Repositories list

• vdi-plugin-rnaseq

  Public
  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• EbrcModelCommon

  Public
  Java

  •

  Apache License 2.0

  •2•1•4•1•Updated Feb 7, 2025Feb 7, 2025

• StaticContent

  Public
  HTML

  •

  Apache License 2.0

  •6•0•0•4•Updated Feb 7, 2025Feb 7, 2025

• web-monorepo

  Public
  A monorepo that contains all frontend code for VEuPathDB websites

  TypeScript

  •

  Apache License 2.0

  •0•2•197•25•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-biom

  Public
  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-genelist

  Public
  Python

  •

  Apache License 2.0

  •0•0•2•0•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-example

  Public template
  VDI handler plugin example repository.

  vdi

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-bigwig

  Public
  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-isasimple

  Public
  Perl

  •

  Apache License 2.0

  •0•0•1•0•Updated Feb 7, 2025Feb 7, 2025

• vdi-docker-plugin-base

  Public
  Docker image for VDI handler plugins.

  vdi

  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• ApiCommonWorkflow

  Public
  Perl

  •

  Apache License 2.0

  •1•0•0•5•Updated Feb 7, 2025Feb 7, 2025

• ApidbSchema

  Public
  SQL and scripts to install the ApiDB schema

  PLSQL

  •

  Apache License 2.0

  •0•0•0•5•Updated Feb 7, 2025Feb 7, 2025

• array-probes-nextflow

  Public
  Map Expression and Genomic (chipchip/cgh) array probes to a genome

  Apache License 2.0

  •0•0•0•2•Updated Feb 7, 2025Feb 7, 2025

• vdi-plugin-handler-server

  Public
  VDI Service Plugin Handler Server

  vdi

  Kotlin

  •

  Apache License 2.0

  •0•0•5•1•Updated Feb 7, 2025Feb 7, 2025

• ApiCommonModel

  Public
  Perl

  •

  Apache License 2.0

  •0•1•1•9•Updated Feb 7, 2025Feb 7, 2025

• plot.data

  Public
  R

  •0•1•56•0•Updated Feb 7, 2025Feb 7, 2025

• ApiCommonWebsite

  Public
  Perl

  •

  Apache License 2.0

  •1•3•0•2•Updated Feb 7, 2025Feb 7, 2025

• OrthoMCLWebsite

  Public
  Apache License 2.0

  •0•0•0•1•Updated Feb 7, 2025Feb 7, 2025

• ClinEpiWebsite

  Public
  CSS

  •

  Apache License 2.0

  •0•2•3•1•Updated Feb 7, 2025Feb 7, 2025

• MicrobiomeWebsite

  Public
  R

  •

  Apache License 2.0

  •0•2•2•2•Updated Feb 7, 2025Feb 7, 2025

• ngs-samples-nextflow

  Public
  Fetch ngs samples from SRA if needed and/or prepare samplesheet for further processing

  Nextflow

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• bulk-rnaseq-nextflow

  Public
  Bulk RNASeq Workflow

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• ApiCommonWebService

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Feb 6, 2025Feb 6, 2025

• websiteconf

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• EbrcWebsiteCommon

  Public
  Perl

  •

  Apache License 2.0

  •3•3•8•4•Updated Feb 6, 2025Feb 6, 2025

• veupathUtils

  Public
  A collection of general purpose R helper functions for use in the VEuPathDB project.

  R

  •

  Apache License 2.0

  •1•0•12•0•Updated Feb 6, 2025Feb 6, 2025

• WDK

  Public
  Java

  •

  Apache License 2.0

  •4•1•13•6•Updated Feb 5, 2025Feb 5, 2025

• service-jbrowse2-config

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• GusAppFramework

  Public
  Perl

  •

  Apache License 2.0

  •2•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• vdi-service

  Public
  vdi

  Kotlin

  •

  Apache License 2.0

  •0•0•37•1•Updated Feb 5, 2025Feb 5, 2025