From f90738a8915527594d386b1c87a4e9e3de29aeec Mon Sep 17 00:00:00 2001 From: pcamach2 <49655443+pcamach2@users.noreply.github.com> Date: Sat, 23 Apr 2022 18:43:37 -0500 Subject: [PATCH] Removes fastsurfer_bool Removes currently unused fastsurfer_bool variable --- smriprep/utils/misc.py | 11 +++-------- 1 file changed, 3 insertions(+), 8 deletions(-) diff --git a/smriprep/utils/misc.py b/smriprep/utils/misc.py index a4d234e202..e35a15131d 100644 --- a/smriprep/utils/misc.py +++ b/smriprep/utils/misc.py @@ -99,10 +99,7 @@ def fs_isRunning(subjects_dir, subject_id, mtime_tol=86400, logger=None): def check_fastsurfer(subjects_dir, subject_id, logger=None): """ Checks FreeSurfer subjects dir for presence of files in mri/ with names indicating processing with FastSurfer, - and returns a boolean fastsurfer_bool to indicate that FastSurfer is being used instead of Freesurfer. - - For development purposes, this also touches files that are expected outputs of Freesurfer, - but not produced by default in FastSurfer. + this also touches files that are expected outputs of Freesurfer, but not produced by default in FastSurfer. Parameters ---------- @@ -113,7 +110,6 @@ def check_fastsurfer(subjects_dir, subject_id, logger=None): Returns ------- - fastsurfer_bool : Boolean subjects_dir : os.PathLike or None @@ -124,17 +120,16 @@ def check_fastsurfer(subjects_dir, subject_id, logger=None): return subjects_dir subj_dir = Path(subjects_dir) / subject_id if not subj_dir.exists(): - return subjects_dir fastsurferfiles = tuple(subj_dir.glob("mri/*deep*mgz")) if not fastsurferfiles: fastsurfer_bool = False - return fastsurfer_bool, subjects_dir + return subjects_dir else: fastsurfer_bool = True if logger: logger.warn(f'Evidence of FastSurfer processing found in {subj_dir}') noCCseglabel = Path(subj_dir / 'mri/aseg.auto_noCCseg.label_intensities.txt') noCCseglabel.touch(exist_ok=False) - return fastsurfer_bool, subjects_dir + return subjects_dir