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    40 repositories

    • strfPy

      Public
      Python Version of Direct Fit Algorithm for STRF Estimation
      Jupyter Notebook
      •1•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • pecking_analysis

      Public
      Pecking test data analysis
      Python
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • himalaya

      Public
      Multiple-target linear models - CPU/GPU
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•0•0•0•Updated Feb 22, 2025Feb 22, 2025

    • zebra-finch-semantic-category

      Public
      Data and Code for "Categorical and semantic perception of the meaning of call-types in zebra finches" by Elie et al.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • lab-documentation

      Public
      For documentation of lab things: onboarding, network setup, software installation...
      Jupyter Notebook
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • pyoperant

      Public
      python package for operant conditioning
      Python
      •
      GNU General Public License v3.0
      •15•0•0•1•Updated Dec 30, 2024Dec 30, 2024

    • soundsig

      Public
      BioSound and other Sound Signal Processing routines.
      Python
      •
      MIT License
      •9•30•3•3•Updated Dec 20, 2024Dec 20, 2024

    • python-neo

      Public
      Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •251•1•0•0•Updated Dec 12, 2024Dec 12, 2024

    • theunissenlab.github.io

      Public
      Auditory Neuroscience Lab at UC Berkeley
      computational-biologyneuroscienceauditoryanimal-communication
      HTML
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • spikeinterface

      Public
      A Python-based module for creating flexible and robust spike sorting pipelines.
      Python
      •
      MIT License
      •201•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • Kilosort

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      Python
      •
      GNU General Public License v3.0
      •260•0•0•0•Updated Oct 13, 2024Oct 13, 2024

    • crcns

      Public
      Course materials for the CRCNS summer course in computational neuroscience
      Jupyter Notebook
      •2•5•0•0•Updated Aug 21, 2024Aug 21, 2024

    • soundsep2

      Public
      Sound separation gui
      Python
      •
      MIT License
      •0•5•4•0•Updated Aug 8, 2024Aug 8, 2024

    • ReusableImplant

      Public
      Reusable implant for chronic electrophysiological recordings using Cambridge Neurotech Mini-Amp and silicon probes.
      0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • SeedDispenser

      Public
      Feeder for operant task during electrophysiological recordings
      0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • suss-sorter

      Public
      Spike Sorting
      Python
      •
      MIT License
      •1•3•0•0•Updated Jun 5, 2024Jun 5, 2024

    • BabyCriesDiscomfortPain

      Public
      Python, R Code and Data for Corvin et al.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 31, 2024May 31, 2024

    • pykilosort

      Public
      WIP: Python port of Kilosort2
      Python
      •
      GNU General Public License v2.0
      •27•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • phoneme_segmentation

      Public
      Python
      •2•3•1•0•Updated Sep 5, 2023Sep 5, 2023

    • BioSoundTutorial

      Public
      Tutorials to learn how to use BioSound (from soundsig)
      Jupyter Notebook
      •1•24•2•0•Updated May 8, 2023May 8, 2023

    • strflab.github.io

      Public
      HTML
      •0•0•0•0•Updated Mar 11, 2023Mar 11, 2023

    • strfpak.github.io

      Public
      PHP
      •0•0•0•0•Updated Mar 11, 2023Mar 11, 2023

    • zebra-finch-memory-lesions

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • strflab

      Public
      STRFLAB! A newer tool for fitting spatio-temporal receptive fields.
      MATLAB
      •3•8•0•0•Updated Mar 2, 2023Mar 2, 2023

    • URAP-Onboarding

      Public
      The onboarding instructions for URAP. Public repo.
      0•1•0•0•Updated Jan 27, 2023Jan 27, 2023

    • gdrive_python

      Public
      Easy access of Google Drive files via Python functions
      Python
      •
      MIT License
      •0•6•1•0•Updated Jul 9, 2022Jul 9, 2022

    • minian

      Public
      miniscope analysis pipeline with interactive visualizations
      Python
      •
      GNU General Public License v3.0
      •38•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • zebra-finch-memory

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•1•Updated Jun 22, 2022Jun 22, 2022

    • soundsep

      Public
      Sound detection and sorting
      Python
      •
      MIT License
      •0•1•0•2•Updated Jun 22, 2022Jun 22, 2022

    • zeebeez3

      Public
      Code to analyze LFP, spikes and sounds together. Python3 version ported from zeebeez project
      Jupyter Notebook
      •0•1•0•0•Updated Sep 15, 2021Sep 15, 2021