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    90 repositories

    • DIGGER_v2

      Public
      Exploring Isoform-specific interactions
      visualizationdjango-applicationwebtoolprotein-protein-interactionbioinformatics-tool
      Python
      •
      GNU General Public License v3.0
      •3•11•0•2•Updated Jan 25, 2025Jan 25, 2025

    • SPONGE-web-backend

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•6•Updated Jan 24, 2025Jan 24, 2025

    • SPONGE-web-frontend

      Public
      TypeScript
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • platlas

      Public
      A platelet atlas
      R
      •
      GNU General Public License v3.0
      •0•0•27•1•Updated Jan 24, 2025Jan 24, 2025

    • Tangram_Refinement_Strategies

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • PRONE

      Public
      R Package for preprocessing, normalizing, and analyzing proteomics data
      evaluationdata-analysisproteomicsnormalization
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Jan 23, 2025Jan 23, 2025

    • DIGGER

      Public
      Fork for developing Digger 2.0
      Python
      •
      GNU General Public License v3.0
      •3•0•3•0•Updated Jan 23, 2025Jan 23, 2025

    • PPI_prediction_study

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Jan 23, 2025Jan 23, 2025

    • PRONE.Shiny

      Public
      Code of the R Shiny App of the PRONE R Package.
      shinyappsnormalizationproteomics-data-analysis
      R
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Jan 21, 2025Jan 21, 2025

    • drevalpy

      Public
      DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
      bioinformaticsmachinedrug-response-prediction
      Python
      •
      GNU General Public License v3.0
      •1•5•20•6•Updated Jan 15, 2025Jan 15, 2025

    • RPs_MPs

      Public
      R
      •0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

    • Dimmer

      Public
      Java
      •
      GNU General Public License v3.0
      •1•0•0•2•Updated Jan 14, 2025Jan 14, 2025

    • NeEDL

      Public
      C++
      •
      GNU General Public License v3.0
      •1•4•5•3•Updated Jan 13, 2025Jan 13, 2025

    • spongeWebPy

      Public
      Python
      •0•0•0•3•Updated Dec 17, 2024Dec 17, 2024

    • namco

      Public
      R
      •
      GNU General Public License v3.0
      •3•9•23•0•Updated Dec 12, 2024Dec 12, 2024

    • SPONGE-web-R

      Public
      R
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • DysRegNet_package

      Public
      Inferring patient-specific regulatory alterations
      bioinformaticsrna-seqstatisticssystems-biologytranscriptomicslinear-modelsgene-regulatory-network
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Dec 6, 2024Dec 6, 2024

    • easyLiftover

      Public
      This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.
      bioinformaticsbioinformatics-tool
      Python
      •
      GNU General Public License v3.0
      •0•0•2•2•Updated Nov 22, 2024Nov 22, 2024

    • teff-treg-satb1-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • IHEC-AS

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • cyanus

      Public
      A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
      R
      •
      GNU General Public License v3.0
      •2•4•8•0•Updated Oct 23, 2024Oct 23, 2024

    • polyester

      Public
      R
      •1•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • CIRCEST-downstream

      Public
      R
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • DysRegNet_workflow

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • CADDIE-backend

      Public
      Python
      •1•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • BiCoN

      Public
      Network Constrained Biclustering PyPI package
      Python
      •
      GNU General Public License v3.0
      •3•10•0•1•Updated Aug 9, 2024Aug 9, 2024

    • SPONGE

      Public
      Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
      R
      •9•11•3•1•Updated Aug 6, 2024Aug 6, 2024

    • Ex-Breast-Cancer-Survival

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

    • nedrexdb

      Public
      A repository containing the code for building and hosting NeDRexDB
      Python
      •
      GNU General Public License v3.0
      •3•0•0•3•Updated Jul 18, 2024Jul 18, 2024

    • HiTSeekR

      Public
      An R shiny web application for the analysis of various types of high-throughput screening data
      R
      •
      GNU General Public License v3.0
      •3•4•4•0•Updated Jun 9, 2024Jun 9, 2024