From 7a938786ecf5634eb4d05db79eb9fe18195add3b Mon Sep 17 00:00:00 2001 From: pgleeson Date: Thu, 9 Jan 2025 15:03:42 +0000 Subject: [PATCH 1/9] Initial cell definition for worm2d cell model --- examples/parametersweep/Canonical_C.json | 2 +- examples/parametersweep/Canonical_C.net.nml | 4 +- examples/parametersweep/Canonical_X.json | 2 +- examples/parametersweep/GenerateExamples.py | 45 ++++++++++--- .../GenericNeuronCellX.cell.nml | 25 +------ .../IClamp_GenericMuscleCell.json | 2 +- .../IClamp_GenericMuscleCell.net.nml | 4 +- .../IClamp_GenericNeuronCell.json | 2 +- .../IClamp_GenericNeuronCell.net.nml | 4 +- examples/parametersweep/SimCanonical_C.json | 2 +- examples/parametersweep/SimCanonical_X.json | 2 +- .../Sim_IClamp_GenericMuscleCell.json | 2 +- .../Sim_IClamp_GenericNeuronCell.json | 2 +- examples/parametersweep/cell_X.xml | 66 +++++++++++++++---- examples/parametersweep/regenerateAndTest.sh | 5 +- 15 files changed, 106 insertions(+), 63 deletions(-) diff --git a/examples/parametersweep/Canonical_C.json b/examples/parametersweep/Canonical_C.json index a1f8be8b..ebed0f7d 100644 --- a/examples/parametersweep/Canonical_C.json +++ b/examples/parametersweep/Canonical_C.json @@ -1,6 +1,6 @@ { "Canonical_C": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "parameters": { "stim_duration": "2000ms", "stim_amp": "3.5pA", diff --git a/examples/parametersweep/Canonical_C.net.nml b/examples/parametersweep/Canonical_C.net.nml index 81179aa1..4270ee53 100644 --- a/examples/parametersweep/Canonical_C.net.nml +++ b/examples/parametersweep/Canonical_C.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.5.9 + + Generated by NeuroMLlite v0.6.1 Generated network: Canonical_C Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/Canonical_X.json b/examples/parametersweep/Canonical_X.json index 5896839e..537b9bc6 100644 --- a/examples/parametersweep/Canonical_X.json +++ b/examples/parametersweep/Canonical_X.json @@ -1,6 +1,6 @@ { "Canonical_X": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "parameters": { "stim_duration": "250ms", "stim_amp": "1pA", diff --git a/examples/parametersweep/GenerateExamples.py b/examples/parametersweep/GenerateExamples.py index a7787fc6..e79f6512 100644 --- a/examples/parametersweep/GenerateExamples.py +++ b/examples/parametersweep/GenerateExamples.py @@ -17,7 +17,11 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): reference = "%s_%s" % (config, cell) cell_id = "%s" % cell - cell_nmll = Cell(id=cell_id, neuroml2_source_file="%s.cell.nml" % (cell)) + + if cell_id=='GenericNeuronCellX': + cell_nmll = Cell(id=cell_id, lems_source_file='cell_X.xml') + else: + cell_nmll = Cell(id=cell_id, neuroml2_source_file="%s.cell.nml" % (cell)) ################################################################################ ### Add some inputs @@ -27,15 +31,26 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): parameters = {} parameters["stim_amp"] = "350pA" - input_source = InputSource( - id="iclamp_0", - neuroml2_input="PulseGenerator", - parameters={ - "amplitude": "stim_amp", - "delay": "500ms", - "duration": "2000ms", - }, - ) + if cell_id is not 'GenericNeuronCellX': + input_source = InputSource( + id="iclamp_0", + neuroml2_input="PulseGenerator", + parameters={ + "amplitude": "stim_amp", + "delay": "500ms", + "duration": "2000ms", + }, + ) + else: + input_source = InputSource( + id="iclamp_0", + neuroml2_input="PulseGeneratorDL", + parameters={ + "amplitude": "1", + "delay": "2000ms", + "duration": "6000ms", + }, + ) else: if not parameters: @@ -65,14 +80,24 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): input_for_default_population=input_source, ) + if cell_id=='GenericNeuronCellX': + sim.record_traces={} + sim.record_variables={"V": {"all": "*"}, "state": {"all": "*"}, "output": {"all": "*"}} + return sim, net if __name__ == "__main__": + if "-all" in sys.argv: for cell in colors: generate(cell, 3000, config="IClamp", parameters={"stim_amp": "4pA"}) + elif "-x" in sys.argv: + + sim, net = generate("GenericNeuronCellX", 10000, config="IClamp", parameters={"stim_amp": "1pA"}) + check_to_generate_or_run(sys.argv, sim) + else: # sim, net = generate('cADpyr229_L23_PC_c292d67a2e_0_0', 3000, config="IClamp") sim, net = generate( diff --git a/examples/parametersweep/GenericNeuronCellX.cell.nml b/examples/parametersweep/GenericNeuronCellX.cell.nml index ffcf7f5d..8159c8e6 100644 --- a/examples/parametersweep/GenericNeuronCellX.cell.nml +++ b/examples/parametersweep/GenericNeuronCellX.cell.nml @@ -1,27 +1,6 @@ - -... - - + + - - - - - - - - - - - - - - - - - - - diff --git a/examples/parametersweep/IClamp_GenericMuscleCell.json b/examples/parametersweep/IClamp_GenericMuscleCell.json index dbcd8bb2..2af36940 100644 --- a/examples/parametersweep/IClamp_GenericMuscleCell.json +++ b/examples/parametersweep/IClamp_GenericMuscleCell.json @@ -1,6 +1,6 @@ { "IClamp_GenericMuscleCell": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "notes": "A network model: IClamp_GenericMuscleCell", "parameters": { "stim_amp": "4pA" diff --git a/examples/parametersweep/IClamp_GenericMuscleCell.net.nml b/examples/parametersweep/IClamp_GenericMuscleCell.net.nml index 46bdcf05..83935fad 100644 --- a/examples/parametersweep/IClamp_GenericMuscleCell.net.nml +++ b/examples/parametersweep/IClamp_GenericMuscleCell.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.5.9 + + Generated by NeuroMLlite v0.6.1 Generated network: IClamp_GenericMuscleCell Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/IClamp_GenericNeuronCell.json b/examples/parametersweep/IClamp_GenericNeuronCell.json index 88183997..879a3eb4 100644 --- a/examples/parametersweep/IClamp_GenericNeuronCell.json +++ b/examples/parametersweep/IClamp_GenericNeuronCell.json @@ -1,6 +1,6 @@ { "IClamp_GenericNeuronCell": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "notes": "A network model: IClamp_GenericNeuronCell", "parameters": { "stim_amp": "4pA" diff --git a/examples/parametersweep/IClamp_GenericNeuronCell.net.nml b/examples/parametersweep/IClamp_GenericNeuronCell.net.nml index ac41d297..7c985ecf 100644 --- a/examples/parametersweep/IClamp_GenericNeuronCell.net.nml +++ b/examples/parametersweep/IClamp_GenericNeuronCell.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.5.9 + + Generated by NeuroMLlite v0.6.1 Generated network: IClamp_GenericNeuronCell Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/SimCanonical_C.json b/examples/parametersweep/SimCanonical_C.json index 3e96661f..64090962 100644 --- a/examples/parametersweep/SimCanonical_C.json +++ b/examples/parametersweep/SimCanonical_C.json @@ -1,6 +1,6 @@ { "SimCanonical_C": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "network": "Canonical_C.json", "duration": 3000.0, "dt": 0.1, diff --git a/examples/parametersweep/SimCanonical_X.json b/examples/parametersweep/SimCanonical_X.json index b182dbe5..d5adf60a 100644 --- a/examples/parametersweep/SimCanonical_X.json +++ b/examples/parametersweep/SimCanonical_X.json @@ -1,6 +1,6 @@ { "SimCanonical_X": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "network": "Canonical_X.json", "duration": 3000.0, "dt": 0.1, diff --git a/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json b/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json index 136c7955..3e5b294f 100644 --- a/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json +++ b/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json @@ -1,6 +1,6 @@ { "Sim_IClamp_GenericMuscleCell": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "network": "IClamp_GenericMuscleCell.json", "duration": 3000.0, "dt": 0.025, diff --git a/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json b/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json index 47a3ee6b..05cf860d 100644 --- a/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json +++ b/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json @@ -1,6 +1,6 @@ { "Sim_IClamp_GenericNeuronCell": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.1", "network": "IClamp_GenericNeuronCell.json", "duration": 3000.0, "dt": 0.025, diff --git a/examples/parametersweep/cell_X.xml b/examples/parametersweep/cell_X.xml index 26a04b03..5b9d45dc 100644 --- a/examples/parametersweep/cell_X.xml +++ b/examples/parametersweep/cell_X.xml @@ -1,18 +1,58 @@ - + - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - + + + + + + + - diff --git a/examples/parametersweep/regenerateAndTest.sh b/examples/parametersweep/regenerateAndTest.sh index d72819d1..43f61c11 100755 --- a/examples/parametersweep/regenerateAndTest.sh +++ b/examples/parametersweep/regenerateAndTest.sh @@ -1,10 +1,9 @@ -set -e +set -ex python GenerateExamples.py -all python GenerateExamples.py -jnml +python GenerateExamples.py -x -jnml python CanonicalCircuit.py python CanonicalCircuit.py -jnml -python CanonicalCircuit.py -x -python CanonicalCircuit.py -x -jnml From 284d7356e4236340a2c1517343e295b924272f47 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Thu, 9 Jan 2025 15:25:21 +0000 Subject: [PATCH 2/9] Just ruff format --- c302/backers.py | 4 ++-- c302/c302_TapWithdrawal.py | 4 ++-- c302/c302_info.py | 12 +++++----- c302/c302_utils.py | 48 +++++++++++++++++++------------------- c302/gen_graph.py | 1 + c302/parameters_A.py | 34 +++++++++++++-------------- c302/parameters_B.py | 36 ++++++++++++++-------------- c302/parameters_BC1.py | 12 +++++----- c302/parameters_C.py | 16 ++++++------- c302/parameters_C0.py | 14 +++++------ c302/parameters_C1.py | 14 +++++------ c302/parameters_C2.py | 14 +++++------ c302/parameters_D.py | 26 ++++++++++----------- c302/parameters_D1.py | 20 ++++++++-------- c302/parameters_X.py | 14 +++++------ 15 files changed, 135 insertions(+), 134 deletions(-) diff --git a/c302/backers.py b/c302/backers.py index 1e6676e2..1d4b611a 100644 --- a/c302/backers.py +++ b/c302/backers.py @@ -1,7 +1,7 @@ """ - This method reads a generated list of cells vs. names as assigned by OpenWorm backers +This method reads a generated list of cells vs. names as assigned by OpenWorm backers - This information will eventually be moved to owmeta/elsewhere... +This information will eventually be moved to owmeta/elsewhere... """ import os diff --git a/c302/c302_TapWithdrawal.py b/c302/c302_TapWithdrawal.py index aeb3ccff..ee508ade 100644 --- a/c302/c302_TapWithdrawal.py +++ b/c302/c302_TapWithdrawal.py @@ -1,7 +1,7 @@ """ - Tap-Withdrawal circuit still under development - it does not produce the correct behavior! - +Tap-Withdrawal circuit still under development - it does not produce the correct behavior! + """ import c302 diff --git a/c302/c302_info.py b/c302/c302_info.py index 86f5a075..70eb9367 100644 --- a/c302/c302_info.py +++ b/c302/c302_info.py @@ -27,13 +27,13 @@ def generate_c302_info(nml_doc, verbose=False): for c in cp.continuous_connection_instance_ws: if "inh" in c.post_component: - cc_inh_conns[cp.presynaptic_population][ - cp.postsynaptic_population - ] = float(c.weight) + cc_inh_conns[cp.presynaptic_population][cp.postsynaptic_population] = ( + float(c.weight) + ) else: - cc_exc_conns[cp.presynaptic_population][ - cp.postsynaptic_population - ] = float(c.weight) + cc_exc_conns[cp.presynaptic_population][cp.postsynaptic_population] = ( + float(c.weight) + ) gj_conns = {} for ep in net.electrical_projections: diff --git a/c302/c302_utils.py b/c302/c302_utils.py index bdc9a4db..29d6d2a0 100644 --- a/c302/c302_utils.py +++ b/c302/c302_utils.py @@ -483,13 +483,13 @@ def generate_conn_matrix( for c in cp.continuous_connection_instance_ws: if "inh" in c.post_component: - cc_inh_conns[cp.presynaptic_population][ - cp.postsynaptic_population - ] = float(c.weight) + cc_inh_conns[cp.presynaptic_population][cp.postsynaptic_population] = ( + float(c.weight) + ) else: - cc_exc_conns[cp.presynaptic_population][ - cp.postsynaptic_population - ] = float(c.weight) + cc_exc_conns[cp.presynaptic_population][cp.postsynaptic_population] = ( + float(c.weight) + ) gj_conns = {} for ep in net.electrical_projections: @@ -556,13 +556,13 @@ def generate_conn_matrix( "Exc Conn %s -> %s: %s" % (pre, post, cc_exc_conns[pre][post]), verbose ) if post in all_neurons: - data_exc_n[ - all_neurons.index(pre), all_neurons.index(post) - ] = cc_exc_conns[pre][post] + data_exc_n[all_neurons.index(pre), all_neurons.index(post)] = ( + cc_exc_conns[pre][post] + ) else: - data_exc_m[ - all_neurons.index(pre), all_muscles.index(post) - ] = cc_exc_conns[pre][post] + data_exc_m[all_neurons.index(pre), all_muscles.index(post)] = ( + cc_exc_conns[pre][post] + ) if pre in all_muscles: raise Exception("Unexpected...") @@ -572,13 +572,13 @@ def generate_conn_matrix( "Inh Conn %s -> %s: %s" % (pre, post, cc_inh_conns[pre][post]), verbose ) if post in all_neurons: - data_inh_n[ - all_neurons.index(pre), all_neurons.index(post) - ] = cc_inh_conns[pre][post] + data_inh_n[all_neurons.index(pre), all_neurons.index(post)] = ( + cc_inh_conns[pre][post] + ) else: - data_inh_m[ - all_neurons.index(pre), all_muscles.index(post) - ] = cc_inh_conns[pre][post] + data_inh_m[all_neurons.index(pre), all_muscles.index(post)] = ( + cc_inh_conns[pre][post] + ) if pre in all_muscles: raise Exception("Unexpected...") @@ -662,13 +662,13 @@ def generate_conn_matrix( and post in all_neurons ): if pre in all_neurons: - data_n_m[ - all_neurons.index(pre), all_muscles.index(post) - ] = gj_conns[pre][post] + data_n_m[all_neurons.index(pre), all_muscles.index(post)] = ( + gj_conns[pre][post] + ) else: - data_n_m[ - all_muscles.index(pre), all_neurons.index(post) - ] = gj_conns[pre][post] + data_n_m[all_muscles.index(pre), all_neurons.index(post)] = ( + gj_conns[pre][post] + ) neuron_muscle = True elif pre in all_muscles and post in all_muscles: muscle_muscle = True diff --git a/c302/gen_graph.py b/c302/gen_graph.py index 76be60db..05b57cf8 100644 --- a/c302/gen_graph.py +++ b/c302/gen_graph.py @@ -4,6 +4,7 @@ Originally developed by David Lung: https://github.com/lungd/nml_to_graph """ + import os import sys import xml.etree.ElementTree as ET diff --git a/c302/parameters_A.py b/c302/parameters_A.py index 221132dd..94c71659 100644 --- a/c302/parameters_A.py +++ b/c302/parameters_A.py @@ -1,22 +1,22 @@ """ - Parameters A: - Cells: Simple integrate and fire cells - Chem Synapses: Event based, ohmic; one rise & one decay constant - Gap junctions: NOT REAL GJs: using event based synapses, generally set to zero conductance - - ASSESSMENT: - Not very useful in longer term; tendency for cells to over excite; difficult to tune networks - - - We are very aware that: - - C elegans neurons do NOT behave like Integrate & Fire neurons - Their synapses are NOT like double exponential, conductance based synapses - Electrical synapses are very different from event triggered, conductance based synapses - - The values below are a FIRST APPROXIMATION of neurons for use in a network to - investigate the synaptic connectivity of C elegans +Parameters A: + Cells: Simple integrate and fire cells + Chem Synapses: Event based, ohmic; one rise & one decay constant + Gap junctions: NOT REAL GJs: using event based synapses, generally set to zero conductance + +ASSESSMENT: + Not very useful in longer term; tendency for cells to over excite; difficult to tune networks + + +We are very aware that: + + C elegans neurons do NOT behave like Integrate & Fire neurons + Their synapses are NOT like double exponential, conductance based synapses + Electrical synapses are very different from event triggered, conductance based synapses + +The values below are a FIRST APPROXIMATION of neurons for use in a network to +investigate the synaptic connectivity of C elegans """ diff --git a/c302/parameters_B.py b/c302/parameters_B.py index a5515323..c657b7df 100644 --- a/c302/parameters_B.py +++ b/c302/parameters_B.py @@ -1,23 +1,23 @@ """ - Parameters B: - Cells: Simple integrate and fire cells, custom component type, with an "activity" variable - Chem Synapses: Event based, ohmic; one rise & one decay constant - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - Not very useful in longer term; same criticisms as parameters A - - - We are very aware that: - - C elegans neurons do NOT behave like Integrate & Fire neurons - Their synapses are NOT like double exponential, conductance based synapses - Electrical synapses are very different from event triggered, conductance based synapses - - The values below are a FIRST APPROXIMATION of neurons for use in a network to - investigate the synaptic connectivity of C elegans - +Parameters B: + Cells: Simple integrate and fire cells, custom component type, with an "activity" variable + Chem Synapses: Event based, ohmic; one rise & one decay constant + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + Not very useful in longer term; same criticisms as parameters A + + +We are very aware that: + + C elegans neurons do NOT behave like Integrate & Fire neurons + Their synapses are NOT like double exponential, conductance based synapses + Electrical synapses are very different from event triggered, conductance based synapses + +The values below are a FIRST APPROXIMATION of neurons for use in a network to +investigate the synaptic connectivity of C elegans + """ diff --git a/c302/parameters_BC1.py b/c302/parameters_BC1.py index 0652834f..2295afad 100644 --- a/c302/parameters_BC1.py +++ b/c302/parameters_BC1.py @@ -1,12 +1,12 @@ """ - Parameters BC1: - Cells: Simple integrate and fire cells, custom component type, with an "activity" variable (same as B) - Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) (same as C1) - Gap junctions: Electrical connection; current linerly depends on difference in voltages +Parameters BC1: + Cells: Simple integrate and fire cells, custom component type, with an "activity" variable (same as B) + Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) (same as C1) + Gap junctions: Electrical connection; current linerly depends on difference in voltages - ASSESSMENT: - Probably not very useful in longer term; same criticisms as parameters A; see C0 +ASSESSMENT: + Probably not very useful in longer term; same criticisms as parameters A; see C0 """ diff --git a/c302/parameters_C.py b/c302/parameters_C.py index 5caf2576..5cb65634 100644 --- a/c302/parameters_C.py +++ b/c302/parameters_C.py @@ -1,13 +1,13 @@ """ - Parameters C: - Cells: Single compartment, conductance based cell models with HH like ion channels - Chem Synapses: Event based, ohmic; one rise & one decay constant - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - May be possible to use this to generate oscilliatory behaviour, but use of event based synapses normally requires - spiking in cells, so core neurons will have to have clear spikes. +Parameters C: + Cells: Single compartment, conductance based cell models with HH like ion channels + Chem Synapses: Event based, ohmic; one rise & one decay constant + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + May be possible to use this to generate oscilliatory behaviour, but use of event based synapses normally requires + spiking in cells, so core neurons will have to have clear spikes. """ diff --git a/c302/parameters_C0.py b/c302/parameters_C0.py index 97ee0090..8d6ea1d2 100644 --- a/c302/parameters_C0.py +++ b/c302/parameters_C0.py @@ -1,12 +1,12 @@ """ - Parameters C0: - Cells: Simplified conductance based cell model (Morris Lecar like); No fast K channel. No inactivation on Ca channel. No [Ca2+] dependence - Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) (same as C1) - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - A good prospect for a simple neuronal model with analog synapses => can have non spiking neurons +Parameters C0: + Cells: Simplified conductance based cell model (Morris Lecar like); No fast K channel. No inactivation on Ca channel. No [Ca2+] dependence + Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) (same as C1) + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + A good prospect for a simple neuronal model with analog synapses => can have non spiking neurons """ diff --git a/c302/parameters_C1.py b/c302/parameters_C1.py index a084de44..fac01f56 100644 --- a/c302/parameters_C1.py +++ b/c302/parameters_C1.py @@ -1,12 +1,12 @@ """ - Parameters C1: - Cells: Single compartment, conductance based cell models with HH like ion channels - Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - A good prospect, but cell model could be simpler. See C0 +Parameters C1: + Cells: Single compartment, conductance based cell models with HH like ion channels + Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + A good prospect, but cell model could be simpler. See C0 """ diff --git a/c302/parameters_C2.py b/c302/parameters_C2.py index 527e3f23..17780d0e 100644 --- a/c302/parameters_C2.py +++ b/c302/parameters_C2.py @@ -1,12 +1,12 @@ """ - Parameters C2 for c302 still under developemnt!! - - - C2 adds analogue synapses... Might be merged into C or bumped up to D - - Subject to change without notice!! - +Parameters C2 for c302 still under developemnt!! + + +C2 adds analogue synapses... Might be merged into C or bumped up to D + +Subject to change without notice!! + """ from neuroml import Cell, PulseGenerator, FixedFactorConcentrationModel diff --git a/c302/parameters_D.py b/c302/parameters_D.py index 9f35396b..bc46f45d 100644 --- a/c302/parameters_D.py +++ b/c302/parameters_D.py @@ -1,18 +1,18 @@ """ - Parameters D: - Cells: Multicompartmental, conductance based cell models with HH like ion channels - Chem Synapses: Event based, ohmic; one rise & one decay constant - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - As with C, the use of event based synapses normally requires spiking in cells, so core neurons will - have to have clear spikes. - Also: either the cells have i) low internal resistance (cytoplasmic resistivity) & membrane potential changes rapidly propagate - through cell or ii) high internal resistance and changes are concentrated around the soma. For i) this allows all synapses on - cell (e.g. distant dendrites) to transmit if cell fires/depolarises, but it means bigger cells have much higher imput resistance, - and so take much more syn input to respond. - Note issue https://github.com/openworm/CElegansNeuroML/issues/71 regarding status of this +Parameters D: + Cells: Multicompartmental, conductance based cell models with HH like ion channels + Chem Synapses: Event based, ohmic; one rise & one decay constant + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + As with C, the use of event based synapses normally requires spiking in cells, so core neurons will + have to have clear spikes. + Also: either the cells have i) low internal resistance (cytoplasmic resistivity) & membrane potential changes rapidly propagate + through cell or ii) high internal resistance and changes are concentrated around the soma. For i) this allows all synapses on + cell (e.g. distant dendrites) to transmit if cell fires/depolarises, but it means bigger cells have much higher imput resistance, + and so take much more syn input to respond. + Note issue https://github.com/openworm/CElegansNeuroML/issues/71 regarding status of this """ diff --git a/c302/parameters_D1.py b/c302/parameters_D1.py index 8b2d1856..208c5829 100644 --- a/c302/parameters_D1.py +++ b/c302/parameters_D1.py @@ -1,15 +1,15 @@ """ - Parameters D: - Cells: Multicompartmental, conductance based cell models with HH like ion channels - Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - May be the right target for the "full scale" model in the medium term... - Similar issues to parameters D - Note issue https://github.com/openworm/CElegansNeuroML/issues/71 regarding status of this - +Parameters D: + Cells: Multicompartmental, conductance based cell models with HH like ion channels + Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + May be the right target for the "full scale" model in the medium term... + Similar issues to parameters D + Note issue https://github.com/openworm/CElegansNeuroML/issues/71 regarding status of this + """ diff --git a/c302/parameters_X.py b/c302/parameters_X.py index c823a8db..cc004261 100644 --- a/c302/parameters_X.py +++ b/c302/parameters_X.py @@ -1,12 +1,12 @@ """ - Parameters X: - Cells: Single compartment, conductance based, passive cell - Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) - Gap junctions: Electrical connection; current linerly depends on difference in voltages - - ASSESSMENT: - TBC... +Parameters X: + Cells: Single compartment, conductance based, passive cell + Chem Synapses: Analogue/graded synapses; continuous transmission (voltage dependent) + Gap junctions: Electrical connection; current linerly depends on difference in voltages + +ASSESSMENT: + TBC... """ From c85301be7fe3ff6f1144557a3d1f51e5af34a160 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Thu, 9 Jan 2025 15:39:53 +0000 Subject: [PATCH 3/9] Some more ruff fixes --- c302/ConnectomeReader.py | 8 ++++---- c302/Cook2019DataReader.py | 3 --- c302/NeuroML2/printNML2Info.py | 1 - c302/NeuroMLUtilities.py | 4 ---- c302/VarshneyDataReader.py | 2 +- c302/W_SpreadsheetDataReader.py | 1 - c302/WhiteDataReader.py | 1 - c302/WormNeuroAtlasReader.py | 5 ++--- c302/analyse.py | 1 - c302/c302_IClampMuscle.py | 1 - c302/c302_TargetMuscle.py | 1 - c302/c302_info.py | 20 +++++++------------- c302/c302_utils.py | 19 ++++++++----------- c302/parameters_C1.py | 2 +- c302/parameters_D.py | 3 --- c302/parameters_D1.py | 15 --------------- c302/parameters_X.py | 1 - examples/parametersweep/CanonicalCircuit.py | 1 - examples/parametersweep/Generate.py | 1 - examples/parametersweep/Sweep.py | 8 ++++---- 20 files changed, 27 insertions(+), 71 deletions(-) diff --git a/c302/ConnectomeReader.py b/c302/ConnectomeReader.py index 9f059329..3e8e39b4 100644 --- a/c302/ConnectomeReader.py +++ b/c302/ConnectomeReader.py @@ -507,7 +507,7 @@ def check_neurons(cells): not_in_preferred = [] missing_preferred = [n for n in PREFERRED_NEURON_NAMES] for c in cells: - if not c in PREFERRED_NEURON_NAMES: + if c not in PREFERRED_NEURON_NAMES: not_in_preferred.append(c) else: preferred.append(c) @@ -539,7 +539,7 @@ def analyse_connections(cells, neuron_conns, neurons2muscles, muscles, muscle_co nts_tot = {} for c in neuron_conns: nt = c.synclass - if not nt in nts: + if nt not in nts: nts[nt] = 0 nts_tot[nt] = 0 nts[nt] += 1 @@ -558,7 +558,7 @@ def analyse_connections(cells, neuron_conns, neurons2muscles, muscles, muscle_co print_("Found %s muscles: %s\n" % (len(muscles), sorted(muscles))) not_in_preferred = [] for m in muscles: - if not m in PREFERRED_MUSCLE_NAMES: + if m not in PREFERRED_MUSCLE_NAMES: not_in_preferred.append(m) print_( @@ -586,7 +586,7 @@ def analyse_connections(cells, neuron_conns, neurons2muscles, muscles, muscle_co nts_tot = {} for c in muscle_conns: nt = c.synclass - if not nt in nts: + if nt not in nts: nts[nt] = 0 nts_tot[nt] = 0 nts[nt] += 1 diff --git a/c302/Cook2019DataReader.py b/c302/Cook2019DataReader.py index d04878cc..3d417dc8 100644 --- a/c302/Cook2019DataReader.py +++ b/c302/Cook2019DataReader.py @@ -9,12 +9,9 @@ ############################################################ -import csv from c302.ConnectomeReader import ConnectionInfo from c302.ConnectomeReader import analyse_connections -from c302.ConnectomeReader import convert_to_preferred_muscle_name -from c302.ConnectomeReader import is_neuron from c302.ConnectomeReader import is_body_wall_muscle from c302.ConnectomeReader import remove_leading_index_zero diff --git a/c302/NeuroML2/printNML2Info.py b/c302/NeuroML2/printNML2Info.py index ba6e99f2..d0607d1a 100644 --- a/c302/NeuroML2/printNML2Info.py +++ b/c302/NeuroML2/printNML2Info.py @@ -1,4 +1,3 @@ -import neuroml import neuroml.loaders as loaders diff --git a/c302/NeuroMLUtilities.py b/c302/NeuroMLUtilities.py index cc399d9d..11d730f7 100644 --- a/c302/NeuroMLUtilities.py +++ b/c302/NeuroMLUtilities.py @@ -6,12 +6,8 @@ ############################################################ -from c302 import print_ -from c302.ConnectomeReader import PREFERRED_NEURON_NAMES -from c302.ConnectomeReader import PREFERRED_MUSCLE_NAMES -from c302.ConnectomeReader import ConnectionInfo from c302.ConnectomeReader import analyse_connections diff --git a/c302/VarshneyDataReader.py b/c302/VarshneyDataReader.py index d01fe88e..9a65d756 100644 --- a/c302/VarshneyDataReader.py +++ b/c302/VarshneyDataReader.py @@ -70,7 +70,7 @@ def read_muscle_data(): conns.append(ConnectionInfo(pre, post, num, syntype, synclass)) if pre not in neurons: neurons.append(pre) - if not post in muscles: + if post not in muscles: muscles.append(post) return neurons, muscles, conns diff --git a/c302/W_SpreadsheetDataReader.py b/c302/W_SpreadsheetDataReader.py index dbd1dfb4..6f48ec47 100644 --- a/c302/W_SpreadsheetDataReader.py +++ b/c302/W_SpreadsheetDataReader.py @@ -2,7 +2,6 @@ from c302.ConnectomeReader import analyse_connections from c302.ConnectomeReader import convert_to_preferred_muscle_name from c302.ConnectomeReader import is_neuron -from c302.ConnectomeReader import is_body_wall_muscle from openpyxl import load_workbook import os diff --git a/c302/WhiteDataReader.py b/c302/WhiteDataReader.py index a4111d93..facde852 100644 --- a/c302/WhiteDataReader.py +++ b/c302/WhiteDataReader.py @@ -9,7 +9,6 @@ ############################################################ -import csv from c302.ConnectomeReader import ConnectionInfo from c302.ConnectomeReader import analyse_connections diff --git a/c302/WormNeuroAtlasReader.py b/c302/WormNeuroAtlasReader.py index a37c71a3..27588e8e 100644 --- a/c302/WormNeuroAtlasReader.py +++ b/c302/WormNeuroAtlasReader.py @@ -1,5 +1,4 @@ import logging -import re from c302.NeuroMLUtilities import ConnectionInfo from c302.NeuroMLUtilities import analyse_connections @@ -93,9 +92,9 @@ def read_data(self, include_nonconnected_cells=False): connection = True if connection: - if not pre in connected_cells: + if pre not in connected_cells: connected_cells.append(pre) - if not post in connected_cells: + if post not in connected_cells: connected_cells.append(post) if include_nonconnected_cells: diff --git a/c302/analyse.py b/c302/analyse.py index fa09524d..90fdfd4f 100644 --- a/c302/analyse.py +++ b/c302/analyse.py @@ -1,7 +1,6 @@ import sys import matplotlib.pyplot as plt from pylab import * -from matplotlib.backends.backend_agg import FigureCanvasAgg as FigureCanvas fig = plt.figure(facecolor="#FFFFFF", edgecolor="#FFFFFF") diff --git a/c302/c302_IClampMuscle.py b/c302/c302_IClampMuscle.py index 7b92250d..f860c8d3 100644 --- a/c302/c302_IClampMuscle.py +++ b/c302/c302_IClampMuscle.py @@ -1,6 +1,5 @@ import c302 import sys -import neuroml.writers as writers def setup( diff --git a/c302/c302_TargetMuscle.py b/c302/c302_TargetMuscle.py index cdcf9ae6..927ce365 100644 --- a/c302/c302_TargetMuscle.py +++ b/c302/c302_TargetMuscle.py @@ -1,6 +1,5 @@ import c302 import sys -import neuroml.writers as writers def setup( diff --git a/c302/c302_info.py b/c302/c302_info.py index 70eb9367..3982ddef 100644 --- a/c302/c302_info.py +++ b/c302/c302_info.py @@ -1,8 +1,3 @@ -import sys -import os -from pyneuroml import pynml -import matplotlib.pyplot as plt -import numpy as np import c302 @@ -15,14 +10,14 @@ def generate_c302_info(nml_doc, verbose=False): all_cells = [] for cp in net.continuous_projections: - if not cp.presynaptic_population in cc_exc_conns.keys(): + if cp.presynaptic_population not in cc_exc_conns.keys(): cc_exc_conns[cp.presynaptic_population] = {} - if not cp.presynaptic_population in cc_inh_conns.keys(): + if cp.presynaptic_population not in cc_inh_conns.keys(): cc_inh_conns[cp.presynaptic_population] = {} - if not cp.presynaptic_population in all_cells: + if cp.presynaptic_population not in all_cells: all_cells.append(cp.presynaptic_population) - if not cp.postsynaptic_population in all_cells: + if cp.postsynaptic_population not in all_cells: all_cells.append(cp.postsynaptic_population) for c in cp.continuous_connection_instance_ws: @@ -37,12 +32,12 @@ def generate_c302_info(nml_doc, verbose=False): gj_conns = {} for ep in net.electrical_projections: - if not ep.presynaptic_population in gj_conns.keys(): + if ep.presynaptic_population not in gj_conns.keys(): gj_conns[ep.presynaptic_population] = {} - if not ep.presynaptic_population in all_cells: + if ep.presynaptic_population not in all_cells: all_cells.append(ep.presynaptic_population) - if not ep.postsynaptic_population in all_cells: + if ep.postsynaptic_population not in all_cells: all_cells.append(ep.postsynaptic_population) for e in ep.electrical_connection_instance_ws: @@ -56,7 +51,6 @@ def generate_c302_info(nml_doc, verbose=False): from PyOpenWorm import ( connect as pyow_connect, __version__ as pyow_version, - ConnectionFailError, ) pow_conn = pyow_connect("./pyopenworm.conf") diff --git a/c302/c302_utils.py b/c302/c302_utils.py index 29d6d2a0..bad981a1 100644 --- a/c302/c302_utils.py +++ b/c302/c302_utils.py @@ -1,12 +1,10 @@ import sys import os import re -import collections import traceback import matplotlib.pyplot as plt import numpy as np -from pyneuroml import pynml from pyneuroml import plot as pyneuroml_plot import c302 @@ -414,7 +412,6 @@ def _show_conn_matrix( title = "%s: %s" % (type, t) plt.title(title) fig.canvas.manager.set_window_title(title) - import matplotlib # cm = matplotlib.cm.get_cmap('gist_stern_r') if colormap == None: @@ -471,14 +468,14 @@ def generate_conn_matrix( all_cells = [] for cp in net.continuous_projections: - if not cp.presynaptic_population in cc_exc_conns.keys(): + if cp.presynaptic_population not in cc_exc_conns.keys(): cc_exc_conns[cp.presynaptic_population] = {} - if not cp.presynaptic_population in cc_inh_conns.keys(): + if cp.presynaptic_population not in cc_inh_conns.keys(): cc_inh_conns[cp.presynaptic_population] = {} - if not cp.presynaptic_population in all_cells: + if cp.presynaptic_population not in all_cells: all_cells.append(cp.presynaptic_population) - if not cp.postsynaptic_population in all_cells: + if cp.postsynaptic_population not in all_cells: all_cells.append(cp.postsynaptic_population) for c in cp.continuous_connection_instance_ws: @@ -493,12 +490,12 @@ def generate_conn_matrix( gj_conns = {} for ep in net.electrical_projections: - if not ep.presynaptic_population in gj_conns.keys(): + if ep.presynaptic_population not in gj_conns.keys(): gj_conns[ep.presynaptic_population] = {} - if not ep.presynaptic_population in all_cells: + if ep.presynaptic_population not in all_cells: all_cells.append(ep.presynaptic_population) - if not ep.postsynaptic_population in all_cells: + if ep.postsynaptic_population not in all_cells: all_cells.append(ep.postsynaptic_population) for e in ep.electrical_connection_instance_ws: @@ -773,5 +770,5 @@ def generate_conn_matrix( colormap=colormap, ) - if not "-nogui" in sys.argv: + if "-nogui" not in sys.argv: plt.show() diff --git a/c302/parameters_C1.py b/c302/parameters_C1.py index fac01f56..33463103 100644 --- a/c302/parameters_C1.py +++ b/c302/parameters_C1.py @@ -29,7 +29,7 @@ def set_default_bioparameters(self): param_C = ParameterisedModel_C() param_C.set_default_bioparameters() for b in param_C.bioparameters: - if not "syn" in b.name: + if "syn" not in b.name: self.add_bioparameter_obj(b) self.add_bioparameter( diff --git a/c302/parameters_D.py b/c302/parameters_D.py index bc46f45d..93a94738 100644 --- a/c302/parameters_D.py +++ b/c302/parameters_D.py @@ -20,9 +20,6 @@ from neuroml import Morphology from neuroml import Point3DWithDiam from neuroml import Segment -from neuroml import SegmentParent -from neuroml import Member -from neuroml import SegmentGroup from neuroml import BiophysicalProperties from neuroml import IntracellularProperties from neuroml import Resistivity diff --git a/c302/parameters_D1.py b/c302/parameters_D1.py index 208c5829..00d9ced8 100644 --- a/c302/parameters_D1.py +++ b/c302/parameters_D1.py @@ -13,23 +13,8 @@ """ -from neuroml import Cell -from neuroml import Morphology -from neuroml import Point3DWithDiam -from neuroml import Segment -from neuroml import BiophysicalProperties -from neuroml import IntracellularProperties -from neuroml import Resistivity -from neuroml import Species -from neuroml import MembraneProperties -from neuroml import InitMembPotential -from neuroml import SpecificCapacitance -from neuroml import ChannelDensity -from neuroml import SpikeThresh -from neuroml import FixedFactorConcentrationModel from neuroml import GapJunction -from neuroml import PulseGenerator from c302.parameters_D import ParameterisedModel as ParameterisedModel_D diff --git a/c302/parameters_X.py b/c302/parameters_X.py index cc004261..b64f889a 100644 --- a/c302/parameters_X.py +++ b/c302/parameters_X.py @@ -23,7 +23,6 @@ from neuroml import ChannelDensity from neuroml import SpikeThresh -from neuroml import GradedSynapse from neuroml import GapJunction from neuroml import PulseGenerator diff --git a/examples/parametersweep/CanonicalCircuit.py b/examples/parametersweep/CanonicalCircuit.py index 8a90c913..d899f7b6 100644 --- a/examples/parametersweep/CanonicalCircuit.py +++ b/examples/parametersweep/CanonicalCircuit.py @@ -1,6 +1,5 @@ from neuromllite import * from neuromllite.NetworkGenerator import * -from neuromllite.utils import create_new_model import sys sys.path.append("..") diff --git a/examples/parametersweep/Generate.py b/examples/parametersweep/Generate.py index ccf940eb..08ec6bb9 100644 --- a/examples/parametersweep/Generate.py +++ b/examples/parametersweep/Generate.py @@ -1,4 +1,3 @@ -import c302 from c302.c302_IClampMuscle import setup setup( diff --git a/examples/parametersweep/Sweep.py b/examples/parametersweep/Sweep.py index f92e3342..0571168a 100644 --- a/examples/parametersweep/Sweep.py +++ b/examples/parametersweep/Sweep.py @@ -114,7 +114,7 @@ import matplotlib.pyplot as plt - if not "-nogui" in sys.argv: + if "-nogui" not in sys.argv: print("Showing plots") plt.show() @@ -184,7 +184,7 @@ import matplotlib.pyplot as plt - if not "-nogui" in sys.argv: + if "-nogui" not in sys.argv: print("Showing plots") plt.show() @@ -244,7 +244,7 @@ import matplotlib.pyplot as plt - if not "-nogui" in sys.argv: + if "-nogui" not in sys.argv: print("Showing plots") plt.show() @@ -316,6 +316,6 @@ import matplotlib.pyplot as plt - if not "-nogui" in sys.argv: + if "-nogui" not in sys.argv: print("Showing plots") plt.show() From 84e587aa2c53330a2c70e446a1e20340811fb9e8 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Thu, 9 Jan 2025 15:46:37 +0000 Subject: [PATCH 4/9] Fixing readers --- c302/OpenWormReader.py | 4 ++-- c302/SpreadsheetDataReader.py | 4 ++-- c302/UpdatedSpreadsheetDataReader.py | 4 ++-- c302/UpdatedSpreadsheetDataReader2.py | 4 ++-- c302/VarshneyDataReader.py | 4 ++-- c302/White_A.py | 2 +- c302/White_L4.py | 2 +- c302/White_whole.py | 2 +- c302/WitvlietDataReader1.py | 2 +- c302/WitvlietDataReader2.py | 2 +- c302/WormNeuroAtlasReader.py | 4 ++-- test.sh | 2 ++ 12 files changed, 19 insertions(+), 17 deletions(-) diff --git a/c302/OpenWormReader.py b/c302/OpenWormReader.py index 02e9feed..933829c3 100644 --- a/c302/OpenWormReader.py +++ b/c302/OpenWormReader.py @@ -1,8 +1,8 @@ import logging import re -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections from c302 import print_, MUSCLE_RE try: diff --git a/c302/SpreadsheetDataReader.py b/c302/SpreadsheetDataReader.py index e8ac18c8..e8c2348c 100644 --- a/c302/SpreadsheetDataReader.py +++ b/c302/SpreadsheetDataReader.py @@ -10,8 +10,8 @@ ############################################################ -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections from xlrd import open_workbook import os diff --git a/c302/UpdatedSpreadsheetDataReader.py b/c302/UpdatedSpreadsheetDataReader.py index 97f66086..0cf9d4a8 100644 --- a/c302/UpdatedSpreadsheetDataReader.py +++ b/c302/UpdatedSpreadsheetDataReader.py @@ -11,8 +11,8 @@ import csv -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections import os from c302 import print_ diff --git a/c302/UpdatedSpreadsheetDataReader2.py b/c302/UpdatedSpreadsheetDataReader2.py index 234e283c..20286823 100644 --- a/c302/UpdatedSpreadsheetDataReader2.py +++ b/c302/UpdatedSpreadsheetDataReader2.py @@ -12,8 +12,8 @@ import csv -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections import os from c302 import print_ diff --git a/c302/VarshneyDataReader.py b/c302/VarshneyDataReader.py index 9a65d756..1717bd71 100644 --- a/c302/VarshneyDataReader.py +++ b/c302/VarshneyDataReader.py @@ -1,5 +1,5 @@ -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections from openpyxl import load_workbook import os diff --git a/c302/White_A.py b/c302/White_A.py index a43bb00c..0b5546d6 100644 --- a/c302/White_A.py +++ b/c302/White_A.py @@ -3,7 +3,7 @@ from c302.WhiteDataReader import White_A -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import analyse_connections read_data = White_A.read_data read_muscle_data = White_A.read_muscle_data diff --git a/c302/White_L4.py b/c302/White_L4.py index b8208de0..70cd9eb8 100644 --- a/c302/White_L4.py +++ b/c302/White_L4.py @@ -3,7 +3,7 @@ from c302.WhiteDataReader import White_L4 -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import analyse_connections read_data = White_L4.read_data read_muscle_data = White_L4.read_muscle_data diff --git a/c302/White_whole.py b/c302/White_whole.py index 35b4dd28..97014a2e 100644 --- a/c302/White_whole.py +++ b/c302/White_whole.py @@ -3,7 +3,7 @@ from c302.WhiteDataReader import White_whole -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import analyse_connections read_data = White_whole.read_data read_muscle_data = White_whole.read_muscle_data diff --git a/c302/WitvlietDataReader1.py b/c302/WitvlietDataReader1.py index 34f6b846..62015179 100644 --- a/c302/WitvlietDataReader1.py +++ b/c302/WitvlietDataReader1.py @@ -2,7 +2,7 @@ # Should be tidied up. from c302.W_SpreadsheetDataReader import WitvlietDataReader -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import analyse_connections wdr = WitvlietDataReader("witvliet_2020_7.xlsx") diff --git a/c302/WitvlietDataReader2.py b/c302/WitvlietDataReader2.py index e5ea61e8..4c686289 100644 --- a/c302/WitvlietDataReader2.py +++ b/c302/WitvlietDataReader2.py @@ -2,7 +2,7 @@ # Should be tidied up. from c302.W_SpreadsheetDataReader import WitvlietDataReader -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import analyse_connections wdr = WitvlietDataReader("witvliet_2020_8.xlsx") diff --git a/c302/WormNeuroAtlasReader.py b/c302/WormNeuroAtlasReader.py index 27588e8e..d0195fc6 100644 --- a/c302/WormNeuroAtlasReader.py +++ b/c302/WormNeuroAtlasReader.py @@ -1,7 +1,7 @@ import logging -from c302.NeuroMLUtilities import ConnectionInfo -from c302.NeuroMLUtilities import analyse_connections +from c302.ConnectomeReader import ConnectionInfo +from c302.ConnectomeReader import analyse_connections from c302 import print_ import wormneuroatlas as wa diff --git a/test.sh b/test.sh index f6919554..367452f6 100755 --- a/test.sh +++ b/test.sh @@ -1,5 +1,7 @@ set -ex +pip install . + ## Test readers python -m c302.SpreadsheetDataReader From 0e947391b4a7de81d42e72cb35ca3e9e28b08f69 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Thu, 9 Jan 2025 17:59:54 +0000 Subject: [PATCH 5/9] Improved cellx/worm2d example --- .gitignore | 1 + examples/parametersweep/GenerateExamples.py | 9 ++++++--- examples/parametersweep/cell_X.xml | 2 +- examples/parametersweep/regenerateAndTest.sh | 1 + 4 files changed, 9 insertions(+), 4 deletions(-) diff --git a/.gitignore b/.gitignore index 50673366..15480bf9 100644 --- a/.gitignore +++ b/.gitignore @@ -106,3 +106,4 @@ arm64 /examples/test/images/c302_C1_Social.net.nml /examples/test/images/c302_C1_Syns.net.nml *ken.sh +/examples/parametersweep/IClamp_GenericNeuronCellX__lems.xml diff --git a/examples/parametersweep/GenerateExamples.py b/examples/parametersweep/GenerateExamples.py index e79f6512..8263622e 100644 --- a/examples/parametersweep/GenerateExamples.py +++ b/examples/parametersweep/GenerateExamples.py @@ -31,7 +31,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): parameters = {} parameters["stim_amp"] = "350pA" - if cell_id is not 'GenericNeuronCellX': + if cell_id is not 'GenericNeuronCellX': input_source = InputSource( id="iclamp_0", neuroml2_input="PulseGenerator", @@ -46,7 +46,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): id="iclamp_0", neuroml2_input="PulseGeneratorDL", parameters={ - "amplitude": "1", + "amplitude": "stim_amp", "delay": "2000ms", "duration": "6000ms", }, @@ -84,6 +84,9 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): sim.record_traces={} sim.record_variables={"V": {"all": "*"}, "state": {"all": "*"}, "output": {"all": "*"}} + #qprint(dir(sim)) + sim.to_json_file() + return sim, net @@ -95,7 +98,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): elif "-x" in sys.argv: - sim, net = generate("GenericNeuronCellX", 10000, config="IClamp", parameters={"stim_amp": "1pA"}) + sim, net = generate("GenericNeuronCellX", 10000, config="IClamp", parameters={"stim_amp": "1"}) check_to_generate_or_run(sys.argv, sim) else: diff --git a/examples/parametersweep/cell_X.xml b/examples/parametersweep/cell_X.xml index 5b9d45dc..786f058e 100644 --- a/examples/parametersweep/cell_X.xml +++ b/examples/parametersweep/cell_X.xml @@ -52,7 +52,7 @@ - + diff --git a/examples/parametersweep/regenerateAndTest.sh b/examples/parametersweep/regenerateAndTest.sh index 43f61c11..a99254fd 100755 --- a/examples/parametersweep/regenerateAndTest.sh +++ b/examples/parametersweep/regenerateAndTest.sh @@ -2,6 +2,7 @@ set -ex python GenerateExamples.py -all python GenerateExamples.py -jnml +python GenerateExamples.py -x python GenerateExamples.py -x -jnml python CanonicalCircuit.py From ed4d58ba673ac1ce66ac57294fa1407c333b4087 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Mon, 13 Jan 2025 09:25:36 +0000 Subject: [PATCH 6/9] Use dimensional membrane potential etc --- examples/custom_synapses.xml | 24 ++++++++- examples/parametersweep/CanonicalCircuit.py | 55 ++++++++++++++------ examples/parametersweep/Canonical_X.json | 16 +++--- examples/parametersweep/Canonical_X.net.nml | 20 +++---- examples/parametersweep/GenerateExamples.py | 6 +-- examples/parametersweep/SimCanonical_X.json | 14 +++-- examples/parametersweep/cell_X.xml | 21 ++++---- examples/parametersweep/regenerateAndTest.sh | 1 + examples/parametersweep/test_syns.xml | 8 ++- 9 files changed, 111 insertions(+), 54 deletions(-) diff --git a/examples/custom_synapses.xml b/examples/custom_synapses.xml index 42dd750d..fd32acef 100644 --- a/examples/custom_synapses.xml +++ b/examples/custom_synapses.xml @@ -1,6 +1,28 @@ - + + + + + + + + + + + + + + + + + + + + + - Generated by NeuroMLlite v0.5.9 + + Generated by NeuroMLlite v0.6.1 Generated network: Canonical_X Generation seed: 1234 NeuroMLlite parameters: @@ -8,11 +8,11 @@ stim_duration = 250ms weight_IN_MN = 1 weight_MN_MN_Exc = 1 - weight_MN_MN_Inh = 1 - + weight_MN_MN_Inh = -1 + - - + + @@ -52,11 +52,11 @@ - - + + - - + + diff --git a/examples/parametersweep/GenerateExamples.py b/examples/parametersweep/GenerateExamples.py index 8263622e..c0116ff3 100644 --- a/examples/parametersweep/GenerateExamples.py +++ b/examples/parametersweep/GenerateExamples.py @@ -44,7 +44,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): else: input_source = InputSource( id="iclamp_0", - neuroml2_input="PulseGeneratorDL", + neuroml2_input="PulseGenerator", parameters={ "amplitude": "stim_amp", "delay": "2000ms", @@ -82,7 +82,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): if cell_id=='GenericNeuronCellX': sim.record_traces={} - sim.record_variables={"V": {"all": "*"}, "state": {"all": "*"}, "output": {"all": "*"}} + sim.record_variables={"v": {"all": "*"}, "state": {"all": "*"}, "output": {"all": "*"}} #qprint(dir(sim)) sim.to_json_file() @@ -98,7 +98,7 @@ def generate(cell, duration=3000, config="IClamp", parameters=None): elif "-x" in sys.argv: - sim, net = generate("GenericNeuronCellX", 10000, config="IClamp", parameters={"stim_amp": "1"}) + sim, net = generate("GenericNeuronCellX", 10000, config="IClamp", parameters={"stim_amp": "1pA"}) check_to_generate_or_run(sys.argv, sim) else: diff --git a/examples/parametersweep/SimCanonical_X.json b/examples/parametersweep/SimCanonical_X.json index d5adf60a..f6c49233 100644 --- a/examples/parametersweep/SimCanonical_X.json +++ b/examples/parametersweep/SimCanonical_X.json @@ -4,13 +4,19 @@ "network": "Canonical_X.json", "duration": 3000.0, "dt": 0.1, - "record_traces": { - "all": "*" + "record_traces": {}, + "record_variables": { + "state": { + "all": "*" + }, + "output": { + "all": "*" + } }, "plots2D": { "DB-VB": { - "x_axis": "DB/0/GenericNeuronCellX/v", - "y_axis": "VB/0/GenericNeuronCellX/v" + "x_axis": "DB/0/GenericNeuronCellX/output", + "y_axis": "VB/0/GenericNeuronCellX/output" } } } diff --git a/examples/parametersweep/cell_X.xml b/examples/parametersweep/cell_X.xml index 786f058e..5d1001cb 100644 --- a/examples/parametersweep/cell_X.xml +++ b/examples/parametersweep/cell_X.xml @@ -1,7 +1,7 @@ @@ -11,12 +11,14 @@ - + + + - - + + @@ -25,25 +27,24 @@ - - + + - - + - + - + diff --git a/examples/parametersweep/regenerateAndTest.sh b/examples/parametersweep/regenerateAndTest.sh index a99254fd..04f1acb3 100755 --- a/examples/parametersweep/regenerateAndTest.sh +++ b/examples/parametersweep/regenerateAndTest.sh @@ -7,4 +7,5 @@ python GenerateExamples.py -x -jnml python CanonicalCircuit.py python CanonicalCircuit.py -jnml +python CanonicalCircuit.py -x -jnml diff --git a/examples/parametersweep/test_syns.xml b/examples/parametersweep/test_syns.xml index aa7ceff8..1584a46a 100644 --- a/examples/parametersweep/test_syns.xml +++ b/examples/parametersweep/test_syns.xml @@ -3,13 +3,17 @@ + + + + - + From 6a7f6691f39ec26edbd1a7b027fda1703779448b Mon Sep 17 00:00:00 2001 From: pgleeson Date: Mon, 13 Jan 2025 18:21:54 +0000 Subject: [PATCH 7/9] Testing NeuroMLlite examples --- .gitignore | 2 ++ c302/custom_synapses.xml | 24 +++++++++++++++++++++++- test.sh | 5 +++++ 3 files changed, 30 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 15480bf9..6b4a509f 100644 --- a/.gitignore +++ b/.gitignore @@ -107,3 +107,5 @@ arm64 /examples/test/images/c302_C1_Syns.net.nml *ken.sh /examples/parametersweep/IClamp_GenericNeuronCellX__lems.xml +/examples/parametersweep/LEMS_SimCanonical_X.png +/examples/parametersweep/Canonical_X__lems.xml diff --git a/c302/custom_synapses.xml b/c302/custom_synapses.xml index 42dd750d..fd32acef 100644 --- a/c302/custom_synapses.xml +++ b/c302/custom_synapses.xml @@ -1,6 +1,28 @@ - + + + + + + + + + + + + + + + + + + + + + Date: Mon, 13 Jan 2025 19:20:56 +0000 Subject: [PATCH 8/9] Regenerated nml & lems --- examples/LEMS_c302_A_Full.xml | 6 +++--- examples/LEMS_c302_A_IClamp.xml | 6 +++--- examples/LEMS_c302_A_Muscles.xml | 6 +++--- examples/LEMS_c302_A_Oscillator.xml | 6 +++--- examples/LEMS_c302_A_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_A_Social.xml | 6 +++--- examples/LEMS_c302_A_Syns.xml | 6 +++--- examples/LEMS_c302_B_Full.xml | 6 +++--- examples/LEMS_c302_B_IClamp.xml | 6 +++--- examples/LEMS_c302_B_Muscles.xml | 6 +++--- examples/LEMS_c302_B_Oscillator.xml | 6 +++--- examples/LEMS_c302_B_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_B_Social.xml | 6 +++--- examples/LEMS_c302_B_Syns.xml | 6 +++--- examples/LEMS_c302_C0_Full.xml | 6 +++--- examples/LEMS_c302_C0_IClamp.xml | 6 +++--- examples/LEMS_c302_C0_Muscles.xml | 6 +++--- examples/LEMS_c302_C0_Oscillator.xml | 6 +++--- examples/LEMS_c302_C0_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_C0_Social.xml | 6 +++--- examples/LEMS_c302_C0_Syns.xml | 6 +++--- examples/LEMS_c302_C1_Full.xml | 6 +++--- examples/LEMS_c302_C1_IClamp.xml | 6 +++--- examples/LEMS_c302_C1_Muscles.xml | 6 +++--- examples/LEMS_c302_C1_Oscillator.xml | 6 +++--- examples/LEMS_c302_C1_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_C1_Social.xml | 6 +++--- examples/LEMS_c302_C1_Syns.xml | 6 +++--- examples/LEMS_c302_C2_FW.xml | 6 +++--- examples/LEMS_c302_C2_Full.xml | 6 +++--- examples/LEMS_c302_C2_IClamp.xml | 6 +++--- examples/LEMS_c302_C2_Muscles.xml | 6 +++--- examples/LEMS_c302_C2_Oscillator.xml | 6 +++--- examples/LEMS_c302_C2_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_C2_Social.xml | 6 +++--- examples/LEMS_c302_C2_Syns.xml | 6 +++--- examples/LEMS_c302_C_Full.xml | 6 +++--- examples/LEMS_c302_C_IClamp.xml | 6 +++--- examples/LEMS_c302_C_Muscles.xml | 6 +++--- examples/LEMS_c302_C_Oscillator.xml | 6 +++--- examples/LEMS_c302_C_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_C_Social.xml | 6 +++--- examples/LEMS_c302_C_Syns.xml | 6 +++--- examples/LEMS_c302_D1_Full.xml | 6 +++--- examples/LEMS_c302_D1_IClamp.xml | 6 +++--- examples/LEMS_c302_D1_Muscles.xml | 6 +++--- examples/LEMS_c302_D1_Oscillator.xml | 6 +++--- examples/LEMS_c302_D1_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_D1_Social.xml | 6 +++--- examples/LEMS_c302_D1_Syns.xml | 6 +++--- examples/LEMS_c302_D_Full.xml | 6 +++--- examples/LEMS_c302_D_IClamp.xml | 6 +++--- examples/LEMS_c302_D_Muscles.xml | 6 +++--- examples/LEMS_c302_D_Oscillator.xml | 6 +++--- examples/LEMS_c302_D_Pharyngeal.xml | 6 +++--- examples/LEMS_c302_D_Social.xml | 6 +++--- examples/LEMS_c302_D_Syns.xml | 6 +++--- examples/c302_A_Full.net.nml | 6 +++--- examples/c302_A_IClamp.net.nml | 6 +++--- examples/c302_A_Muscles.net.nml | 6 +++--- examples/c302_A_Oscillator.net.nml | 6 +++--- examples/c302_A_Pharyngeal.net.nml | 6 +++--- examples/c302_A_Social.net.nml | 6 +++--- examples/c302_A_Syns.net.nml | 6 +++--- examples/c302_B_Full.net.nml | 6 +++--- examples/c302_B_IClamp.net.nml | 6 +++--- examples/c302_B_Muscles.net.nml | 6 +++--- examples/c302_B_Oscillator.net.nml | 6 +++--- examples/c302_B_Pharyngeal.net.nml | 6 +++--- examples/c302_B_Social.net.nml | 6 +++--- examples/c302_B_Syns.net.nml | 6 +++--- examples/c302_C0_Full.net.nml | 6 +++--- examples/c302_C0_IClamp.net.nml | 6 +++--- examples/c302_C0_Muscles.net.nml | 6 +++--- examples/c302_C0_Oscillator.net.nml | 6 +++--- examples/c302_C0_Pharyngeal.net.nml | 6 +++--- examples/c302_C0_Social.net.nml | 6 +++--- examples/c302_C0_Syns.net.nml | 6 +++--- examples/c302_C1_Full.net.nml | 6 +++--- examples/c302_C1_IClamp.net.nml | 6 +++--- examples/c302_C1_Muscles.net.nml | 6 +++--- examples/c302_C1_Oscillator.net.nml | 6 +++--- examples/c302_C1_Pharyngeal.net.nml | 6 +++--- examples/c302_C1_Social.net.nml | 6 +++--- examples/c302_C1_Syns.net.nml | 6 +++--- examples/c302_C2_FW.net.nml | 6 +++--- examples/c302_C2_Full.net.nml | 6 +++--- examples/c302_C2_IClamp.net.nml | 6 +++--- examples/c302_C2_Muscles.net.nml | 6 +++--- examples/c302_C2_Oscillator.net.nml | 6 +++--- examples/c302_C2_Pharyngeal.net.nml | 6 +++--- examples/c302_C2_Social.net.nml | 6 +++--- examples/c302_C2_Syns.net.nml | 6 +++--- examples/c302_C_Full.net.nml | 6 +++--- examples/c302_C_IClamp.net.nml | 6 +++--- examples/c302_C_Muscles.net.nml | 6 +++--- examples/c302_C_Oscillator.net.nml | 6 +++--- examples/c302_C_Pharyngeal.net.nml | 6 +++--- examples/c302_C_Social.net.nml | 6 +++--- examples/c302_C_Syns.net.nml | 6 +++--- examples/c302_D1_Full.net.nml | 6 +++--- examples/c302_D1_IClamp.net.nml | 6 +++--- examples/c302_D1_Muscles.net.nml | 6 +++--- examples/c302_D1_Oscillator.net.nml | 6 +++--- examples/c302_D1_Pharyngeal.net.nml | 6 +++--- examples/c302_D1_Social.net.nml | 6 +++--- examples/c302_D1_Syns.net.nml | 6 +++--- examples/c302_D_Full.net.nml | 6 +++--- examples/c302_D_IClamp.net.nml | 6 +++--- examples/c302_D_Muscles.net.nml | 6 +++--- examples/c302_D_Oscillator.net.nml | 6 +++--- examples/c302_D_Pharyngeal.net.nml | 6 +++--- examples/c302_D_Social.net.nml | 6 +++--- examples/c302_D_Syns.net.nml | 6 +++--- 114 files changed, 342 insertions(+), 342 deletions(-) diff --git a/examples/LEMS_c302_A_Full.xml b/examples/LEMS_c302_A_Full.xml index 4c04c408..b1f1ae9c 100644 --- a/examples/LEMS_c302_A_Full.xml +++ b/examples/LEMS_c302_A_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_A_IClamp.xml b/examples/LEMS_c302_A_IClamp.xml index ce089f65..f0766a1c 100644 --- a/examples/LEMS_c302_A_IClamp.xml +++ b/examples/LEMS_c302_A_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_A_Muscles.xml b/examples/LEMS_c302_A_Muscles.xml index 35876b5a..6d20835a 100644 --- a/examples/LEMS_c302_A_Muscles.xml +++ b/examples/LEMS_c302_A_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_A_Oscillator.xml b/examples/LEMS_c302_A_Oscillator.xml index f49d8c52..dec19c06 100644 --- a/examples/LEMS_c302_A_Oscillator.xml +++ b/examples/LEMS_c302_A_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_A_Pharyngeal.xml b/examples/LEMS_c302_A_Pharyngeal.xml index 52b4ce85..753a5c4a 100644 --- a/examples/LEMS_c302_A_Pharyngeal.xml +++ b/examples/LEMS_c302_A_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_A_Social.xml b/examples/LEMS_c302_A_Social.xml index b06f72fe..fd4dbcae 100644 --- a/examples/LEMS_c302_A_Social.xml +++ b/examples/LEMS_c302_A_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_A_Syns.xml b/examples/LEMS_c302_A_Syns.xml index e40da337..0dd73142 100644 --- a/examples/LEMS_c302_A_Syns.xml +++ b/examples/LEMS_c302_A_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Full.xml b/examples/LEMS_c302_B_Full.xml index 3d02edc1..987ede35 100644 --- a/examples/LEMS_c302_B_Full.xml +++ b/examples/LEMS_c302_B_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_B_IClamp.xml b/examples/LEMS_c302_B_IClamp.xml index 84112fdd..098f2ac9 100644 --- a/examples/LEMS_c302_B_IClamp.xml +++ b/examples/LEMS_c302_B_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Muscles.xml b/examples/LEMS_c302_B_Muscles.xml index bee930d5..b730185c 100644 --- a/examples/LEMS_c302_B_Muscles.xml +++ b/examples/LEMS_c302_B_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_B_Oscillator.xml b/examples/LEMS_c302_B_Oscillator.xml index 5a86a2d2..4c5e1224 100644 --- a/examples/LEMS_c302_B_Oscillator.xml +++ b/examples/LEMS_c302_B_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_B_Pharyngeal.xml b/examples/LEMS_c302_B_Pharyngeal.xml index 03f92387..c2250e30 100644 --- a/examples/LEMS_c302_B_Pharyngeal.xml +++ b/examples/LEMS_c302_B_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_B_Social.xml b/examples/LEMS_c302_B_Social.xml index b497c768..c394505f 100644 --- a/examples/LEMS_c302_B_Social.xml +++ b/examples/LEMS_c302_B_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Syns.xml b/examples/LEMS_c302_B_Syns.xml index a5def0d9..de70bf33 100644 --- a/examples/LEMS_c302_B_Syns.xml +++ b/examples/LEMS_c302_B_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Full.xml b/examples/LEMS_c302_C0_Full.xml index 2b919ffa..99bda737 100644 --- a/examples/LEMS_c302_C0_Full.xml +++ b/examples/LEMS_c302_C0_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C0_IClamp.xml b/examples/LEMS_c302_C0_IClamp.xml index 6fc753f9..ca939bda 100644 --- a/examples/LEMS_c302_C0_IClamp.xml +++ b/examples/LEMS_c302_C0_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Muscles.xml b/examples/LEMS_c302_C0_Muscles.xml index b420b0fe..9880e8a0 100644 --- a/examples/LEMS_c302_C0_Muscles.xml +++ b/examples/LEMS_c302_C0_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Oscillator.xml b/examples/LEMS_c302_C0_Oscillator.xml index 937deb48..08094d0f 100644 --- a/examples/LEMS_c302_C0_Oscillator.xml +++ b/examples/LEMS_c302_C0_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Pharyngeal.xml b/examples/LEMS_c302_C0_Pharyngeal.xml index 6c4a4f44..9c752744 100644 --- a/examples/LEMS_c302_C0_Pharyngeal.xml +++ b/examples/LEMS_c302_C0_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Social.xml b/examples/LEMS_c302_C0_Social.xml index a74b503d..c84bb4bd 100644 --- a/examples/LEMS_c302_C0_Social.xml +++ b/examples/LEMS_c302_C0_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Syns.xml b/examples/LEMS_c302_C0_Syns.xml index f32659d7..ff8e250b 100644 --- a/examples/LEMS_c302_C0_Syns.xml +++ b/examples/LEMS_c302_C0_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Full.xml b/examples/LEMS_c302_C1_Full.xml index fbfa833c..bf73a203 100644 --- a/examples/LEMS_c302_C1_Full.xml +++ b/examples/LEMS_c302_C1_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C1_IClamp.xml b/examples/LEMS_c302_C1_IClamp.xml index ce42b434..5805abea 100644 --- a/examples/LEMS_c302_C1_IClamp.xml +++ b/examples/LEMS_c302_C1_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Muscles.xml b/examples/LEMS_c302_C1_Muscles.xml index ce9caa1b..7110c6a6 100644 --- a/examples/LEMS_c302_C1_Muscles.xml +++ b/examples/LEMS_c302_C1_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Oscillator.xml b/examples/LEMS_c302_C1_Oscillator.xml index 06d2e0e0..04ec2555 100644 --- a/examples/LEMS_c302_C1_Oscillator.xml +++ b/examples/LEMS_c302_C1_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Pharyngeal.xml b/examples/LEMS_c302_C1_Pharyngeal.xml index 1011e3df..9a90f370 100644 --- a/examples/LEMS_c302_C1_Pharyngeal.xml +++ b/examples/LEMS_c302_C1_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Social.xml b/examples/LEMS_c302_C1_Social.xml index 925b0f5a..2215b768 100644 --- a/examples/LEMS_c302_C1_Social.xml +++ b/examples/LEMS_c302_C1_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Syns.xml b/examples/LEMS_c302_C1_Syns.xml index 179f7450..0adc0f4e 100644 --- a/examples/LEMS_c302_C1_Syns.xml +++ b/examples/LEMS_c302_C1_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_FW.xml b/examples/LEMS_c302_C2_FW.xml index a9887f0c..0af23d58 100644 --- a/examples/LEMS_c302_C2_FW.xml +++ b/examples/LEMS_c302_C2_FW.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Full.xml b/examples/LEMS_c302_C2_Full.xml index d468c708..7f6e7303 100644 --- a/examples/LEMS_c302_C2_Full.xml +++ b/examples/LEMS_c302_C2_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C2_IClamp.xml b/examples/LEMS_c302_C2_IClamp.xml index 953704d1..096f46b8 100644 --- a/examples/LEMS_c302_C2_IClamp.xml +++ b/examples/LEMS_c302_C2_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Muscles.xml b/examples/LEMS_c302_C2_Muscles.xml index aa93b134..61fe380a 100644 --- a/examples/LEMS_c302_C2_Muscles.xml +++ b/examples/LEMS_c302_C2_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Oscillator.xml b/examples/LEMS_c302_C2_Oscillator.xml index 4d0b336a..35fb9fde 100644 --- a/examples/LEMS_c302_C2_Oscillator.xml +++ b/examples/LEMS_c302_C2_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Pharyngeal.xml b/examples/LEMS_c302_C2_Pharyngeal.xml index 03fe1915..feaca7f6 100644 --- a/examples/LEMS_c302_C2_Pharyngeal.xml +++ b/examples/LEMS_c302_C2_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Social.xml b/examples/LEMS_c302_C2_Social.xml index 5e1b62ce..9ef72a03 100644 --- a/examples/LEMS_c302_C2_Social.xml +++ b/examples/LEMS_c302_C2_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Syns.xml b/examples/LEMS_c302_C2_Syns.xml index d571ffc7..860e819d 100644 --- a/examples/LEMS_c302_C2_Syns.xml +++ b/examples/LEMS_c302_C2_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Full.xml b/examples/LEMS_c302_C_Full.xml index 5c844f02..7b616749 100644 --- a/examples/LEMS_c302_C_Full.xml +++ b/examples/LEMS_c302_C_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C_IClamp.xml b/examples/LEMS_c302_C_IClamp.xml index 2707f2b8..0777afd6 100644 --- a/examples/LEMS_c302_C_IClamp.xml +++ b/examples/LEMS_c302_C_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Muscles.xml b/examples/LEMS_c302_C_Muscles.xml index 4da1f31f..459bf6a5 100644 --- a/examples/LEMS_c302_C_Muscles.xml +++ b/examples/LEMS_c302_C_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C_Oscillator.xml b/examples/LEMS_c302_C_Oscillator.xml index 33b2c811..f7740a1c 100644 --- a/examples/LEMS_c302_C_Oscillator.xml +++ b/examples/LEMS_c302_C_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C_Pharyngeal.xml b/examples/LEMS_c302_C_Pharyngeal.xml index b1626106..c35482b9 100644 --- a/examples/LEMS_c302_C_Pharyngeal.xml +++ b/examples/LEMS_c302_C_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C_Social.xml b/examples/LEMS_c302_C_Social.xml index 093d2f0a..bb846e70 100644 --- a/examples/LEMS_c302_C_Social.xml +++ b/examples/LEMS_c302_C_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Syns.xml b/examples/LEMS_c302_C_Syns.xml index 3f0bdc8c..4e37c855 100644 --- a/examples/LEMS_c302_C_Syns.xml +++ b/examples/LEMS_c302_C_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Full.xml b/examples/LEMS_c302_D1_Full.xml index 0160c9ff..003e491a 100644 --- a/examples/LEMS_c302_D1_Full.xml +++ b/examples/LEMS_c302_D1_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_D1_IClamp.xml b/examples/LEMS_c302_D1_IClamp.xml index ec847c6a..0ba3977a 100644 --- a/examples/LEMS_c302_D1_IClamp.xml +++ b/examples/LEMS_c302_D1_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Muscles.xml b/examples/LEMS_c302_D1_Muscles.xml index 6c7b7ce3..629276b2 100644 --- a/examples/LEMS_c302_D1_Muscles.xml +++ b/examples/LEMS_c302_D1_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Oscillator.xml b/examples/LEMS_c302_D1_Oscillator.xml index 25b3d5e0..dd715f62 100644 --- a/examples/LEMS_c302_D1_Oscillator.xml +++ b/examples/LEMS_c302_D1_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Pharyngeal.xml b/examples/LEMS_c302_D1_Pharyngeal.xml index 32473d40..4c0b98d2 100644 --- a/examples/LEMS_c302_D1_Pharyngeal.xml +++ b/examples/LEMS_c302_D1_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Social.xml b/examples/LEMS_c302_D1_Social.xml index c38af0ff..f5261d35 100644 --- a/examples/LEMS_c302_D1_Social.xml +++ b/examples/LEMS_c302_D1_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Syns.xml b/examples/LEMS_c302_D1_Syns.xml index 69ef7e56..f6ecbcf0 100644 --- a/examples/LEMS_c302_D1_Syns.xml +++ b/examples/LEMS_c302_D1_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Full.xml b/examples/LEMS_c302_D_Full.xml index 67956719..939f370f 100644 --- a/examples/LEMS_c302_D_Full.xml +++ b/examples/LEMS_c302_D_Full.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_D_IClamp.xml b/examples/LEMS_c302_D_IClamp.xml index afbd86c8..14c7d24c 100644 --- a/examples/LEMS_c302_D_IClamp.xml +++ b/examples/LEMS_c302_D_IClamp.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Muscles.xml b/examples/LEMS_c302_D_Muscles.xml index 69decd74..adbb3c2b 100644 --- a/examples/LEMS_c302_D_Muscles.xml +++ b/examples/LEMS_c302_D_Muscles.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D_Oscillator.xml b/examples/LEMS_c302_D_Oscillator.xml index 9f2d9dcd..f90ddbf7 100644 --- a/examples/LEMS_c302_D_Oscillator.xml +++ b/examples/LEMS_c302_D_Oscillator.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D_Pharyngeal.xml b/examples/LEMS_c302_D_Pharyngeal.xml index c8eaf6d6..59e95fd9 100644 --- a/examples/LEMS_c302_D_Pharyngeal.xml +++ b/examples/LEMS_c302_D_Pharyngeal.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_D_Social.xml b/examples/LEMS_c302_D_Social.xml index 51c7c058..4304aaee 100644 --- a/examples/LEMS_c302_D_Social.xml +++ b/examples/LEMS_c302_D_Social.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Syns.xml b/examples/LEMS_c302_D_Syns.xml index 15f079be..20e29d64 100644 --- a/examples/LEMS_c302_D_Syns.xml +++ b/examples/LEMS_c302_D_Syns.xml @@ -6,9 +6,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Full.net.nml b/examples/c302_A_Full.net.nml index 28e15dc4..3a1c548f 100644 --- a/examples/c302_A_Full.net.nml +++ b/examples/c302_A_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_A_IClamp.net.nml b/examples/c302_A_IClamp.net.nml index 4773afce..817284f4 100644 --- a/examples/c302_A_IClamp.net.nml +++ b/examples/c302_A_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Muscles.net.nml b/examples/c302_A_Muscles.net.nml index 2aca92e6..989cba06 100644 --- a/examples/c302_A_Muscles.net.nml +++ b/examples/c302_A_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_A_Oscillator.net.nml b/examples/c302_A_Oscillator.net.nml index 71fde6e2..cb32ea23 100644 --- a/examples/c302_A_Oscillator.net.nml +++ b/examples/c302_A_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_A_Pharyngeal.net.nml b/examples/c302_A_Pharyngeal.net.nml index cfd2f229..b4e0a2f3 100644 --- a/examples/c302_A_Pharyngeal.net.nml +++ b/examples/c302_A_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_A_Social.net.nml b/examples/c302_A_Social.net.nml index 3f02e0f1..e70731e2 100644 --- a/examples/c302_A_Social.net.nml +++ b/examples/c302_A_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Syns.net.nml b/examples/c302_A_Syns.net.nml index 0fe54094..6169ea07 100644 --- a/examples/c302_A_Syns.net.nml +++ b/examples/c302_A_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Full.net.nml b/examples/c302_B_Full.net.nml index 08e25f21..398ff8a6 100644 --- a/examples/c302_B_Full.net.nml +++ b/examples/c302_B_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_B_IClamp.net.nml b/examples/c302_B_IClamp.net.nml index 3f36c85f..0bba5a62 100644 --- a/examples/c302_B_IClamp.net.nml +++ b/examples/c302_B_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Muscles.net.nml b/examples/c302_B_Muscles.net.nml index bc95e340..03d3b72d 100644 --- a/examples/c302_B_Muscles.net.nml +++ b/examples/c302_B_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_B_Oscillator.net.nml b/examples/c302_B_Oscillator.net.nml index c8aa599c..226488bc 100644 --- a/examples/c302_B_Oscillator.net.nml +++ b/examples/c302_B_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_B_Pharyngeal.net.nml b/examples/c302_B_Pharyngeal.net.nml index 3e4e7691..33797caf 100644 --- a/examples/c302_B_Pharyngeal.net.nml +++ b/examples/c302_B_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_B_Social.net.nml b/examples/c302_B_Social.net.nml index cb30ebbd..e9514cbd 100644 --- a/examples/c302_B_Social.net.nml +++ b/examples/c302_B_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Syns.net.nml b/examples/c302_B_Syns.net.nml index f699d1da..d793ec2c 100644 --- a/examples/c302_B_Syns.net.nml +++ b/examples/c302_B_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Full.net.nml b/examples/c302_C0_Full.net.nml index 3c332841..1a7b297a 100644 --- a/examples/c302_C0_Full.net.nml +++ b/examples/c302_C0_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C0_IClamp.net.nml b/examples/c302_C0_IClamp.net.nml index 28e6793d..ae73982e 100644 --- a/examples/c302_C0_IClamp.net.nml +++ b/examples/c302_C0_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Muscles.net.nml b/examples/c302_C0_Muscles.net.nml index 08f941da..f1afcb2d 100644 --- a/examples/c302_C0_Muscles.net.nml +++ b/examples/c302_C0_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C0_Oscillator.net.nml b/examples/c302_C0_Oscillator.net.nml index 38a10a4b..1204b17c 100644 --- a/examples/c302_C0_Oscillator.net.nml +++ b/examples/c302_C0_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C0_Pharyngeal.net.nml b/examples/c302_C0_Pharyngeal.net.nml index c1a8329f..36383bcb 100644 --- a/examples/c302_C0_Pharyngeal.net.nml +++ b/examples/c302_C0_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C0_Social.net.nml b/examples/c302_C0_Social.net.nml index 9c26bade..2404278e 100644 --- a/examples/c302_C0_Social.net.nml +++ b/examples/c302_C0_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Syns.net.nml b/examples/c302_C0_Syns.net.nml index 56cccab1..469f4053 100644 --- a/examples/c302_C0_Syns.net.nml +++ b/examples/c302_C0_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Full.net.nml b/examples/c302_C1_Full.net.nml index 423cf198..202115ae 100644 --- a/examples/c302_C1_Full.net.nml +++ b/examples/c302_C1_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C1_IClamp.net.nml b/examples/c302_C1_IClamp.net.nml index a908d29f..d87ec37c 100644 --- a/examples/c302_C1_IClamp.net.nml +++ b/examples/c302_C1_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Muscles.net.nml b/examples/c302_C1_Muscles.net.nml index a3d164bc..c7a886c4 100644 --- a/examples/c302_C1_Muscles.net.nml +++ b/examples/c302_C1_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C1_Oscillator.net.nml b/examples/c302_C1_Oscillator.net.nml index 99e3d648..dc832221 100644 --- a/examples/c302_C1_Oscillator.net.nml +++ b/examples/c302_C1_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C1_Pharyngeal.net.nml b/examples/c302_C1_Pharyngeal.net.nml index 178c624f..221ec3da 100644 --- a/examples/c302_C1_Pharyngeal.net.nml +++ b/examples/c302_C1_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C1_Social.net.nml b/examples/c302_C1_Social.net.nml index 968d6ae9..c228d11e 100644 --- a/examples/c302_C1_Social.net.nml +++ b/examples/c302_C1_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Syns.net.nml b/examples/c302_C1_Syns.net.nml index 8fff8272..d9814214 100644 --- a/examples/c302_C1_Syns.net.nml +++ b/examples/c302_C1_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_FW.net.nml b/examples/c302_C2_FW.net.nml index 39bf6076..e4faadfb 100644 --- a/examples/c302_C2_FW.net.nml +++ b/examples/c302_C2_FW.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Full.net.nml b/examples/c302_C2_Full.net.nml index c585372e..0d890f6c 100644 --- a/examples/c302_C2_Full.net.nml +++ b/examples/c302_C2_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C2_IClamp.net.nml b/examples/c302_C2_IClamp.net.nml index 71e9d0d4..2b242cfe 100644 --- a/examples/c302_C2_IClamp.net.nml +++ b/examples/c302_C2_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Muscles.net.nml b/examples/c302_C2_Muscles.net.nml index ac8886c5..78f5eef7 100644 --- a/examples/c302_C2_Muscles.net.nml +++ b/examples/c302_C2_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C2_Oscillator.net.nml b/examples/c302_C2_Oscillator.net.nml index 9c27e322..dc005ee2 100644 --- a/examples/c302_C2_Oscillator.net.nml +++ b/examples/c302_C2_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C2_Pharyngeal.net.nml b/examples/c302_C2_Pharyngeal.net.nml index 9de6e5f2..9a85ec82 100644 --- a/examples/c302_C2_Pharyngeal.net.nml +++ b/examples/c302_C2_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C2_Social.net.nml b/examples/c302_C2_Social.net.nml index a0a95e3d..24be7dcc 100644 --- a/examples/c302_C2_Social.net.nml +++ b/examples/c302_C2_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Syns.net.nml b/examples/c302_C2_Syns.net.nml index d1954cea..5923c474 100644 --- a/examples/c302_C2_Syns.net.nml +++ b/examples/c302_C2_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Full.net.nml b/examples/c302_C_Full.net.nml index ebd4569b..8da5e705 100644 --- a/examples/c302_C_Full.net.nml +++ b/examples/c302_C_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C_IClamp.net.nml b/examples/c302_C_IClamp.net.nml index 152cd78b..ad8d9b17 100644 --- a/examples/c302_C_IClamp.net.nml +++ b/examples/c302_C_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Muscles.net.nml b/examples/c302_C_Muscles.net.nml index ee053c40..a285b0d9 100644 --- a/examples/c302_C_Muscles.net.nml +++ b/examples/c302_C_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C_Oscillator.net.nml b/examples/c302_C_Oscillator.net.nml index 726f244f..fb0ba8ec 100644 --- a/examples/c302_C_Oscillator.net.nml +++ b/examples/c302_C_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C_Pharyngeal.net.nml b/examples/c302_C_Pharyngeal.net.nml index baf2a88e..781b5094 100644 --- a/examples/c302_C_Pharyngeal.net.nml +++ b/examples/c302_C_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C_Social.net.nml b/examples/c302_C_Social.net.nml index 9d988755..9b102f5c 100644 --- a/examples/c302_C_Social.net.nml +++ b/examples/c302_C_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Syns.net.nml b/examples/c302_C_Syns.net.nml index 80798f71..9042eb68 100644 --- a/examples/c302_C_Syns.net.nml +++ b/examples/c302_C_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Full.net.nml b/examples/c302_D1_Full.net.nml index e14b676c..ed5a3947 100644 --- a/examples/c302_D1_Full.net.nml +++ b/examples/c302_D1_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_D1_IClamp.net.nml b/examples/c302_D1_IClamp.net.nml index 865f6446..6965ab00 100644 --- a/examples/c302_D1_IClamp.net.nml +++ b/examples/c302_D1_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Muscles.net.nml b/examples/c302_D1_Muscles.net.nml index fd29eadd..9b889fca 100644 --- a/examples/c302_D1_Muscles.net.nml +++ b/examples/c302_D1_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D1_Oscillator.net.nml b/examples/c302_D1_Oscillator.net.nml index e8186aaf..67040e4e 100644 --- a/examples/c302_D1_Oscillator.net.nml +++ b/examples/c302_D1_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D1_Pharyngeal.net.nml b/examples/c302_D1_Pharyngeal.net.nml index b8ee1b80..abab5a36 100644 --- a/examples/c302_D1_Pharyngeal.net.nml +++ b/examples/c302_D1_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_D1_Social.net.nml b/examples/c302_D1_Social.net.nml index 0debb627..57660e63 100644 --- a/examples/c302_D1_Social.net.nml +++ b/examples/c302_D1_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Syns.net.nml b/examples/c302_D1_Syns.net.nml index c112e669..ce674375 100644 --- a/examples/c302_D1_Syns.net.nml +++ b/examples/c302_D1_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Full.net.nml b/examples/c302_D_Full.net.nml index b5e4738d..a922428a 100644 --- a/examples/c302_D_Full.net.nml +++ b/examples/c302_D_Full.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_D_IClamp.net.nml b/examples/c302_D_IClamp.net.nml index a3366e8f..a10e2b57 100644 --- a/examples/c302_D_IClamp.net.nml +++ b/examples/c302_D_IClamp.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Muscles.net.nml b/examples/c302_D_Muscles.net.nml index 2c7e0b60..07921492 100644 --- a/examples/c302_D_Muscles.net.nml +++ b/examples/c302_D_Muscles.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D_Oscillator.net.nml b/examples/c302_D_Oscillator.net.nml index 6628b7bb..cad2b0f6 100644 --- a/examples/c302_D_Oscillator.net.nml +++ b/examples/c302_D_Oscillator.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D_Pharyngeal.net.nml b/examples/c302_D_Pharyngeal.net.nml index 691b2bc5..e14d7209 100644 --- a/examples/c302_D_Pharyngeal.net.nml +++ b/examples/c302_D_Pharyngeal.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_D_Social.net.nml b/examples/c302_D_Social.net.nml index 4619d8dc..4206d073 100644 --- a/examples/c302_D_Social.net.nml +++ b/examples/c302_D_Social.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Syns.net.nml b/examples/c302_D_Syns.net.nml index 22a66be1..ac07d428 100644 --- a/examples/c302_D_Syns.net.nml +++ b/examples/c302_D_Syns.net.nml @@ -4,9 +4,9 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.8.1 + owmeta version: - not installed - + owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] From 3aa642a2c4af1f0a4a02ed4b61d799360e048d44 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Mon, 13 Jan 2025 20:13:03 +0000 Subject: [PATCH 9/9] To v0.9.0 --- c302/NeuroMLUtilities.py | 1 - c302/__version__.py | 2 +- c302/c302_info.py | 1 - c302/parameters_D1.py | 1 - examples/LEMS_c302_A_Full.xml | 2 +- examples/LEMS_c302_A_IClamp.xml | 2 +- examples/LEMS_c302_A_Muscles.xml | 2 +- examples/LEMS_c302_A_Oscillator.xml | 2 +- examples/LEMS_c302_A_Pharyngeal.xml | 2 +- examples/LEMS_c302_A_Social.xml | 2 +- examples/LEMS_c302_A_Syns.xml | 2 +- examples/LEMS_c302_B_Full.xml | 2 +- examples/LEMS_c302_B_IClamp.xml | 2 +- examples/LEMS_c302_B_Muscles.xml | 2 +- examples/LEMS_c302_B_Oscillator.xml | 2 +- examples/LEMS_c302_B_Pharyngeal.xml | 2 +- examples/LEMS_c302_B_Social.xml | 2 +- examples/LEMS_c302_B_Syns.xml | 2 +- examples/LEMS_c302_C0_Full.xml | 2 +- examples/LEMS_c302_C0_IClamp.xml | 2 +- examples/LEMS_c302_C0_Muscles.xml | 2 +- examples/LEMS_c302_C0_Oscillator.xml | 2 +- examples/LEMS_c302_C0_Pharyngeal.xml | 2 +- examples/LEMS_c302_C0_Social.xml | 2 +- examples/LEMS_c302_C0_Syns.xml | 2 +- examples/LEMS_c302_C1_Full.xml | 2 +- examples/LEMS_c302_C1_IClamp.xml | 2 +- examples/LEMS_c302_C1_Muscles.xml | 2 +- examples/LEMS_c302_C1_Oscillator.xml | 2 +- examples/LEMS_c302_C1_Pharyngeal.xml | 2 +- examples/LEMS_c302_C1_Social.xml | 2 +- examples/LEMS_c302_C1_Syns.xml | 2 +- examples/LEMS_c302_C2_FW.xml | 2 +- examples/LEMS_c302_C2_Full.xml | 2 +- examples/LEMS_c302_C2_IClamp.xml | 2 +- examples/LEMS_c302_C2_Muscles.xml | 2 +- examples/LEMS_c302_C2_Oscillator.xml | 2 +- examples/LEMS_c302_C2_Pharyngeal.xml | 2 +- examples/LEMS_c302_C2_Social.xml | 2 +- examples/LEMS_c302_C2_Syns.xml | 2 +- examples/LEMS_c302_C_Full.xml | 2 +- examples/LEMS_c302_C_IClamp.xml | 2 +- examples/LEMS_c302_C_Muscles.xml | 2 +- examples/LEMS_c302_C_Oscillator.xml | 2 +- examples/LEMS_c302_C_Pharyngeal.xml | 2 +- examples/LEMS_c302_C_Social.xml | 2 +- examples/LEMS_c302_C_Syns.xml | 2 +- examples/LEMS_c302_D1_Full.xml | 2 +- examples/LEMS_c302_D1_IClamp.xml | 2 +- examples/LEMS_c302_D1_Muscles.xml | 2 +- examples/LEMS_c302_D1_Oscillator.xml | 2 +- examples/LEMS_c302_D1_Pharyngeal.xml | 2 +- examples/LEMS_c302_D1_Social.xml | 2 +- examples/LEMS_c302_D1_Syns.xml | 2 +- examples/LEMS_c302_D_Full.xml | 2 +- examples/LEMS_c302_D_IClamp.xml | 2 +- examples/LEMS_c302_D_Muscles.xml | 2 +- examples/LEMS_c302_D_Oscillator.xml | 2 +- examples/LEMS_c302_D_Pharyngeal.xml | 2 +- examples/LEMS_c302_D_Social.xml | 2 +- examples/LEMS_c302_D_Syns.xml | 2 +- examples/c302_A_Full.net.nml | 2 +- examples/c302_A_IClamp.net.nml | 2 +- examples/c302_A_Muscles.net.nml | 2 +- examples/c302_A_Oscillator.net.nml | 2 +- examples/c302_A_Pharyngeal.net.nml | 2 +- examples/c302_A_Social.net.nml | 2 +- examples/c302_A_Syns.net.nml | 2 +- examples/c302_B_Full.net.nml | 2 +- examples/c302_B_IClamp.net.nml | 2 +- examples/c302_B_Muscles.net.nml | 2 +- examples/c302_B_Oscillator.net.nml | 2 +- examples/c302_B_Pharyngeal.net.nml | 2 +- examples/c302_B_Social.net.nml | 2 +- examples/c302_B_Syns.net.nml | 2 +- examples/c302_C0_Full.net.nml | 2 +- examples/c302_C0_IClamp.net.nml | 2 +- examples/c302_C0_Muscles.net.nml | 2 +- examples/c302_C0_Oscillator.net.nml | 2 +- examples/c302_C0_Pharyngeal.net.nml | 2 +- examples/c302_C0_Social.net.nml | 2 +- examples/c302_C0_Syns.net.nml | 2 +- examples/c302_C1_Full.net.nml | 2 +- examples/c302_C1_IClamp.net.nml | 2 +- examples/c302_C1_Muscles.net.nml | 2 +- examples/c302_C1_Oscillator.net.nml | 2 +- examples/c302_C1_Pharyngeal.net.nml | 2 +- examples/c302_C1_Social.net.nml | 2 +- examples/c302_C1_Syns.net.nml | 2 +- examples/c302_C2_FW.net.nml | 2 +- examples/c302_C2_Full.net.nml | 2 +- examples/c302_C2_IClamp.net.nml | 2 +- examples/c302_C2_Muscles.net.nml | 2 +- examples/c302_C2_Oscillator.net.nml | 2 +- examples/c302_C2_Pharyngeal.net.nml | 2 +- examples/c302_C2_Social.net.nml | 2 +- examples/c302_C2_Syns.net.nml | 2 +- examples/c302_C_Full.net.nml | 2 +- examples/c302_C_IClamp.net.nml | 2 +- examples/c302_C_Muscles.net.nml | 2 +- examples/c302_C_Oscillator.net.nml | 2 +- examples/c302_C_Pharyngeal.net.nml | 2 +- examples/c302_C_Social.net.nml | 2 +- examples/c302_C_Syns.net.nml | 2 +- examples/c302_D1_Full.net.nml | 2 +- examples/c302_D1_IClamp.net.nml | 2 +- examples/c302_D1_Muscles.net.nml | 2 +- examples/c302_D1_Oscillator.net.nml | 2 +- examples/c302_D1_Pharyngeal.net.nml | 2 +- examples/c302_D1_Social.net.nml | 2 +- examples/c302_D1_Syns.net.nml | 2 +- examples/c302_D_Full.net.nml | 2 +- examples/c302_D_IClamp.net.nml | 2 +- examples/c302_D_Muscles.net.nml | 2 +- examples/c302_D_Oscillator.net.nml | 2 +- examples/c302_D_Pharyngeal.net.nml | 2 +- examples/c302_D_Social.net.nml | 2 +- examples/c302_D_Syns.net.nml | 2 +- 118 files changed, 115 insertions(+), 118 deletions(-) diff --git a/c302/NeuroMLUtilities.py b/c302/NeuroMLUtilities.py index 11d730f7..37db9aa7 100644 --- a/c302/NeuroMLUtilities.py +++ b/c302/NeuroMLUtilities.py @@ -7,7 +7,6 @@ ############################################################ - from c302.ConnectomeReader import analyse_connections diff --git a/c302/__version__.py b/c302/__version__.py index 8088f751..3e2f46a3 100644 --- a/c302/__version__.py +++ b/c302/__version__.py @@ -1 +1 @@ -__version__ = "0.8.1" +__version__ = "0.9.0" diff --git a/c302/c302_info.py b/c302/c302_info.py index 3982ddef..1c63b7a4 100644 --- a/c302/c302_info.py +++ b/c302/c302_info.py @@ -1,4 +1,3 @@ - import c302 diff --git a/c302/parameters_D1.py b/c302/parameters_D1.py index 00d9ced8..0c09534a 100644 --- a/c302/parameters_D1.py +++ b/c302/parameters_D1.py @@ -13,7 +13,6 @@ """ - from neuroml import GapJunction from c302.parameters_D import ParameterisedModel as ParameterisedModel_D diff --git a/examples/LEMS_c302_A_Full.xml b/examples/LEMS_c302_A_Full.xml index b1f1ae9c..031a0a0d 100644 --- a/examples/LEMS_c302_A_Full.xml +++ b/examples/LEMS_c302_A_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_A_IClamp.xml b/examples/LEMS_c302_A_IClamp.xml index f0766a1c..5a267a14 100644 --- a/examples/LEMS_c302_A_IClamp.xml +++ b/examples/LEMS_c302_A_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_A_Muscles.xml b/examples/LEMS_c302_A_Muscles.xml index 6d20835a..e38ac72e 100644 --- a/examples/LEMS_c302_A_Muscles.xml +++ b/examples/LEMS_c302_A_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_A_Oscillator.xml b/examples/LEMS_c302_A_Oscillator.xml index dec19c06..629a1e84 100644 --- a/examples/LEMS_c302_A_Oscillator.xml +++ b/examples/LEMS_c302_A_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_A_Pharyngeal.xml b/examples/LEMS_c302_A_Pharyngeal.xml index 753a5c4a..41b9d63b 100644 --- a/examples/LEMS_c302_A_Pharyngeal.xml +++ b/examples/LEMS_c302_A_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_A_Social.xml b/examples/LEMS_c302_A_Social.xml index fd4dbcae..e2080ebf 100644 --- a/examples/LEMS_c302_A_Social.xml +++ b/examples/LEMS_c302_A_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_A_Syns.xml b/examples/LEMS_c302_A_Syns.xml index 0dd73142..5d64cbf6 100644 --- a/examples/LEMS_c302_A_Syns.xml +++ b/examples/LEMS_c302_A_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] diff --git a/examples/LEMS_c302_B_Full.xml b/examples/LEMS_c302_B_Full.xml index 987ede35..d96a06b9 100644 --- a/examples/LEMS_c302_B_Full.xml +++ b/examples/LEMS_c302_B_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_B_IClamp.xml b/examples/LEMS_c302_B_IClamp.xml index 098f2ac9..9b24884a 100644 --- a/examples/LEMS_c302_B_IClamp.xml +++ b/examples/LEMS_c302_B_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_B_Muscles.xml b/examples/LEMS_c302_B_Muscles.xml index b730185c..60b6d42b 100644 --- a/examples/LEMS_c302_B_Muscles.xml +++ b/examples/LEMS_c302_B_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_B_Oscillator.xml b/examples/LEMS_c302_B_Oscillator.xml index 4c5e1224..2edcdf10 100644 --- a/examples/LEMS_c302_B_Oscillator.xml +++ b/examples/LEMS_c302_B_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_B_Pharyngeal.xml b/examples/LEMS_c302_B_Pharyngeal.xml index c2250e30..3cd196a7 100644 --- a/examples/LEMS_c302_B_Pharyngeal.xml +++ b/examples/LEMS_c302_B_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_B_Social.xml b/examples/LEMS_c302_B_Social.xml index c394505f..fe0f1108 100644 --- a/examples/LEMS_c302_B_Social.xml +++ b/examples/LEMS_c302_B_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_B_Syns.xml b/examples/LEMS_c302_B_Syns.xml index de70bf33..22719fd3 100644 --- a/examples/LEMS_c302_B_Syns.xml +++ b/examples/LEMS_c302_B_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_C0_Full.xml b/examples/LEMS_c302_C0_Full.xml index 99bda737..7c4d6445 100644 --- a/examples/LEMS_c302_C0_Full.xml +++ b/examples/LEMS_c302_C0_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_C0_IClamp.xml b/examples/LEMS_c302_C0_IClamp.xml index ca939bda..bbb8dbc3 100644 --- a/examples/LEMS_c302_C0_IClamp.xml +++ b/examples/LEMS_c302_C0_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_C0_Muscles.xml b/examples/LEMS_c302_C0_Muscles.xml index 9880e8a0..1ad3c2b6 100644 --- a/examples/LEMS_c302_C0_Muscles.xml +++ b/examples/LEMS_c302_C0_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_C0_Oscillator.xml b/examples/LEMS_c302_C0_Oscillator.xml index 08094d0f..edaa76f6 100644 --- a/examples/LEMS_c302_C0_Oscillator.xml +++ b/examples/LEMS_c302_C0_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_C0_Pharyngeal.xml b/examples/LEMS_c302_C0_Pharyngeal.xml index 9c752744..55ce57af 100644 --- a/examples/LEMS_c302_C0_Pharyngeal.xml +++ b/examples/LEMS_c302_C0_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_C0_Social.xml b/examples/LEMS_c302_C0_Social.xml index c84bb4bd..f60ed969 100644 --- a/examples/LEMS_c302_C0_Social.xml +++ b/examples/LEMS_c302_C0_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_C0_Syns.xml b/examples/LEMS_c302_C0_Syns.xml index ff8e250b..a44b58a7 100644 --- a/examples/LEMS_c302_C0_Syns.xml +++ b/examples/LEMS_c302_C0_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_C1_Full.xml b/examples/LEMS_c302_C1_Full.xml index bf73a203..8e27e424 100644 --- a/examples/LEMS_c302_C1_Full.xml +++ b/examples/LEMS_c302_C1_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_C1_IClamp.xml b/examples/LEMS_c302_C1_IClamp.xml index 5805abea..fb89b632 100644 --- a/examples/LEMS_c302_C1_IClamp.xml +++ b/examples/LEMS_c302_C1_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_C1_Muscles.xml b/examples/LEMS_c302_C1_Muscles.xml index 7110c6a6..7bcca2f0 100644 --- a/examples/LEMS_c302_C1_Muscles.xml +++ b/examples/LEMS_c302_C1_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_C1_Oscillator.xml b/examples/LEMS_c302_C1_Oscillator.xml index 04ec2555..8fe4fb86 100644 --- a/examples/LEMS_c302_C1_Oscillator.xml +++ b/examples/LEMS_c302_C1_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_C1_Pharyngeal.xml b/examples/LEMS_c302_C1_Pharyngeal.xml index 9a90f370..22f3bbd8 100644 --- a/examples/LEMS_c302_C1_Pharyngeal.xml +++ b/examples/LEMS_c302_C1_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_C1_Social.xml b/examples/LEMS_c302_C1_Social.xml index 2215b768..df7e5356 100644 --- a/examples/LEMS_c302_C1_Social.xml +++ b/examples/LEMS_c302_C1_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_C1_Syns.xml b/examples/LEMS_c302_C1_Syns.xml index 0adc0f4e..8cf78f21 100644 --- a/examples/LEMS_c302_C1_Syns.xml +++ b/examples/LEMS_c302_C1_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_C2_FW.xml b/examples/LEMS_c302_C2_FW.xml index 0af23d58..6697236f 100644 --- a/examples/LEMS_c302_C2_FW.xml +++ b/examples/LEMS_c302_C2_FW.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] diff --git a/examples/LEMS_c302_C2_Full.xml b/examples/LEMS_c302_C2_Full.xml index 7f6e7303..578b95ee 100644 --- a/examples/LEMS_c302_C2_Full.xml +++ b/examples/LEMS_c302_C2_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_C2_IClamp.xml b/examples/LEMS_c302_C2_IClamp.xml index 096f46b8..667139d0 100644 --- a/examples/LEMS_c302_C2_IClamp.xml +++ b/examples/LEMS_c302_C2_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_C2_Muscles.xml b/examples/LEMS_c302_C2_Muscles.xml index 61fe380a..5c3a3f54 100644 --- a/examples/LEMS_c302_C2_Muscles.xml +++ b/examples/LEMS_c302_C2_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_C2_Oscillator.xml b/examples/LEMS_c302_C2_Oscillator.xml index 35fb9fde..97377f28 100644 --- a/examples/LEMS_c302_C2_Oscillator.xml +++ b/examples/LEMS_c302_C2_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_C2_Pharyngeal.xml b/examples/LEMS_c302_C2_Pharyngeal.xml index feaca7f6..22139732 100644 --- a/examples/LEMS_c302_C2_Pharyngeal.xml +++ b/examples/LEMS_c302_C2_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_C2_Social.xml b/examples/LEMS_c302_C2_Social.xml index 9ef72a03..ea6f1b6d 100644 --- a/examples/LEMS_c302_C2_Social.xml +++ b/examples/LEMS_c302_C2_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_C2_Syns.xml b/examples/LEMS_c302_C2_Syns.xml index 860e819d..ca31dc1c 100644 --- a/examples/LEMS_c302_C2_Syns.xml +++ b/examples/LEMS_c302_C2_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_C_Full.xml b/examples/LEMS_c302_C_Full.xml index 7b616749..f66fa9dd 100644 --- a/examples/LEMS_c302_C_Full.xml +++ b/examples/LEMS_c302_C_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_C_IClamp.xml b/examples/LEMS_c302_C_IClamp.xml index 0777afd6..eb81e11f 100644 --- a/examples/LEMS_c302_C_IClamp.xml +++ b/examples/LEMS_c302_C_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_C_Muscles.xml b/examples/LEMS_c302_C_Muscles.xml index 459bf6a5..a5b84316 100644 --- a/examples/LEMS_c302_C_Muscles.xml +++ b/examples/LEMS_c302_C_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_C_Oscillator.xml b/examples/LEMS_c302_C_Oscillator.xml index f7740a1c..6f9d0bfc 100644 --- a/examples/LEMS_c302_C_Oscillator.xml +++ b/examples/LEMS_c302_C_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_C_Pharyngeal.xml b/examples/LEMS_c302_C_Pharyngeal.xml index c35482b9..1ddaed25 100644 --- a/examples/LEMS_c302_C_Pharyngeal.xml +++ b/examples/LEMS_c302_C_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_C_Social.xml b/examples/LEMS_c302_C_Social.xml index bb846e70..59be25de 100644 --- a/examples/LEMS_c302_C_Social.xml +++ b/examples/LEMS_c302_C_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_C_Syns.xml b/examples/LEMS_c302_C_Syns.xml index 4e37c855..3ab946ab 100644 --- a/examples/LEMS_c302_C_Syns.xml +++ b/examples/LEMS_c302_C_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_D1_Full.xml b/examples/LEMS_c302_D1_Full.xml index 003e491a..40930a94 100644 --- a/examples/LEMS_c302_D1_Full.xml +++ b/examples/LEMS_c302_D1_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_D1_IClamp.xml b/examples/LEMS_c302_D1_IClamp.xml index 0ba3977a..959e0022 100644 --- a/examples/LEMS_c302_D1_IClamp.xml +++ b/examples/LEMS_c302_D1_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_D1_Muscles.xml b/examples/LEMS_c302_D1_Muscles.xml index 629276b2..4e0da7ee 100644 --- a/examples/LEMS_c302_D1_Muscles.xml +++ b/examples/LEMS_c302_D1_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_D1_Oscillator.xml b/examples/LEMS_c302_D1_Oscillator.xml index dd715f62..d71900f5 100644 --- a/examples/LEMS_c302_D1_Oscillator.xml +++ b/examples/LEMS_c302_D1_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_D1_Pharyngeal.xml b/examples/LEMS_c302_D1_Pharyngeal.xml index 4c0b98d2..c294751f 100644 --- a/examples/LEMS_c302_D1_Pharyngeal.xml +++ b/examples/LEMS_c302_D1_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_D1_Social.xml b/examples/LEMS_c302_D1_Social.xml index f5261d35..83a181ef 100644 --- a/examples/LEMS_c302_D1_Social.xml +++ b/examples/LEMS_c302_D1_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_D1_Syns.xml b/examples/LEMS_c302_D1_Syns.xml index f6ecbcf0..9ade2386 100644 --- a/examples/LEMS_c302_D1_Syns.xml +++ b/examples/LEMS_c302_D1_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/LEMS_c302_D_Full.xml b/examples/LEMS_c302_D_Full.xml index 939f370f..b969ba85 100644 --- a/examples/LEMS_c302_D_Full.xml +++ b/examples/LEMS_c302_D_Full.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/LEMS_c302_D_IClamp.xml b/examples/LEMS_c302_D_IClamp.xml index 14c7d24c..835e6543 100644 --- a/examples/LEMS_c302_D_IClamp.xml +++ b/examples/LEMS_c302_D_IClamp.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/LEMS_c302_D_Muscles.xml b/examples/LEMS_c302_D_Muscles.xml index adbb3c2b..28ec43a0 100644 --- a/examples/LEMS_c302_D_Muscles.xml +++ b/examples/LEMS_c302_D_Muscles.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/LEMS_c302_D_Oscillator.xml b/examples/LEMS_c302_D_Oscillator.xml index f90ddbf7..accdafe0 100644 --- a/examples/LEMS_c302_D_Oscillator.xml +++ b/examples/LEMS_c302_D_Oscillator.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/LEMS_c302_D_Pharyngeal.xml b/examples/LEMS_c302_D_Pharyngeal.xml index 59e95fd9..ecab182b 100644 --- a/examples/LEMS_c302_D_Pharyngeal.xml +++ b/examples/LEMS_c302_D_Pharyngeal.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/LEMS_c302_D_Social.xml b/examples/LEMS_c302_D_Social.xml index 4304aaee..1cfd1795 100644 --- a/examples/LEMS_c302_D_Social.xml +++ b/examples/LEMS_c302_D_Social.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/LEMS_c302_D_Syns.xml b/examples/LEMS_c302_D_Syns.xml index 20e29d64..47605e3e 100644 --- a/examples/LEMS_c302_D_Syns.xml +++ b/examples/LEMS_c302_D_Syns.xml @@ -6,7 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_A_Full.net.nml b/examples/c302_A_Full.net.nml index 3a1c548f..1694923d 100644 --- a/examples/c302_A_Full.net.nml +++ b/examples/c302_A_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_A_IClamp.net.nml b/examples/c302_A_IClamp.net.nml index 817284f4..0dc91abe 100644 --- a/examples/c302_A_IClamp.net.nml +++ b/examples/c302_A_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_A_Muscles.net.nml b/examples/c302_A_Muscles.net.nml index 989cba06..c37541dd 100644 --- a/examples/c302_A_Muscles.net.nml +++ b/examples/c302_A_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_A_Oscillator.net.nml b/examples/c302_A_Oscillator.net.nml index cb32ea23..de5dae77 100644 --- a/examples/c302_A_Oscillator.net.nml +++ b/examples/c302_A_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_A_Pharyngeal.net.nml b/examples/c302_A_Pharyngeal.net.nml index b4e0a2f3..0cb7f9b6 100644 --- a/examples/c302_A_Pharyngeal.net.nml +++ b/examples/c302_A_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_A_Social.net.nml b/examples/c302_A_Social.net.nml index e70731e2..a2454827 100644 --- a/examples/c302_A_Social.net.nml +++ b/examples/c302_A_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_A_Syns.net.nml b/examples/c302_A_Syns.net.nml index 6169ea07..22411e1c 100644 --- a/examples/c302_A_Syns.net.nml +++ b/examples/c302_A_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] diff --git a/examples/c302_B_Full.net.nml b/examples/c302_B_Full.net.nml index 398ff8a6..7c5cb2e6 100644 --- a/examples/c302_B_Full.net.nml +++ b/examples/c302_B_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_B_IClamp.net.nml b/examples/c302_B_IClamp.net.nml index 0bba5a62..8e6b14d5 100644 --- a/examples/c302_B_IClamp.net.nml +++ b/examples/c302_B_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_B_Muscles.net.nml b/examples/c302_B_Muscles.net.nml index 03d3b72d..4dcde20c 100644 --- a/examples/c302_B_Muscles.net.nml +++ b/examples/c302_B_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_B_Oscillator.net.nml b/examples/c302_B_Oscillator.net.nml index 226488bc..a5fadabc 100644 --- a/examples/c302_B_Oscillator.net.nml +++ b/examples/c302_B_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_B_Pharyngeal.net.nml b/examples/c302_B_Pharyngeal.net.nml index 33797caf..8ce33726 100644 --- a/examples/c302_B_Pharyngeal.net.nml +++ b/examples/c302_B_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_B_Social.net.nml b/examples/c302_B_Social.net.nml index e9514cbd..aa4b8838 100644 --- a/examples/c302_B_Social.net.nml +++ b/examples/c302_B_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_B_Syns.net.nml b/examples/c302_B_Syns.net.nml index d793ec2c..a3e5c037 100644 --- a/examples/c302_B_Syns.net.nml +++ b/examples/c302_B_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_C0_Full.net.nml b/examples/c302_C0_Full.net.nml index 1a7b297a..14864f64 100644 --- a/examples/c302_C0_Full.net.nml +++ b/examples/c302_C0_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_C0_IClamp.net.nml b/examples/c302_C0_IClamp.net.nml index ae73982e..9e6b81d2 100644 --- a/examples/c302_C0_IClamp.net.nml +++ b/examples/c302_C0_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_C0_Muscles.net.nml b/examples/c302_C0_Muscles.net.nml index f1afcb2d..7a8793d1 100644 --- a/examples/c302_C0_Muscles.net.nml +++ b/examples/c302_C0_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_C0_Oscillator.net.nml b/examples/c302_C0_Oscillator.net.nml index 1204b17c..6a15d27e 100644 --- a/examples/c302_C0_Oscillator.net.nml +++ b/examples/c302_C0_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_C0_Pharyngeal.net.nml b/examples/c302_C0_Pharyngeal.net.nml index 36383bcb..34935bf1 100644 --- a/examples/c302_C0_Pharyngeal.net.nml +++ b/examples/c302_C0_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_C0_Social.net.nml b/examples/c302_C0_Social.net.nml index 2404278e..a1af5904 100644 --- a/examples/c302_C0_Social.net.nml +++ b/examples/c302_C0_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_C0_Syns.net.nml b/examples/c302_C0_Syns.net.nml index 469f4053..b75903f5 100644 --- a/examples/c302_C0_Syns.net.nml +++ b/examples/c302_C0_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_C1_Full.net.nml b/examples/c302_C1_Full.net.nml index 202115ae..fba68221 100644 --- a/examples/c302_C1_Full.net.nml +++ b/examples/c302_C1_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_C1_IClamp.net.nml b/examples/c302_C1_IClamp.net.nml index d87ec37c..d82b20c8 100644 --- a/examples/c302_C1_IClamp.net.nml +++ b/examples/c302_C1_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_C1_Muscles.net.nml b/examples/c302_C1_Muscles.net.nml index c7a886c4..5d41a1b5 100644 --- a/examples/c302_C1_Muscles.net.nml +++ b/examples/c302_C1_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_C1_Oscillator.net.nml b/examples/c302_C1_Oscillator.net.nml index dc832221..05351cbc 100644 --- a/examples/c302_C1_Oscillator.net.nml +++ b/examples/c302_C1_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_C1_Pharyngeal.net.nml b/examples/c302_C1_Pharyngeal.net.nml index 221ec3da..cf8930ac 100644 --- a/examples/c302_C1_Pharyngeal.net.nml +++ b/examples/c302_C1_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_C1_Social.net.nml b/examples/c302_C1_Social.net.nml index c228d11e..e649aee0 100644 --- a/examples/c302_C1_Social.net.nml +++ b/examples/c302_C1_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_C1_Syns.net.nml b/examples/c302_C1_Syns.net.nml index d9814214..bf719f70 100644 --- a/examples/c302_C1_Syns.net.nml +++ b/examples/c302_C1_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_C2_FW.net.nml b/examples/c302_C2_FW.net.nml index e4faadfb..7ab9252e 100644 --- a/examples/c302_C2_FW.net.nml +++ b/examples/c302_C2_FW.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] diff --git a/examples/c302_C2_Full.net.nml b/examples/c302_C2_Full.net.nml index 0d890f6c..926428de 100644 --- a/examples/c302_C2_Full.net.nml +++ b/examples/c302_C2_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_C2_IClamp.net.nml b/examples/c302_C2_IClamp.net.nml index 2b242cfe..a797a391 100644 --- a/examples/c302_C2_IClamp.net.nml +++ b/examples/c302_C2_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_C2_Muscles.net.nml b/examples/c302_C2_Muscles.net.nml index 78f5eef7..ef076ee8 100644 --- a/examples/c302_C2_Muscles.net.nml +++ b/examples/c302_C2_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_C2_Oscillator.net.nml b/examples/c302_C2_Oscillator.net.nml index dc005ee2..0ced9ca0 100644 --- a/examples/c302_C2_Oscillator.net.nml +++ b/examples/c302_C2_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_C2_Pharyngeal.net.nml b/examples/c302_C2_Pharyngeal.net.nml index 9a85ec82..24322919 100644 --- a/examples/c302_C2_Pharyngeal.net.nml +++ b/examples/c302_C2_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_C2_Social.net.nml b/examples/c302_C2_Social.net.nml index 24be7dcc..a2e866a2 100644 --- a/examples/c302_C2_Social.net.nml +++ b/examples/c302_C2_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_C2_Syns.net.nml b/examples/c302_C2_Syns.net.nml index 5923c474..a6980d4d 100644 --- a/examples/c302_C2_Syns.net.nml +++ b/examples/c302_C2_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_C_Full.net.nml b/examples/c302_C_Full.net.nml index 8da5e705..b9fb71e7 100644 --- a/examples/c302_C_Full.net.nml +++ b/examples/c302_C_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_C_IClamp.net.nml b/examples/c302_C_IClamp.net.nml index ad8d9b17..4bd0af13 100644 --- a/examples/c302_C_IClamp.net.nml +++ b/examples/c302_C_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_C_Muscles.net.nml b/examples/c302_C_Muscles.net.nml index a285b0d9..7aa9f27d 100644 --- a/examples/c302_C_Muscles.net.nml +++ b/examples/c302_C_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_C_Oscillator.net.nml b/examples/c302_C_Oscillator.net.nml index fb0ba8ec..a2ee9103 100644 --- a/examples/c302_C_Oscillator.net.nml +++ b/examples/c302_C_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_C_Pharyngeal.net.nml b/examples/c302_C_Pharyngeal.net.nml index 781b5094..027e0033 100644 --- a/examples/c302_C_Pharyngeal.net.nml +++ b/examples/c302_C_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_C_Social.net.nml b/examples/c302_C_Social.net.nml index 9b102f5c..5923535e 100644 --- a/examples/c302_C_Social.net.nml +++ b/examples/c302_C_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_C_Syns.net.nml b/examples/c302_C_Syns.net.nml index 9042eb68..94dc2dbc 100644 --- a/examples/c302_C_Syns.net.nml +++ b/examples/c302_C_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_D1_Full.net.nml b/examples/c302_D1_Full.net.nml index ed5a3947..ffe47de9 100644 --- a/examples/c302_D1_Full.net.nml +++ b/examples/c302_D1_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_D1_IClamp.net.nml b/examples/c302_D1_IClamp.net.nml index 6965ab00..35ec6b77 100644 --- a/examples/c302_D1_IClamp.net.nml +++ b/examples/c302_D1_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_D1_Muscles.net.nml b/examples/c302_D1_Muscles.net.nml index 9b889fca..b2708e02 100644 --- a/examples/c302_D1_Muscles.net.nml +++ b/examples/c302_D1_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_D1_Oscillator.net.nml b/examples/c302_D1_Oscillator.net.nml index 67040e4e..a40e9c76 100644 --- a/examples/c302_D1_Oscillator.net.nml +++ b/examples/c302_D1_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_D1_Pharyngeal.net.nml b/examples/c302_D1_Pharyngeal.net.nml index abab5a36..8f9dd82b 100644 --- a/examples/c302_D1_Pharyngeal.net.nml +++ b/examples/c302_D1_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_D1_Social.net.nml b/examples/c302_D1_Social.net.nml index 57660e63..edfc7314 100644 --- a/examples/c302_D1_Social.net.nml +++ b/examples/c302_D1_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_D1_Syns.net.nml b/examples/c302_D1_Syns.net.nml index ce674375..5707721a 100644 --- a/examples/c302_D1_Syns.net.nml +++ b/examples/c302_D1_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] diff --git a/examples/c302_D_Full.net.nml b/examples/c302_D_Full.net.nml index a922428a..a9cd98f3 100644 --- a/examples/c302_D_Full.net.nml +++ b/examples/c302_D_Full.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: All cells diff --git a/examples/c302_D_IClamp.net.nml b/examples/c302_D_IClamp.net.nml index a10e2b57..b1e57da0 100644 --- a/examples/c302_D_IClamp.net.nml +++ b/examples/c302_D_IClamp.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['ADAL', 'PVCL'] diff --git a/examples/c302_D_Muscles.net.nml b/examples/c302_D_Muscles.net.nml index 07921492..cd681f6e 100644 --- a/examples/c302_D_Muscles.net.nml +++ b/examples/c302_D_Muscles.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] diff --git a/examples/c302_D_Oscillator.net.nml b/examples/c302_D_Oscillator.net.nml index cad2b0f6..ba3a4bd9 100644 --- a/examples/c302_D_Oscillator.net.nml +++ b/examples/c302_D_Oscillator.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] diff --git a/examples/c302_D_Pharyngeal.net.nml b/examples/c302_D_Pharyngeal.net.nml index e14d7209..ccfbf659 100644 --- a/examples/c302_D_Pharyngeal.net.nml +++ b/examples/c302_D_Pharyngeal.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] diff --git a/examples/c302_D_Social.net.nml b/examples/c302_D_Social.net.nml index 4206d073..90c9ca5d 100644 --- a/examples/c302_D_Social.net.nml +++ b/examples/c302_D_Social.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] diff --git a/examples/c302_D_Syns.net.nml b/examples/c302_D_Syns.net.nml index ac07d428..8b7ee9f4 100644 --- a/examples/c302_D_Syns.net.nml +++ b/examples/c302_D_Syns.net.nml @@ -4,7 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.1 + c302 version: 0.9.0 owmeta version: - not installed - owmeta_core version: - not installed - Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL']