Repositories list

• readbiomed-semantics

  Public
  Apache License 2.0

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• brateval

  Public
  This tool performs pairwise comparison of brat annotation sets done on the same set of documents.

  Java

  •

  Other

  •2•2•1•1•Updated Jan 5, 2024Jan 5, 2024

• read-biomed.github.io

  Public
  HTML

  •0•0•0•0•Updated Sep 26, 2023Sep 26, 2023

• readbiomed-lbd

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •1•4•1•0•Updated Aug 3, 2023Aug 3, 2023

• readbiomed-uima-spark

  Public
  A project that enable the integration of UIMA pipeline in spark

  Java

  •0•0•1•2•Updated Apr 21, 2023Apr 21, 2023

• readbiomed-ncbi-pathogen-dataset-generation

  Public
  Java

  •

  Other

  •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• readbiomed-pathogen-annotator

  Public
  Java

  •

  Other

  •1•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• readbiomed-pathogens-dataset

  Public
  Other

  •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• clinical-trial-medline-link

  Public
  Extract links to clinicaltrials.gov from MEDLINE

  Python

  •0•0•0•0•Updated Aug 4, 2022Aug 4, 2022

• readbiomed-uima-python-interface

  Public
  Allow calling UIMA analisys engines from Python

  Java

  •0•0•0•0•Updated Apr 11, 2022Apr 11, 2022

• readbiomed-metamaplite-uima

  Public
  Wrapper of MetaMap Lite to work as an UIMA AnalysisEngine

  Java

  •0•0•0•0•Updated Apr 11, 2022Apr 11, 2022

• readbiomed-conceptmapper

  Public
  Java

  •0•0•0•0•Updated Mar 30, 2022Mar 30, 2022

• readbiomed-litcoin

  Public
  Java

  •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• readbiomed-facility-annotator

  Public
  Python

  •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

• MTIMLExtension

  Public
  Java

  •

  Other

  •1•1•0•0•Updated Dec 23, 2021Dec 23, 2021