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[PRE REVIEW]: fuzzyclara: Efficient Medoid-based Clustering Algorithms for Large and Fuzzy Data #7609

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editorialbot opened this issue Dec 20, 2024 · 18 comments
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pre-review R TeX Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning

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editorialbot commented Dec 20, 2024

Submitting author: @bauer-alex (Alexander Bauer)
Repository: https://github.com/bauer-alex/fuzzyclara
Branch with paper.md (empty if default branch):
Version: v1.0.1
Editor: @kanishkan91
Reviewers: Pending
Managing EiC: Chris Vernon

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Thanks for submitting your paper to JOSS @bauer-alex. Currently, there isn't a JOSS editor assigned to your paper.

@bauer-alex if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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@editorialbot editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Dec 20, 2024
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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Software report:

github.com/AlDanial/cloc v 1.98  T=0.02 s (1453.6 files/s, 230190.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               22            691           1125           2289
Rmd                              2            108            144            312
Markdown                         3             41              6            210
YAML                             5             32              9            173
TeX                              1              9              0             77
-------------------------------------------------------------------------------
SUM:                            33            881           1284           3061
-------------------------------------------------------------------------------

Commit count by author:

    56	ri87nix
    54	bauer-alex
    28	Alex
    27	Maximilian Weigert
    16	MaxWeigert
    11	Jana Gauß
     4	Theresa Kriecherbauer

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1111/j.1654-1103.2010.01211.x is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Clustering large data sets
- No DOI given, and none found for title: cluster: Cluster Analysis Basics and Extensions
- No DOI given, and none found for title: qtcat: Quantitative Trait Cluster Association Test

❌ MISSING DOIs

- 10.2307/1269576 may be a valid DOI for title: Finding groups in data: an introduction to cluster...
- 10.1109/fuzzy.1999.790086 may be a valid DOI for title: A fuzzy relative of the k-medoids algorithm with a...
- 10.2307/2346743 may be a valid DOI for title: Interactive data analysis: a practical primer
- 10.1109/tkde.2002.1033770 may be a valid DOI for title: CLARANS: A method for clustering objects for spati...
- 10.32614/cran.package.fastkmedoids may be a valid DOI for title: fastkmedoids: Faster K-Medoids Clustering Algorith...
- 10.32614/rj-2019-017 may be a valid DOI for title: fclust: An R Package for Fuzzy Clustering

❌ INVALID DOIs

- None

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Paper file info:

📄 Wordcount for paper.md is 1409

✅ The paper includes a Statement of need section

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License info:

🟡 License found: Other (Check here for OSI approval)

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

Clustergram: Visualization and diagnostics for cluster analysis
Submitting author: @martinfleis
Handling editor: @csoneson (Active)
Reviewers: @csadorf, @gagolews
Similarity score: 0.7086

FuzzyClass: A family of Fuzzy and Non-Fuzzy probabilistic-based classifiers
Submitting author: @Jodavid
Handling editor: @ajstewartlang (Active)
Reviewers: @tianyi93, @MikeLydeamore
Similarity score: 0.6858

Akmedoids R package for generating directionally-homogeneous clusters of longitudinal data sets
Submitting author: @MAnalytics
Handling editor: @karthik (Retired)
Reviewers: @karthik, @njtierney
Similarity score: 0.6819

visxhclust: An R Shiny package for visual exploration of hierarchical clustering
Submitting author: @rhenkin
Handling editor: @osorensen (Active)
Reviewers: @jonjoncardoso, @wiljnich
Similarity score: 0.6623

pivmet: an R package proposing pivotal methods for consensus clustering and mixture modelling
Submitting author: @LeoEgidi
Handling editor: @skanwal (Active)
Reviewers: @adriancorrendo, @larryshamalama
Similarity score: 0.6505

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@bauer-alex
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Hi!
Two potential reviewers (based on their experience with R and the topic of cluster analysis) would be Matt Piekenbrock and amarkos.

@crvernon
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crvernon commented Jan 3, 2025

@editorialbot invite @kanishkan91 as editor

👋 @kanishkan91 are you able to take this one on as editor? Thanks!

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Invitation to edit this submission sent!

@crvernon
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crvernon commented Jan 3, 2025

@bauer-alex - while we wait on getting you an editor assigned, please try to get the word count of your paper down to around 1000 words. Thanks!

@kanishkan91
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@crvernon Just wrapped up an assignment, so I can edit this one. Feel free to assign me

@bauer-alex
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Thanks upfront to both of you for your efforts. Highly appreciated!

I now shortened the manuscript by over 250 words and integrated some reference doi's that editorialbot was hinting to. I hope you guys can work with the current manuscript, even if it's 100-150 words over the 1000 word limit. If you would be ok with this approach, I would first await the revision comments before further shortening it. But I can of course already now shorten it to 1000-1050 words if you prefer that.

@bauer-alex
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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

geocmeans: An R package for spatial fuzzy c-means
Submitting author: @JeremyGelb
Handling editor: @martinfleis (Active)
Reviewers: @ljwolf, @naeemkh
Similarity score: 0.7003

Akmedoids R package for generating directionally-homogeneous clusters of longitudinal data sets
Submitting author: @MAnalytics
Handling editor: @karthik (Retired)
Reviewers: @karthik, @njtierney
Similarity score: 0.6972

FuzzyClass: A family of Fuzzy and Non-Fuzzy probabilistic-based classifiers
Submitting author: @Jodavid
Handling editor: @ajstewartlang (Active)
Reviewers: @tianyi93, @MikeLydeamore
Similarity score: 0.6898

visxhclust: An R Shiny package for visual exploration of hierarchical clustering
Submitting author: @rhenkin
Handling editor: @osorensen (Active)
Reviewers: @jonjoncardoso, @wiljnich
Similarity score: 0.6801

pivmet: an R package proposing pivotal methods for consensus clustering and mixture modelling
Submitting author: @LeoEgidi
Handling editor: @skanwal (Active)
Reviewers: @adriancorrendo, @larryshamalama
Similarity score: 0.6795

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@crvernon
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crvernon commented Jan 6, 2025

@editorialbot assign @kanishkan91 as editor

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Assigned! @kanishkan91 is now the editor

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