Repositories list

• nemabiome

  Public
  Nemabiome website

  HTML

  •2•1•1•0•Updated May 9, 2024May 9, 2024

• RAD_Haemonchus

  Public
  Genome-wide sequencing data to identify regions of the genome of the parasitic nematode Haemonchus contortus showing signatures of selection after benzimidazole treatment

  R

  •0•0•0•0•Updated Jul 10, 2022Jul 10, 2022

• event_detector

  Public
  R

  •0•0•0•0•Updated Oct 30, 2019Oct 30, 2019

• markerDB

  Public
  Build sequence databases for commonly used marker genes 📜

  R

  •

  MIT License

  •4•4•2•0•Updated Jun 27, 2019Jun 27, 2019

• nemabiomeR

  Public
  Helper functions to run the dada2 pipeline on nemabiome data

  R

  •

  Other

  •0•0•0•0•Updated Jun 6, 2019Jun 6, 2019

• firefly

  Public
  16S amplicon data processing pipeline

  Python

  •0•1•0•0•Updated Apr 26, 2019Apr 26, 2019

• DADA2-ITS2-Analysis

  Public
  R

  •1•1•0•0•Updated Nov 30, 2018Nov 30, 2018

• synergy

  Public
  Synergy compute cluster info

  Shell

  •0•4•0•0•Updated Jan 17, 2018Jan 17, 2018

• vmmp

  Public
  Vet Med Microbiome Pipeline

  Python

  •

  MIT License

  •1•3•0•0•Updated Sep 19, 2017Sep 19, 2017

• microbiome_resources

  Public
  Good microbiome resources

  0•0•0•0•Updated Feb 2, 2017Feb 2, 2017

• rbootcamp

  Public
  Materials for the R Bootcamp hosted by UCVM

  HTML

  •

  Creative Commons Attribution 4.0 International

  •4•0•0•0•Updated Jan 4, 2017Jan 4, 2017