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    136 repositories

    • human-protein-pdb

      Public
      Shell
      •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • orthodb

      Public
      The hierarchical catalog of orthologs mapping genomics to functional data
      Dockerfile
      •0•0•0•1•Updated Feb 26, 2025Feb 26, 2025

    • chemharmony

      Public
      integrated chemical-property-values from many source databases.
      data-integration
      Python
      •1•3•3•0•Updated Feb 21, 2025Feb 21, 2025

    • biobricks-okg

      Public
      An open knowledge graph for BioBricks.ai
      data-integrationrml
      Perl
      •
      MIT License
      •0•1•11•1•Updated Feb 20, 2025Feb 20, 2025

    • chemprop-transformer

      Public
      BioSim model with Conditional Variational Autoencoder
      ml-model
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Feb 8, 2025Feb 8, 2025

    • okg.biobricks.ai

      Public
      Documentation for the biobricks open knowledge graph
      HTML
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • cebs

      Public
      Python
      •0•0•1•0•Updated Jan 21, 2025Jan 21, 2025

    • OpenStemDocs

      Public
      A collection of all open access peer reviewed publications.
      Python
      •0•1•7•0•Updated Dec 18, 2024Dec 18, 2024

    • pubchem-annotations-kg

      Public
      transforming the pubchem-annotations repo to an HDT
      Python
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • ecotox

      Public
      Single chemical environmental toxicity data for aquatic life, terrestrial plants and wildlife
      brick
      Python
      •0•1•1•0•Updated Dec 18, 2024Dec 18, 2024

    • cir-reports

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • cosing

      Public
      Dockerfile
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • aopwikirdf-kg

      Public
      Dockerfile
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • pubchem-annotations

      Public
      Python
      •0•1•2•1•Updated Nov 21, 2024Nov 21, 2024

    • SMRT

      Public
      Small Molecule Retention Time Dataset
      Dockerfile
      •
      MIT License
      •2•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • zinc

      Public
      750M purchasable compounds with searchable analogs, 230M purchasable compounds in ready-to-dock, 3D formats
      brick
      Python
      •0•1•1•0•Updated Nov 10, 2024Nov 10, 2024

    • ice

      Public
      Curated in vivo and in vitro test data, in silico toxicity predictions, chemical property data, and reference chemical lists
      brickniceatm
      Shell
      •0•1•0•1•Updated Nov 8, 2024Nov 8, 2024

    • eutoxrisk-temposeq-kg

      Public
      Triple brick for the eutoxrisk asset
      Dockerfile
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • eutoxrisk-temposeq

      Public
      Data from Biostudies EUToxRisk studies
      Python
      •1•0•3•2•Updated Nov 5, 2024Nov 5, 2024

    • RiskDER

      Public
      Chemical Risk Data Evaluation Records
      Python
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • pubchemrdf-kg

      Public
      The PubChem Compound, Substance, BioAssay databases in RDF format.
      brick
      Shell
      •0•1•0•0•Updated Oct 24, 2024Oct 24, 2024

    • structured-sds

      Public
      Shell
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • chemprop-llm

      Public
      Python
      •1•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • openalex

      Public
      OpenAlex is a free index of the world's research ecosystem. It's made by OurResearch with support from Arcadia—a charitable fund of Lisbet Rausing and Peter Baldwin at openalex.org
      brick
      Python
      •0•2•0•0•Updated Oct 10, 2024Oct 10, 2024

    • therapeutic-target-database

      Public
      Shell
      •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • guide-to-pharmacology

      Public
      Shell
      •0•0•1•0•Updated Sep 14, 2024Sep 14, 2024

    • biobricks

      Public
      BioBricks makes loading data from biological datasets and databases easy. Python and R interfaces, data version control, and an API for pulling datasets that have been converted to easy-to-use formats.
      python-package
      Python
      •
      MIT License
      •2•5•15•2•Updated Sep 14, 2024Sep 14, 2024

    • chembl

      Public
      Manually curated database of bioactive molecules with drug-like properties
      bioinformaticsbrick
      Python
      •0•2•4•0•Updated Sep 14, 2024Sep 14, 2024

    • compait

      Public
      Data for an acute inhalation toxicity modeling challenge.
      Dockerfile
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • cpdat

      Public
      49k chemicals categorized by usage or function in 16k consumer products (e.g. shampoo, soap)
      brickepacomputational-toxicologycomptox
      Python
      •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024