rfifind_cmd.h

#ifndef __rfifind_cmd__
#define __rfifind_cmd__
/*****
  command line parser interface -- generated by clig 
  (http://wsd.iitb.fhg.de/~geg/clighome/)

  The command line parser `clig':
  (C) 1995-2004 Harald Kirsch (clig@geggus.net)
*****/

typedef struct s_Cmdline {
  /***** -ncpus: Number of processors to use with OpenMP */
  char ncpusP;
  int ncpus;
  int ncpusC;
  /***** -o: Root of the output file names */
  char outfileP;
  char* outfile;
  int outfileC;
  /***** -filterbank: Raw data in SIGPROC filterbank format */
  char filterbankP;
  /***** -psrfits: Raw data in PSRFITS format */
  char psrfitsP;
  /***** -noweights: Do not apply PSRFITS weights */
  char noweightsP;
  /***** -noscales: Do not apply PSRFITS scales */
  char noscalesP;
  /***** -nooffsets: Do not apply PSRFITS offsets */
  char nooffsetsP;
  /***** -wapp: Raw data in Wideband Arecibo Pulsar Processor (WAPP) format */
  char wappP;
  /***** -window: Window correlator lags with a Hamming window before FFTing */
  char windowP;
  /***** -numwapps: Number of WAPPs used with contiguous frequencies */
  char numwappsP;
  int numwapps;
  int numwappsC;
  /***** -if: A specific IF to use if available (summed IFs is the default) */
  char ifsP;
  int ifs;
  int ifsC;
  /***** -clip: Time-domain sigma to use for clipping (0.0 = no clipping, 6.0 = default */
  char clipP;
  float clip;
  int clipC;
  /***** -noclip: Do not clip the data.  (The default is to _always_ clip!) */
  char noclipP;
  /***** -invert: For rawdata, flip (or invert) the band */
  char invertP;
  /***** -zerodm: Subtract the mean of all channels from each sample (i.e. remove zero DM) */
  char zerodmP;
  /***** -xwin: Draw plots to the screen as well as a PS file */
  char xwinP;
  /***** -nocompute: Just plot and remake the mask */
  char nocomputeP;
  /***** -rfixwin: Show the RFI instances on screen */
  char rfixwinP;
  /***** -rfips: Plot the RFI instances in a PS file */
  char rfipsP;
  /***** -time: Seconds to integrate for stats and FFT calcs (use this or -blocks) */
  char timeP;
  double time;
  int timeC;
  /***** -blocks: Number of blocks (usually 16-1024 samples) to integrate for stats and FFT calcs */
  char blocksP;
  int blocks;
  int blocksC;
  /***** -timesig: The +/-sigma cutoff to reject time-domain chunks */
  char timesigmaP;
  float timesigma;
  int timesigmaC;
  /***** -freqsig: The +/-sigma cutoff to reject freq-domain chunks */
  char freqsigmaP;
  float freqsigma;
  int freqsigmaC;
  /***** -chanfrac: The fraction of bad channels that will mask a full interval */
  char chantrigfracP;
  float chantrigfrac;
  int chantrigfracC;
  /***** -intfrac: The fraction of bad intervals that will mask a full channel */
  char inttrigfracP;
  float inttrigfrac;
  int inttrigfracC;
  /***** -zapchan: Comma separated string (no spaces!) of channels to explicitly mask.  Ranges are specified by min:max[:step] */
  char zapchanstrP;
  char* zapchanstr;
  int zapchanstrC;
  /***** -zapints: Comma separated string (no spaces!) of intervals to explicitly mask.  Ranges are specified by min:max[:step] */
  char zapintsstrP;
  char* zapintsstr;
  int zapintsstrC;
  /***** -mask: File containing masking information to use */
  char maskfileP;
  char* maskfile;
  int maskfileC;
  /***** -ignorechan: Comma separated string (no spaces!) of channels to ignore (or file containing such string).  Ranges are specified by min:max[:step] */
  char ignorechanstrP;
  char* ignorechanstr;
  int ignorechanstrC;
  /***** uninterpreted command line parameters */
  int argc;
  /*@null*/char **argv;
  /***** the whole command line concatenated */
  char *full_cmd_line;
} Cmdline;


extern char *Program;
extern void usage(void);
extern /*@shared*/Cmdline *parseCmdline(int argc, char **argv);

extern void showOptionValues(void);

#endif