, + `setup.cfg`, and `tox.ini`. Projects like these produce multiple PyPI + distributions (and upload multiple independently-installable tarballs). +* Source trees whose main purpose is to contain a C library, but which also + provide bindings to Python (and perhaps other langauges) in subdirectories. + +Versioneer will look for `.git` in parent directories, and most operations +should get the right version string. However `pip` and `setuptools` have bugs +and implementation details which frequently cause `pip install .` from a +subproject directory to fail to find a correct version string (so it usually +defaults to `0+unknown`). + +`pip install --editable .` should work correctly. `setup.py install` might +work too. + +Pip-8.1.1 is known to have this problem, but hopefully it will get fixed in +some later version. + +[Bug #38](https://github.com/warner/python-versioneer/issues/38) is tracking +this issue. The discussion in +[PR #61](https://github.com/warner/python-versioneer/pull/61) describes the +issue from the Versioneer side in more detail. +[pip PR#3176](https://github.com/pypa/pip/pull/3176) and +[pip PR#3615](https://github.com/pypa/pip/pull/3615) contain work to improve +pip to let Versioneer work correctly. + +Versioneer-0.16 and earlier only looked for a `.git` directory next to the +`setup.cfg`, so subprojects were completely unsupported with those releases. + +### Editable installs with setuptools <= 18.5 + +`setup.py develop` and `pip install --editable .` allow you to install a +project into a virtualenv once, then continue editing the source code (and +test) without re-installing after every change. + +"Entry-point scripts" (`setup(entry_points={"console_scripts": ..})`) are a +convenient way to specify executable scripts that should be installed along +with the python package. + +These both work as expected when using modern setuptools. When using +setuptools-18.5 or earlier, however, certain operations will cause +`pkg_resources.DistributionNotFound` errors when running the entrypoint +script, which must be resolved by re-installing the package. This happens +when the install happens with one version, then the egg_info data is +regenerated while a different version is checked out. Many setup.py commands +cause egg_info to be rebuilt (including `sdist`, `wheel`, and installing into +a different virtualenv), so this can be surprising. + +[Bug #83](https://github.com/warner/python-versioneer/issues/83) describes +this one, but upgrading to a newer version of setuptools should probably +resolve it. + +### Unicode version strings + +While Versioneer works (and is continually tested) with both Python 2 and +Python 3, it is not entirely consistent with bytes-vs-unicode distinctions. +Newer releases probably generate unicode version strings on py2. It's not +clear that this is wrong, but it may be surprising for applications when then +write these strings to a network connection or include them in bytes-oriented +APIs like cryptographic checksums. + +[Bug #71](https://github.com/warner/python-versioneer/issues/71) investigates +this question. + + +## Updating Versioneer + +To upgrade your project to a new release of Versioneer, do the following: + +* install the new Versioneer (`pip install -U versioneer` or equivalent) +* edit `setup.cfg`, if necessary, to include any new configuration settings + indicated by the release notes. See [UPGRADING](./UPGRADING.md) for details. +* re-run `versioneer install` in your source tree, to replace + `SRC/_version.py` +* commit any changed files + +## Future Directions + +This tool is designed to make it easily extended to other version-control +systems: all VCS-specific components are in separate directories like +src/git/ . The top-level `versioneer.py` script is assembled from these +components by running make-versioneer.py . In the future, make-versioneer.py +will take a VCS name as an argument, and will construct a version of +`versioneer.py` that is specific to the given VCS. It might also take the +configuration arguments that are currently provided manually during +installation by editing setup.py . Alternatively, it might go the other +direction and include code from all supported VCS systems, reducing the +number of intermediate scripts. + + +## License + +To make Versioneer easier to embed, all its code is dedicated to the public +domain. The `_version.py` that it creates is also in the public domain. +Specifically, both are released under the Creative Commons "Public Domain +Dedication" license (CC0-1.0), as described in +https://creativecommons.org/publicdomain/zero/1.0/ . + +""" + +from __future__ import print_function + +try: + import configparser +except ImportError: + import ConfigParser as configparser +import errno +import json +import os +import re +import subprocess +import sys + + +class VersioneerConfig: + """Container for Versioneer configuration parameters.""" + + +def get_root(): + """Get the project root directory. + + We require that all commands are run from the project root, i.e. the + directory that contains setup.py, setup.cfg, and versioneer.py . + """ + root = os.path.realpath(os.path.abspath(os.getcwd())) + setup_py = os.path.join(root, "setup.py") + versioneer_py = os.path.join(root, "versioneer.py") + if not (os.path.exists(setup_py) or os.path.exists(versioneer_py)): + # allow 'python path/to/setup.py COMMAND' + root = os.path.dirname(os.path.realpath(os.path.abspath(sys.argv[0]))) + setup_py = os.path.join(root, "setup.py") + versioneer_py = os.path.join(root, "versioneer.py") + if not (os.path.exists(setup_py) or os.path.exists(versioneer_py)): + err = ( + "Versioneer was unable to run the project root directory. " + "Versioneer requires setup.py to be executed from " + "its immediate directory (like 'python setup.py COMMAND'), " + "or in a way that lets it use sys.argv[0] to find the root " + "(like 'python path/to/setup.py COMMAND')." + ) + raise VersioneerBadRootError(err) + try: + # Certain runtime workflows (setup.py install/develop in a setuptools + # tree) execute all dependencies in a single python process, so + # "versioneer" may be imported multiple times, and python's shared + # module-import table will cache the first one. So we can't use + # os.path.dirname(__file__), as that will find whichever + # versioneer.py was first imported, even in later projects. + me = os.path.realpath(os.path.abspath(__file__)) + me_dir = os.path.normcase(os.path.splitext(me)[0]) + vsr_dir = os.path.normcase(os.path.splitext(versioneer_py)[0]) + if me_dir != vsr_dir: + print( + "Warning: build in %s is using versioneer.py from %s" + % (os.path.dirname(me), versioneer_py) + ) + except NameError: + pass + return root + + +def get_config_from_root(root): + """Read the project setup.cfg file to determine Versioneer config.""" + # This might raise EnvironmentError (if setup.cfg is missing), or + # configparser.NoSectionError (if it lacks a [versioneer] section), or + # configparser.NoOptionError (if it lacks "VCS="). See the docstring at + # the top of versioneer.py for instructions on writing your setup.cfg . + setup_cfg = os.path.join(root, "setup.cfg") + parser = configparser.SafeConfigParser() + with open(setup_cfg, "r") as f: + parser.readfp(f) + VCS = parser.get("versioneer", "VCS") # mandatory + + def get(parser, name): + if parser.has_option("versioneer", name): + return parser.get("versioneer", name) + return None + + cfg = VersioneerConfig() + cfg.VCS = VCS + cfg.style = get(parser, "style") or "" + cfg.versionfile_source = get(parser, "versionfile_source") + cfg.versionfile_build = get(parser, "versionfile_build") + cfg.tag_prefix = get(parser, "tag_prefix") + if cfg.tag_prefix in ("''", '""'): + cfg.tag_prefix = "" + cfg.parentdir_prefix = get(parser, "parentdir_prefix") + cfg.verbose = get(parser, "verbose") + return cfg + + +class NotThisMethod(Exception): + """Exception raised if a method is not valid for the current scenario.""" + + +# these dictionaries contain VCS-specific tools +LONG_VERSION_PY = {} +HANDLERS = {} + + +def register_vcs_handler(vcs, method): # decorator + """Decorator to mark a method as the handler for a particular VCS.""" + + def decorate(f): + """Store f in HANDLERS[vcs][method].""" + if vcs not in HANDLERS: + HANDLERS[vcs] = {} + HANDLERS[vcs][method] = f + return f + + return decorate + + +def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=None): + """Call the given command(s).""" + assert isinstance(commands, list) + p = None + for c in commands: + try: + dispcmd = str([c] + args) + # remember shell=False, so use git.cmd on windows, not just git + p = subprocess.Popen( + [c] + args, + cwd=cwd, + env=env, + stdout=subprocess.PIPE, + stderr=(subprocess.PIPE if hide_stderr else None), + ) + break + except EnvironmentError: + e = sys.exc_info()[1] + if e.errno == errno.ENOENT: + continue + if verbose: + print("unable to run %s" % dispcmd) + print(e) + return None, None + else: + if verbose: + print("unable to find command, tried %s" % (commands,)) + return None, None + stdout = p.communicate()[0].strip() + if sys.version_info[0] >= 3: + stdout = stdout.decode() + if p.returncode != 0: + if verbose: + print("unable to run %s (error)" % dispcmd) + print("stdout was %s" % stdout) + return None, p.returncode + return stdout, p.returncode + + +LONG_VERSION_PY[ + "git" +] = ''' +# This file helps to compute a version number in source trees obtained from +# git-archive tarball (such as those provided by githubs download-from-tag +# feature). Distribution tarballs (built by setup.py sdist) and build +# directories (produced by setup.py build) will contain a much shorter file +# that just contains the computed version number. + +# This file is released into the public domain. Generated by +# versioneer-0.18 (https://github.com/warner/python-versioneer) + +"""Git implementation of _version.py.""" + +import errno +import os +import re +import subprocess +import sys + + +def get_keywords(): + """Get the keywords needed to look up the version information.""" + # these strings will be replaced by git during git-archive. + # setup.py/versioneer.py will grep for the variable names, so they must + # each be defined on a line of their own. _version.py will just call + # get_keywords(). + git_refnames = "%(DOLLAR)sFormat:%%d%(DOLLAR)s" + git_full = "%(DOLLAR)sFormat:%%H%(DOLLAR)s" + git_date = "%(DOLLAR)sFormat:%%ci%(DOLLAR)s" + keywords = {"refnames": git_refnames, "full": git_full, "date": git_date} + return keywords + + +class VersioneerConfig: + """Container for Versioneer configuration parameters.""" + + +def get_config(): + """Create, populate and return the VersioneerConfig() object.""" + # these strings are filled in when 'setup.py versioneer' creates + # _version.py + cfg = VersioneerConfig() + cfg.VCS = "git" + cfg.style = "%(STYLE)s" + cfg.tag_prefix = "%(TAG_PREFIX)s" + cfg.parentdir_prefix = "%(PARENTDIR_PREFIX)s" + cfg.versionfile_source = "%(VERSIONFILE_SOURCE)s" + cfg.verbose = False + return cfg + + +class NotThisMethod(Exception): + """Exception raised if a method is not valid for the current scenario.""" + + +LONG_VERSION_PY = {} +HANDLERS = {} + + +def register_vcs_handler(vcs, method): # decorator + """Decorator to mark a method as the handler for a particular VCS.""" + def decorate(f): + """Store f in HANDLERS[vcs][method].""" + if vcs not in HANDLERS: + HANDLERS[vcs] = {} + HANDLERS[vcs][method] = f + return f + return decorate + + +def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, + env=None): + """Call the given command(s).""" + assert isinstance(commands, list) + p = None + for c in commands: + try: + dispcmd = str([c] + args) + # remember shell=False, so use git.cmd on windows, not just git + p = subprocess.Popen([c] + args, cwd=cwd, env=env, + stdout=subprocess.PIPE, + stderr=(subprocess.PIPE if hide_stderr + else None)) + break + except EnvironmentError: + e = sys.exc_info()[1] + if e.errno == errno.ENOENT: + continue + if verbose: + print("unable to run %%s" %% dispcmd) + print(e) + return None, None + else: + if verbose: + print("unable to find command, tried %%s" %% (commands,)) + return None, None + stdout = p.communicate()[0].strip() + if sys.version_info[0] >= 3: + stdout = stdout.decode() + if p.returncode != 0: + if verbose: + print("unable to run %%s (error)" %% dispcmd) + print("stdout was %%s" %% stdout) + return None, p.returncode + return stdout, p.returncode + + +def versions_from_parentdir(parentdir_prefix, root, verbose): + """Try to determine the version from the parent directory name. + + Source tarballs conventionally unpack into a directory that includes both + the project name and a version string. We will also support searching up + two directory levels for an appropriately named parent directory + """ + rootdirs = [] + + for i in range(3): + dirname = os.path.basename(root) + if dirname.startswith(parentdir_prefix): + return {"version": dirname[len(parentdir_prefix):], + "full-revisionid": None, + "dirty": False, "error": None, "date": None} + else: + rootdirs.append(root) + root = os.path.dirname(root) # up a level + + if verbose: + print("Tried directories %%s but none started with prefix %%s" %% + (str(rootdirs), parentdir_prefix)) + raise NotThisMethod("rootdir doesn't start with parentdir_prefix") + + +@register_vcs_handler("git", "get_keywords") +def git_get_keywords(versionfile_abs): + """Extract version information from the given file.""" + # the code embedded in _version.py can just fetch the value of these + # keywords. When used from setup.py, we don't want to import _version.py, + # so we do it with a regexp instead. This function is not used from + # _version.py. + keywords = {} + try: + f = open(versionfile_abs, "r") + for line in f.readlines(): + if line.strip().startswith("git_refnames ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["refnames"] = mo.group(1) + if line.strip().startswith("git_full ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["full"] = mo.group(1) + if line.strip().startswith("git_date ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["date"] = mo.group(1) + f.close() + except EnvironmentError: + pass + return keywords + + +@register_vcs_handler("git", "keywords") +def git_versions_from_keywords(keywords, tag_prefix, verbose): + """Get version information from git keywords.""" + if not keywords: + raise NotThisMethod("no keywords at all, weird") + date = keywords.get("date") + if date is not None: + # git-2.2.0 added "%%cI", which expands to an ISO-8601 -compliant + # datestamp. However we prefer "%%ci" (which expands to an "ISO-8601 + # -like" string, which we must then edit to make compliant), because + # it's been around since git-1.5.3, and it's too difficult to + # discover which version we're using, or to work around using an + # older one. + date = date.strip().replace(" ", "T", 1).replace(" ", "", 1) + refnames = keywords["refnames"].strip() + if refnames.startswith("$Format"): + if verbose: + print("keywords are unexpanded, not using") + raise NotThisMethod("unexpanded keywords, not a git-archive tarball") + refs = set([r.strip() for r in refnames.strip("()").split(",")]) + # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of + # just "foo-1.0". If we see a "tag: " prefix, prefer those. + TAG = "tag: " + tags = set([r[len(TAG):] for r in refs if r.startswith(TAG)]) + if not tags: + # Either we're using git < 1.8.3, or there really are no tags. We use + # a heuristic: assume all version tags have a digit. The old git %%d + # expansion behaves like git log --decorate=short and strips out the + # refs/heads/ and refs/tags/ prefixes that would let us distinguish + # between branches and tags. By ignoring refnames without digits, we + # filter out many common branch names like "release" and + # "stabilization", as well as "HEAD" and "master". + tags = set([r for r in refs if re.search(r'\d', r)]) + if verbose: + print("discarding '%%s', no digits" %% ",".join(refs - tags)) + if verbose: + print("likely tags: %%s" %% ",".join(sorted(tags))) + for ref in sorted(tags): + # sorting will prefer e.g. "2.0" over "2.0rc1" + if ref.startswith(tag_prefix): + r = ref[len(tag_prefix):] + if verbose: + print("picking %%s" %% r) + return {"version": r, + "full-revisionid": keywords["full"].strip(), + "dirty": False, "error": None, + "date": date} + # no suitable tags, so version is "0+unknown", but full hex is still there + if verbose: + print("no suitable tags, using unknown + full revision id") + return {"version": "0+unknown", + "full-revisionid": keywords["full"].strip(), + "dirty": False, "error": "no suitable tags", "date": None} + + +@register_vcs_handler("git", "pieces_from_vcs") +def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): + """Get version from 'git describe' in the root of the source tree. + + This only gets called if the git-archive 'subst' keywords were *not* + expanded, and _version.py hasn't already been rewritten with a short + version string, meaning we're inside a checked out source tree. + """ + GITS = ["git"] + if sys.platform == "win32": + GITS = ["git.cmd", "git.exe"] + + out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, + hide_stderr=True) + if rc != 0: + if verbose: + print("Directory %%s not under git control" %% root) + raise NotThisMethod("'git rev-parse --git-dir' returned error") + + # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] + # if there isn't one, this yields HEX[-dirty] (no NUM) + describe_out, rc = run_command(GITS, ["describe", "--tags", "--dirty", + "--always", "--long", + "--match", "%%s*" %% tag_prefix], + cwd=root) + # --long was added in git-1.5.5 + if describe_out is None: + raise NotThisMethod("'git describe' failed") + describe_out = describe_out.strip() + full_out, rc = run_command(GITS, ["rev-parse", "HEAD"], cwd=root) + if full_out is None: + raise NotThisMethod("'git rev-parse' failed") + full_out = full_out.strip() + + pieces = {} + pieces["long"] = full_out + pieces["short"] = full_out[:7] # maybe improved later + pieces["error"] = None + + # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty] + # TAG might have hyphens. + git_describe = describe_out + + # look for -dirty suffix + dirty = git_describe.endswith("-dirty") + pieces["dirty"] = dirty + if dirty: + git_describe = git_describe[:git_describe.rindex("-dirty")] + + # now we have TAG-NUM-gHEX or HEX + + if "-" in git_describe: + # TAG-NUM-gHEX + mo = re.search(r'^(.+)-(\d+)-g([0-9a-f]+)$', git_describe) + if not mo: + # unparseable. Maybe git-describe is misbehaving? + pieces["error"] = ("unable to parse git-describe output: '%%s'" + %% describe_out) + return pieces + + # tag + full_tag = mo.group(1) + if not full_tag.startswith(tag_prefix): + if verbose: + fmt = "tag '%%s' doesn't start with prefix '%%s'" + print(fmt %% (full_tag, tag_prefix)) + pieces["error"] = ("tag '%%s' doesn't start with prefix '%%s'" + %% (full_tag, tag_prefix)) + return pieces + pieces["closest-tag"] = full_tag[len(tag_prefix):] + + # distance: number of commits since tag + pieces["distance"] = int(mo.group(2)) + + # commit: short hex revision ID + pieces["short"] = mo.group(3) + + else: + # HEX: no tags + pieces["closest-tag"] = None + count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], + cwd=root) + pieces["distance"] = int(count_out) # total number of commits + + # commit date: see ISO-8601 comment in git_versions_from_keywords() + date = run_command(GITS, ["show", "-s", "--format=%%ci", "HEAD"], + cwd=root)[0].strip() + pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) + + return pieces + + +def plus_or_dot(pieces): + """Return a + if we don't already have one, else return a .""" + if "+" in pieces.get("closest-tag", ""): + return "." + return "+" + + +def render_pep440(pieces): + """Build up version string, with post-release "local version identifier". + + Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you + get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty + + Exceptions: + 1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += plus_or_dot(pieces) + rendered += "%%d.g%%s" %% (pieces["distance"], pieces["short"]) + if pieces["dirty"]: + rendered += ".dirty" + else: + # exception #1 + rendered = "0+untagged.%%d.g%%s" %% (pieces["distance"], + pieces["short"]) + if pieces["dirty"]: + rendered += ".dirty" + return rendered + + +def render_pep440_pre(pieces): + """TAG[.post.devDISTANCE] -- No -dirty. + + Exceptions: + 1: no tags. 0.post.devDISTANCE + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"]: + rendered += ".post.dev%%d" %% pieces["distance"] + else: + # exception #1 + rendered = "0.post.dev%%d" %% pieces["distance"] + return rendered + + +def render_pep440_post(pieces): + """TAG[.postDISTANCE[.dev0]+gHEX] . + + The ".dev0" means dirty. Note that .dev0 sorts backwards + (a dirty tree will appear "older" than the corresponding clean one), + but you shouldn't be releasing software with -dirty anyways. + + Exceptions: + 1: no tags. 0.postDISTANCE[.dev0] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += ".post%%d" %% pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + rendered += plus_or_dot(pieces) + rendered += "g%%s" %% pieces["short"] + else: + # exception #1 + rendered = "0.post%%d" %% pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + rendered += "+g%%s" %% pieces["short"] + return rendered + + +def render_pep440_old(pieces): + """TAG[.postDISTANCE[.dev0]] . + + The ".dev0" means dirty. + + Eexceptions: + 1: no tags. 0.postDISTANCE[.dev0] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += ".post%%d" %% pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + else: + # exception #1 + rendered = "0.post%%d" %% pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + return rendered + + +def render_git_describe(pieces): + """TAG[-DISTANCE-gHEX][-dirty]. + + Like 'git describe --tags --dirty --always'. + + Exceptions: + 1: no tags. HEX[-dirty] (note: no 'g' prefix) + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"]: + rendered += "-%%d-g%%s" %% (pieces["distance"], pieces["short"]) + else: + # exception #1 + rendered = pieces["short"] + if pieces["dirty"]: + rendered += "-dirty" + return rendered + + +def render_git_describe_long(pieces): + """TAG-DISTANCE-gHEX[-dirty]. + + Like 'git describe --tags --dirty --always -long'. + The distance/hash is unconditional. + + Exceptions: + 1: no tags. HEX[-dirty] (note: no 'g' prefix) + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + rendered += "-%%d-g%%s" %% (pieces["distance"], pieces["short"]) + else: + # exception #1 + rendered = pieces["short"] + if pieces["dirty"]: + rendered += "-dirty" + return rendered + + +def render(pieces, style): + """Render the given version pieces into the requested style.""" + if pieces["error"]: + return {"version": "unknown", + "full-revisionid": pieces.get("long"), + "dirty": None, + "error": pieces["error"], + "date": None} + + if not style or style == "default": + style = "pep440" # the default + + if style == "pep440": + rendered = render_pep440(pieces) + elif style == "pep440-pre": + rendered = render_pep440_pre(pieces) + elif style == "pep440-post": + rendered = render_pep440_post(pieces) + elif style == "pep440-old": + rendered = render_pep440_old(pieces) + elif style == "git-describe": + rendered = render_git_describe(pieces) + elif style == "git-describe-long": + rendered = render_git_describe_long(pieces) + else: + raise ValueError("unknown style '%%s'" %% style) + + return {"version": rendered, "full-revisionid": pieces["long"], + "dirty": pieces["dirty"], "error": None, + "date": pieces.get("date")} + + +def get_versions(): + """Get version information or return default if unable to do so.""" + # I am in _version.py, which lives at ROOT/VERSIONFILE_SOURCE. If we have + # __file__, we can work backwards from there to the root. Some + # py2exe/bbfreeze/non-CPython implementations don't do __file__, in which + # case we can only use expanded keywords. + + cfg = get_config() + verbose = cfg.verbose + + try: + return git_versions_from_keywords(get_keywords(), cfg.tag_prefix, + verbose) + except NotThisMethod: + pass + + try: + root = os.path.realpath(__file__) + # versionfile_source is the relative path from the top of the source + # tree (where the .git directory might live) to this file. Invert + # this to find the root from __file__. + for i in cfg.versionfile_source.split('/'): + root = os.path.dirname(root) + except NameError: + return {"version": "0+unknown", "full-revisionid": None, + "dirty": None, + "error": "unable to find root of source tree", + "date": None} + + try: + pieces = git_pieces_from_vcs(cfg.tag_prefix, root, verbose) + return render(pieces, cfg.style) + except NotThisMethod: + pass + + try: + if cfg.parentdir_prefix: + return versions_from_parentdir(cfg.parentdir_prefix, root, verbose) + except NotThisMethod: + pass + + return {"version": "0+unknown", "full-revisionid": None, + "dirty": None, + "error": "unable to compute version", "date": None} +''' + + +@register_vcs_handler("git", "get_keywords") +def git_get_keywords(versionfile_abs): + """Extract version information from the given file.""" + # the code embedded in _version.py can just fetch the value of these + # keywords. When used from setup.py, we don't want to import _version.py, + # so we do it with a regexp instead. This function is not used from + # _version.py. + keywords = {} + try: + f = open(versionfile_abs, "r") + for line in f.readlines(): + if line.strip().startswith("git_refnames ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["refnames"] = mo.group(1) + if line.strip().startswith("git_full ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["full"] = mo.group(1) + if line.strip().startswith("git_date ="): + mo = re.search(r'=\s*"(.*)"', line) + if mo: + keywords["date"] = mo.group(1) + f.close() + except EnvironmentError: + pass + return keywords + + +@register_vcs_handler("git", "keywords") +def git_versions_from_keywords(keywords, tag_prefix, verbose): + """Get version information from git keywords.""" + if not keywords: + raise NotThisMethod("no keywords at all, weird") + date = keywords.get("date") + if date is not None: + # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant + # datestamp. However we prefer "%ci" (which expands to an "ISO-8601 + # -like" string, which we must then edit to make compliant), because + # it's been around since git-1.5.3, and it's too difficult to + # discover which version we're using, or to work around using an + # older one. + date = date.strip().replace(" ", "T", 1).replace(" ", "", 1) + refnames = keywords["refnames"].strip() + if refnames.startswith("$Format"): + if verbose: + print("keywords are unexpanded, not using") + raise NotThisMethod("unexpanded keywords, not a git-archive tarball") + refs = set([r.strip() for r in refnames.strip("()").split(",")]) + # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of + # just "foo-1.0". If we see a "tag: " prefix, prefer those. + TAG = "tag: " + tags = set([r[len(TAG) :] for r in refs if r.startswith(TAG)]) + if not tags: + # Either we're using git < 1.8.3, or there really are no tags. We use + # a heuristic: assume all version tags have a digit. The old git %d + # expansion behaves like git log --decorate=short and strips out the + # refs/heads/ and refs/tags/ prefixes that would let us distinguish + # between branches and tags. By ignoring refnames without digits, we + # filter out many common branch names like "release" and + # "stabilization", as well as "HEAD" and "master". + tags = set([r for r in refs if re.search(r"\d", r)]) + if verbose: + print("discarding '%s', no digits" % ",".join(refs - tags)) + if verbose: + print("likely tags: %s" % ",".join(sorted(tags))) + for ref in sorted(tags): + # sorting will prefer e.g. "2.0" over "2.0rc1" + if ref.startswith(tag_prefix): + r = ref[len(tag_prefix) :] + if verbose: + print("picking %s" % r) + return { + "version": r, + "full-revisionid": keywords["full"].strip(), + "dirty": False, + "error": None, + "date": date, + } + # no suitable tags, so version is "0+unknown", but full hex is still there + if verbose: + print("no suitable tags, using unknown + full revision id") + return { + "version": "0+unknown", + "full-revisionid": keywords["full"].strip(), + "dirty": False, + "error": "no suitable tags", + "date": None, + } + + +@register_vcs_handler("git", "pieces_from_vcs") +def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command): + """Get version from 'git describe' in the root of the source tree. + + This only gets called if the git-archive 'subst' keywords were *not* + expanded, and _version.py hasn't already been rewritten with a short + version string, meaning we're inside a checked out source tree. + """ + GITS = ["git"] + if sys.platform == "win32": + GITS = ["git.cmd", "git.exe"] + + out, rc = run_command(GITS, ["rev-parse", "--git-dir"], cwd=root, hide_stderr=True) + if rc != 0: + if verbose: + print("Directory %s not under git control" % root) + raise NotThisMethod("'git rev-parse --git-dir' returned error") + + # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] + # if there isn't one, this yields HEX[-dirty] (no NUM) + describe_out, rc = run_command( + GITS, + [ + "describe", + "--tags", + "--dirty", + "--always", + "--long", + "--match", + "%s*" % tag_prefix, + ], + cwd=root, + ) + # --long was added in git-1.5.5 + if describe_out is None: + raise NotThisMethod("'git describe' failed") + describe_out = describe_out.strip() + full_out, rc = run_command(GITS, ["rev-parse", "HEAD"], cwd=root) + if full_out is None: + raise NotThisMethod("'git rev-parse' failed") + full_out = full_out.strip() + + pieces = {} + pieces["long"] = full_out + pieces["short"] = full_out[:7] # maybe improved later + pieces["error"] = None + + # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty] + # TAG might have hyphens. + git_describe = describe_out + + # look for -dirty suffix + dirty = git_describe.endswith("-dirty") + pieces["dirty"] = dirty + if dirty: + git_describe = git_describe[: git_describe.rindex("-dirty")] + + # now we have TAG-NUM-gHEX or HEX + + if "-" in git_describe: + # TAG-NUM-gHEX + mo = re.search(r"^(.+)-(\d+)-g([0-9a-f]+)$", git_describe) + if not mo: + # unparseable. Maybe git-describe is misbehaving? + pieces["error"] = "unable to parse git-describe output: '%s'" % describe_out + return pieces + + # tag + full_tag = mo.group(1) + if not full_tag.startswith(tag_prefix): + if verbose: + fmt = "tag '%s' doesn't start with prefix '%s'" + print(fmt % (full_tag, tag_prefix)) + pieces["error"] = "tag '%s' doesn't start with prefix '%s'" % ( + full_tag, + tag_prefix, + ) + return pieces + pieces["closest-tag"] = full_tag[len(tag_prefix) :] + + # distance: number of commits since tag + pieces["distance"] = int(mo.group(2)) + + # commit: short hex revision ID + pieces["short"] = mo.group(3) + + else: + # HEX: no tags + pieces["closest-tag"] = None + count_out, rc = run_command(GITS, ["rev-list", "HEAD", "--count"], cwd=root) + pieces["distance"] = int(count_out) # total number of commits + + # commit date: see ISO-8601 comment in git_versions_from_keywords() + date = run_command(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[ + 0 + ].strip() + pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1) + + return pieces + + +def do_vcs_install(manifest_in, versionfile_source, ipy): + """Git-specific installation logic for Versioneer. + + For Git, this means creating/changing .gitattributes to mark _version.py + for export-subst keyword substitution. + """ + GITS = ["git"] + if sys.platform == "win32": + GITS = ["git.cmd", "git.exe"] + files = [manifest_in, versionfile_source] + if ipy: + files.append(ipy) + try: + me = __file__ + if me.endswith(".pyc") or me.endswith(".pyo"): + me = os.path.splitext(me)[0] + ".py" + versioneer_file = os.path.relpath(me) + except NameError: + versioneer_file = "versioneer.py" + files.append(versioneer_file) + present = False + try: + f = open(".gitattributes", "r") + for line in f.readlines(): + if line.strip().startswith(versionfile_source): + if "export-subst" in line.strip().split()[1:]: + present = True + f.close() + except EnvironmentError: + pass + if not present: + f = open(".gitattributes", "a+") + f.write("%s export-subst\n" % versionfile_source) + f.close() + files.append(".gitattributes") + run_command(GITS, ["add", "--"] + files) + + +def versions_from_parentdir(parentdir_prefix, root, verbose): + """Try to determine the version from the parent directory name. + + Source tarballs conventionally unpack into a directory that includes both + the project name and a version string. We will also support searching up + two directory levels for an appropriately named parent directory + """ + rootdirs = [] + + for i in range(3): + dirname = os.path.basename(root) + if dirname.startswith(parentdir_prefix): + return { + "version": dirname[len(parentdir_prefix) :], + "full-revisionid": None, + "dirty": False, + "error": None, + "date": None, + } + else: + rootdirs.append(root) + root = os.path.dirname(root) # up a level + + if verbose: + print( + "Tried directories %s but none started with prefix %s" + % (str(rootdirs), parentdir_prefix) + ) + raise NotThisMethod("rootdir doesn't start with parentdir_prefix") + + +SHORT_VERSION_PY = """ +# This file was generated by 'versioneer.py' (0.18) from +# revision-control system data, or from the parent directory name of an +# unpacked source archive. Distribution tarballs contain a pre-generated copy +# of this file. + +import json + +version_json = ''' +%s +''' # END VERSION_JSON + + +def get_versions(): + return json.loads(version_json) +""" + + +def versions_from_file(filename): + """Try to determine the version from _version.py if present.""" + try: + with open(filename) as f: + contents = f.read() + except EnvironmentError: + raise NotThisMethod("unable to read _version.py") + mo = re.search( + r"version_json = '''\n(.*)''' # END VERSION_JSON", contents, re.M | re.S + ) + if not mo: + mo = re.search( + r"version_json = '''\r\n(.*)''' # END VERSION_JSON", contents, re.M | re.S + ) + if not mo: + raise NotThisMethod("no version_json in _version.py") + return json.loads(mo.group(1)) + + +def write_to_version_file(filename, versions): + """Write the given version number to the given _version.py file.""" + os.unlink(filename) + contents = json.dumps(versions, sort_keys=True, indent=1, separators=(",", ": ")) + with open(filename, "w") as f: + f.write(SHORT_VERSION_PY % contents) + + print("set %s to '%s'" % (filename, versions["version"])) + + +def plus_or_dot(pieces): + """Return a + if we don't already have one, else return a .""" + if "+" in pieces.get("closest-tag", ""): + return "." + return "+" + + +def render_pep440(pieces): + """Build up version string, with post-release "local version identifier". + + Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you + get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty + + Exceptions: + 1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += plus_or_dot(pieces) + rendered += "%d.g%s" % (pieces["distance"], pieces["short"]) + if pieces["dirty"]: + rendered += ".dirty" + else: + # exception #1 + rendered = "0+untagged.%d.g%s" % (pieces["distance"], pieces["short"]) + if pieces["dirty"]: + rendered += ".dirty" + return rendered + + +def render_pep440_pre(pieces): + """TAG[.post.devDISTANCE] -- No -dirty. + + Exceptions: + 1: no tags. 0.post.devDISTANCE + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"]: + rendered += ".post.dev%d" % pieces["distance"] + else: + # exception #1 + rendered = "0.post.dev%d" % pieces["distance"] + return rendered + + +def render_pep440_post(pieces): + """TAG[.postDISTANCE[.dev0]+gHEX] . + + The ".dev0" means dirty. Note that .dev0 sorts backwards + (a dirty tree will appear "older" than the corresponding clean one), + but you shouldn't be releasing software with -dirty anyways. + + Exceptions: + 1: no tags. 0.postDISTANCE[.dev0] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += ".post%d" % pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + rendered += plus_or_dot(pieces) + rendered += "g%s" % pieces["short"] + else: + # exception #1 + rendered = "0.post%d" % pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + rendered += "+g%s" % pieces["short"] + return rendered + + +def render_pep440_old(pieces): + """TAG[.postDISTANCE[.dev0]] . + + The ".dev0" means dirty. + + Eexceptions: + 1: no tags. 0.postDISTANCE[.dev0] + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"] or pieces["dirty"]: + rendered += ".post%d" % pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + else: + # exception #1 + rendered = "0.post%d" % pieces["distance"] + if pieces["dirty"]: + rendered += ".dev0" + return rendered + + +def render_git_describe(pieces): + """TAG[-DISTANCE-gHEX][-dirty]. + + Like 'git describe --tags --dirty --always'. + + Exceptions: + 1: no tags. HEX[-dirty] (note: no 'g' prefix) + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + if pieces["distance"]: + rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) + else: + # exception #1 + rendered = pieces["short"] + if pieces["dirty"]: + rendered += "-dirty" + return rendered + + +def render_git_describe_long(pieces): + """TAG-DISTANCE-gHEX[-dirty]. + + Like 'git describe --tags --dirty --always -long'. + The distance/hash is unconditional. + + Exceptions: + 1: no tags. HEX[-dirty] (note: no 'g' prefix) + """ + if pieces["closest-tag"]: + rendered = pieces["closest-tag"] + rendered += "-%d-g%s" % (pieces["distance"], pieces["short"]) + else: + # exception #1 + rendered = pieces["short"] + if pieces["dirty"]: + rendered += "-dirty" + return rendered + + +def render(pieces, style): + """Render the given version pieces into the requested style.""" + if pieces["error"]: + return { + "version": "unknown", + "full-revisionid": pieces.get("long"), + "dirty": None, + "error": pieces["error"], + "date": None, + } + + if not style or style == "default": + style = "pep440" # the default + + if style == "pep440": + rendered = render_pep440(pieces) + elif style == "pep440-pre": + rendered = render_pep440_pre(pieces) + elif style == "pep440-post": + rendered = render_pep440_post(pieces) + elif style == "pep440-old": + rendered = render_pep440_old(pieces) + elif style == "git-describe": + rendered = render_git_describe(pieces) + elif style == "git-describe-long": + rendered = render_git_describe_long(pieces) + else: + raise ValueError("unknown style '%s'" % style) + + return { + "version": rendered, + "full-revisionid": pieces["long"], + "dirty": pieces["dirty"], + "error": None, + "date": pieces.get("date"), + } + + +class VersioneerBadRootError(Exception): + """The project root directory is unknown or missing key files.""" + + +def get_versions(verbose=False): + """Get the project version from whatever source is available. + + Returns dict with two keys: 'version' and 'full'. + """ + if "versioneer" in sys.modules: + # see the discussion in cmdclass.py:get_cmdclass() + del sys.modules["versioneer"] + + root = get_root() + cfg = get_config_from_root(root) + + assert cfg.VCS is not None, "please set [versioneer]VCS= in setup.cfg" + handlers = HANDLERS.get(cfg.VCS) + assert handlers, "unrecognized VCS '%s'" % cfg.VCS + verbose = verbose or cfg.verbose + assert ( + cfg.versionfile_source is not None + ), "please set versioneer.versionfile_source" + assert cfg.tag_prefix is not None, "please set versioneer.tag_prefix" + + versionfile_abs = os.path.join(root, cfg.versionfile_source) + + # extract version from first of: _version.py, VCS command (e.g. 'git + # describe'), parentdir. This is meant to work for developers using a + # source checkout, for users of a tarball created by 'setup.py sdist', + # and for users of a tarball/zipball created by 'git archive' or github's + # download-from-tag feature or the equivalent in other VCSes. + + get_keywords_f = handlers.get("get_keywords") + from_keywords_f = handlers.get("keywords") + if get_keywords_f and from_keywords_f: + try: + keywords = get_keywords_f(versionfile_abs) + ver = from_keywords_f(keywords, cfg.tag_prefix, verbose) + if verbose: + print("got version from expanded keyword %s" % ver) + return ver + except NotThisMethod: + pass + + try: + ver = versions_from_file(versionfile_abs) + if verbose: + print("got version from file %s %s" % (versionfile_abs, ver)) + return ver + except NotThisMethod: + pass + + from_vcs_f = handlers.get("pieces_from_vcs") + if from_vcs_f: + try: + pieces = from_vcs_f(cfg.tag_prefix, root, verbose) + ver = render(pieces, cfg.style) + if verbose: + print("got version from VCS %s" % ver) + return ver + except NotThisMethod: + pass + + try: + if cfg.parentdir_prefix: + ver = versions_from_parentdir(cfg.parentdir_prefix, root, verbose) + if verbose: + print("got version from parentdir %s" % ver) + return ver + except NotThisMethod: + pass + + if verbose: + print("unable to compute version") + + return { + "version": "0+unknown", + "full-revisionid": None, + "dirty": None, + "error": "unable to compute version", + "date": None, + } + + +def get_version(): + """Get the short version string for this project.""" + return get_versions()["version"] + + +def get_cmdclass(): + """Get the custom setuptools/distutils subclasses used by Versioneer.""" + if "versioneer" in sys.modules: + del sys.modules["versioneer"] + # this fixes the "python setup.py develop" case (also 'install' and + # 'easy_install .'), in which subdependencies of the main project are + # built (using setup.py bdist_egg) in the same python process. Assume + # a main project A and a dependency B, which use different versions + # of Versioneer. A's setup.py imports A's Versioneer, leaving it in + # sys.modules by the time B's setup.py is executed, causing B to run + # with the wrong versioneer. Setuptools wraps the sub-dep builds in a + # sandbox that restores sys.modules to it's pre-build state, so the + # parent is protected against the child's "import versioneer". By + # removing ourselves from sys.modules here, before the child build + # happens, we protect the child from the parent's versioneer too. + # Also see https://github.com/warner/python-versioneer/issues/52 + + cmds = {} + + # we add "version" to both distutils and setuptools + from distutils.core import Command + + class cmd_version(Command): + description = "report generated version string" + user_options = [] + boolean_options = [] + + def initialize_options(self): + pass + + def finalize_options(self): + pass + + def run(self): + vers = get_versions(verbose=True) + print("Version: %s" % vers["version"]) + print(" full-revisionid: %s" % vers.get("full-revisionid")) + print(" dirty: %s" % vers.get("dirty")) + print(" date: %s" % vers.get("date")) + if vers["error"]: + print(" error: %s" % vers["error"]) + + cmds["version"] = cmd_version + + # we override "build_py" in both distutils and setuptools + # + # most invocation pathways end up running build_py: + # distutils/build -> build_py + # distutils/install -> distutils/build ->.. + # setuptools/bdist_wheel -> distutils/install ->.. + # setuptools/bdist_egg -> distutils/install_lib -> build_py + # setuptools/install -> bdist_egg ->.. + # setuptools/develop -> ? + # pip install: + # copies source tree to a tempdir before running egg_info/etc + # if .git isn't copied too, 'git describe' will fail + # then does setup.py bdist_wheel, or sometimes setup.py install + # setup.py egg_info -> ? + + # we override different "build_py" commands for both environments + if "setuptools" in sys.modules: + from setuptools.command.build_py import build_py as _build_py + else: + from distutils.command.build_py import build_py as _build_py + + class cmd_build_py(_build_py): + def run(self): + root = get_root() + cfg = get_config_from_root(root) + versions = get_versions() + _build_py.run(self) + # now locate _version.py in the new build/ directory and replace + # it with an updated value + if cfg.versionfile_build: + target_versionfile = os.path.join(self.build_lib, cfg.versionfile_build) + print("UPDATING %s" % target_versionfile) + write_to_version_file(target_versionfile, versions) + + cmds["build_py"] = cmd_build_py + + if "cx_Freeze" in sys.modules: # cx_freeze enabled? + from cx_Freeze.dist import build_exe as _build_exe + + # nczeczulin reports that py2exe won't like the pep440-style string + # as FILEVERSION, but it can be used for PRODUCTVERSION, e.g. + # setup(console=[{ + # "version": versioneer.get_version().split("+", 1)[0], # FILEVERSION + # "product_version": versioneer.get_version(), + # ... + + class cmd_build_exe(_build_exe): + def run(self): + root = get_root() + cfg = get_config_from_root(root) + versions = get_versions() + target_versionfile = cfg.versionfile_source + print("UPDATING %s" % target_versionfile) + write_to_version_file(target_versionfile, versions) + + _build_exe.run(self) + os.unlink(target_versionfile) + with open(cfg.versionfile_source, "w") as f: + LONG = LONG_VERSION_PY[cfg.VCS] + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + + cmds["build_exe"] = cmd_build_exe + del cmds["build_py"] + + if "py2exe" in sys.modules: # py2exe enabled? + try: + from py2exe.distutils_buildexe import py2exe as _py2exe # py3 + except ImportError: + from py2exe.build_exe import py2exe as _py2exe # py2 + + class cmd_py2exe(_py2exe): + def run(self): + root = get_root() + cfg = get_config_from_root(root) + versions = get_versions() + target_versionfile = cfg.versionfile_source + print("UPDATING %s" % target_versionfile) + write_to_version_file(target_versionfile, versions) + + _py2exe.run(self) + os.unlink(target_versionfile) + with open(cfg.versionfile_source, "w") as f: + LONG = LONG_VERSION_PY[cfg.VCS] + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + + cmds["py2exe"] = cmd_py2exe + + # we override different "sdist" commands for both environments + if "setuptools" in sys.modules: + from setuptools.command.sdist import sdist as _sdist + else: + from distutils.command.sdist import sdist as _sdist + + class cmd_sdist(_sdist): + def run(self): + versions = get_versions() + self._versioneer_generated_versions = versions + # unless we update this, the command will keep using the old + # version + self.distribution.metadata.version = versions["version"] + return _sdist.run(self) + + def make_release_tree(self, base_dir, files): + root = get_root() + cfg = get_config_from_root(root) + _sdist.make_release_tree(self, base_dir, files) + # now locate _version.py in the new base_dir directory + # (remembering that it may be a hardlink) and replace it with an + # updated value + target_versionfile = os.path.join(base_dir, cfg.versionfile_source) + print("UPDATING %s" % target_versionfile) + write_to_version_file( + target_versionfile, self._versioneer_generated_versions + ) + + cmds["sdist"] = cmd_sdist + + return cmds + + +CONFIG_ERROR = """ +setup.cfg is missing the necessary Versioneer configuration. You need +a section like: + + [versioneer] + VCS = git + style = pep440 + versionfile_source = src/myproject/_version.py + versionfile_build = myproject/_version.py + tag_prefix = + parentdir_prefix = myproject- + +You will also need to edit your setup.py to use the results: + + import versioneer + setup(version=versioneer.get_version(), + cmdclass=versioneer.get_cmdclass(), ...) + +Please read the docstring in ./versioneer.py for configuration instructions, +edit setup.cfg, and re-run the installer or 'python versioneer.py setup'. +""" + +SAMPLE_CONFIG = """ +# See the docstring in versioneer.py for instructions. Note that you must +# re-run 'versioneer.py setup' after changing this section, and commit the +# resulting files. + +[versioneer] +#VCS = git +#style = pep440 +#versionfile_source = +#versionfile_build = +#tag_prefix = +#parentdir_prefix = + +""" + +INIT_PY_SNIPPET = """ +from ._version import get_versions +__version__ = get_versions()['version'] +del get_versions +""" + + +def do_setup(): + """Main VCS-independent setup function for installing Versioneer.""" + root = get_root() + try: + cfg = get_config_from_root(root) + except ( + EnvironmentError, + configparser.NoSectionError, + configparser.NoOptionError, + ) as e: + if isinstance(e, (EnvironmentError, configparser.NoSectionError)): + print("Adding sample versioneer config to setup.cfg", file=sys.stderr) + with open(os.path.join(root, "setup.cfg"), "a") as f: + f.write(SAMPLE_CONFIG) + print(CONFIG_ERROR, file=sys.stderr) + return 1 + + print(" creating %s" % cfg.versionfile_source) + with open(cfg.versionfile_source, "w") as f: + LONG = LONG_VERSION_PY[cfg.VCS] + f.write( + LONG + % { + "DOLLAR": "$", + "STYLE": cfg.style, + "TAG_PREFIX": cfg.tag_prefix, + "PARENTDIR_PREFIX": cfg.parentdir_prefix, + "VERSIONFILE_SOURCE": cfg.versionfile_source, + } + ) + + ipy = os.path.join(os.path.dirname(cfg.versionfile_source), "__init__.py") + if os.path.exists(ipy): + try: + with open(ipy, "r") as f: + old = f.read() + except EnvironmentError: + old = "" + if INIT_PY_SNIPPET not in old: + print(" appending to %s" % ipy) + with open(ipy, "a") as f: + f.write(INIT_PY_SNIPPET) + else: + print(" %s unmodified" % ipy) + else: + print(" %s doesn't exist, ok" % ipy) + ipy = None + + # Make sure both the top-level "versioneer.py" and versionfile_source + # (PKG/_version.py, used by runtime code) are in MANIFEST.in, so + # they'll be copied into source distributions. Pip won't be able to + # install the package without this. + manifest_in = os.path.join(root, "MANIFEST.in") + simple_includes = set() + try: + with open(manifest_in, "r") as f: + for line in f: + if line.startswith("include "): + for include in line.split()[1:]: + simple_includes.add(include) + except EnvironmentError: + pass + # That doesn't cover everything MANIFEST.in can do + # (http://docs.python.org/2/distutils/sourcedist.html#commands), so + # it might give some false negatives. Appending redundant 'include' + # lines is safe, though. + if "versioneer.py" not in simple_includes: + print(" appending 'versioneer.py' to MANIFEST.in") + with open(manifest_in, "a") as f: + f.write("include versioneer.py\n") + else: + print(" 'versioneer.py' already in MANIFEST.in") + if cfg.versionfile_source not in simple_includes: + print( + " appending versionfile_source ('%s') to MANIFEST.in" + % cfg.versionfile_source + ) + with open(manifest_in, "a") as f: + f.write("include %s\n" % cfg.versionfile_source) + else: + print(" versionfile_source already in MANIFEST.in") + + # Make VCS-specific changes. For git, this means creating/changing + # .gitattributes to mark _version.py for export-subst keyword + # substitution. + do_vcs_install(manifest_in, cfg.versionfile_source, ipy) + return 0 + + +def scan_setup_py(): + """Validate the contents of setup.py against Versioneer's expectations.""" + found = set() + setters = False + errors = 0 + with open("setup.py", "r") as f: + for line in f.readlines(): + if "import versioneer" in line: + found.add("import") + if "versioneer.get_cmdclass()" in line: + found.add("cmdclass") + if "versioneer.get_version()" in line: + found.add("get_version") + if "versioneer.VCS" in line: + setters = True + if "versioneer.versionfile_source" in line: + setters = True + if len(found) != 3: + print("") + print("Your setup.py appears to be missing some important items") + print("(but I might be wrong). Please make sure it has something") + print("roughly like the following:") + print("") + print(" import versioneer") + print(" setup( version=versioneer.get_version(),") + print(" cmdclass=versioneer.get_cmdclass(), ...)") + print("") + errors += 1 + if setters: + print("You should remove lines like 'versioneer.VCS = ' and") + print("'versioneer.versionfile_source = ' . This configuration") + print("now lives in setup.cfg, and should be removed from setup.py") + print("") + errors += 1 + return errors + + +if __name__ == "__main__": + cmd = sys.argv[1] + if cmd == "setup": + errors = do_setup() + errors += scan_setup_py() + if errors: + sys.exit(1)