From 92f3dc324ab177838d4883ffa8312bdf4840f4a5 Mon Sep 17 00:00:00 2001 From: Philipp Wissmann Date: Wed, 28 Aug 2024 13:50:27 +0200 Subject: [PATCH] Add application configuration Use viper to parse config from a yaml file. Mulitple paths are check for the config file to exist (cwd, userConfigDir, src/openem-ingestor/core) --- openem-ingestor/app.go | 7 +- .../core/.openem-ingestor-config.yaml | 13 ++++ openem-ingestor/core/config.go | 63 +++++++++++++++++ openem-ingestor/core/taskqueue.go | 15 +++-- openem-ingestor/go.mod | 24 ++++++- openem-ingestor/go.sum | 67 +++++++++++++++++-- openem-ingestor/main.go | 15 ++++- 7 files changed, 184 insertions(+), 20 deletions(-) create mode 100644 openem-ingestor/core/.openem-ingestor-config.yaml create mode 100644 openem-ingestor/core/config.go diff --git a/openem-ingestor/app.go b/openem-ingestor/app.go index 80c579f..3607334 100644 --- a/openem-ingestor/app.go +++ b/openem-ingestor/app.go @@ -12,11 +12,12 @@ import ( type App struct { ctx context.Context taskqueue core.TaskQueue + config core.Config } // NewApp creates a new App application struct -func NewApp() *App { - return &App{} +func NewApp(config core.Config) *App { + return &App{config: config, taskqueue: core.TaskQueue{Config: config}} } // Show prompt before closing the app @@ -38,7 +39,7 @@ func (b *App) beforeClose(ctx context.Context) (prevent bool) { func (a *App) startup(ctx context.Context) { a.ctx = ctx a.taskqueue.AppContext = a.ctx - a.taskqueue.Startup(2) + a.taskqueue.Startup() } func (a *App) SelectFolder() { diff --git a/openem-ingestor/core/.openem-ingestor-config.yaml b/openem-ingestor/core/.openem-ingestor-config.yaml new file mode 100644 index 0000000..38c6f8a --- /dev/null +++ b/openem-ingestor/core/.openem-ingestor-config.yaml @@ -0,0 +1,13 @@ +Scicat: + Host: http://openem-scopem.ethz.ch:89/api/v3 + AccessToken: "asdf" +Transfer: + Method: S3 + S3: + Endpoint: scopem-openem.ethz.ch:9000 + Bucket: landingzone + Checksum: true + Globus: + Endpoint: globus.psi.ch +Misc: + ConcurrencyLimit: 2 \ No newline at end of file diff --git a/openem-ingestor/core/config.go b/openem-ingestor/core/config.go new file mode 100644 index 0000000..de70adb --- /dev/null +++ b/openem-ingestor/core/config.go @@ -0,0 +1,63 @@ +package core + +import ( + "fmt" + "os" + + "github.com/spf13/viper" +) + +type Scicat struct { + Host string `string:"Host"` + AccessToken string `string:"AccessToken"` +} + +type S3 struct { + Endpoint string `string:"Endpoint"` + Bucket string `string:"Bucket"` + Checksum bool `bool:"Checksum"` +} + +type Globus struct { + Endpoint string `string:"Endpoint"` +} + +type Transfer struct { + Method string `string:"Method"` + S3 S3 `mapstructure:"S3"` + Globus Globus `mapstructure:"Globus"` +} + +type Misc struct { + ConcurrencyLimit int `int:"ConcurrencyLimit"` +} + +type Config struct { + Scicat Scicat `mapstructure:"Scicat"` + Transfer Transfer `mapstructure:"Transfer"` + Misc Misc `mapstructure:"Misc"` +} + +func GetConfig() (Config, error) { + var config Config + if err := viper.Unmarshal(&config); err != nil { + fmt.Println(err) + return config, err + } + return config, nil +} + +func ReadConfig() error { + viper.SetConfigName(".openem-ingestor-config") // name of config file (without extension) + viper.SetConfigType("yaml") + + userConfigDir, _ := os.UserConfigDir() + viper.AddConfigPath(userConfigDir) + + // these paths are mostly for development + viper.AddConfigPath("./") + viper.AddConfigPath("./core") + + err := viper.ReadInConfig() + return err +} diff --git a/openem-ingestor/core/taskqueue.go b/openem-ingestor/core/taskqueue.go index 40bf18f..bebdccc 100644 --- a/openem-ingestor/core/taskqueue.go +++ b/openem-ingestor/core/taskqueue.go @@ -16,6 +16,7 @@ type TaskQueue struct { inputChannel chan IngestionTask // Requests to upload data are put into this channel resultChannel chan TaskResult // The result of the upload is put into this channel AppContext context.Context + Config Config } type TransferMethods int @@ -48,13 +49,13 @@ type TaskResult struct { Error error } -func (w *TaskQueue) Startup(numWorkers int) { +func (w *TaskQueue) Startup() { w.inputChannel = make(chan IngestionTask) w.resultChannel = make(chan TaskResult) // start multiple go routines/workers that will listen on the input channel - for worker := 1; worker <= numWorkers; worker++ { + for worker := 1; worker <= w.Config.Misc.ConcurrencyLimit; worker++ { go w.startWorker() } @@ -64,13 +65,13 @@ func (w *TaskQueue) CreateTask(folder DatasetFolder) error { task := IngestionTask{ DatasetFolder: folder, - ScicatUrl: "http://scopem-openem.ethz.ch:89/api/v3", - ScicatAccessToken: "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJfaWQiOiI2Njk3N2UxMWFhZTUwOWI4YzRiMjQwZTciLCJ1c2VybmFtZSI6ImluZ2VzdG9yIiwiZW1haWwiOiJzY2ljYXRpbmdlc3RvckB5b3VyLnNpdGUiLCJhdXRoU3RyYXRlZ3kiOiJsb2NhbCIsIl9fdiI6MCwiaWQiOiI2Njk3N2UxMWFhZTUwOWI4YzRiMjQwZTciLCJpYXQiOjE3MjM3MDY3MjYsImV4cCI6MTcyMzc0MjcyNn0.p0nlcM_hXoSJMsom36oPXZbknwKDsydWCyQytFLkLT4", + ScicatUrl: w.Config.Scicat.Host, + ScicatAccessToken: w.Config.Scicat.AccessToken, TransferMethod: TransferS3, TransferOptions: TransferOptions{ - S3_endpoint: "scopem-openem.ethz.ch:9000", - S3_Bucket: "landingzone", - Md5checksum: true, + S3_endpoint: w.Config.Transfer.S3.Endpoint, + S3_Bucket: w.Config.Transfer.S3.Bucket, + Md5checksum: w.Config.Transfer.S3.Checksum, }, } _, found := w.datasetSourceFolders.Load(task.DatasetFolder.Id) diff --git a/openem-ingestor/go.mod b/openem-ingestor/go.mod index f11503c..2f11e26 100644 --- a/openem-ingestor/go.mod +++ b/openem-ingestor/go.mod @@ -5,10 +5,30 @@ go 1.21 toolchain go1.22.1 require ( - github.com/google/uuid v1.3.0 + github.com/google/uuid v1.4.0 + github.com/spf13/viper v1.19.0 github.com/wailsapp/wails/v2 v2.9.1 ) +require ( + github.com/fsnotify/fsnotify v1.7.0 // indirect + github.com/hashicorp/hcl v1.0.0 // indirect + github.com/magiconair/properties v1.8.7 // indirect + github.com/mitchellh/mapstructure v1.5.0 // indirect + github.com/pelletier/go-toml/v2 v2.2.2 // indirect + github.com/sagikazarmark/locafero v0.4.0 // indirect + github.com/sagikazarmark/slog-shim v0.1.0 // indirect + github.com/sourcegraph/conc v0.3.0 // indirect + github.com/spf13/afero v1.11.0 // indirect + github.com/spf13/cast v1.6.0 // indirect + github.com/spf13/pflag v1.0.5 // indirect + github.com/subosito/gotenv v1.6.0 // indirect + go.uber.org/atomic v1.9.0 // indirect + go.uber.org/multierr v1.9.0 // indirect + gopkg.in/ini.v1 v1.67.0 // indirect + gopkg.in/yaml.v3 v3.0.1 // indirect +) + require ( github.com/bep/debounce v1.2.1 // indirect github.com/go-ole/go-ole v1.2.6 // indirect @@ -32,7 +52,7 @@ require ( github.com/wailsapp/go-webview2 v1.0.10 // indirect github.com/wailsapp/mimetype v1.4.1 // indirect golang.org/x/crypto v0.23.0 // indirect - golang.org/x/exp v0.0.0-20230522175609-2e198f4a06a1 // indirect + golang.org/x/exp v0.0.0-20230905200255-921286631fa9 // indirect golang.org/x/net v0.25.0 // indirect golang.org/x/sys v0.20.0 // indirect golang.org/x/text v0.15.0 // indirect diff --git a/openem-ingestor/go.sum b/openem-ingestor/go.sum index 7e8f88d..b80708f 100644 --- a/openem-ingestor/go.sum +++ b/openem-ingestor/go.sum @@ -1,16 +1,29 @@ github.com/bep/debounce v1.2.1 h1:v67fRdBA9UQu2NhLFXrSg0Brw7CexQekrBwDMM8bzeY= github.com/bep/debounce v1.2.1/go.mod h1:H8yggRPQKLUhUoqrJC1bO2xNya7vanpDl7xR3ISbCJ0= github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= -github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c= github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= +github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc h1:U9qPSI2PIWSS1VwoXQT9A3Wy9MM3WgvqSxFWenqJduM= +github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= +github.com/frankban/quicktest v1.14.6 h1:7Xjx+VpznH+oBnejlPUj8oUpdxnVs4f8XU8WnHkI4W8= +github.com/frankban/quicktest v1.14.6/go.mod h1:4ptaffx2x8+WTWXmUCuVU6aPUX1/Mz7zb5vbUoiM6w0= +github.com/fsnotify/fsnotify v1.7.0 h1:8JEhPFa5W2WU7YfeZzPNqzMP6Lwt7L2715Ggo0nosvA= +github.com/fsnotify/fsnotify v1.7.0/go.mod h1:40Bi/Hjc2AVfZrqy+aj+yEI+/bRxZnMJyTJwOpGvigM= github.com/go-ole/go-ole v1.2.6 h1:/Fpf6oFPoeFik9ty7siob0G6Ke8QvQEuVcuChpwXzpY= github.com/go-ole/go-ole v1.2.6/go.mod h1:pprOEPIfldk/42T2oK7lQ4v4JSDwmV0As9GaiUsvbm0= github.com/godbus/dbus/v5 v5.1.0 h1:4KLkAxT3aOY8Li4FRJe/KvhoNFFxo0m6fNuFUO8QJUk= github.com/godbus/dbus/v5 v5.1.0/go.mod h1:xhWf0FNVPg57R7Z0UbKHbJfkEywrmjJnf7w5xrFpKfA= -github.com/google/uuid v1.3.0 h1:t6JiXgmwXMjEs8VusXIJk2BXHsn+wx8BZdTaoZ5fu7I= -github.com/google/uuid v1.3.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo= +github.com/google/go-cmp v0.5.9 h1:O2Tfq5qg4qc4AmwVlvv0oLiVAGB7enBSJ2x2DqQFi38= +github.com/google/go-cmp v0.5.9/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY= +github.com/google/uuid v1.4.0 h1:MtMxsa51/r9yyhkyLsVeVt0B+BGQZzpQiTQ4eHZ8bc4= +github.com/google/uuid v1.4.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo= +github.com/hashicorp/hcl v1.0.0 h1:0Anlzjpi4vEasTeNFn2mLJgTSwt0+6sfsiTG8qcWGx4= +github.com/hashicorp/hcl v1.0.0/go.mod h1:E5yfLk+7swimpb2L/Alb/PJmXilQ/rhwaUYs4T20WEQ= github.com/jchv/go-winloader v0.0.0-20210711035445-715c2860da7e h1:Q3+PugElBCf4PFpxhErSzU3/PY5sFL5Z6rfv4AbGAck= github.com/jchv/go-winloader v0.0.0-20210711035445-715c2860da7e/go.mod h1:alcuEEnZsY1WQsagKhZDsoPCRoOijYqhZvPwLG0kzVs= +github.com/kr/pretty v0.3.1 h1:flRD4NNwYAUpkphVc1HcthR4KEIFJ65n8Mw5qdRn3LE= +github.com/kr/pretty v0.3.1/go.mod h1:hoEshYVHaxMs3cyo3Yncou5ZscifuDolrwPKZanG3xk= +github.com/kr/text v0.2.0 h1:5Nx0Ya0ZqY2ygV366QzturHI13Jq95ApcVaJBhpS+AY= +github.com/kr/text v0.2.0/go.mod h1:eLer722TekiGuMkidMxC/pM04lWEeraHUUmBw8l2grE= github.com/labstack/echo/v4 v4.10.2 h1:n1jAhnq/elIFTHr1EYpiYtyKgx4RW9ccVgkqByZaN2M= github.com/labstack/echo/v4 v4.10.2/go.mod h1:OEyqf2//K1DFdE57vw2DRgWY0M7s65IVQO2FzvI4J5k= github.com/labstack/gommon v0.4.0 h1:y7cvthEAEbU0yHOf4axH8ZG2NH8knB9iNSoTO8dyIk8= @@ -26,6 +39,8 @@ github.com/leaanthony/slicer v1.6.0 h1:1RFP5uiPJvT93TAHi+ipd3NACobkW53yUiBqZheE/ github.com/leaanthony/slicer v1.6.0/go.mod h1:o/Iz29g7LN0GqH3aMjWAe90381nyZlDNquK+mtH2Fj8= github.com/leaanthony/u v1.1.0 h1:2n0d2BwPVXSUq5yhe8lJPHdxevE2qK5G99PMStMZMaI= github.com/leaanthony/u v1.1.0/go.mod h1:9+o6hejoRljvZ3BzdYlVL0JYCwtnAsVuN9pVTQcaRfI= +github.com/magiconair/properties v1.8.7 h1:IeQXZAiQcpL9mgcAe1Nu6cX9LLw6ExEHKjN0VQdvPDY= +github.com/magiconair/properties v1.8.7/go.mod h1:Dhd985XPs7jluiymwWYZ0G4Z61jb3vdS329zhj2hYo0= github.com/matryer/is v1.4.0 h1:sosSmIWwkYITGrxZ25ULNDeKiMNzFSr4V/eqBQP0PeE= github.com/matryer/is v1.4.0/go.mod h1:8I/i5uYgLzgsgEloJE1U6xx5HkBQpAZvepWuujKwMRU= github.com/mattn/go-colorable v0.1.11/go.mod h1:u5H1YNBxpqRaxsYJYSkiCWKzEfiAb1Gb520KVy5xxl4= @@ -35,21 +50,51 @@ github.com/mattn/go-isatty v0.0.14/go.mod h1:7GGIvUiUoEMVVmxf/4nioHXj79iQHKdU27k github.com/mattn/go-isatty v0.0.16/go.mod h1:kYGgaQfpe5nmfYZH+SKPsOc2e4SrIfOl2e/yFXSvRLM= github.com/mattn/go-isatty v0.0.19 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h1:sz/lmYIOXD/1dqDmKjjqLyZ2RngseejIcXlSw2iwfAo= +github.com/stretchr/testify v1.9.0 h1:HtqpIVDClZ4nwg75+f6Lvsy/wHu+3BoSGCbBAcpTsTg= +github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY= +github.com/subosito/gotenv v1.6.0 h1:9NlTDc1FTs4qu0DDq7AEtTPNw6SVm7uBMsUCUjABIf8= +github.com/subosito/gotenv v1.6.0/go.mod h1:Dk4QP5c2W3ibzajGcXpNraDfq2IrhjMIvMSWPKKo0FU= github.com/tkrajina/go-reflector v0.5.6 h1:hKQ0gyocG7vgMD2M3dRlYN6WBBOmdoOzJ6njQSepKdE= github.com/tkrajina/go-reflector v0.5.6/go.mod h1:ECbqLgccecY5kPmPmXg1MrHW585yMcDkVl6IvJe64T4= github.com/valyala/bytebufferpool v1.0.0 h1:GqA5TC/0021Y/b9FG4Oi9Mr3q7XYx6KllzawFIhcdPw= @@ -63,10 +108,14 @@ github.com/wailsapp/mimetype v1.4.1 h1:pQN9ycO7uo4vsUUuPeHEYoUkLVkaRntMnHJxVwYhw github.com/wailsapp/mimetype v1.4.1/go.mod h1:9aV5k31bBOv5z6u+QP8TltzvNGJPmNJD4XlAL3U+j3o= github.com/wailsapp/wails/v2 v2.9.1 h1:irsXnoQrCpeKzKTYZ2SUVlRRyeMR6I0vCO9Q1cvlEdc= github.com/wailsapp/wails/v2 v2.9.1/go.mod h1:7maJV2h+Egl11Ak8QZN/jlGLj2wg05bsQS+ywJPT0gI= +go.uber.org/atomic v1.9.0 h1:ECmE8Bn/WFTYwEW/bpKD3M8VtR/zQVbavAoalC1PYyE= +go.uber.org/atomic v1.9.0/go.mod h1:fEN4uk6kAWBTFdckzkM89CLk9XfWZrxpCo0nPH17wJc= +go.uber.org/multierr v1.9.0 h1:7fIwc/ZtS0q++VgcfqFDxSBZVv/Xo49/SYnDFupUwlI= +go.uber.org/multierr v1.9.0/go.mod h1:X2jQV1h+kxSjClGpnseKVIxpmcjrj7MNnI0bnlfKTVQ= golang.org/x/crypto v0.23.0 h1:dIJU/v2J8Mdglj/8rJ6UUOM3Zc9zLZxVZwwxMooUSAI= golang.org/x/crypto v0.23.0/go.mod h1:CKFgDieR+mRhux2Lsu27y0fO304Db0wZe70UKqHu0v8= -golang.org/x/exp v0.0.0-20230522175609-2e198f4a06a1 h1:k/i9J1pBpvlfR+9QsetwPyERsqu1GIbi967PQMq3Ivc= -golang.org/x/exp v0.0.0-20230522175609-2e198f4a06a1/go.mod h1:V1LtkGg67GoY2N1AnLN78QLrzxkLyJw7RJb1gzOOz9w= +golang.org/x/exp v0.0.0-20230905200255-921286631fa9 h1:GoHiUyI/Tp2nVkLI2mCxVkOjsbSXD66ic0XW0js0R9g= +golang.org/x/exp v0.0.0-20230905200255-921286631fa9/go.mod h1:S2oDrQGGwySpoQPVqRShND87VCbxmc6bL1Yd2oYrm6k= golang.org/x/net v0.0.0-20210505024714-0287a6fb4125/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y= golang.org/x/net v0.25.0 h1:d/OCCoBEUq33pjydKrGQhw7IlUPI2Oylr+8qLx49kac= golang.org/x/net v0.25.0/go.mod h1:JkAGAh7GEvH74S6FOH42FLoXpXbE/aqXSrIQjXgsiwM= @@ -88,6 +137,10 @@ golang.org/x/text v0.15.0 h1:h1V/4gjBv8v9cjcR6+AR5+/cIYK5N/WAgiv4xlsEtAk= golang.org/x/text v0.15.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= +gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo= +gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= +gopkg.in/ini.v1 v1.67.0 h1:Dgnx+6+nfE+IfzjUEISNeydPJh9AXNNsWbGP9KzCsOA= +gopkg.in/ini.v1 v1.67.0/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k= gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA= diff --git a/openem-ingestor/main.go b/openem-ingestor/main.go index ada8720..c1e6943 100644 --- a/openem-ingestor/main.go +++ b/openem-ingestor/main.go @@ -2,7 +2,12 @@ package main import ( "embed" + "fmt" + "log" + "openem-ingestor/core" + + "github.com/spf13/viper" "github.com/wailsapp/wails/v2" "github.com/wailsapp/wails/v2/pkg/options" "github.com/wailsapp/wails/v2/pkg/options/assetserver" @@ -12,8 +17,16 @@ import ( var assets embed.FS func main() { + + if err := core.ReadConfig(); err != nil { + panic(fmt.Errorf("Failed to read config file: %w", err)) + } + log.Printf("Config file used: %s", viper.ConfigFileUsed()) + log.Println(viper.AllSettings()) + + config, _ := core.GetConfig() // Create an instance of the app structure - app := NewApp() + app := NewApp(config) // Create application with options err := wails.Run(&options.App{