diff --git a/benchmarks/cobra-cameo-merge-benchmarks-before-merge.ipynb b/benchmarks/cobra-cameo-merge-benchmarks-before-merge.ipynb
index bab9c1d98..64cfc5065 100644
--- a/benchmarks/cobra-cameo-merge-benchmarks-before-merge.ipynb
+++ b/benchmarks/cobra-cameo-merge-benchmarks-before-merge.ipynb
@@ -2,32 +2,27 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 2,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 1,
+   "metadata": {},
    "outputs": [],
    "source": [
     "import cobra\n",
-    "from cobra.io import read_sbml_model\n",
-    "from cobra.test import create_test_model\n",
+    "from cobra.io import read_sbml_model, load_model\n",
     "from cobra import Model"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 2,
+   "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "['/Users/niso/anaconda/envs/cameo3.4/lib/python3.4/site-packages/cobra']"
+       "['/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra']"
       ]
      },
-     "execution_count": 3,
+     "execution_count": 2,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -38,18 +33,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 3,
+   "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "'0.4.1'"
+       "'0.24.0'"
       ]
      },
-     "execution_count": 4,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -60,10 +53,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 4,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results = {}"
@@ -71,33 +62,39 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
-   "metadata": {
-    "collapsed": true
-   },
-   "outputs": [],
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "m = create_test_model('ecoli')"
+    "m = load_model('iJO1366')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 6,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "10 loops, best of 3: 67.9 ms per loop\n"
+      "12 s ± 1.45 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 10 loops, best of 3: 67.9 ms per loop>"
+       "<TimeitResult : 12 s ± 1.45 s per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
      "execution_count": 7,
@@ -115,9 +112,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['add_reaction'] = _"
@@ -126,21 +121,19 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "10 loops, best of 3: 28.2 ms per loop\n"
+      "565 ms ± 83 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 10 loops, best of 3: 28.2 ms per loop>"
+       "<TimeitResult : 565 ms ± 83 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
      "execution_count": 9,
@@ -157,9 +150,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['add_reactions'] = _"
@@ -167,32 +158,38 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 11,
+   "metadata": {},
    "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/core/group.py:148: UserWarning: need to pass in a list\n",
+      "  warn(\"need to pass in a list\")\n"
+     ]
+    },
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 913 ms per loop\n"
+      "7.06 s ± 368 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 913 ms per loop>"
+       "<TimeitResult : 7.06 s ± 368 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 15,
+     "execution_count": 11,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
     "%%timeit -o\n",
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")\n",
+    "model = load_model('iJO1366')\n",
     "for reaction in model.reactions:\n",
     "    model.remove_reactions([reaction])"
    ]
@@ -200,9 +197,7 @@
   {
    "cell_type": "code",
    "execution_count": 12,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['remove_reaction'] = _"
@@ -210,77 +205,85 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 13,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 589 ms per loop\n"
+      "291 ms ± 18.4 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 589 ms per loop>"
+       "<TimeitResult : 291 ms ± 18.4 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 8,
+     "execution_count": 13,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
     "%%timeit -o\n",
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")"
+    "model = load_model('e_coli_core')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 14,
+   "metadata": {},
    "outputs": [],
    "source": [
-    "benchmark_results['read_sbml_model'] = _"
+    "benchmark_results['load_model'] = _"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 15,
+   "metadata": {},
    "outputs": [],
    "source": [
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")"
+    "model = load_model('e_coli_core')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
+   "execution_count": 16,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "133 ms ± 5.07 ms per loop (mean ± std. dev. of 7 runs, 10 loops each)\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "<TimeitResult : 133 ms ± 5.07 ms per loop (mean ± std. dev. of 7 runs, 10 loops each)>"
+      ]
+     },
+     "execution_count": 16,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "%%timeit -o\n",
     "for reaction in model.reactions:\n",
     "    model.objective = reaction\n",
     "    solution = model.optimize()\n",
-    "    solution.f"
+    "    solution.objective_value"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 17,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['iteratete_all_reactions_set_objective_solve'] = _"
@@ -288,25 +291,23 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 18,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "10 loops, best of 3: 60.3 ms per loop\n"
+      "15.9 ms ± 1.55 ms per loop (mean ± std. dev. of 7 runs, 100 loops each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 10 loops, best of 3: 60.3 ms per loop>"
+       "<TimeitResult : 15.9 ms ± 1.55 ms per loop (mean ± std. dev. of 7 runs, 100 loops each)>"
       ]
      },
-     "execution_count": 13,
+     "execution_count": 18,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -318,10 +319,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 19,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['model_copy'] = _"
@@ -340,9 +339,9 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python [conda env:cameo3.4]",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
-   "name": "conda-env-cameo3.4-py"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -354,7 +353,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.4.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/benchmarks/cobra-cameo-merge-benchmarks.ipynb b/benchmarks/cobra-cameo-merge-benchmarks.ipynb
index 0742c6f29..e09ffe1cf 100644
--- a/benchmarks/cobra-cameo-merge-benchmarks.ipynb
+++ b/benchmarks/cobra-cameo-merge-benchmarks.ipynb
@@ -3,172 +3,23 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [
-    {
-     "data": {
-      "text/html": []
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "application/javascript": [
-       "\n",
-       "(function(global) {\n",
-       "  function now() {\n",
-       "    return new Date();\n",
-       "  }\n",
-       "\n",
-       "  var force = \"1\";\n",
-       "\n",
-       "  if (typeof (window._bokeh_onload_callbacks) === \"undefined\" || force !== \"\") {\n",
-       "    window._bokeh_onload_callbacks = [];\n",
-       "    window._bokeh_is_loading = undefined;\n",
-       "  }\n",
-       "\n",
-       "\n",
-       "  \n",
-       "  if (typeof (window._bokeh_timeout) === \"undefined\" || force !== \"\") {\n",
-       "    window._bokeh_timeout = Date.now() + 5000;\n",
-       "    window._bokeh_failed_load = false;\n",
-       "  }\n",
-       "\n",
-       "  var NB_LOAD_WARNING = {'data': {'text/html':\n",
-       "     \"<div style='background-color: #fdd'>\\n\"+\n",
-       "     \"<p>\\n\"+\n",
-       "     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
-       "     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
-       "     \"</p>\\n\"+\n",
-       "     \"<ul>\\n\"+\n",
-       "     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
-       "     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
-       "     \"</ul>\\n\"+\n",
-       "     \"<code>\\n\"+\n",
-       "     \"from bokeh.resources import INLINE\\n\"+\n",
-       "     \"output_notebook(resources=INLINE)\\n\"+\n",
-       "     \"</code>\\n\"+\n",
-       "     \"</div>\"}};\n",
-       "\n",
-       "  function display_loaded() {\n",
-       "    if (window.Bokeh !== undefined) {\n",
-       "      Bokeh.$(\"#\").text(\"BokehJS successfully loaded.\");\n",
-       "    } else if (Date.now() < window._bokeh_timeout) {\n",
-       "      setTimeout(display_loaded, 100)\n",
-       "    }\n",
-       "  }\n",
-       "\n",
-       "  function run_callbacks() {\n",
-       "    window._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
-       "    delete window._bokeh_onload_callbacks\n",
-       "    console.info(\"Bokeh: all callbacks have finished\");\n",
-       "  }\n",
-       "\n",
-       "  function load_libs(js_urls, callback) {\n",
-       "    window._bokeh_onload_callbacks.push(callback);\n",
-       "    if (window._bokeh_is_loading > 0) {\n",
-       "      console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
-       "      return null;\n",
-       "    }\n",
-       "    if (js_urls == null || js_urls.length === 0) {\n",
-       "      run_callbacks();\n",
-       "      return null;\n",
-       "    }\n",
-       "    console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
-       "    window._bokeh_is_loading = js_urls.length;\n",
-       "    for (var i = 0; i < js_urls.length; i++) {\n",
-       "      var url = js_urls[i];\n",
-       "      var s = document.createElement('script');\n",
-       "      s.src = url;\n",
-       "      s.async = false;\n",
-       "      s.onreadystatechange = s.onload = function() {\n",
-       "        window._bokeh_is_loading--;\n",
-       "        if (window._bokeh_is_loading === 0) {\n",
-       "          console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
-       "          run_callbacks()\n",
-       "        }\n",
-       "      };\n",
-       "      s.onerror = function() {\n",
-       "        console.warn(\"failed to load library \" + url);\n",
-       "      };\n",
-       "      console.log(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
-       "      document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
-       "    }\n",
-       "  };\n",
-       "\n",
-       "  var js_urls = ['https://cdn.pydata.org/bokeh/release/bokeh-0.12.2.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.2.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-compiler-0.12.2.min.js'];\n",
-       "\n",
-       "  var inline_js = [\n",
-       "    function(Bokeh) {\n",
-       "      Bokeh.set_log_level(\"info\");\n",
-       "    },\n",
-       "    \n",
-       "    function(Bokeh) {\n",
-       "      \n",
-       "      Bokeh.$(\"#5a10f400-90ee-41ca-8c98-41a150f2b7a8\").text(\"BokehJS is loading...\");\n",
-       "    },\n",
-       "    function(Bokeh) {\n",
-       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-0.12.2.min.css\");\n",
-       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.12.2.min.css\");\n",
-       "      console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.2.min.css\");\n",
-       "      Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.12.2.min.css\");\n",
-       "    }\n",
-       "  ];\n",
-       "\n",
-       "  function run_inline_js() {\n",
-       "    \n",
-       "    if ((window.Bokeh !== undefined) || (force === \"1\")) {\n",
-       "      for (var i = 0; i < inline_js.length; i++) {\n",
-       "        inline_js[i](window.Bokeh);\n",
-       "      }} else if (Date.now() < window._bokeh_timeout) {\n",
-       "      setTimeout(run_inline_js, 100);\n",
-       "    } else if (!window._bokeh_failed_load) {\n",
-       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
-       "      window._bokeh_failed_load = true;\n",
-       "    } else if (!force) {\n",
-       "      var cell = $(\"#\").parents('.cell').data().cell;\n",
-       "      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
-       "    }\n",
-       "\n",
-       "  }\n",
-       "\n",
-       "  if (window._bokeh_is_loading === 0) {\n",
-       "    console.log(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
-       "    run_inline_js();\n",
-       "  } else {\n",
-       "    load_libs(js_urls, function() {\n",
-       "      console.log(\"Bokeh: BokehJS plotting callback run at\", now());\n",
-       "      run_inline_js();\n",
-       "    });\n",
-       "  }\n",
-       "}(this));"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "metadata": {},
+   "outputs": [],
    "source": [
     "import cobra\n",
-    "from cobra.io import read_sbml_model\n",
-    "from cobra.test import create_test_model\n",
+    "from cobra.io import load_model\n",
     "from cobra import Model"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "['/Users/niso/Dev/cobrapy-fork/cobra']"
+       "['/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra']"
       ]
      },
      "execution_count": 2,
@@ -183,14 +34,12 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "'0.4.2b2.post32+gitf12ab3a'"
+       "'0.24.0'"
       ]
      },
      "execution_count": 3,
@@ -205,9 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results = {}"
@@ -216,20 +63,26 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "metadata": {
-    "collapsed": true
-   },
-   "outputs": [],
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "m = create_test_model('ecoli')"
+    "m = load_model('iJO1366')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 6,
+   "metadata": {},
    "outputs": [],
    "source": [
     "m.solver = 'glpk'"
@@ -237,25 +90,23 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 7,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 2.58 s per loop\n"
+      "11.3 s ± 1.26 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 2.58 s per loop>"
+       "<TimeitResult : 11.3 s ± 1.26 s per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 18,
+     "execution_count": 7,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -269,10 +120,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 8,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['add_reaction'] = _"
@@ -280,25 +129,23 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 9,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 1.79 s per loop\n"
+      "726 ms ± 33.2 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 1.79 s per loop>"
+       "<TimeitResult : 726 ms ± 33.2 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 20,
+     "execution_count": 9,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -311,10 +158,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 10,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['add_reactions'] = _"
@@ -322,42 +167,66 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 27,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 11,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 7.67 s per loop\n"
+      "4.82 s ± 585 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 7.67 s per loop>"
+       "<TimeitResult : 4.82 s ± 585 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 27,
+     "execution_count": 11,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
     "%%timeit -o\n",
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")\n",
+    "model = load_model('iJO1366')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "8.47 s ± 1.98 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "<TimeitResult : 8.47 s ± 1.98 s per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
+      ]
+     },
+     "execution_count": 12,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "%%timeit -o\n",
+    "model = load_model('iJO1366')\n",
     "for reaction in model.reactions:\n",
     "    model.remove_reactions([reaction])"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 28,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 13,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['remove_reaction'] = _"
@@ -365,41 +234,37 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 29,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 14,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 7.05 s per loop\n"
+      "7.93 s ± 508 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 7.05 s per loop>"
+       "<TimeitResult : 7.93 s ± 508 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 29,
+     "execution_count": 14,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
     "%%timeit -o\n",
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")\n",
+    "model = load_model('iJO1366')\n",
     "model.remove_reactions(model.reactions)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 28,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 15,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['remove_reactions'] = _"
@@ -407,48 +272,72 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 16,
+   "metadata": {},
    "outputs": [],
+   "source": [
+    "model = load_model('iJO1366')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 17,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "1min 20s ± 11.3 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "<TimeitResult : 1min 20s ± 11.3 s per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
+      ]
+     },
+     "execution_count": 17,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "%%timeit -o\n",
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")"
+    "for reaction in model.reactions:\n",
+    "    model.objective = reaction\n",
+    "    solution = model.optimize()\n",
+    "    solution.fluxes"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 18,
+   "metadata": {},
    "outputs": [],
    "source": [
-    "model = read_sbml_model(\"/Users/niso/Dev/cobrapy-fork/cobra/test/data/iJO1366.xml\")"
+    "benchmark_results['iterate_all_reactions_set_objective_optimize'] = _"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 24,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 19,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 13.7 s per loop\n"
+      "22 s ± 1.59 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 13.7 s per loop>"
+       "<TimeitResult : 22 s ± 1.59 s per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 24,
+     "execution_count": 19,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -457,42 +346,38 @@
     "%%timeit -o\n",
     "for reaction in model.reactions:\n",
     "    model.objective = reaction\n",
-    "    solution = model.solve()\n",
-    "    solution.f"
+    "    solution = model.slim_optimize() # If you only care about the flux of the objective\n",
+    "    solution"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 25,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 20,
+   "metadata": {},
    "outputs": [],
    "source": [
-    "benchmark_results['iteratete_all_reactions_set_objective_solve'] = _"
+    "benchmark_results['iterate_all_reactions_set_objective_slim_optimize'] = _"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
-   "metadata": {
-    "collapsed": false
-   },
+   "execution_count": 21,
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "1 loop, best of 3: 794 ms per loop\n"
+      "688 ms ± 88 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
      ]
     },
     {
      "data": {
       "text/plain": [
-       "<TimeitResult : 1 loop, best of 3: 794 ms per loop>"
+       "<TimeitResult : 688 ms ± 88 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)>"
       ]
      },
-     "execution_count": 13,
+     "execution_count": 21,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -504,10 +389,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 22,
+   "metadata": {},
    "outputs": [],
    "source": [
     "benchmark_results['model_copy'] = _"
@@ -526,9 +409,9 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python [conda env:cobra-merge]",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
-   "name": "conda-env-cobra-merge-py"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -540,7 +423,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.4.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/benchmarks/geometric_fba.ipynb b/benchmarks/geometric_fba.ipynb
index 033cad974..c46684cf5 100644
--- a/benchmarks/geometric_fba.ipynb
+++ b/benchmarks/geometric_fba.ipynb
@@ -22,26 +22,9 @@
    "cell_type": "code",
    "execution_count": 3,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "DEBUG:optlang.util:Gurobi python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/gurobipy\n",
-      "DEBUG:optlang.util:GLPK python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/swiglpk\n",
-      "DEBUG:optlang.util:Mosek python bindings not available.\n",
-      "DEBUG:optlang.util:CPLEX python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/cplex\n",
-      "DEBUG:optlang.util:Scipy solver not available\n",
-      "DEBUG:pip._internal.utils.misc:lzma module is not available\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: git\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: hg\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: svn\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: bzr\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
-    "from cobra.test import create_test_model"
+    "from cobra.io import load_model"
    ]
   },
   {
@@ -57,9 +40,26 @@
    "cell_type": "code",
    "execution_count": 5,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "INFO:cobra.core.model:The current solver interface glpk doesn't support setting the optimality tolerance.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "model = create_test_model(\"textbook\")"
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -459,7 +459,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -473,7 +473,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/benchmarks/parallel_fva.ipynb b/benchmarks/parallel_fva.ipynb
index 671ac376b..134af5725 100644
--- a/benchmarks/parallel_fva.ipynb
+++ b/benchmarks/parallel_fva.ipynb
@@ -24,7 +24,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from cobra.test import create_test_model"
+    "from cobra.io import load_model"
    ]
   },
   {
@@ -40,9 +40,26 @@
    "cell_type": "code",
    "execution_count": 5,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "INFO:cobra.core.model:The current solver interface glpk doesn't support setting the optimality tolerance.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "model = create_test_model(\"ecoli\")"
+    "model = load_model(\"iJO1366\")"
    ]
   },
   {
@@ -54,8 +71,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "CPU times: user 5.71 s, sys: 0 ns, total: 5.71 s\n",
-      "Wall time: 5.71 s\n"
+      "CPU times: user 7.15 s, sys: 119 ms, total: 7.27 s\n",
+      "Wall time: 7.55 s\n"
      ]
     },
     {
@@ -85,286 +102,36 @@
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
-       "      <th>DM_4CRSOL</th>\n",
+       "      <th>DM_4crsol_c</th>\n",
        "      <td>0.000208</td>\n",
        "      <td>0.000219</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_5DRIB</th>\n",
+       "      <th>DM_5drib_c</th>\n",
        "      <td>0.000210</td>\n",
        "      <td>0.112258</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_AACALD</th>\n",
+       "      <th>DM_aacald_c</th>\n",
        "      <td>0.000000</td>\n",
        "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_AMOB</th>\n",
+       "      <th>DM_amob_c</th>\n",
        "      <td>0.000002</td>\n",
        "      <td>0.000002</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_MTHTHF</th>\n",
+       "      <th>DM_mththf_c</th>\n",
        "      <td>0.000418</td>\n",
        "      <td>0.515309</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_OXAM</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>1.010167</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>Ec_biomass_iJO1366_WT_53p95M</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.049326</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>Ec_biomass_iJO1366_core_53p95M</th>\n",
-       "      <td>0.933253</td>\n",
-       "      <td>0.982372</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_12ppd__R_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.724815</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_12ppd__S_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.713997</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_14glucan_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_15dap_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.394750</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23camp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23ccmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23cgmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23cump_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23dappa_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_26dap__M_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_2ddglcn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_34dhpac_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3amp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3cmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3gmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hcinnm_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hpp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.631600</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hpppn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3ump_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_4abut_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.667183</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_4hoxpacd_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_5dglcn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.563929</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
        "      <th>...</th>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>VALTRS</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALabcpp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>15.790000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALt2rpp</th>\n",
-       "      <td>-15.790000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALtex</th>\n",
-       "      <td>-0.526333</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VPAMTr</th>\n",
-       "      <td>-999.605083</td>\n",
-       "      <td>999.457448</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>WCOS</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>X5PL3E</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XAND</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>1.263200</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>47.370000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANtex</th>\n",
-       "      <td>-0.644490</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANtpp</th>\n",
-       "      <td>-47.370000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XMPtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XPPT</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>11.842500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNH</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>11.842500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNt2rpp</th>\n",
-       "      <td>-0.302684</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNtex</th>\n",
-       "      <td>-0.302684</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLI1</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLI2</th>\n",
-       "      <td>-11.842500</td>\n",
-       "      <td>19.342500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLK</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLK2</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLUt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLUtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLabcpp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
        "      <th>ZN2abcpp</th>\n",
        "      <td>0.000000</td>\n",
        "      <td>11.842500</td>\n",
@@ -395,73 +162,23 @@
        "</div>"
       ],
       "text/plain": [
-       "                                   minimum     maximum\n",
-       "DM_4CRSOL                         0.000208    0.000219\n",
-       "DM_5DRIB                          0.000210    0.112258\n",
-       "DM_AACALD                         0.000000    0.000000\n",
-       "DM_AMOB                           0.000002    0.000002\n",
-       "DM_MTHTHF                         0.000418    0.515309\n",
-       "DM_OXAM                           0.000000    1.010167\n",
-       "Ec_biomass_iJO1366_WT_53p95M      0.000000    0.049326\n",
-       "Ec_biomass_iJO1366_core_53p95M    0.933253    0.982372\n",
-       "EX_12ppd__R_e                     0.000000    0.724815\n",
-       "EX_12ppd__S_e                     0.000000    0.713997\n",
-       "EX_14glucan_e                     0.000000    0.000000\n",
-       "EX_15dap_e                        0.000000    0.394750\n",
-       "EX_23camp_e                       0.000000    0.000000\n",
-       "EX_23ccmp_e                       0.000000    0.000000\n",
-       "EX_23cgmp_e                       0.000000    0.000000\n",
-       "EX_23cump_e                       0.000000    0.000000\n",
-       "EX_23dappa_e                      0.000000    0.000000\n",
-       "EX_26dap__M_e                     0.000000    0.000000\n",
-       "EX_2ddglcn_e                      0.000000    0.000000\n",
-       "EX_34dhpac_e                      0.000000    0.000000\n",
-       "EX_3amp_e                         0.000000    0.000000\n",
-       "EX_3cmp_e                         0.000000    0.000000\n",
-       "EX_3gmp_e                         0.000000    0.000000\n",
-       "EX_3hcinnm_e                      0.000000    0.000000\n",
-       "EX_3hpp_e                         0.000000    0.631600\n",
-       "EX_3hpppn_e                       0.000000    0.000000\n",
-       "EX_3ump_e                         0.000000    0.000000\n",
-       "EX_4abut_e                        0.000000    0.667183\n",
-       "EX_4hoxpacd_e                     0.000000    0.000000\n",
-       "EX_5dglcn_e                       0.000000    0.563929\n",
-       "...                                    ...         ...\n",
-       "VALTRS                            0.000000    0.000000\n",
-       "VALabcpp                          0.000000   15.790000\n",
-       "VALt2rpp                        -15.790000    0.000000\n",
-       "VALtex                           -0.526333    0.000000\n",
-       "VPAMTr                         -999.605083  999.457448\n",
-       "WCOS                              0.000000    0.000000\n",
-       "X5PL3E                            0.000000    0.000000\n",
-       "XAND                              0.000000    1.263200\n",
-       "XANt2pp                           0.000000   47.370000\n",
-       "XANtex                           -0.644490    0.000000\n",
-       "XANtpp                          -47.370000    0.000000\n",
-       "XMPtex                            0.000000    0.000000\n",
-       "XPPT                              0.000000   11.842500\n",
-       "XTSNH                             0.000000   11.842500\n",
-       "XTSNt2rpp                        -0.302684    0.000000\n",
-       "XTSNtex                          -0.302684    0.000000\n",
-       "XYLI1                             0.000000    0.000000\n",
-       "XYLI2                           -11.842500   19.342500\n",
-       "XYLK                              0.000000    0.000000\n",
-       "XYLK2                             0.000000    0.000000\n",
-       "XYLUt2pp                          0.000000    0.000000\n",
-       "XYLUtex                           0.000000    0.000000\n",
-       "XYLabcpp                          0.000000    0.000000\n",
-       "XYLt2pp                           0.000000    0.000000\n",
-       "XYLtex                            0.000000    0.000000\n",
-       "ZN2abcpp                          0.000000   11.842500\n",
-       "ZN2t3pp                           0.000000   47.370000\n",
-       "ZN2tpp                            0.000000   47.370318\n",
-       "ZNabcpp                           0.000000    9.474064\n",
-       "Zn2tex                            0.000318    0.000335\n",
+       "              minimum    maximum\n",
+       "DM_4crsol_c  0.000208   0.000219\n",
+       "DM_5drib_c   0.000210   0.112258\n",
+       "DM_aacald_c  0.000000   0.000000\n",
+       "DM_amob_c    0.000002   0.000002\n",
+       "DM_mththf_c  0.000418   0.515309\n",
+       "...               ...        ...\n",
+       "ZN2abcpp     0.000000  11.842500\n",
+       "ZN2t3pp      0.000000  47.370000\n",
+       "ZN2tpp       0.000000  47.370318\n",
+       "ZNabcpp      0.000000   9.474064\n",
+       "Zn2tex       0.000318   0.000335\n",
        "\n",
        "[2583 rows x 2 columns]"
       ]
      },
-     "execution_count": 6,
+     "execution_count": 9,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -479,8 +196,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "CPU times: user 68.9 ms, sys: 60.2 ms, total: 129 ms\n",
-      "Wall time: 2.03 s\n"
+      "CPU times: user 106 ms, sys: 75.7 ms, total: 182 ms\n",
+      "Wall time: 4.74 s\n"
      ]
     },
     {
@@ -510,286 +227,36 @@
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
-       "      <th>DM_4CRSOL</th>\n",
+       "      <th>DM_4crsol_c</th>\n",
        "      <td>0.000208</td>\n",
        "      <td>0.000219</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_5DRIB</th>\n",
+       "      <th>DM_5drib_c</th>\n",
        "      <td>0.000210</td>\n",
        "      <td>0.112258</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_AACALD</th>\n",
+       "      <th>DM_aacald_c</th>\n",
        "      <td>0.000000</td>\n",
        "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_AMOB</th>\n",
+       "      <th>DM_amob_c</th>\n",
        "      <td>0.000002</td>\n",
        "      <td>0.000002</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_MTHTHF</th>\n",
+       "      <th>DM_mththf_c</th>\n",
        "      <td>0.000418</td>\n",
        "      <td>0.515309</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>DM_OXAM</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>1.010167</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>Ec_biomass_iJO1366_WT_53p95M</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.049326</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>Ec_biomass_iJO1366_core_53p95M</th>\n",
-       "      <td>0.933253</td>\n",
-       "      <td>0.982372</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_12ppd__R_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.724815</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_12ppd__S_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.713997</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_14glucan_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_15dap_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.394750</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23camp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23ccmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23cgmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23cump_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_23dappa_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_26dap__M_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_2ddglcn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_34dhpac_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3amp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3cmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3gmp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hcinnm_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hpp_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.631600</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3hpppn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_3ump_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_4abut_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.667183</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_4hoxpacd_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>EX_5dglcn_e</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.563929</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
        "      <th>...</th>\n",
        "      <td>...</td>\n",
        "      <td>...</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>VALTRS</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALabcpp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>15.790000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALt2rpp</th>\n",
-       "      <td>-15.790000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VALtex</th>\n",
-       "      <td>-0.526333</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>VPAMTr</th>\n",
-       "      <td>-999.605083</td>\n",
-       "      <td>999.457448</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>WCOS</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>X5PL3E</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XAND</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>1.263200</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>47.370000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANtex</th>\n",
-       "      <td>-0.644490</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XANtpp</th>\n",
-       "      <td>-47.370000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XMPtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XPPT</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>11.842500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNH</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>11.842500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNt2rpp</th>\n",
-       "      <td>-0.302684</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XTSNtex</th>\n",
-       "      <td>-0.302684</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLI1</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLI2</th>\n",
-       "      <td>-11.842500</td>\n",
-       "      <td>19.342500</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLK</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLK2</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLUt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLUtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLabcpp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLt2pp</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>XYLtex</th>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
        "      <th>ZN2abcpp</th>\n",
        "      <td>0.000000</td>\n",
        "      <td>11.842500</td>\n",
@@ -820,68 +287,18 @@
        "</div>"
       ],
       "text/plain": [
-       "                                   minimum     maximum\n",
-       "DM_4CRSOL                         0.000208    0.000219\n",
-       "DM_5DRIB                          0.000210    0.112258\n",
-       "DM_AACALD                         0.000000    0.000000\n",
-       "DM_AMOB                           0.000002    0.000002\n",
-       "DM_MTHTHF                         0.000418    0.515309\n",
-       "DM_OXAM                           0.000000    1.010167\n",
-       "Ec_biomass_iJO1366_WT_53p95M      0.000000    0.049326\n",
-       "Ec_biomass_iJO1366_core_53p95M    0.933253    0.982372\n",
-       "EX_12ppd__R_e                     0.000000    0.724815\n",
-       "EX_12ppd__S_e                     0.000000    0.713997\n",
-       "EX_14glucan_e                     0.000000    0.000000\n",
-       "EX_15dap_e                        0.000000    0.394750\n",
-       "EX_23camp_e                       0.000000    0.000000\n",
-       "EX_23ccmp_e                       0.000000    0.000000\n",
-       "EX_23cgmp_e                       0.000000    0.000000\n",
-       "EX_23cump_e                       0.000000    0.000000\n",
-       "EX_23dappa_e                      0.000000    0.000000\n",
-       "EX_26dap__M_e                     0.000000    0.000000\n",
-       "EX_2ddglcn_e                      0.000000    0.000000\n",
-       "EX_34dhpac_e                      0.000000    0.000000\n",
-       "EX_3amp_e                         0.000000    0.000000\n",
-       "EX_3cmp_e                         0.000000    0.000000\n",
-       "EX_3gmp_e                         0.000000    0.000000\n",
-       "EX_3hcinnm_e                      0.000000    0.000000\n",
-       "EX_3hpp_e                         0.000000    0.631600\n",
-       "EX_3hpppn_e                       0.000000    0.000000\n",
-       "EX_3ump_e                         0.000000    0.000000\n",
-       "EX_4abut_e                        0.000000    0.667183\n",
-       "EX_4hoxpacd_e                     0.000000    0.000000\n",
-       "EX_5dglcn_e                       0.000000    0.563929\n",
-       "...                                    ...         ...\n",
-       "VALTRS                            0.000000    0.000000\n",
-       "VALabcpp                          0.000000   15.790000\n",
-       "VALt2rpp                        -15.790000    0.000000\n",
-       "VALtex                           -0.526333    0.000000\n",
-       "VPAMTr                         -999.605083  999.457448\n",
-       "WCOS                              0.000000    0.000000\n",
-       "X5PL3E                            0.000000    0.000000\n",
-       "XAND                              0.000000    1.263200\n",
-       "XANt2pp                           0.000000   47.370000\n",
-       "XANtex                           -0.644490    0.000000\n",
-       "XANtpp                          -47.370000    0.000000\n",
-       "XMPtex                            0.000000    0.000000\n",
-       "XPPT                              0.000000   11.842500\n",
-       "XTSNH                             0.000000   11.842500\n",
-       "XTSNt2rpp                        -0.302684    0.000000\n",
-       "XTSNtex                          -0.302684    0.000000\n",
-       "XYLI1                             0.000000    0.000000\n",
-       "XYLI2                           -11.842500   19.342500\n",
-       "XYLK                              0.000000    0.000000\n",
-       "XYLK2                             0.000000    0.000000\n",
-       "XYLUt2pp                          0.000000    0.000000\n",
-       "XYLUtex                           0.000000    0.000000\n",
-       "XYLabcpp                          0.000000    0.000000\n",
-       "XYLt2pp                           0.000000    0.000000\n",
-       "XYLtex                            0.000000    0.000000\n",
-       "ZN2abcpp                          0.000000   11.842500\n",
-       "ZN2t3pp                           0.000000   47.370000\n",
-       "ZN2tpp                            0.000000   47.370318\n",
-       "ZNabcpp                           0.000000    9.474064\n",
-       "Zn2tex                            0.000318    0.000335\n",
+       "              minimum    maximum\n",
+       "DM_4crsol_c  0.000208   0.000219\n",
+       "DM_5drib_c   0.000210   0.112258\n",
+       "DM_aacald_c  0.000000   0.000000\n",
+       "DM_amob_c    0.000002   0.000002\n",
+       "DM_mththf_c  0.000418   0.515309\n",
+       "...               ...        ...\n",
+       "ZN2abcpp     0.000000  11.842500\n",
+       "ZN2t3pp      0.000000  47.370000\n",
+       "ZN2tpp       0.000000  47.370318\n",
+       "ZNabcpp      0.000000   9.474064\n",
+       "Zn2tex       0.000318   0.000335\n",
        "\n",
        "[2583 rows x 2 columns]"
       ]
@@ -894,11 +311,18 @@
    "source": [
     "%time flux_variability_analysis(model, fraction_of_optimum=0.95, processes=4)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -912,7 +336,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.6"
+   "version": "3.7.1"
   },
   "toc": {
    "base_numbering": 1,
diff --git a/benchmarks/single_gene_deletion_linear_room.ipynb b/benchmarks/single_gene_deletion_linear_room.ipynb
index 39dd87791..47e644be2 100644
--- a/benchmarks/single_gene_deletion_linear_room.ipynb
+++ b/benchmarks/single_gene_deletion_linear_room.ipynb
@@ -27,21 +27,18 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "DEBUG:optlang.util:Gurobi python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/gurobipy\n",
-      "DEBUG:optlang.util:GLPK python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/swiglpk\n",
+      "DEBUG:optlang.util:Gurobi python bindings not available.\n",
+      "DEBUG:optlang.util:GLPK python bindings found at /Users/uridavidakavia/PycharmProjects/venv_cobrapy3_7/lib/python3.7/site-packages/swiglpk\n",
       "DEBUG:optlang.util:Mosek python bindings not available.\n",
-      "DEBUG:optlang.util:CPLEX python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/cplex\n",
-      "DEBUG:optlang.util:Scipy solver not available\n",
-      "DEBUG:pip._internal.utils.misc:lzma module is not available\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: git\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: hg\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: svn\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: bzr\n"
+      "DEBUG:optlang.util:CPLEX python bindings not available.\n",
+      "DEBUG:optlang.util:OSQP python bindings not available.\n",
+      "DEBUG:optlang.util:COINOR_CBC python bindings not available.\n",
+      "DEBUG:optlang.util:Scipy linprog function found at /Users/uridavidakavia/PycharmProjects/venv_cobrapy3_7/lib/python3.7/site-packages/scipy/optimize/__init__.py\n"
      ]
     }
    ],
    "source": [
-    "from cobra.test import create_test_model"
+    "from cobra.io import load_model"
    ]
   },
   {
@@ -57,9 +54,26 @@
    "cell_type": "code",
    "execution_count": 5,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "INFO:cobra.core.model:The current solver interface glpk doesn't support setting the optimality tolerance.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "model = create_test_model(\"textbook\")"
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -391,7 +405,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -405,7 +419,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/benchmarks/single_gene_deletion_room.ipynb b/benchmarks/single_gene_deletion_room.ipynb
index b3576576c..0b8d52eac 100644
--- a/benchmarks/single_gene_deletion_room.ipynb
+++ b/benchmarks/single_gene_deletion_room.ipynb
@@ -27,21 +27,18 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "DEBUG:optlang.util:Gurobi python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/gurobipy\n",
-      "DEBUG:optlang.util:GLPK python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/swiglpk\n",
+      "DEBUG:optlang.util:Gurobi python bindings not available.\n",
+      "DEBUG:optlang.util:GLPK python bindings found at /Users/uridavidakavia/PycharmProjects/venv_cobrapy3_7/lib/python3.7/site-packages/swiglpk\n",
       "DEBUG:optlang.util:Mosek python bindings not available.\n",
-      "DEBUG:optlang.util:CPLEX python bindings found at /home/moritz/.virtualenvs/cobra/lib/python3.5/site-packages/cplex\n",
-      "DEBUG:optlang.util:Scipy solver not available\n",
-      "DEBUG:pip._internal.utils.misc:lzma module is not available\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: git\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: hg\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: svn\n",
-      "DEBUG:pip._internal.vcs:Registered VCS backend: bzr\n"
+      "DEBUG:optlang.util:CPLEX python bindings not available.\n",
+      "DEBUG:optlang.util:OSQP python bindings not available.\n",
+      "DEBUG:optlang.util:COINOR_CBC python bindings not available.\n",
+      "DEBUG:optlang.util:Scipy linprog function found at /Users/uridavidakavia/PycharmProjects/venv_cobrapy3_7/lib/python3.7/site-packages/scipy/optimize/__init__.py\n"
      ]
     }
    ],
    "source": [
-    "from cobra.test import create_test_model"
+    "from cobra.io import load_model"
    ]
   },
   {
@@ -57,9 +54,26 @@
    "cell_type": "code",
    "execution_count": 5,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "INFO:cobra.core.model:The current solver interface glpk doesn't support setting the optimality tolerance.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "model = create_test_model(\"textbook\")"
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -312,7 +326,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "CPU times: user 1min 21s, sys: 53.1 ms, total: 1min 21s\n",
+      "CPU times: user 1min 15s, sys: 1.6 s, total: 1min 17s\n",
       "Wall time: 1min 21s\n"
      ]
     },
@@ -337,33 +351,33 @@
        "  <thead>\n",
        "    <tr style=\"text-align: right;\">\n",
        "      <th></th>\n",
+       "      <th>ids</th>\n",
        "      <th>growth</th>\n",
        "      <th>status</th>\n",
        "    </tr>\n",
-       "    <tr>\n",
-       "      <th>ids</th>\n",
-       "      <th></th>\n",
-       "      <th></th>\n",
-       "    </tr>\n",
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
-       "      <th>(b1779)</th>\n",
+       "      <th>0</th>\n",
+       "      <td>{b1779}</td>\n",
        "      <td>45.0</td>\n",
        "      <td>optimal</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>(b0008)</th>\n",
-       "      <td>0.0</td>\n",
-       "      <td>optimal</td>\n",
-       "    </tr>\n",
-       "    <tr>\n",
-       "      <th>(b0114)</th>\n",
+       "      <th>1</th>\n",
+       "      <td>{b2276}</td>\n",
        "      <td>NaN</td>\n",
        "      <td>time_limit</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <th>(b2276)</th>\n",
+       "      <th>2</th>\n",
+       "      <td>{b0008}</td>\n",
+       "      <td>0.0</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>{b0114}</td>\n",
        "      <td>NaN</td>\n",
        "      <td>time_limit</td>\n",
        "    </tr>\n",
@@ -372,15 +386,14 @@
        "</div>"
       ],
       "text/plain": [
-       "         growth      status\n",
-       "ids                        \n",
-       "(b1779)    45.0     optimal\n",
-       "(b0008)     0.0     optimal\n",
-       "(b0114)     NaN  time_limit\n",
-       "(b2276)     NaN  time_limit"
+       "       ids  growth      status\n",
+       "0  {b1779}    45.0     optimal\n",
+       "1  {b2276}     NaN  time_limit\n",
+       "2  {b0008}     0.0     optimal\n",
+       "3  {b0114}     NaN  time_limit"
       ]
      },
-     "execution_count": 15,
+     "execution_count": 9,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -388,11 +401,18 @@
    "source": [
     "%time single_gene_deletion(model, method=\"room\", gene_list=genes, processes=1)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -406,7 +426,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/configuration.ipynb b/documentation_builder/configuration.ipynb
index 25f7ef317..4725a3f94 100644
--- a/documentation_builder/configuration.ipynb
+++ b/documentation_builder/configuration.ipynb
@@ -166,12 +166,12 @@
        "                <td><strong>Name</strong></td><td></td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x07f0426135fd0</td>\n",
+       "                <td>0x7f8642e5bba8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Stoichiometry</strong></td>\n",
        "                <td>\n",
-       "                    <p style='text-align:right'> --> </p>\n",
-       "                    <p style='text-align:right'> --> </p>\n",
+       "                    <p style='text-align:right'>--></p>\n",
+       "                    <p style='text-align:right'>--></p>\n",
        "                </td>\n",
        "            </tr><tr>\n",
        "                <td><strong>GPR</strong></td><td></td>\n",
@@ -184,7 +184,7 @@
        "        "
       ],
       "text/plain": [
-       "<Reaction R1 at 0x7f0426135fd0>"
+       "<Reaction R1 at 0x7f8642e5bba8>"
       ]
      },
      "execution_count": 7,
@@ -219,12 +219,12 @@
        "                <td><strong>Name</strong></td><td></td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x07f04260d4438</td>\n",
+       "                <td>0x7f8642e5bda0</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Stoichiometry</strong></td>\n",
        "                <td>\n",
-       "                    <p style='text-align:right'> <=> </p>\n",
-       "                    <p style='text-align:right'> <=> </p>\n",
+       "                    <p style='text-align:right'><=></p>\n",
+       "                    <p style='text-align:right'><=></p>\n",
        "                </td>\n",
        "            </tr><tr>\n",
        "                <td><strong>GPR</strong></td><td></td>\n",
@@ -237,7 +237,7 @@
        "        "
       ],
       "text/plain": [
-       "<Reaction R2 at 0x7f04260d4438>"
+       "<Reaction R2 at 0x7f8642e5bda0>"
       ]
      },
      "execution_count": 8,
@@ -262,16 +262,26 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from cobra.test import create_test_model"
+    "from cobra.io import load_model"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 10,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "model = create_test_model(\"textbook\")"
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -290,7 +300,7 @@
        "                <td><strong>Name</strong></td><td>R acetate reversible transport via proton - symport</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x07f042607c780</td>\n",
+       "                <td>0x7f8642f174e0</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Stoichiometry</strong></td>\n",
        "                <td>\n",
@@ -308,7 +318,7 @@
        "        "
       ],
       "text/plain": [
-       "<Reaction ACt2r at 0x7f042607c780>"
+       "<Reaction ACt2r at 0x7f8642f174e0>"
       ]
      },
      "execution_count": 11,
@@ -342,7 +352,7 @@
     {
      "data": {
       "text/plain": [
-       "<optlang.cplex_interface.Model at 0x7f04260d4b00>"
+       "<optlang.glpk_interface.Model at 0x7f8642e740f0>"
       ]
      },
      "execution_count": 12,
@@ -376,7 +386,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "new_model = create_test_model(\"textbook\")"
+    "new_model = load_model(\"textbook\")"
    ]
   },
   {
@@ -387,7 +397,7 @@
     {
      "data": {
       "text/plain": [
-       "<optlang.glpk_exact_interface.Model at 0x7f04260d47b8>"
+       "<optlang.glpk_exact_interface.Model at 0x7f8643112a90>"
       ]
      },
      "execution_count": 15,
@@ -409,7 +419,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -423,7 +433,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.6"
+   "version": "3.7.1"
   },
   "toc": {
    "base_numbering": 1,
diff --git a/documentation_builder/constraints_objectives.ipynb b/documentation_builder/constraints_objectives.ipynb
index 226ba4307..8527f58e2 100644
--- a/documentation_builder/constraints_objectives.ipynb
+++ b/documentation_builder/constraints_objectives.ipynb
@@ -34,8 +34,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import cobra.test\n",
-    "model = cobra.test.create_test_model('textbook')"
+    "from cobra.io import load_model\n",
+    "model = load_model('textbook')"
    ]
   },
   {
@@ -94,7 +94,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "4.66274904774 4.66274904774 0.855110960926157\n"
+      "4.662749047738151 4.662749047738149 0.855110960926157\n"
      ]
     }
    ],
@@ -158,7 +158,7 @@
     }
    ],
    "source": [
-    "model = cobra.test.create_test_model('textbook')\n",
+    "model = load_model('textbook')\n",
     "with model:\n",
     "    model.objective = {model.reactions.Biomass_Ecoli_core: 1}\n",
     "    model.optimize()\n",
@@ -180,7 +180,7 @@
     {
      "data": {
       "text/plain": [
-       "-1.0*Biomass_Ecoli_core_reverse_2cdba + 1.0*Biomass_Ecoli_core"
+       "1.0*Biomass_Ecoli_core - 1.0*Biomass_Ecoli_core_reverse_2cdba"
       ]
      },
      "execution_count": 6,
@@ -225,13 +225,15 @@
    "outputs": [
     {
      "data": {
-      "application/pdf": 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l1zmXH/8DLzW+7r7/4Gb+iT9Q/C3lCfPdD+7mn/iD7/0u/P3n4j/xB+n6xl+J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\nMDAwMDAwNzY4NSAwMDAwMCB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rO3SxiZaWFlJTU0lJSeEPf/gDGo3GHJfsioc8iqLg5eVFXFwc0dHRNDQ0cOTI\nEdLT04mIiLB6CldMTAw6nQ6dLo3w8PMsXx5JaanxJlZTA8nJRsMcF9e++TQaDdHR0Wg0GuLj47Fv\nb0fWm6DValFVlV27dlFcXCwccnBzc8PNzY3U1FTs7e1l6ELyc+J/2nORTQxyfX09hw8fJiUlhVmz\nZuHv78+FCxdYunQp3t7e+Pv7c/nyZTZt2sSFCxcoLS2ltraW1tZWtFot9vb2t81wu7m5ERMTQ9++\nfdHpdCQkJKDRaCgvL8fJyckq+9JoNPTu3RtfX1/Onj1CfPxxiop6UFtrVLvX6eDIEXj11fbPqSgK\nYWFh2Nvb09bWxpkzZ/CzMPE5IyOD1NRUgoKChNPrAgICKCsrIz09naioKJmfLPm50C6DbJO0t/z8\nfD777DOuNf4BAQEcO3YMf39/CgsL2bx5M7W1tdeFBlxcXPDz88PPz4/BgwdbRVzHElpbW1m6dClB\nQUHMtTRn7Rr8/UuZM+dLunWrZvPmBzl6dCAAigKiT/mpqakkJyfzxBNP0KtXL+G96XQ6li9fTmVl\nJQsWLBD+OTQ2NvLBBx/g7OzMwoUL74gGBhKJhdy5ecgtLS3U1NRQXV1NZWUlpaWl5j9PPvkkwcHB\nZGVlkZaWxuTJky0uhugoqqqSnZ2NnZ0dvXv3RqfT0dDQQDfRFIkrCAuDy5ebmTEjicjIs+zdO4Kd\nO+/Hz0/h0iWxOQ0GA5mZmcTExFjs0dfU1LBs2TKcnJxYsGCBcObF2bNnWbVqFTNmzKB///4W7Uki\nuQPoOvKbOp2uQ9c7OjqaPeIrudKYGwwGmpqazAYhLS2NnJwccypbZ3rRiqIQHR1tfn3o0CH27dvH\n/fffz+DBgy0yev/7v7BwoRNr1szlwQe/Z8SIA5w5049LlwJ5/3144QWjt9wRNBqNWUe5rKyMioqK\nq/bfETw9PZk9ezYrVqzgu+++Y8aMGUKft3fv3jz//PMWHxZKJHcTNokhV1dXc+LECVJSUq4LW3SE\nKzMTfH19GTRokLno5OLFi5w7d46TJ09y+PBhTp8+TWNjIy4uLp3ercTT05PLly+TlpZGXl4eISEh\nwroScXFGLzk9XSE9PZKammh++9tA9HpYskSlpERh4kQQrUTetGkT+/bto2fPnsIevaenJ1qtltTU\nVNzc3ISFiNzc3ABjibWjo2OXzVeXSKxA14khZ2Vl8eWXX9pMXCgnJ4fMzEzy8/MBo/GOj48nPj7e\nbASsjaoyWJfTAAAgAElEQVSqnDhxguTkZHQ6HePHjycxMdFqh5GnT2fy1VcHePPNedxzjzNJSSDi\nXDY1NfHJJ5/Q0NDAL37xC+EnCVVVWbVqFRcuXGDBggXCnm5VVRXvvvsuI0eOlKL2kruZrlM6bcsM\niW7dupGYmMiTTz7J66+/zqRJk3BycmL79u1899135uusfWNQFIX4+HhefPFFIiIiSE5OZs2aNVYr\ngrC31+Lv38KyZW1kZMCgQcYefh3F2dmZxx57DK1Wy6pVq4T3pygK06dPx8nJieTkZKE5ALy8vLj/\n/vuJj48XnkMiuVuwiYecmZnJV199dVvFhcrLyzEYDPj5+VFVVcXq1auZNGkS4eHhVl9LVVUOHz7M\n1q1bcXZ2Zvr06VZZx9SZJCPDwJw5LRQWOrNsGcyf3/G5iouLWb58OaGhocyfP184XFBSUoKnp6fV\nwkK2UOCTSG4DXcdD7griQt27dzcfEjY1NeHg4GBugXSjVDtLUBSFxMREcxbCoUOHrHIjMhnNoqLN\nvPzyCkaMaOLxx+E//7Pj4kTBwcE89NBD5OXlsX37duE9BQUF4erqisFgsKgzdnNzM2vXruXEiRPC\nc0gkdzo2Mchd7bAmKCiIZ5991iy5uXPnTpYsWcLu3buvashqKQEBATz77LM88sgjP3akbuhwxsmN\n6NevHzU1FcyevZKXXmrhn/+EyZOhqqpj8yQkJDB48GAOHjxosULchg0b+Oyzz2htbRUa7+joSF1d\nHdu3bxeeQyK50/lZGuRrGTZsGL169SIlJYUlS5Zw4MABqwkiOTg44OTkhKqqfPnll6xYsQK9JVqb\nQHh4OLNmzeLSpYsMHLiGDz/UsXMnJCbCmTMdm2vixImEhoby7bffUltbK7ynQYMGMWjQIOEiD0VR\neOCBB6ivr2ffvn3C+5BI7mSk2hvg7+/PnDlzWLBgAUFBQWzbto3333+fnJwcq62hKAqjRo0iISHB\nKt0z+vTpw/Tp07lw4QLdun3Dzp0qdXUwdChs2tT+ebRaLTNnzmTy5MkWlTGHhoYyYsQIi26+ISEh\nxMbGcuDAAYvCHxLJnYpNDPK1Bui7775j165d5tcnTpzg5MmTFBYWUl9ff9sO/oKDg5k/fz7z589H\nq9WyZs0aVq9eTUVFhVXmj4yMZPDgwQCcO3fOnJYnSmxsLBMmTCAzM5Pm5h2kp0OfPjBtGvz1r9De\nr9Hd3Z34+HgURaGxsdGiPWVnZ7N69WphNbf7778fRVFISUmxaB8SyZ2ITSr1ro0JVldXX3WSvm3b\nNurr682vHRwc8PLyws/Pj4CAAAIDAwkICDAfwnU2ERERPP/886SmprJ7924++ugjXn31Vautb1JO\nu3TpEjNmzKBv377Ccw0dOpSKigr279+Pt7c3e/bcw8KF8N//DcePw/Ll0N7U68LCQr744gtmz559\nlXB/R2hrayM3N5fDhw8zZMiQDo/39PRk8ODBHDp0iBEjRljU008iudOwSaVeTU3NVZV6cXFxREVF\nmd9PSEggISGByMhIgoOD6datGwaDgeLiYjIzMzl+/DhVVVXm8t+cnBycnZ0tlpX8KTQaDSEhISQk\nJBAQEGCuRquvr7c4a0RRFPr27Ut+fj6pqan4+voKGx5FUejduzfFxcWkpaUREdGTp5/uhrs7vPMO\nfPcdPPAA/Nil6idxdXWlvLzcIolRX19fioqKOHHiBPHx8UJa2AEBAaSnp1NXV0dMTIzQPiSSLkbX\nqdSzJA+5oaGBS5cu4ezsTFBQEDU1Nbz99tsMHz6c8ePHYzAYqKqqsonAUG5uLl999RWzZ88mMjLS\n4vlaWlpYtWoVRUVFzJgxw3zDEaG5uZnk5GTuu+8+PDw8ANiyBR591FhmvW4d2KoQrqKigvfff5/4\n+HimTp0qNMfOnTvZu3cvzz33HAEBAVbeoURic7pOHrIlh1iurq5ERESYPVQ3NzeeeeYZBg40ylIW\nFBTw7rvv8v7777Nv3z7q6uqssucbERgYSP/+/enRo4dV5nN0dOSxxx4jJCSEpKQkMjMzhedycnLi\n4YcfxsPDA1VVMRgMTJwIhw+Dnx+MHw9Ll7YvrtzS0sLGjRs5f/680F58fHwYPHgwx44do7S0VGiO\n4cOH4+7uzuXLl4XGSyR3IjYxyNbMK9VqtYSEhODt7Q0YH5EfeOABnJyc2LFjB2+99RarVq0iMzPT\n6m2C3NzcmDZtGs7Ozuj1epKSkiw2GCajHBwcTFJSksUHfXq9ntWrV5uLPXr3hkOHjHnKr7wCCxbA\nrVKtNRoNBQUFbNq0SfhnN3r0aBwcHNixY4fQeCcnJ1555RVZUi35WdHlPeRb4erqypAhQ3jmmWd4\n6aWXGDlyJKWlpXz11VcsXbqUQ4cOWbXYw0R1dTUXLlzgk08+ITs726K5HBwcmDdvHt7e3qxdu5ZL\nosLHGL9rLy+vq9pkeXjAN98YD/o+/dQYurh48eZz2NvbM3XqVKqrq9m/f7/QPlxcXBg5ciQ5OTnC\nNxk7OztUVaW8vFxovERyp2ETg2yN6rT24OPjw3333cevfvUrZs2ahbu7O1u2bOGTTz6xeiqdj48P\nzz77LL6+vqxdu5b9+/dbtIazszPz58/H2dlZ+DHfxKRJkxg3btxVmSwaDfz5z8ZY8vHjRnGitLSb\nz9GzZ09iY2PZv38/VR0tAfyRIUOG4OHhwa5du4S/m/379/PBBx9YVLQikdwp3HVqb2B85I6JieGZ\nZ55hwYIFTJw4EUVR0Ov1pKamWi2E4u7uzlNPPUW/fv3Yvn0733//vUVG2cPDg1/+8pfEtbeb6U0w\nfd/5+fls27btqvdmzoSDB8HBAUaPhs8/v/k848aNQ6PRsHXrVqF92NvbM2LECJqbm4W1Qvr168fI\nkSM7NaNGIukq3PWVesHBwURERADGtkHJyckW6zZcib29PTNmzGD48OGkp6fzzTffWFQabTI8mZmZ\nfPvttxYZ+Pz8fA4cOMCZa+qp4+KMh33Dh8OTT8Jrr8GNfkQeHh6MGjWKrKws4QO+QYMG8fzzzwsL\n9nt5eTF27Fib5aBLJLeTn43aGxjLjX/xi1+QkJAAGNPYysrKLJ5XURTGjx/Pfffdx8mTJ1m3bp3F\nN6GKigry8vIs0lMeNWoUgYGB/PDDD9fF0bt3N6bFvfIKvPUWTJoElZXXzzFs2DA8PT3ZsWOH0M1B\no9GgKAotLS3C5dCqqpKZmcnZs2eFxkskdwo/O3GhHj16mA+8tmzZwocffsi+ffuskpExatQoJk2a\nRHZ2Nnv27LForhEjRvDcc89Z1OFEq9UyefJk6uvr2blz53Xv29vDkiXwySewZw8MHgynT199jZ2d\nHWPGjKGkpET48FJVVT766CO+//57ofEAKSkpN/wMEsndhE0s5ZUKYCdOnDDHcJuammhoaLgt2hWK\novD0008TFRXFjh07WL58uVU0KxITE3n00UcZOXKkxftzcnKira2NXbt2Ccdgg4ODGTx4MIcPH6ak\npOSG1zzzDKSkQGOjUZxow4ar34+Pj8fX11f4sFFRFMaMGcM999wjPH7gwIFcvHjxpp9BIrkbsEnp\ndElJCZmZmaSkpBAQEEBiYiKOjo7s37+fNWvWsHfvXk6ePEleXh6XL1+moaEBR0dHHB0dO/VA0MHB\ngZiYGHx8fDh+/DiHDx82a2hYQvfu3dFqtbS0tJCenk5wcLDw57h8+TIbNmygoqKCmJgYoXlCQkI4\nduwYxcXFJCQk3HCOkBCYOxd27oT/+z9jVsaoUcYO14qiMGDAAHr16iX0GcCoqGdJJ3AfHx/S0tJo\na2ujT58+wvNIJLeJdpVO26zr9KlTp0hJSWH9+vV4eHigKAoODg74+fnh5+eHoiiUl5eTk5PDmTNn\nSE1N5ejRoxQVFREZGdlpucyKouDv709cXBwFBQUcOnSIxsZGwsPDLQ61ZGRkkJycTFhYmHCHZ3d3\nd+zs7EhLS8PHx0eomaidnR1OTk4cPnwYf3//m+pmeHjA449DYaExlHHqlLGgxMHh32Gn0tJSXFxc\nhG4MDQ0NHDx4kMDAwA7rJtvZ2VFZWcmZM2cYOnRop+a2SySdQLsMsk3U3pqbm81/v1JzIigo6LoW\n8nq9ntLSUgoLCykqKqK2ttacebB7927s7OwYPny41T1nDw8PnnzySbZv386hQ4e4fPkyjz76qEWn\n+4MGDcLX15ewsDCL9jZs2DAyMzNJTk4mIiJCKGMhISGBQ4cOsX37dqKiom5q0JycYMUKGDAAXn8d\nhg2DjRshPNwo6rRmzRoef/xxoR6BlZWVpKSk4OLiYpYh7QixsbEcO3aM3NxcKTokuSvpcpV6Wq2W\nwMBAEhMTeeSRR3jqqafMxre4uJjz589flWdrafeNa9eeOHEijzzyCJcvX7Y4pqwoitkYFxUVCZdZ\nazQapk6dSnNzM1u2bBGeY9y4cbS1td2y0ENR4NVXjVkYxcXGw74dO4ydSoYPHy4s5NSjRw8CAwM5\ncuSI0PiwsDDc3Nw4efKk0HiJpKtjEw/ZWpV68+bNM6eT1dXV8fnnn+Pu7k5iYiIDBw7EycnJKuvE\nxsYSGRlpnq+5udmiuQ0GA19//TUajYaFCxcKpQH6+fkxcuRI9uzZQ1xcnDm3uiNERkby8ssvtztc\nMG6cMV952jSYOBEWL7bjlVfGI/pwoigKCQkJ/PDDD1y6dKnDKm4ajYb+/ftz+PBhmpqaZG6y5K6j\ny3nIt8JkTNzc3Hj00Ufx9vZm+/btvP322+zdu9dqVXgmA3z8+HGWLl1qUTmzycOtrKxk8+bNwlkl\no0aNwsvLiy1btgil6SmKgp2dHW1tbe3Ov46IMFb2TZli9Jqffhqys/M4evRoh9cH6N+/PxqNRri7\ndGxsLHq9nqysLKHxEklXxiYGuTPEfRRFISoqiieffJKFCxfSs2dPdu7cydKlSzl69KjVUulCQkII\nCQmxqN8cGB+3x4wZw4kTJ4SNkZ2dHePHj6esrEzYIAKsX7+e1atXtzvc4+4OSUmwaBF89hn885/H\nSU7eInTzc3FxISoqipMnTwrdVAIDA4mOjrba05BE0pW4KwpDAgMDmTt3Lk8//TReXl5s2rSJ5cuX\nWyzSA+Dt7W0+3NPr9RbpLY8aNYrQ0FCSk5OF54mOjqZnz54WKcINGTKEMWPGdOhgVKOBP/0Jvv4a\ndu8eiE7XysaNYrHcuLg46uvrhcqxFUVhzpw5FrW9kki6KneVlkVoaChPP/0006ZNo7y8nIMHD1p1\n/q+//prPPvtMuBGoKXTR1tYmHLpQFIXHHnuMhx56SGgPAL169SIhIUHoRjl9Oqxf34OqKj+2bz/K\n8uUdXz8yMhIHBweLBPlbWlqu6sMokdwN3HVqb6aDo5deeonx48cDxnQra8g3JiYmUl1dzZdffimc\n3eHj48PYsWPJzs6+TvSnvZjSACsqKoTDQa2trRw8eFAo8yMuTmHKlASCgkr4z/+s4NVXbyxOdDPs\n7OyIjIwkOztbKGxhMBh4++232b17d4fHSiRdGZsYZGumprUXFxcXc77uxo0bWbZsmcXZHj179mTa\ntGkUFBRcJ2vZEYYOHUpAQABbt24V3lN1dTXvvfceaT8lavwTGAwGdu3axaFDh4TGDx5s7P+3YMEp\nliwxZmF0JEuwf//+RERECN1QNBoNY8aMsUpfQ4mkK/GzUHubOnUqDz74oFU0dWNjY0lMTCQ1NVXY\nw9VoNEycOBGdTicc5+7WrRvjx4+/qnt3R3BycqJ///6cPn1a6HDOw8OD0NBQQkNPs2IF7N9vzFdu\nb4pwdHQ006dPF05dGzp0qPBnl0i6KrclhtzQ0MD777/PqlWr+O6770hPT6ekpKTTYs0+Pj7mQ6BT\np05ZrMQ2YcIEgoOD2bhxIzU1NUJzhIWF8eqrrxIcHCy8j2HDhgmVUpuIj49Hp9MJp5D169ePsrIy\nJk0qZfduaG42VvYlJbVvvKqqFklylpWVyfZOkruK25KHrNfr6d69O42NjZw+fZrNmzezbNky/v73\nv7Nq1SpSU1OFDd2tyMvLY9euXRa1FdJqtcycORNVVdm0aZPwPA4ODhgMBi7+VIO7W3D58mV27twp\ntIfQ0FA8PT2F0/BM5ctZWVkMGQLp6dC/v7EryZ/+BLcKD6elpbFkyRLhw7kVK1awb98+obESSVfE\nJpV61xoLDw8PZs+ebX6vurqaixcvcuHCBc6dO0dycjLJycnMnTvX6o+lkydPxmAwsGfPHnMsUoRu\n3boxbtw4fvjhB44dO8aAAQOE5tmxYwdpaWn86le/EtI+LiwsZO/evURFRdGjR48OjVUUhbi4OPbt\n20d9fX2H13dzcyM+Pt48LijIKOP5y18a+/cdPw5ffGHMY74R4eHhjB49ukNrXrn3nj17WtylWyLp\nStjEIDs6Ot70PUVR8PLywsvLy+xxVVZWcurUKXr27AnAyZMnqampYciQIRbHgU2pZ6qqkpKSgqen\np7mDSEcZPHgwZ86cITc3V9gg33PPPbi7u//kd/RTxMbGsmXLFo4fP95hgwzGw7W9e/eSlZXFoEGD\nOjz+4Ycfvuq1k5NR8H7AAPiP/zDqK2/cCL17Xz/W19eXsWPHdnhNE6GhoWRmZlJbW4uHh4fwPBJJ\nV8EmIYuOtiHy9vZm9OjRZiOVn59Penq61QpMFEVhypQphIeHs2nTJvLy8oTnmTt3LrNmzRLei4+P\nD0OHDhW+0Tg6OhIdHc3p06eFsll8fX3x8vIiJydHaH0wnhFc+TNWFHj5Zdi6FS5dMh723axPaktL\nCwUFBULrmuLvUrRecrdg844hIkyZMoXnnnsOrVaLTqdjzZo1FlWqgTEOPHv2bHx8fEhKShKOY5pE\n9Gtra4UPqAwGA0eOHBFukRQXF0dTUxO5ubkdHmsqQc/LyxPKtlBVlSVLlrBr167r3rvvPqM4UUiI\nsWff//0fXBvqTk9PZ/ny5ULFNgEBASiKYlEMXiLpStjEIFtD8MeUHlVdXU1JSQnLli1j3759FmlW\nODo6MnPmTFpaWkhKShLuq9fW1saHH354Q6PUHhRFITU1VbjQISIiAmdnZ+HKt5iYGKKiooSMoqIo\nDB069KbdRMLD4cABY4Xf668bu1xf2Y3K5OUWFxd3eG17e3t8fX2lQZbcNdxxam++vr688MILREdH\ns2PHDtatW2eRwffz8+PBBx+kuLhYWK/Yzs6OcePGMXDgQKHxiqIwaNAgLl68KGRcNBoNkZGR5Obm\nCt1UQkNDmTVrlnBXkxEjRtCvX7+bvu/mBl99ZTzo++ILGD0aioqM7wUFBaEoCkWmf+gggYGBMmQh\nuWuwiUG2lh6yCRcXF2bOnMmECRPIyspixYoVHY5TX0lCQgIvv/wygYGBwnMMGDCA0NBQ4fH9+/dH\nURROX9v2uZ1ERUXR1NQkbNig47F+E6qqUlVV9ZOCSRoN/Pd/GxuoZmXBoEFGz9nBwQFfX1/hEJS/\nvz8NDQ3C+iISSVfijvOQTSiKwrBhw5g7dy5lZWV8/vnnwgZFURTc3d1RVVXo0dlEVVUVycnJQuXA\nLi4uhIeHc/r0aaEwTEREBBqNRvhw7uDBgyxevPiqdlvtpaWlhXfeeaddkqDTpsGhQ0av+d57jRkZ\nvr6+7dZnvhZT41RZICK5G7hjYsg3IzIykrlz51JZWcnKlSstWuvIkSN8/PHHwo/ADQ0NpKamCnu5\nMTExVFdXC3mLTk5OV+UEd5SePXsydOhQoUwNJycnfHx82h3y6dcP0tKMBnnBAkhL86WqqkroSSok\nJIQFCxZY9HQjkXQV7go95PDwcGbPns3ly5dJTU0Vnic2NpaxY8fi7e0tND44OBhfX18yMjKExpuK\nYM6dOyc0furUqQwdOlRobFBQEBMmTMDV1VVofEe9XG9v+P5740Hf5s3GLti5uR33cp2cnAgODraK\nTolEcruxuZZFamoq+/fvJzc3V+jx+GZERkbyxBNPMGLECOE5HB0dGT16tHA3ClPlm6lbdkdxc3PD\nz89POC8ajCl0ok8JbW1tVFZWCo319fWloqKiQx62nR3885/w+utGg/zSS2UcP97xtTMzM4WFniSS\nroRNDPKV3svZs2fZvn07q1ev5h//+AcrVqzg6NGjVjn4CwsLQ6PR0NDQcMvOyj9FZmamsLh9dHQ0\ngLBgT69evSgoKBASWmppaeGNN94gPT1daO2kpCTWrFkjNNbX1xdVVYU6dT/5pPGJxM2tkuHDYd26\njo1PS0sTlhGVSLoSNjHIV3rCjz32GL/5zW948sknGTFiBA0NDWzatIm33nqLgwcPWqydrKoqK1as\nsEj0Jzc3l127dgl5mt27d8fHx0f4cC0yMpLw8HChA0pHR0fi4uLw8fERWtvb25uqqiqh1DlLDte0\nWi2PPfYYixcnkJAAs2fDH/5wa3EiEw899BAzZ87s8LoSSVfDJloW1x40OTs7ExYWRlhYGPfddx8F\nBQXs3buXrVu3kpGRwaxZs/D19RVaS1EU7r33XpycnIQ7lcTFxZGRkUFubu5P5tfejF69enHixAkM\nBkOH4+cRERFERER0eE0TlrR28vb2Rq/XU1tb2+GcZNP1oip9vX8Uu9i5E158Ef73f+HECVi5Em4l\nUyF6A5JIuhq3vaeeSbVr/vz5zJ07F71eb/EhYL9+/SwyaqGhobi6ugrHJUNDQ2ltbRUuNAHxLiuq\nqtLQ0CD0dGA6zBSJIzs5OWFnZyfcvLWkpIQzZ87g6AjLlsG77xoP/YYOhVs9bJSXl7Nv3z6rnklI\nJLeDLtUxJCoqihdffNHs8YhqQwA0Njaybds2oRQyU+VbXl6esM4wGKUxRdiwYQOffvqp0NgjR47w\nz3/+U8gwmr53EYOsKAoeHh7CvQszMjL47rvvfpzL6CVv3w5lZZCYCMnJNx9bVlbGjh07LPr/RSLp\nCtjEIHekisrkHR88eJD3339f2MvUaDSkpaVx5MgRofE9e/akqalJqGDBw8ODnj17CqdiBQUFmaVH\nO4opdCBinEyhJVEvd8KECQwZMkRo7JAhQ5g3b95V/3bvvUZxorAwmDwZ3nzzenEi+Le8q2jDV4mk\nq2CTGLKI2lv//v2pq6sT1rl1cnKid+/e5OTk8OCDD3Y4nmwyiAUFBfj5+XVorKIoPPXUUx0acyWJ\niYnCY03fl4hR1Wg0uLq6Civf9enTR2gc/PtQ8FrCwoz9+p5+Gn7zGzh2DD7+GK5sxWe68Vm7RF8i\nsTU28ZCbrpT3aifu7u5MmDBBuAkmGDMWamtrhU7+u3Xrhr29vXBJr6WoqiqU7WDyckWNqrOzs7Cn\nWVFRIdzBo6qqiuPHj98ws8XVFb78Ev72N1izBkaOhCujQdIgS+4WbmmQFUXJURTFoCjKDU9MDAYD\n8fHx2Nvb4+zszKpVq667xpIqqry8PDZv3iw01tRBQ0RBTVEUfHx8hPJqAQ4fPszixYuFjGphYSF/\n/etfuXDhQofHWvr4bm9vL2zYDh06xLqOJhH/SEFBARs2bLjpjURR4He/g2+/hdxcoziRqZ2eNMiS\nu4X2eMjvAPNv9uZf/vIXSkpKaGlpYenSpTz33HPXXWOJvsSlS5dIT08Xiol2794dOzs7YSWxkJAQ\nYQ/dzc2NwMBAISOh1WqFK+60Wi0ajUbYOA0fPpx77rlHaOyAAQOYMmWK0Nj2GtWHHoLUVPD0NArg\nf/SRNMiSu4dbBndVVX1XUZSRN3t/7dq1PProo2g0GhYsWMAvf/lLjh07dlWfOtF8YMCcvlZQUNDh\n3FiNRoOnp6dwbuyDDz4oNA6gb9++9O3bV2isKStF1MBY4uX2799faBwYDyODgoKExnbEqPbtaxQn\nmjsXnnsOjh+3x89PGmTJnY/FMeTKysqrDI+bm9t1beUtqb6zJBULjDHROy0/1VKPzxKDLBpzN409\nd+6c0M+7ozehbt3gu++MB30ffmgcW1UlDbLkzsbmam+Kopj/3Kztz7VjXV1dhQV/PD09hTM1Tp8+\nLRy/LioqYt26dUKhFnt7e0JCQoSlNENDQ4UrHTMyMkhLSxMaW1xczJEjR4Ti5i4uLvTt2xcXF5d2\nj9Fq4e9/h88+05CV1Ze//c0XQaE9iaRLYLFB9vb2vqqXW319PXFxcVddc2Wlnqqq5j/tUTVrbm4W\nrjwDYz6uaF5tYWEhJ0+eFF73zJkzQiJBra2tFBYWCgvuX7hwQdjLvXjxonAX6PLycjIzM4VCVA0N\nDWRmZgpl5MyZoyc6OhMPj3JGjIC1azs8hUTSJbDYIM+ZM4e1a9diMBj4+OOPcXBwuCp+DAh7t/Bv\nsRrRfm+NjY3CB3Otra3CGSKmAzmR8abHdtG1dTrdbRsLYh1iLPm+TGP/4z/sGTjQGFv+3e/AQp0q\nicTm3PJQT1GUC0APQKPVann88cfNvwCrV6/mj3/8I0lJSTg6OqLVavnoo49uNIfwBk2t7UUq13Q6\nHdXV1cIHVQ0NDR16hL4SaxgYkbGqqt5Wg2xvby/087bkJmQa6+1tz44d8Mor8MYbRnGi1auNGRkS\nyZ1Ae7IsrrSE18UNNBrNLR/rRX/B9Xo9GRkZRERECBnG0tJSVFUVbu9TWVl50wqyW9HQ0IBGoxHy\nzk05xO3VALkSvV6PqqoWGVXRm5BOpxPas2ksWP5E4eAA//oXJCTAyy/DkCGwcSNYUEQokdgMm+sh\nd4SDBw9SX1/P8OHDhcabYqEiqVh6vd4ig1xVVYWnp6eQt2gqjhA51DN916YCkY7S2toqVOoOxrMC\nS8Md1grxPP887NgBlZVGcaLvvxfalkRiU2xikEUMy8WLF9m9ezfR0dGEh4cLrZudnY2fnx+eAs+s\nFRUVGAwGYYNcXl4uPNaUmSGSHWIy5u7u7kJrWxqm6SoGGWD0aEhPh4gIY0HJG2/cWJxIIukq3HY9\n5BtRWVnJ2rVrcXFxERZcr62tpaCgQFjwxqTJYJLS7AiqqlJZWSksnF5ZWYm7u7vQ478lxry1tZWW\nlh2JcEoAACAASURBVBbhNMH6+nrhVD1TmMbah6ChocYS6zlzjAd9c+dCB8QHJRKb0qX0kE0cOXIE\nnU7H3LlzhbsgHz58GEC4DDg/Px9PT0+h7I7y8nJ0Ol2HVeJMVFZWCne+NhXQiIw3pQeKete1tbXC\nY+vq6nBzcxNqTmAK09wsm8fFxXi498Yb8NVXRnEiwcw+iaRT6TJ6yDqdzqx9fP/997Nw4UICAgIs\nWrdv375CBtXk4YaHhwvFgE3aGSKZIaqqWhTuqKiowNnZWegw0SQuL+Ihq6pqkVxqXV2dRTcC+Okb\niaLAb39rrO47f94oTrRnj9ByEkmnoXSw4EIoArd371527tzJokWLblrg8dlnn1FVVcXLL78slMd6\nI0R62pkwpY+JZg2Y8p9FU8BEsx30ej319fVCcXNVVamursbV1bXDn9tkkLVardBTTUNDAy0tLUKe\nfUtLC1VVVfj7+7fr+87OhmnT4Nw5eOcdeOGFDi8pkXSUdhkCmwjUX1l9VVNTQ0VFBZcuXSI/P5+Z\nM2fi4OBAYmIiLi4uFhvj0tJSGhsbCQsLEzbGer0erVYrbIwB4YMxMMZCRQ/HtFqtkDEGY764l5eX\n8FhR7xjA1dVVODzl6OjYoaepPn2MinHz5sEvfwnHjxsNswU/bonEKtg8hvz222/zxRdfsG3bNior\nK82HUH379hVuW3QlycnJJCUlCYvrVFZWsnjxYs6ePSs0vqioiFWrVgmLIR06dIjdu3cLja2pqWHz\n5s3CZdMHDx7k1KlTQmPz8/PZu3ev0Peu0+lISUkRlkk9cuQI2dnZHRrj6WnUVv7d7+DDD+H++8GC\nnrQSiVWweQunKVOm0K1bN/z9/YU9op9i+vTpVFdXC3uYLS0t+Pr64u/vLzS+srKSkpISYQ85Oztb\n2DM3aUeLHmSmpqYSFhYmVNmYk5PD4cOHGTFiRIfHlpWVsXv3bvz9/YXODfbt20dISEiHM2q0WmMX\nkvh4Y4uoQYNgwwYYOLDDW5BIrIJNYsiHDh1iy5YtPxlDtpS8vDx69uwpHKawJrczdt3c3IyDg4PQ\n+m1tbTQ3NwulrhkMBmpra4UPUWtra3FychIqaGloaECn0wnrnQBkZMDDD0NpKXzyiTGcIZFYkXbF\nkG1ivTpbODw1NZXPP/+cQ4cOWTTPqVOnOtQh+1qam5tRVdWim4KiKBbFrp2cnITXt7OzE84j1mg0\nwgZRURQ8PT2FqwtdXV0tMsYAAwYYO1wnJsJjjxl1lqU4kcTW2MQgWytr4lpUVWXPnj0kJycTHR0t\n3IIejFq+SUlJHDhwQHiOpKSkG/YUbC8rV65kj2AuVl1dHStXrqS4uFho/OHDh9m1a5fQ2Pr6ejZt\n2kRpaanQ+NTUVI4dOyY0trCwkN27dwv3ELwSPz/Yvt140Pfmm8bqvqoqi6eVSNqNTQyyJT31boZO\np+Obb75h165dxMbGMnPmTGHD39bWxsaNG3F3d2fkyJt2q/pJSktLOXv2rLmxakepqKjg3LlzwjoS\n586d49y5c8LfwfHjx9ulT30jCgsLOXr0qPDPOTU11azq11HOnj3L7t27rXbTt7eH994zHvTt2GEU\nJ7pC7lsi6VRs3jHEGpSUlPDRRx9x8uRJxo4dy/Tp0y36hdy9ezdlZWU89NBDwtrNe/fuNafviWBS\nzBOVCs3KysLDw0PoMLKpqYmSkpJ2dXC5EUVFRWi1WqEDuYaGBqqqqoR78ZWVleHt7S18I7sZCxfC\nzp1QU2M0yps2WXV6ieSGdEkti5vR0tLC9u3b+eSTT2hpaWH+/PmMHj3aYr3lffv2kZCQQFRUlNAc\n5eXlnD59mkGDBgllVxgMBo4dO0avXr2Ecnmbm5s5e/Ysffv2Ffouzp8/j6qq9O7du8NjwWiQAwMD\nhYxiUVERYOzwLUJpaalwu6pbMXKkUZwoKspYSPK3v0lxIknnYhODLNqx41pSUlLYv38/sbGxvPDC\nC+aO1KJUVVXx/9s787Aor7P/f4ZFZgDZHBFBQdlRwqKCxi3iFsW4x924ZW3SpE3fpu3v19/V9k3e\npW3eLm+aNG3SXIkxLjFuGI1r3OKGrIqCsktkUZCdgZlh5vn98ZSpJjbVZ4ZhwPO5Li4V5znn8Dh+\n5zz3ue/vvXv3bgYNGmRVh+kjR47g6uqq2Cb06tWrNDU1Kd5dFxYWYjKZGDlypKLri4uLUavVBAUF\nPfC1BoOByspKxYJ648YNnJycFHlWt7e3c/v2bcW76/th6FD46ivZlOjnP5dNihR21hII/iV2yUNW\nil6vJzMzk6FDhxIcHMyECRMYOXKk4jjtneh0OjZv3owkSSxdulRx3nJxcTGFhYXMmDFDcV51eno6\nPj4+infoly9fxsvLS9F9MZvNFBUVERYWpii0VF5ejslksmp3HRAQoOj+V1VVASj6IHkQNBr45BM5\nE+OnP4XCQjlfediwbp1W8BBilx3ygzzKtre3U1tbC8hicfz4ccuBj6enp03EuLOzky1bttDU1MSK\nFSsUO6sZjUYOHjyIn5+f4gyPGzduUFFRQXJysiJBbGpqori4mLi4OEXhiuvXr9PW1kZMTMwDXwvy\nB5Krq6sim1KTyURlZaXif9OucEd37pC7UKngxz+G/fuhvFwuIjlxotunFTxk2GWH/M86hpjNZhob\nG6murqaqqoqvv/6aGzduMGTIEDZs2IBGo+GVV16xyiPhXjg7OxMUFMTEiRMVCUkXx48f5/bt26xe\nvVrxoeLx48dxd3dntMLysOzsbCRJUnz9lStXcHV1JSIiQtH1JSUlDBs2TFH8uKKiAqPRqLgBQWVl\nJVqt1qomug/KrFlw4YIcU54+Hf73f+U0OSuOMQQCC3YR5DtjyMeOHaO8vJzm5maam5stlXtdccRJ\nkybdJQ62FGOdTkdHRwd+fn7Mnj3b6vEGDRrE+PHjFcey6+rqKC0tZebMmYqKQcxmMzk5OYSHhysq\njDCbzRQUFBAZGalo/rq6Ourr6xXHvktKSnBycmKYgmd/s9nM9evXeeSRRxTNbQ2RkbI50erV8P3v\ny1V+77wDCutaBAILdhHkO8ulJUnCxcWFkJAQiwF8QEAA/v7+Nk9d+uYaNm3ahMFg4MUXX7QqTU6S\nJFQqFfHx8VatSavV8uKLL1pVZTZ16lTF1xsMBqKjo4mOjlZ0vU6nIyAgQHG4w2g0EhYWpqhCr7Gx\nkX79+ilO1bMWLy85jvzLX8J//Afk58OuXWClhbfgIccuXhZ5eXns2rWrW70s7oeioiLUarXijACQ\nd2afffYZkZGRJCYmKh6nvb3dZtknvZmuDzel11pbqm4LPvsM1q0DX1/YvRuSknp0OQLHxHG8LHoK\no9HIgQMHLB4XERERVokxyEJaX1+PyQqjA71ez5///GfFZdIg5w6fPXtWcY53a2srN27cUPwB2dHR\nYVUFZtf9syaHXKVS9bgYAyxZAmfPgosLTJoEmzb19IoEvRWH7KlnC6qqqnj//fe5cOGCpVecLfDw\n8ODZZ59VfIgGshiFhYVZlUd96dIlLly4oFjQMjIy+OCDDyztjx6Us2fP8rvf/U6xh8TWrVvZsWOH\nomv1ej1/+tOfuHLliqLru4P4eLmI5NFHYc0aOSPDRvVQgoeIHs2y6K65jh07RkZGBp6enqxatUpx\njuydFBUVcfHiRebPn684Z7kLd3d3FixYYNUY8+bNo7GxUXEsfPTo0Xh7eyvuLtL1pKEk/itJEgMH\nDlTsLNfS0oJGo1Hcg6+70Grh8GH40Y/gd7+DvDzYtk0OZQgE94NdYsiXL19m586d3RpD7uzsJCsr\ni6+++gqdTkdSUhIpKSk2SYkqKytj69atDBgwgHXr1im2idTr9aSlpZGSkqK43NdkMmE0Gu2a6iV4\ncD74QO7VFxwMaWmgsIhS0HdwnBhyd/ohS5JEdnY2b7/9NgcPHkSr1fLss88ye/Zsm4hWaWkpW7Zs\nwdfXl9WrVysWY0mSOHDgAAUFBXf1GHxQsrKyeOuttyytrx4Us9nMrl27+PrrrxWvIS8vT3GoA6C6\nulrxB7PJZLKJ1WZ38/TTcuFIayuMGyeLskDwr+i1fshd/ylVKhX5+fl4enry1FNPsXbtWkW+CPei\nsLDQsjNes2aNVS2nsrOzuXjxIpMnT1ZcjNLa2srx48cJCAhQHGq4fPkyeXl5tLa2Krq+qamJ3bt3\nk5mZqej6hoYG3nvvPcXNBMrKynjzzTctVXqOzPjxclw5OlruRvLGG2A29/SqBI6MXWLItt7RXLhw\ngSNHjvD9738fb29vFi9ejFqtturE/l5zHDx4kMGDB7Nq1SqrukhXVVVx4MABwsLCeOyxxxSPc/jw\nYQwGA6mpqYp+VpPJxIkTJwgICFCce9wlpEoPNbuM6EeMGKHo+itXruDs7Ky456G9GTIETp2C55+H\nX/xC7nD90UegMHwu6OM4vB9yS0sL2dnZbN++/S7vgju9HzQajc3E2Gw2c+jQIQ4cOEBkZCRr1661\nSoxbW1vZvn07Hh4eLFq0SPG9KC0tJS8vj4kTJ6LVahWNkZ2dTUNDA1OnTlV0v9rb28nOziY2NlbR\nDr3LZjQsLEzR9Uajkfz8fEaMGGH1wao90Whg40b4/e/lPOXx46G0tKdXJXBE7LJDvt9cWYPBQF1d\nHVVVVVRWVvL1119z+/ZtAPr3729JXxsyZIhNTIbuxcmTJzl//jzJyck8/vjjVn2YGAwGtmzZgk6n\nY926dYqFXa/Xs3fvXvz8/Jg0aZKiMYxGI6dOnSI4OFhx1klmZiYGg0FRZ2mQS6Wbm5uZOXOmouuv\nXr2KwWCwukKyJ1Cp4NVXITZWtvBMSpILSqZO7emVCRwJuwjyN3djJpOJCxcuoNVqiYiIoKOjg3ff\nffeugyJ3d3eGDBlCQkICERER+Pv72zQk8U1MJhPOzs6MGzcOrVZrtUeC2Wxm586d1NTUsHz5cqsc\nyQ4cOEBzczPr169XXF5++vRpWltbWbJkiaL72NnZSXp6OuHh4YrDBenp6Xh6eioOl1y8eBFvb29C\nQkIUXe8IzJjxD3OimTPlXfPLLwtzIoFMjwiyk5MTR44cIT4+noiICNzc3AgPD8fb2xutVsvgwYPx\n8fHpVgG+ky+//JLy8nLWr1+PRqOxiWFNQUEBhYWFpKamKvY5BsjPz7ccBiqtMqyvr+fMmTPExsYq\nPlDMyMigra1N8e741q1blJSUkJKSouiQt6WlhdLSUiZOnGi390V3ER4O58/DU0/BD34Aubnw7rvC\nnEhgJ0H+ZvqZSqXiJz/5iSWFTKVSMXfuXHss5Z6o1WoGDRqEyWSyWSnuiBEjWLt2rSInsy66Sr8D\nAwOZPHmy4nEOHTqEs7Oz4lCBXq/n9OnThIaGKv55zp8/j4uLC2PGjFF0fU5ODpIk9cpwxb3o3182\nI/r3f4fXX5cbqe7aBTZKEBL0UnoshtyThQ1tbW18+eWXhIWFMXLkSMaPH2+TXZckSRw9epS4uDgG\nDRpklRgDuLq6snTpUjw8PBSnDra2tlJZWcljjz2muLLt3Llz6HQ6pioMeLa1tXHp0iUSEhIUxdFN\nJhOZmZmEhYUxYMAARWtwRJycZEGOj5fLrceMkUVZYa8DQR/ALoLcE14W96Kzs5PMzExOnDiB0Wi0\ndAqx1SNwfX09mZmZlh23UiRJoqqqiqCgIKvNkDw9PXnxxRcVF7QAREdH4+LiorhVUkNDA56enowb\nN07R9ZWVlbS2tjJnzhxF1zs6ixZBRIQcV548Gd57D9au7elVCXoCu5ROFxQUsH379h6z3zSZTOTm\n5nLq1Cmam5sJCwtj1qxZitPH7jV+1w62sbHRKn9jkA+v9uzZw+rVq60yILp27RoREREO4YhmNput\nWkdjYyNeXl4O8bN0F7dvw9KlcOwY/PCH8OabsoOcoE/gOKXT3Wk8/10YDAYyMjJ4++232bdvH15e\nXqxevZpVq1bZTIybmpr429/+Rnp6OoDVYgwQFRXFY489pri1EcgVbdu2bSMrK0vxGNXV1ezcuZM2\nK9os37hxg87OTsVCav57aZuPj0+fFmOAAQPg0CH5oO+Pf5TbRf0961PwkNDn3N66uHXrFh9++CEd\nHR0EBgaSmppKeHi4TU/oKyoq2L59+13hD2uora3F19cXtVrNlClTrBorJCSEJ554goSEBMVjlJaW\nUlZWpjh+3dbWxscff0xCQgKpqamKxti9ezcqlYpFixYpur634eIii3FCglzdl5ws+2DExvb0ygT2\nwO499boLSZK4cuUKnZ2dJCQkoNVqGTlyJHFxcQwdOtSmQixJEllZWRw4cAAfHx/Wrl2r2L2ti7q6\nOj766CPCw8NZuHCh4nHMZjM6nQ5PT0+rPJsBJkyYwOjRoxUfwKrVambPnq04Di5JEmq12qpKyd7K\nunWyB8aiRbI50ccfy78X9G3s8gzYXXmjBoPBUk6tUqk4c+YM2dnZgJzr/MQTTxAcHGzT+Ts6Oti5\ncyf79+8nNDSUZ5991moxrq+v5+OPP0alUlmV3gZw6tQp3n33XatM+dva2iz31ZpsGGdnZxITExWH\nh1QqFXPmzCElJUXxGnoz48bJ5kSxsbB4MfzqV8KcqK9jlx2yrWLIkiRx69YtysvLKS0tpbS0FJVK\nxWuvvYarqysrV65UbHp+P1RUVLBr1y5aWlqYNm0a48ePtzqu2dDQwMaNGzGZTKxdu9aqtK6SkhJO\nnjxJfHy8VebtBw4c4Nq1a7z66quKd6dpaWkMHTqUUaNGKbq+paWFxsZGq7NMejuBgbKN5wsvyCly\nFy/Ku2UH8+YX2AiHdnvT6XRUVlZSU1NDVVUV169ft3gJ+/j4MGrUKKKjoy0xzu7sIJGdnc2+ffvw\n8fFhw4YNilPA7qRLjI1GI2vWrMHf31/xWLdv32bHjh34+/srjteCXBl45coVpk6dqliMy8rKyM3N\ntSqufuLECXJzc/nhD3/ocJ1B7I1aDR9+CImJ8G//JreJSksDKxJwBA5Kj+yQzWYznZ2d6HQ6dDod\nfn5+qNVqKisruXDhApMmTUKr1VJQUMC+ffsA8PX1JSoqipCQEIYNG2aTbIb7oStdKyQkhNGjRzN9\n+nSrcnq7uHnzJp988gkmk4nVq1cTYEX/+I6ODrZu3YqTkxMrVqxQnPfd1tbG/v37GTx4sOISabPZ\nzOHDh/H29lacd1xXV0dOTg5JSUkPvRh3oVLJ2RexsXJqXFISfPqp7I0h6DvYfYf8+uuvfysXecWK\nFURGRtLe3k55ebnlUK7L/jIgIMDulX2SJLF37146OjpYunQpAwYMsFlhwvXr19m6dStubm6sWbPG\nqhi02Wxmx44dNDQ0sGbNGsUfVJIkkZaWhl6vZ/78+YpDMenp6dTU1LBkyRLFFpnHjx/HxcXF6nh6\nX2TaNMjIkItIZs2C//kfOWe5l9t7CP6OXQTZy8vL8vsJEybg4uKCi4sLGo0Gd3d3ixNaeHg4r776\nquW1/fv3t/sOqavIQ6VS4ebmhqenJ5Ik2fRg8MyZM5YOJ0o7f4Asop9//jklJSXMnTvXKhe08+fP\nU1RUxOzZsxVXGTY1NXH8+HEiIiKIiYlRNEZVVRX5+flMnjzZqg4tfZnQUDh3Ti63/tGPZHOiv/5V\nDm0Iejd2EeQ7e+pNmzbNHlM+MCaTiUuXLnHy5EkWL17M0KFDmTVrls3GlyQJg8GAm5sbixcvprOz\n02rBOXr0KLm5uTz22GOKD89AFsGjR48SFRVFUlKSojEkSeKLL74AUNzRRJIkjhw5gkajYfz48YrW\n8bDg6Qk7dsB//Af88peyOdHu3WCDow1BD2IXQXbkCqsuIT516hSNjY0EBgbafL2SJLFr1y4aGxst\nXattEYd2d3cnKSnJqrZQ7e3t7NixA09PT+bPn6/4SSA/P5/CwkJmzJihOGySn59PeXk5qampNrk/\nfR0nJ7ktVFycbOXZZU706KM9vTKBUuy+Q3YU9Ho9OTk5pKenW4R49uzZRERE2DxvWqVSERgYSEBA\ngE3Evq2tDQ8PDyZMmGB1OKW+vh6j0cjSpUsVF/C0tLSwf/9+AgMDFR/kGY1GDh8+zKBBg6wuaHnY\nWLBADmHMnw9Tpsjeyhs29PSqBEroEYP6nqShoYH09HRycnIwGAwMHTq024Q4Ly8PtVpNREQEj9po\n25KVlcWRI0fYsGGDTbqoBAUF8corr1jVo66zsxN/f3+eeOIJxR8458+fp7m52aq+gw8zsbHyYd/y\n5fD003Jc+Xe/g17UelCAnQTZYDDYY5p/itFoxMnJCWdnZ/Ly8sjIyGDkyJGMHTvWJvnE38RgMHDw\n4EFycnKIiooiIiLCZmMHBQURExNjtS9wXl4ejY2NTJw40eqGob6+vqxbt86qMZKTk3t9e6aexs8P\nvvgCfvpTuTXU5cuwfTvYyEdLYAf6/A65oqKCzZs3M3/+fEaMGMGYMWNITEzstuyN8vJy0tLSLGJn\ni7JfSZIoKytj+PDhBAQEMH/+fKvHu3TpEgaDgfHjxys2D6qtreX06dPMmjVLcbhDkiRMJhNubm7E\nxcUpGkPwD1xc5J1xfDw895ycr5yWJseZBY6PXZ4NzXYqwNfr9RQUFLB7924yMzMBGDRoECNHjrRU\njbm7u3eLGBuNRg4ePMjGjRtRqVSsX7+eadOmWf34LUkSBw8eZNOmTRQWFtpkrSqVimXLlrF8+XLF\nYgxQVFREcXGxVWcEWVlZ/PWvf6W1tVXxGIJvs2YNnDoFBoN8yLdjR0+vSHA/9OqOISaTiRs3blBW\nVkZpaSmVlZWYzWY0Go2l2MLNzY158+Z1y/xdFBYWcvDgQRoaGkhOTmbatGk2+Zk7OztJS0vj8uXL\njBs3zqpmqSAfvh0+fJjU1FQ0Go3VHiPjx48nPj7eqvQ9FxcXtFqtyDnuBpKTZXOixYthyRL4f/9P\n9sMQIXrHpdekvd2ZTXDq1CmKioqorq7GZDKhUqkYPHgw48ePJzQ0lJCQELsdDB0+fJhz586h1Wqt\nbmp6Jzqdju3bt3P9+nWmT59udd+/9vZ2Nm/eTENDAxMmTLDKEvXKlSv4+voSGBhotZAmJCRY5dks\n+G4GD4bjx+Gll+Sc5UuXYNMmuKNWS+BAOJQgG41GWlpaaG5uRqfTMWLECAD27t3L9evXefnllwE5\nVcvJyYnk5GSGDh3KsGHD7OK53IVer7d49UZHR+Ph4cG4ceOsevy/k5s3b7Jt2zZaWlpYtGgRjzzy\niFXjdXR08Mknn1BXV8eKFSus8s2oqqpiz549DB8+nJUrVyoeJzc3F7PZTGJiokNl4fRF3Nzg/fdl\n0/sf/lC29UxLk/v4CRyLHuk6nZ2dTXFxMR0dHXd9dTm5gSzi0dHRODk5ERgYiEajseySFyxYYI9l\n35PW1lb+8pe/EBsby6xZswgODiY4ONhm41+9epVdu3ahVqtZv3691Vkger2ezZs3U1NTw9KlS63q\n0dfc3My2bdvw8PCw6mCxrq6O/fv3ExwcTGJiouJxBPePSgXf/z6MHCmHL5KTYds2ePzxnl6Z4E7s\n3jHkzt3QgAEDeOutt9Bqtbi5udG/f3+8vLzw8vLC29vb8toxY8bYY5n/FLPZTFVVFUOGDMHT05OE\nhATFXg3fRWZmJvv37ycoKIhly5ZZffhoMBjYsmULlZWVPPnkk0RFRSkey2g08umnn6LX69mwYYPi\nUIXJZGLXrl24urqyYMECsTu2Mykpcr7yggWQmgq/+Y1s6Sn+GRwDu3cf7Ymu00rp7Ozk4sWLnDlz\nhqamJos37/Tp07tlvuHDh5OUlMTMmTOtPnDr6Ohgy5Yt3Lhxg0WLFlnCP0rocoKrqqpi+fLlis2H\nAI4dO0Z1dbVNPnAEyhg+HM6eldtEvfaaXETy/vtgx6if4J9gF0Hubb4E7e3t5Obmcu7cOVpaWggM\nDGTmzJnd0o2ksLCQwsJC5syZw4ABA6wyl+9Cp9OxadMmbt26xeLFixk5cqRV4x07dowrV64wffp0\nq3bZhYWFnD17ltGjRxMdHW3VmgTW4eEhF43813/J2RdXr8KePTBkSE+v7OHGoQ71epqbN29y4cIF\n8vLyMBqNhISEMH/+fEJDQ7vt0bq4uJjKykr0er3NPJ/d3Nzw8/Nj2rRphIeHWzXW+fPnOX36NKNG\njbLKga2+vp5du3YxePBgHheBS4dApYKf/xweeQRWr5bNiXbuBIW9CQQ2wC6CbKvsg+5CkiQ++eQT\nSktLcXFxITY2luTkZAYPHtwt85WVldGvXz+CgoKYMWMGKpXKJn0Hb926hbu7O56enixZssTq8erq\n6jh8+DAxMTHMmTNH8YeS0Whk+/btqFQqq4zrBd3DvHmQni7/mpIC77wDzz7b06t6OHHonnrdyfXr\n1ykvL+exxx5DpVKh1WoJDQ0lMTGx29rO6/V6vvzySzIyMoiIiGDlypU2E6f29nY+/PBDQkJCWL58\nuU3G1Gq1rFy5kmHDhln1lHPo0CFu3rzJypUr8fX1tcnaBLYlJgYuXIAVK+SS64sX4Q9/EOZE9uah\nCVmYTCbKy8sZPnw4Tk5OXLlyhby8PJKTk9FoNMyePbvb5pYkifz8fA4dOkRLSwtjx461uVG/RqMh\nNTXVJuY8ZWVlSJJEaGio1SEPgLFjxxIQEGBTkyWB7fH1hf374f/8H3jzTdmc6LPPwIoOY4IHpE+7\nvbW0tFBaWkpxcTFFRUXo9XrWr19PcHAwU6ZMsUk2w7/i9u3bfPHFF5SWlhIQEMDSpUsZYqOTE7PZ\nzJEjRwgNDSUiIsLqApKuMfft24darWb48OFWey37+voycOBAq/oGCuyHszP89reyOdEzz8hx5bQ0\nuahE0P30qR2yTqfj66+/tnhb1NbWArKhUExMDDExMZb+fd0Vluiio6ODr776ivT0dFxcXJg9ezZj\nxoyx2b1obW1lx44dXL9+HRcXF5vtPp2cnFi1ahVubm5WiXFtbS3vv/8+kydPZuLEiTZZm8B+o3X8\nQQAAGDhJREFUrFoFUVGwcCGMHw8ffSR3uxZ0L712h9xVrOHm5sbAgQO5ffs2b7/9NiAb1oSEhBAf\nH09oaCgBAQF2LUCQJImPPvqImzdvEh8fz/Tp022aMldRUcFnn31GR0cHCxcutIltZVlZGUVFRcyY\nMcPijGcNvr6+jBo1ivj4eKvHEvQMY8bIRSRPPgnLlsn5ym+8Ie+iBd2DQ/shm81mmpubaWxspLGx\nkbq6OrRaLQkJCXR2dvLBBx8watQo5s6di5+fHzNmzCAoKIigoKBuD0Xca60FBQVER0fj7OzMjBkz\n8PDwsMo34ptIkkR6ejpHjhzBx8eH1atXW1Wk0UVBQQE7d+7Ez8+PyZMnW5V+19HRgdlsxt3d3aZN\nYgU9Q0AAHDsml13/93/L5kSbN4MVzdIF34FdVOtOP+Rbt27h7+8PyE0t1Wo1oaGhAHzxxRcWY6Hm\n5maam5vvquxzcnJi1KhRJCQk0K9fP1avXm2JTapUqh7tVJyfn8/OnTuZP38+CQkJVnlG3IvW1lbS\n0tIoLi4mKiqKBQsW2CRvOScnh88//5ygoCBWrlxp1ZhGo5GtW7ei1+t57rnnHOIwV2A9/frBX/8K\niYnwyiswdizs3QtWusEK7oHdY8hHjx61uIQdPHiQQYMGWQS5qqqKzs5O3N3dCQ4OxsfH564vb2/v\nu3KabS16D0JnZyeXLl3C2dmZ+Ph4YmJiWL58udWexfeitLSUnTt3YjAYSE1NZcyYMTYJwZw5c4aj\nR48SFhbG0qVLrfJwNplM7Nixg4qKChYvXizEuI+hUsH3vgcjRsghjORk2LoVujE56aHELoJ8Z/jg\nzpZGGzZsuCsP95lnnrHHcqyira2NjIwMMjMzaWtrIyIigvj4eJydna0qK/4uXFxc8Pb2ZuHChTbJ\nVjCbzRw6dIgLFy4QGxvLggULrCrekSSJvXv3UlhYSGpqKrGxsVavUeCYPPaYbHq/YAHMmQO//rXs\nhyHMiWyD3c2F7qx+8/Hxsff0iqmpqSE9PZ28vDxMJhMRERGMHTvWsru3NSUlJVRVVTFp0iSCg4N5\n9tlnbbIr1uv17Nixg+LiYsaNG8fMmTOtGleSJD7//HMuXbpESkoKSUlJVq9R4NiEhMDp07Bhg9xQ\nNTcX/vY36ObEpYcCuwtyb0Kv15OXl0dOTg5VVVW4urqSmJjI2LFj0XZ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\n",
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\n",
       "text/plain": [
-       "<matplotlib.figure.Figure at 0x7f13a1e5eac8>"
+       "<Figure size 432x360 with 1 Axes>"
       ]
      },
-     "metadata": {},
+     "metadata": {
+      "needs_background": "light"
+     },
      "output_type": "display_data"
     }
    ],
@@ -321,12 +323,10 @@
   {
    "cell_type": "code",
    "execution_count": 11,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "model = cobra.test.create_test_model('textbook')\n",
+    "model = load_model('textbook')\n",
     "difference = model.problem.Variable('difference')"
    ]
   },
@@ -367,11 +367,11 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "-5.234680806802543\n",
-      "-5.2346808068025386\n",
-      "-5.234680806802525\n",
-      "-1.8644444444444337\n",
-      "-1.8644444444444466\n"
+      "-5.234680806802513\n",
+      "-5.234680806802513\n",
+      "-5.234680806802513\n",
+      "-0.9322222222222226\n",
+      "-0.9322222222222231\n"
      ]
     }
    ],
@@ -382,11 +382,18 @@
     "        model.optimize()\n",
     "        print(model.solver.variables.difference.primal)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -400,7 +407,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.3"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/deletions.ipynb b/documentation_builder/deletions.ipynb
index 2f91f9c62..85fe76739 100644
--- a/documentation_builder/deletions.ipynb
+++ b/documentation_builder/deletions.ipynb
@@ -2,70 +2,57 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "# Simulating Deletions"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 1,
+   "metadata": {},
    "outputs": [],
    "source": [
     "import pandas\n",
     "from time import time\n",
     "\n",
-    "import cobra.test\n",
+    "from cobra.io import load_model\n",
     "from cobra.flux_analysis import (\n",
     "    single_gene_deletion, single_reaction_deletion, double_gene_deletion,\n",
     "    double_reaction_deletion)\n",
     "\n",
-    "cobra_model = cobra.test.create_test_model(\"textbook\")\n",
-    "ecoli_model = cobra.test.create_test_model(\"ecoli\")"
+    "cobra_model = load_model(\"textbook\")\n",
+    "ecoli_model = load_model(\"iJO1366\")"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Knocking out single genes and reactions"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "A commonly asked question when analyzing metabolic models is what will happen if a certain reaction was not allowed to have any flux at all. This can tested using cobrapy by"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
    "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true,
     "tags": []
    },
    "outputs": [
     {
-     "output_type": "stream",
      "name": "stdout",
-     "text": "complete model:  <Solution 0.874 at 0x7f8130c3c760>\npfk knocked out:  <Solution 0.704 at 0x7f8130c3c070>\n"
+     "output_type": "stream",
+     "text": [
+      "complete model:  <Solution 0.874 at 0x7fd813bf3390>\n",
+      "pfk knocked out:  <Solution 0.704 at 0x7fd813bf31d0>\n"
+     ]
     }
    ],
    "source": [
@@ -84,16 +71,19 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 3,
    "metadata": {
-    "collapsed": false,
     "tags": []
    },
    "outputs": [
     {
-     "output_type": "stream",
      "name": "stdout",
-     "text": "complete model:  <Solution 0.874 at 0x7f8131dbc7c0>\npfkA knocked out:  <Solution 0.874 at 0x7f816ddee820>\npfkB knocked out:  <Solution 0.704 at 0x7f8130c3cf40>\n"
+     "output_type": "stream",
+     "text": [
+      "complete model:  <Solution 0.874 at 0x7fd813bf3c18>\n",
+      "pfkA knocked out:  <Solution 0.874 at 0x7fd813bf35c0>\n",
+      "pfkB knocked out:  <Solution 0.704 at 0x7fd813bf3588>\n"
+     ]
     }
    ],
    "source": [
@@ -107,32 +97,22 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Single Deletions"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Perform all single gene deletions on a model"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 4,
+   "metadata": {},
    "outputs": [],
    "source": [
     "deletion_results = single_gene_deletion(cobra_model)"
@@ -140,31 +120,194 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "These can also be done for only a subset of genes"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 5,
+   "metadata": {},
    "outputs": [
     {
-     "output_type": "execute_result",
      "data": {
-      "text/plain": "        ids    growth   status\n0   {b0351}  0.873922  optimal\n1   {b0727}  0.858307  optimal\n2   {b2587}  0.873922  optimal\n3   {b0474}  0.873922  optimal\n4   {b3734}  0.374230  optimal\n5   {b0726}  0.858307  optimal\n6   {b3735}  0.374230  optimal\n7   {b1241}  0.873922  optimal\n8   {b1276}  0.873922  optimal\n9   {b1849}  0.873922  optimal\n10  {b3732}  0.374230  optimal\n11  {s0001}  0.211141  optimal\n12  {b0118}  0.873922  optimal\n13  {b0356}  0.873922  optimal\n14  {b2296}  0.873922  optimal\n15  {b0116}  0.782351  optimal\n16  {b1478}  0.873922  optimal\n17  {b3115}  0.873922  optimal\n18  {b3736}  0.374230  optimal\n19  {b3733}  0.374230  optimal",
-      "text/html": "<div>\n<style scoped>\n    .dataframe tbody tr th:only-of-type {\n        vertical-align: middle;\n    }\n\n    .dataframe tbody tr th {\n        vertical-align: top;\n    }\n\n    .dataframe thead th {\n        text-align: right;\n    }\n</style>\n<table border=\"1\" class=\"dataframe\">\n  <thead>\n    <tr style=\"text-align: right;\">\n      <th></th>\n      <th>ids</th>\n      <th>growth</th>\n      <th>status</th>\n    </tr>\n  </thead>\n  <tbody>\n    <tr>\n      <th>0</th>\n      <td>{b0351}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>1</th>\n      <td>{b0727}</td>\n      <td>0.858307</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>2</th>\n      <td>{b2587}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>3</th>\n      <td>{b0474}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>4</th>\n      <td>{b3734}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>5</th>\n      <td>{b0726}</td>\n      <td>0.858307</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>6</th>\n      <td>{b3735}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>7</th>\n      <td>{b1241}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>8</th>\n      <td>{b1276}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>9</th>\n      <td>{b1849}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>10</th>\n      <td>{b3732}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>11</th>\n      <td>{s0001}</td>\n      <td>0.211141</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>12</th>\n      <td>{b0118}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>13</th>\n      <td>{b0356}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>14</th>\n      <td>{b2296}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>15</th>\n      <td>{b0116}</td>\n      <td>0.782351</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>16</th>\n      <td>{b1478}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>17</th>\n      <td>{b3115}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>18</th>\n      <td>{b3736}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>19</th>\n      <td>{b3733}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n  </tbody>\n</table>\n</div>"
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>ids</th>\n",
+       "      <th>growth</th>\n",
+       "      <th>status</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>{b1849}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>{b1478}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>{b1276}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>{b0351}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>{b3733}</td>\n",
+       "      <td>0.374230</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5</th>\n",
+       "      <td>{b1241}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>6</th>\n",
+       "      <td>{b0116}</td>\n",
+       "      <td>0.782351</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>7</th>\n",
+       "      <td>{b0727}</td>\n",
+       "      <td>0.858307</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>8</th>\n",
+       "      <td>{b0356}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>9</th>\n",
+       "      <td>{b2587}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>10</th>\n",
+       "      <td>{b0118}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>11</th>\n",
+       "      <td>{b0726}</td>\n",
+       "      <td>0.858307</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>12</th>\n",
+       "      <td>{b3736}</td>\n",
+       "      <td>0.374230</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>13</th>\n",
+       "      <td>{b3735}</td>\n",
+       "      <td>0.374230</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14</th>\n",
+       "      <td>{b2296}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>15</th>\n",
+       "      <td>{b3115}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>16</th>\n",
+       "      <td>{b3732}</td>\n",
+       "      <td>0.374230</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>17</th>\n",
+       "      <td>{b0474}</td>\n",
+       "      <td>0.873922</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>18</th>\n",
+       "      <td>{s0001}</td>\n",
+       "      <td>0.211141</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>19</th>\n",
+       "      <td>{b3734}</td>\n",
+       "      <td>0.374230</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "        ids    growth   status\n",
+       "0   {b1849}  0.873922  optimal\n",
+       "1   {b1478}  0.873922  optimal\n",
+       "2   {b1276}  0.873922  optimal\n",
+       "3   {b0351}  0.873922  optimal\n",
+       "4   {b3733}  0.374230  optimal\n",
+       "5   {b1241}  0.873922  optimal\n",
+       "6   {b0116}  0.782351  optimal\n",
+       "7   {b0727}  0.858307  optimal\n",
+       "8   {b0356}  0.873922  optimal\n",
+       "9   {b2587}  0.873922  optimal\n",
+       "10  {b0118}  0.873922  optimal\n",
+       "11  {b0726}  0.858307  optimal\n",
+       "12  {b3736}  0.374230  optimal\n",
+       "13  {b3735}  0.374230  optimal\n",
+       "14  {b2296}  0.873922  optimal\n",
+       "15  {b3115}  0.873922  optimal\n",
+       "16  {b3732}  0.374230  optimal\n",
+       "17  {b0474}  0.873922  optimal\n",
+       "18  {s0001}  0.211141  optimal\n",
+       "19  {b3734}  0.374230  optimal"
+      ]
      },
+     "execution_count": 5,
      "metadata": {},
-     "execution_count": 6
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -173,31 +316,194 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "This can also be done for reactions"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 6,
+   "metadata": {},
    "outputs": [
     {
-     "output_type": "execute_result",
      "data": {
-      "text/plain": "                     ids    growth   status\n0               {ACALDt}  0.873922  optimal\n1               {ATPS4r}  0.374230  optimal\n2              {EX_ac_e}  0.873922  optimal\n3                {AKGDH}  0.858307  optimal\n4                 {ACKr}  0.873922  optimal\n5              {ETOHt2r}  0.873922  optimal\n6                   {CS}  0.000000  optimal\n7               {ALCD2x}  0.873922  optimal\n8               {ACONTa}  0.000000  optimal\n9              {D_LACt2}  0.873922  optimal\n10                {ADK1}  0.873922  optimal\n11  {Biomass_Ecoli_core}  0.000000  optimal\n12                {ATPM}  0.916647  optimal\n13               {CYTBD}  0.211663  optimal\n14               {ACt2r}  0.873922  optimal\n15                {CO2t}  0.461670  optimal\n16               {ACALD}  0.873922  optimal\n17                 {ENO}  0.000000  optimal\n18              {AKGt2r}  0.873922  optimal\n19              {ACONTb}  0.000000  optimal",
-      "text/html": "<div>\n<style scoped>\n    .dataframe tbody tr th:only-of-type {\n        vertical-align: middle;\n    }\n\n    .dataframe tbody tr th {\n        vertical-align: top;\n    }\n\n    .dataframe thead th {\n        text-align: right;\n    }\n</style>\n<table border=\"1\" class=\"dataframe\">\n  <thead>\n    <tr style=\"text-align: right;\">\n      <th></th>\n      <th>ids</th>\n      <th>growth</th>\n      <th>status</th>\n    </tr>\n  </thead>\n  <tbody>\n    <tr>\n      <th>0</th>\n      <td>{ACALDt}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>1</th>\n      <td>{ATPS4r}</td>\n      <td>0.374230</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>2</th>\n      <td>{EX_ac_e}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>3</th>\n      <td>{AKGDH}</td>\n      <td>0.858307</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>4</th>\n      <td>{ACKr}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>5</th>\n      <td>{ETOHt2r}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>6</th>\n      <td>{CS}</td>\n      <td>0.000000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>7</th>\n      <td>{ALCD2x}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>8</th>\n      <td>{ACONTa}</td>\n      <td>0.000000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>9</th>\n      <td>{D_LACt2}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>10</th>\n      <td>{ADK1}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>11</th>\n      <td>{Biomass_Ecoli_core}</td>\n      <td>0.000000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>12</th>\n      <td>{ATPM}</td>\n      <td>0.916647</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>13</th>\n      <td>{CYTBD}</td>\n      <td>0.211663</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>14</th>\n      <td>{ACt2r}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>15</th>\n      <td>{CO2t}</td>\n      <td>0.461670</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>16</th>\n      <td>{ACALD}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>17</th>\n      <td>{ENO}</td>\n      <td>0.000000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>18</th>\n      <td>{AKGt2r}</td>\n      <td>0.873922</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>19</th>\n      <td>{ACONTb}</td>\n      <td>0.000000</td>\n      <td>optimal</td>\n    </tr>\n  </tbody>\n</table>\n</div>"
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>ids</th>\n",
+       "      <th>growth</th>\n",
+       "      <th>status</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>{AKGt2r}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>{D_LACt2}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>{Biomass_Ecoli_core}</td>\n",
+       "      <td>0.000000e+00</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>{ETOHt2r}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>{ADK1}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5</th>\n",
+       "      <td>{ACONTb}</td>\n",
+       "      <td>3.279963e-17</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>6</th>\n",
+       "      <td>{ACt2r}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>7</th>\n",
+       "      <td>{ACONTa}</td>\n",
+       "      <td>3.344590e-15</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>8</th>\n",
+       "      <td>{ACKr}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>9</th>\n",
+       "      <td>{ALCD2x}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>10</th>\n",
+       "      <td>{ATPS4r}</td>\n",
+       "      <td>3.742299e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>11</th>\n",
+       "      <td>{ACALD}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>12</th>\n",
+       "      <td>{ENO}</td>\n",
+       "      <td>1.357454e-16</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>13</th>\n",
+       "      <td>{EX_ac_e}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14</th>\n",
+       "      <td>{ACALDt}</td>\n",
+       "      <td>8.739215e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>15</th>\n",
+       "      <td>{CS}</td>\n",
+       "      <td>4.757918e-15</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>16</th>\n",
+       "      <td>{AKGDH}</td>\n",
+       "      <td>8.583074e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>17</th>\n",
+       "      <td>{CO2t}</td>\n",
+       "      <td>4.616696e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>18</th>\n",
+       "      <td>{CYTBD}</td>\n",
+       "      <td>2.116629e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>19</th>\n",
+       "      <td>{ATPM}</td>\n",
+       "      <td>9.166475e-01</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                     ids        growth   status\n",
+       "0               {AKGt2r}  8.739215e-01  optimal\n",
+       "1              {D_LACt2}  8.739215e-01  optimal\n",
+       "2   {Biomass_Ecoli_core}  0.000000e+00  optimal\n",
+       "3              {ETOHt2r}  8.739215e-01  optimal\n",
+       "4                 {ADK1}  8.739215e-01  optimal\n",
+       "5               {ACONTb}  3.279963e-17  optimal\n",
+       "6                {ACt2r}  8.739215e-01  optimal\n",
+       "7               {ACONTa}  3.344590e-15  optimal\n",
+       "8                 {ACKr}  8.739215e-01  optimal\n",
+       "9               {ALCD2x}  8.739215e-01  optimal\n",
+       "10              {ATPS4r}  3.742299e-01  optimal\n",
+       "11               {ACALD}  8.739215e-01  optimal\n",
+       "12                 {ENO}  1.357454e-16  optimal\n",
+       "13             {EX_ac_e}  8.739215e-01  optimal\n",
+       "14              {ACALDt}  8.739215e-01  optimal\n",
+       "15                  {CS}  4.757918e-15  optimal\n",
+       "16               {AKGDH}  8.583074e-01  optimal\n",
+       "17                {CO2t}  4.616696e-01  optimal\n",
+       "18               {CYTBD}  2.116629e-01  optimal\n",
+       "19                {ATPM}  9.166475e-01  optimal"
+      ]
      },
+     "execution_count": 6,
      "metadata": {},
-     "execution_count": 7
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -206,41 +512,166 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Double Deletions"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Double deletions run in a similar way."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 7,
+   "metadata": {},
    "outputs": [
     {
-     "output_type": "execute_result",
      "data": {
-      "text/plain": "               ids  growth   status\n0          {b2935}  0.8739  optimal\n1   {b2465, b2464}  0.8739  optimal\n2   {b0008, b2464}  0.8739  optimal\n3   {b0008, b3919}  0.7040  optimal\n4   {b3919, b2465}  0.7040  optimal\n5   {b0008, b2935}  0.8739  optimal\n6          {b3919}  0.7040  optimal\n7   {b2465, b2935}  0.8739  optimal\n8   {b0008, b2465}  0.8739  optimal\n9   {b3919, b2464}  0.7040  optimal\n10         {b2464}  0.8739  optimal\n11         {b0008}  0.8739  optimal\n12  {b3919, b2935}  0.7040  optimal\n13  {b2935, b2464}  0.8739  optimal\n14         {b2465}  0.8739  optimal",
-      "text/html": "<div>\n<style scoped>\n    .dataframe tbody tr th:only-of-type {\n        vertical-align: middle;\n    }\n\n    .dataframe tbody tr th {\n        vertical-align: top;\n    }\n\n    .dataframe thead th {\n        text-align: right;\n    }\n</style>\n<table border=\"1\" class=\"dataframe\">\n  <thead>\n    <tr style=\"text-align: right;\">\n      <th></th>\n      <th>ids</th>\n      <th>growth</th>\n      <th>status</th>\n    </tr>\n  </thead>\n  <tbody>\n    <tr>\n      <th>0</th>\n      <td>{b2935}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>1</th>\n      <td>{b2465, b2464}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>2</th>\n      <td>{b0008, b2464}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>3</th>\n      <td>{b0008, b3919}</td>\n      <td>0.7040</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>4</th>\n      <td>{b3919, b2465}</td>\n      <td>0.7040</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>5</th>\n      <td>{b0008, b2935}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>6</th>\n      <td>{b3919}</td>\n      <td>0.7040</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>7</th>\n      <td>{b2465, b2935}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>8</th>\n      <td>{b0008, b2465}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>9</th>\n      <td>{b3919, b2464}</td>\n      <td>0.7040</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>10</th>\n      <td>{b2464}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>11</th>\n      <td>{b0008}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>12</th>\n      <td>{b3919, b2935}</td>\n      <td>0.7040</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>13</th>\n      <td>{b2935, b2464}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>14</th>\n      <td>{b2465}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n  </tbody>\n</table>\n</div>"
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>ids</th>\n",
+       "      <th>growth</th>\n",
+       "      <th>status</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>{b2465, b3919}</td>\n",
+       "      <td>0.7040</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>{b2935, b2464}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>{b0008, b2465}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>{b2465}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>{b0008}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5</th>\n",
+       "      <td>{b0008, b2464}</td>\n",
+       "      <td>0.8648</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>6</th>\n",
+       "      <td>{b2465, b2935}</td>\n",
+       "      <td>-0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>7</th>\n",
+       "      <td>{b0008, b3919}</td>\n",
+       "      <td>0.7040</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>8</th>\n",
+       "      <td>{b2465, b2464}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>9</th>\n",
+       "      <td>{b0008, b2935}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>10</th>\n",
+       "      <td>{b3919}</td>\n",
+       "      <td>0.7040</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>11</th>\n",
+       "      <td>{b2464}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>12</th>\n",
+       "      <td>{b2935}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>13</th>\n",
+       "      <td>{b2935, b3919}</td>\n",
+       "      <td>0.7040</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14</th>\n",
+       "      <td>{b3919, b2464}</td>\n",
+       "      <td>0.7040</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "               ids  growth   status\n",
+       "0   {b2465, b3919}  0.7040  optimal\n",
+       "1   {b2935, b2464}  0.8739  optimal\n",
+       "2   {b0008, b2465}  0.8739  optimal\n",
+       "3          {b2465}  0.8739  optimal\n",
+       "4          {b0008}  0.8739  optimal\n",
+       "5   {b0008, b2464}  0.8648  optimal\n",
+       "6   {b2465, b2935} -0.0000  optimal\n",
+       "7   {b0008, b3919}  0.7040  optimal\n",
+       "8   {b2465, b2464}  0.8739  optimal\n",
+       "9   {b0008, b2935}  0.8739  optimal\n",
+       "10         {b3919}  0.7040  optimal\n",
+       "11         {b2464}  0.8739  optimal\n",
+       "12         {b2935}  0.8739  optimal\n",
+       "13  {b2935, b3919}  0.7040  optimal\n",
+       "14  {b3919, b2464}  0.7040  optimal"
+      ]
      },
+     "execution_count": 7,
      "metadata": {},
-     "execution_count": 8
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -250,28 +681,26 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "By default, the double deletion function will automatically use multiprocessing, splitting the task over up to 4 cores if they are available. The number of cores can be manually specified as well. Setting use of a single core will disable use of the multiprocessing library, which often aids debugging."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 8,
    "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true,
     "tags": []
    },
    "outputs": [
     {
-     "output_type": "stream",
      "name": "stdout",
-     "text": "Double gene deletions for 200 genes completed in 9.02 sec with 2 cores\nDouble gene deletions for 200 genes completed in 15.48 sec with 1 core\nSpeedup of 1.72x\n"
+     "output_type": "stream",
+     "text": [
+      "Double gene deletions for 200 genes completed in 1.29 sec with 2 cores\n",
+      "Double gene deletions for 200 genes completed in 1.74 sec with 1 core\n",
+      "Speedup of 1.35x\n"
+     ]
     }
    ],
    "source": [
@@ -294,31 +723,159 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Double deletions can also be run for reactions."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "execution_count": 9,
+   "metadata": {},
    "outputs": [
     {
-     "output_type": "execute_result",
      "data": {
-      "text/plain": "                 ids  growth   status\n0      {ACt2r, ACKr}  0.8739  optimal\n1     {ACONTa, ACKr}  0.0000  optimal\n2   {ACONTa, ACONTb}  0.0000  optimal\n3           {ACONTa}  0.0000  optimal\n4    {ACONTb, ACt2r}  0.0000  optimal\n5            {ACt2r}  0.8739  optimal\n6     {ACONTa, ADK1}  0.0000  optimal\n7    {ACONTa, ACt2r}  0.0000  optimal\n8      {ADK1, ACt2r}  0.8739  optimal\n9     {ACONTb, ACKr}  0.0000  optimal\n10            {ADK1}  0.8739  optimal\n11    {ACONTb, ADK1}  0.0000  optimal\n12      {ADK1, ACKr}  0.8739  optimal\n13            {ACKr}  0.8739  optimal\n14          {ACONTb}  0.0000  optimal",
-      "text/html": "<div>\n<style scoped>\n    .dataframe tbody tr th:only-of-type {\n        vertical-align: middle;\n    }\n\n    .dataframe tbody tr th {\n        vertical-align: top;\n    }\n\n    .dataframe thead th {\n        text-align: right;\n    }\n</style>\n<table border=\"1\" class=\"dataframe\">\n  <thead>\n    <tr style=\"text-align: right;\">\n      <th></th>\n      <th>ids</th>\n      <th>growth</th>\n      <th>status</th>\n    </tr>\n  </thead>\n  <tbody>\n    <tr>\n      <th>0</th>\n      <td>{ACt2r, ACKr}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>1</th>\n      <td>{ACONTa, ACKr}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>2</th>\n      <td>{ACONTa, ACONTb}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>3</th>\n      <td>{ACONTa}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>4</th>\n      <td>{ACONTb, ACt2r}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>5</th>\n      <td>{ACt2r}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>6</th>\n      <td>{ACONTa, ADK1}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>7</th>\n      <td>{ACONTa, ACt2r}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>8</th>\n      <td>{ADK1, ACt2r}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>9</th>\n      <td>{ACONTb, ACKr}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>10</th>\n      <td>{ADK1}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>11</th>\n      <td>{ACONTb, ADK1}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>12</th>\n      <td>{ADK1, ACKr}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>13</th>\n      <td>{ACKr}</td>\n      <td>0.8739</td>\n      <td>optimal</td>\n    </tr>\n    <tr>\n      <th>14</th>\n      <td>{ACONTb}</td>\n      <td>0.0000</td>\n      <td>optimal</td>\n    </tr>\n  </tbody>\n</table>\n</div>"
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>ids</th>\n",
+       "      <th>growth</th>\n",
+       "      <th>status</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>{ACONTa}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>{ACt2r, ACONTa}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>{ACKr}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>{ACt2r, ACKr}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>{ADK1, ACONTb}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>5</th>\n",
+       "      <td>{ACONTa, ACONTb}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>6</th>\n",
+       "      <td>{ACKr, ACONTa}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>7</th>\n",
+       "      <td>{ACKr, ACONTb}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>8</th>\n",
+       "      <td>{ACt2r, ADK1}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>9</th>\n",
+       "      <td>{ACt2r, ACONTb}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>10</th>\n",
+       "      <td>{ADK1, ACKr}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>11</th>\n",
+       "      <td>{ACONTb}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>12</th>\n",
+       "      <td>{ADK1, ACONTa}</td>\n",
+       "      <td>0.0000</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>13</th>\n",
+       "      <td>{ACt2r}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>14</th>\n",
+       "      <td>{ADK1}</td>\n",
+       "      <td>0.8739</td>\n",
+       "      <td>optimal</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                 ids  growth   status\n",
+       "0           {ACONTa}  0.0000  optimal\n",
+       "1    {ACt2r, ACONTa}  0.0000  optimal\n",
+       "2             {ACKr}  0.8739  optimal\n",
+       "3      {ACt2r, ACKr}  0.8739  optimal\n",
+       "4     {ADK1, ACONTb}  0.0000  optimal\n",
+       "5   {ACONTa, ACONTb}  0.0000  optimal\n",
+       "6     {ACKr, ACONTa}  0.0000  optimal\n",
+       "7     {ACKr, ACONTb}  0.0000  optimal\n",
+       "8      {ACt2r, ADK1}  0.8739  optimal\n",
+       "9    {ACt2r, ACONTb}  0.0000  optimal\n",
+       "10      {ADK1, ACKr}  0.8739  optimal\n",
+       "11          {ACONTb}  0.0000  optimal\n",
+       "12    {ADK1, ACONTa}  0.0000  optimal\n",
+       "13           {ACt2r}  0.8739  optimal\n",
+       "14            {ADK1}  0.8739  optimal"
+      ]
      },
+     "execution_count": 9,
      "metadata": {},
-     "execution_count": 10
+     "output_type": "execute_result"
     }
    ],
    "source": [
@@ -345,9 +902,14 @@
    },
    "outputs": [
     {
-     "output_type": "stream",
      "name": "stdout",
-     "text": "ids    growth   status\n89  {ATPM}  0.916647  optimal\n               ids   growth   status\n2238  {ATPM, TKT1}  0.90584  optimal\n"
+     "output_type": "stream",
+     "text": [
+      "       ids    growth   status\n",
+      "12  {ATPM}  0.916647  optimal\n",
+      "              ids   growth   status\n",
+      "859  {ATPM, TKT1}  0.90584  optimal\n"
+     ]
     }
    ],
    "source": [
@@ -373,9 +935,18 @@
    },
    "outputs": [
     {
-     "output_type": "stream",
      "name": "stdout",
-     "text": "ids    growth   status\n15   {PFK}  0.704037  optimal\n17  {TKT1}  0.864759  optimal\n89  {ATPM}  0.916647  optimal\n               ids    growth   status\n762         {ATPM}  0.916647  optimal\n2238  {ATPM, TKT1}  0.905840  optimal\n2533   {PFK, ATPM}  0.704037  optimal\n"
+     "output_type": "stream",
+     "text": [
+      "       ids    growth   status\n",
+      "12  {ATPM}  0.916647  optimal\n",
+      "44  {TKT1}  0.864759  optimal\n",
+      "71   {PFK}  0.704037  optimal\n",
+      "               ids    growth   status\n",
+      "425    {ATPM, PFK}  0.704037  optimal\n",
+      "859   {ATPM, TKT1}  0.905840  optimal\n",
+      "4125        {ATPM}  0.916647  optimal\n"
+     ]
     }
    ],
    "source": [
@@ -397,9 +968,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.8.5 64-bit",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
-   "name": "python38564bitf0104f1d307f43fe817f807276206b68"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -411,9 +982,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.5-final"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
  "nbformat_minor": 2
-}
\ No newline at end of file
+}
diff --git a/documentation_builder/dfba.ipynb b/documentation_builder/dfba.ipynb
index fd96740d7..03cefd329 100644
--- a/documentation_builder/dfba.ipynb
+++ b/documentation_builder/dfba.ipynb
@@ -42,11 +42,21 @@
    "cell_type": "code",
    "execution_count": 2,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
     "import cobra\n",
-    "from cobra.test import create_test_model\n",
-    "model = create_test_model('textbook')"
+    "from cobra.io import load_model\n",
+    "model = load_model('textbook')"
    ]
   },
   {
@@ -67,7 +77,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -149,7 +159,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "t = 5.804: : 185it [00:16, 11.27it/s]\n"
+      "t = 5.804: : 185it [00:05, 34.89it/s]\n"
      ]
     }
    ],
@@ -218,10 +228,11 @@
        "         5.41206877,  5.02222068,  4.62299297,  4.21779303,  3.81071525,\n",
        "         3.40650104,  3.01042208,  2.6280723 ,  2.26504645,  1.92656158,\n",
        "         1.61703023,  1.33965598,  1.09616507,  0.88670502,  0.70995892,\n",
-       "         0.56344028,  0.44387781,  0.34762375,  0.27100065]])"
+       "         0.56344028,  0.44387781,  0.34762375,  0.27100065]])\n",
+       " y_events: [array([[0.87280538, 0.25178492]])]"
       ]
      },
-     "execution_count": 5,
+     "execution_count": 7,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -254,7 +265,7 @@
     },
     {
      "data": {
-      "image/png": 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\n",
+      "image/png": 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\n",
       "text/plain": [
        "<Figure size 432x288 with 2 Axes>"
       ]
@@ -274,11 +285,18 @@
     "ax.set_ylabel('Biomass', color='b')\n",
     "ax2.set_ylabel('Glucose', color='r')"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -292,7 +310,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.6"
+   "version": "3.7.1"
   },
   "toc": {
    "base_numbering": 1,
diff --git a/documentation_builder/faq.ipynb b/documentation_builder/faq.ipynb
index 39860f600..bad5f1500 100644
--- a/documentation_builder/faq.ipynb
+++ b/documentation_builder/faq.ipynb
@@ -62,14 +62,23 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "from __future__ import print_function\n",
-    "import cobra.test\n",
-    "model = cobra.test.create_test_model()\n",
+    "from cobra.io import load_model\n",
+    "model = load_model(\"iYS1720\")\n",
     "\n",
     "for metabolite in model.metabolites:\n",
-    "    metabolite.id = \"test_\" + metabolite.id\n",
+    "    metabolite.id = f\"test_{metabolite.id}\"\n",
     "\n",
     "try:\n",
     "    model.metabolites.get_by_id(model.metabolites[0].id)\n",
@@ -95,22 +104,25 @@
        "\n",
        "        <table>\n",
        "            <tr>\n",
-       "                <td><strong>Metabolite identifier</strong></td><td>test_dcaACP_c</td>\n",
-       "            </tr>\n",
-       "            <tr>\n",
-       "                <td><strong>Name</strong></td><td>Decanoyl-ACP-n-C100ACP</td>\n",
-       "            </tr>\n",
+       "                <td><strong>Metabolite identifier</strong></td><td>test_10fthf_c</td>\n",
+       "            </tr><tr>\n",
+       "                <td><strong>Name</strong></td><td>10-Formyltetrahydrofolate</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0110f09630</td>\n",
+       "                <td>0x7f9c91ec0a90</td>\n",
        "            </tr><tr>\n",
-       "            <tr>\n",
-       "                <td><strong>Formula</strong></td><td>C21H39N2O8PRS</td>\n",
+       "                <td><strong>Formula</strong></td><td>C20H21N7O7</td>\n",
+       "            </tr><tr>\n",
+       "                <td><strong>Compartment</strong></td><td>c</td>\n",
+       "            </tr><tr>\n",
+       "                <td><strong>In 9 reaction(s)</strong></td><td>\n",
+       "                    FTHFD, ULA4NFT, GARFT, AICART, TDPFRMT, MTHFC, BIOMASS_Ec_iAF1260_core_59p81M, BIOMASS_invivo, FMETTRS\n",
+       "                    </td>\n",
        "            </tr>\n",
        "        </table>"
       ],
       "text/plain": [
-       "<Metabolite test_dcaACP_c at 0x110f09630>"
+       "<Metabolite test_10fthf_c at 0x7f9c91ec0a90>"
       ]
      },
      "execution_count": 2,
@@ -136,7 +148,7 @@
    "source": [
     "That depends on what precisely you mean by delete a gene.\n",
     "\n",
-    "If you want to simulate the model with a gene knockout, use the `cobra.manipulation.knock_out_model_genes` function. The effects of this function are reversed when exiting a context."
+    "If you want to simulate the model with a gene knockout, use the `cobra.manipulation.knock_out_model_genes` function within a context. The effects of this function are reversed when exiting a context."
    ]
   },
   {
@@ -154,10 +166,11 @@
     }
    ],
    "source": [
-    "model = cobra.test.create_test_model()\n",
+    "model = load_model(\"iYS1720\")\n",
     "PGI = model.reactions.get_by_id(\"PGI\")\n",
     "print(\"bounds before knockout:\", (PGI.lower_bound, PGI.upper_bound))\n",
-    "cobra.manipulation.knock_out_model_genes(model, [\"STM4221\"])\n",
+    "from cobra.manipulation import knock_out_model_genes\n",
+    "knock_out_model_genes(model, [\"STM4221\"])\n",
     "print(\"bounds after knockouts\", (PGI.lower_bound, PGI.upper_bound))"
    ]
   },
@@ -199,7 +212,7 @@
     }
    ],
    "source": [
-    "model = cobra.test.create_test_model()\n",
+    "model = load_model(\"iYS1720\")\n",
     "model.reactions.get_by_id(\"PGI\").reversibility"
    ]
   },
@@ -219,7 +232,8 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "cobra/core/reaction.py:501 \u001b[1;31mUserWarning\u001b[0m: Setting reaction reversibility is ignored\n"
+      "/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/core/reaction.py:810: UserWarning: Setting reaction reversibility is ignored\n",
+      "  warn(\"Setting reaction reversibility is ignored\")\n"
      ]
     }
    ],
@@ -276,54 +290,19 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "With optlang solvers, the LP formulation of a model is obtained by it's string representation. All solvers behave the same way."
+    "With optlang solvers, the LP formulation of a model is obtained by its string representation. All solvers behave the same way."
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 7,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "with open('test.lp', 'w') as out:\n",
     "    out.write(str(model.solver))"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "### For cobrapy's internal solvers"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "With the internal solvers, we first create the problem and use functions bundled with the solver. \n",
-    "\n",
-    "Please note that unlike the LP file format, the MPS file format does not specify objective direction and is always a minimization. Some (but not all) solvers will rewrite the maximization as a minimization."
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 8,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "model = cobra.test.create_test_model()\n",
-    "# glpk through cglpk\n",
-    "glpk = cobra.solvers.cglpk.create_problem(model)\n",
-    "glpk.write(\"test.lp\")\n",
-    "glpk.write(\"test.mps\")  # will not rewrite objective\n",
-    "# cplex\n",
-    "cplex = cobra.solvers.cplex_solver.create_problem(model)\n",
-    "cplex.write(\"test.lp\")\n",
-    "cplex.write(\"test.mps\")  # rewrites objective"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -341,7 +320,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -355,7 +334,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.7"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/gapfilling.ipynb b/documentation_builder/gapfilling.ipynb
index a149f00df..9c373bfaa 100644
--- a/documentation_builder/gapfilling.ipynb
+++ b/documentation_builder/gapfilling.ipynb
@@ -35,10 +35,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Where *l*, *u* are lower and upper bounds for reaction *i* and *z* is an indicator variable that is zero if the reaction is not used and otherwise 1, *c* is a user-defined cost associated with using the *i*th reaction, $v^\\star$ is the flux of the objective and *t* a lower bound for that objective. To demonstrate, let's take a model and remove some essential reactions from it."
    ]
@@ -46,24 +43,27 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
-   "outputs": [],
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "import cobra.test\n",
+    "from cobra.io import load_model\n",
     "from cobra.flux_analysis import gapfill\n",
-    "model = cobra.test.create_test_model(\"salmonella\")"
+    "model = load_model(\"iYS1720\")"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "In this model D-Fructose-6-phosphate is an essential metabolite. We will remove all the reactions using it, and at them to a separate model."
    ]
@@ -71,11 +71,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "universal = cobra.Model(\"universal_reactions\")\n",
@@ -87,10 +83,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Now, because of these gaps, the model won't grow."
    ]
@@ -98,11 +91,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -121,10 +110,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "We will use can use the model's original objective, growth, to figure out which of the removed reactions are required for the model be feasible again. This is very similar to making the 'no-growth but growth (NGG)' predictions of [Kumar et al. 2009](http://dx.doi.org/10.1371/journal.pcbi.1000308)."
    ]
@@ -132,21 +118,14 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
       "GF6PTA\n",
-      "F6PP\n",
-      "TKT2\n",
-      "FBP\n",
-      "MAN6PI\n"
+      "TALA\n"
      ]
     }
    ],
@@ -158,10 +137,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "We can obtain multiple possible reaction sets by having the algorithm go through multiple iterations."
    ]
@@ -169,11 +145,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -181,28 +153,17 @@
      "text": [
       "---- Run 1 ----\n",
       "GF6PTA\n",
-      "F6PP\n",
-      "TKT2\n",
-      "FBP\n",
-      "MAN6PI\n",
+      "TALA\n",
       "---- Run 2 ----\n",
       "GF6PTA\n",
       "TALA\n",
-      "PGI\n",
-      "F6PA\n",
-      "MAN6PI\n",
       "---- Run 3 ----\n",
-      "GF6PTA\n",
-      "F6PP\n",
       "TKT2\n",
+      "GF6PTA\n",
       "FBP\n",
-      "MAN6PI\n",
       "---- Run 4 ----\n",
       "GF6PTA\n",
-      "TALA\n",
-      "PGI\n",
-      "F6PA\n",
-      "MAN6PI\n"
+      "TALA\n"
      ]
     }
    ],
@@ -216,10 +177,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "We can also instead of using the original objective, specify a given metabolite that we want the model to be able to produce."
    ]
@@ -227,17 +185,13 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "FBP\n"
+      "F6PA\n"
      ]
     }
    ],
@@ -251,10 +205,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Finally, note that using mixed-integer linear programming is computationally quite expensive and for larger models you may want to consider alternative [gap filling methods](http://opencobra.github.io/cobrapy/tags/gapfilling/) and [reconstruction methods](http://opencobra.github.io/cobrapy/tags/reconstruction/)."
    ]
@@ -262,7 +213,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -276,9 +227,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.0"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 0
+ "nbformat_minor": 1
 }
diff --git a/documentation_builder/getting_started.ipynb b/documentation_builder/getting_started.ipynb
index 863ac5386..9f2be895b 100644
--- a/documentation_builder/getting_started.ipynb
+++ b/documentation_builder/getting_started.ipynb
@@ -25,15 +25,23 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "from __future__ import print_function\n",
-    "\n",
     "import cobra\n",
-    "import cobra.test\n",
+    "from cobra.io import load_model\n",
     "\n",
-    "# \"ecoli\" and \"salmonella\" are also valid arguments\n",
-    "model = cobra.test.create_test_model(\"textbook\")"
+    "# \"iJO1366\" and \"salmonella\" are also valid arguments\n",
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -88,7 +96,7 @@
        "                <td>e_coli_core</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x010cb2d358</td>\n",
+       "                <td>0x07feb1af21f28</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>72</td>\n",
@@ -96,6 +104,9 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>95</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
        "                <td>1.0*Biomass_Ecoli_core - 1.0*Biomass_Ecoli_core_reverse_2cdba</td>\n",
        "            </tr><tr>\n",
@@ -105,7 +116,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model e_coli_core at 0x10cb2d358>"
+       "<Model e_coli_core at 0x7feb1af21f28>"
       ]
      },
      "execution_count": 3,
@@ -140,12 +151,12 @@
        "                <td><strong>Name</strong></td><td>L-Glutamate exchange</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0117a94898</td>\n",
+       "                <td>0x7feb1b012eb8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Stoichiometry</strong></td>\n",
        "                <td>\n",
-       "                    <p style='text-align:right'>glu__L_e --> </p>\n",
-       "                    <p style='text-align:right'>L-Glutamate --> </p>\n",
+       "                    <p style='text-align:right'>glu__L_e --></p>\n",
+       "                    <p style='text-align:right'>L-Glutamate --></p>\n",
        "                </td>\n",
        "            </tr><tr>\n",
        "                <td><strong>GPR</strong></td><td></td>\n",
@@ -158,7 +169,7 @@
        "        "
       ],
       "text/plain": [
-       "<Reaction EX_glu__L_e at 0x117a94898>"
+       "<Reaction EX_glu__L_e at 0x7feb1b012eb8>"
       ]
      },
      "execution_count": 4,
@@ -193,19 +204,20 @@
        "                <td><strong>Name</strong></td><td>ATP</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x01179dae48</td>\n",
+       "                <td>0x7feb1af41550</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Formula</strong></td><td>C10H12N5O13P3</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartment</strong></td><td>c</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>In 13 reaction(s)</strong></td><td>\n",
-       "                    PPCK, ATPS4r, ADK1, ATPM, GLNS, GLNabc, ACKr, PGK, PPS, PYK, SUCOAS, Biomass_Ecoli_core, PFK</td>\n",
+       "                    Biomass_Ecoli_core, ATPS4r, PGK, ACKr, ADK1, GLNS, ATPM, PFK, PPS, GLNabc, PYK, PPCK, SUCOAS\n",
+       "                    </td>\n",
        "            </tr>\n",
        "        </table>"
       ],
       "text/plain": [
-       "<Metabolite atp_c at 0x1179dae48>"
+       "<Metabolite atp_c at 0x7feb1af41550>"
       ]
      },
      "execution_count": 5,
@@ -274,7 +286,7 @@
        "                <td><strong>Name</strong></td><td>glucose-6-phosphate isomerase</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0117afacc0</td>\n",
+       "                <td>0x7feb1b09c2e8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Stoichiometry</strong></td>\n",
        "                <td>\n",
@@ -292,7 +304,7 @@
        "        "
       ],
       "text/plain": [
-       "<Reaction PGI at 0x117afacc0>"
+       "<Reaction PGI at 0x7feb1b09c2e8>"
       ]
      },
      "execution_count": 7,
@@ -367,7 +379,9 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "metadata": {},
+   "metadata": {
+    "scrolled": true
+   },
    "outputs": [
     {
      "name": "stdout",
@@ -392,7 +406,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Bounds can also be modified one-at-a-time using `reaction.lower_bound` or `reaction.upper_bound`. This approach is less desirable than setting both bounds simultaneously with `reaction.bounds` because a user might accidently set a lower bound *higher* than an upper bound (or vice versa). Currently, cobrapy will automatically adjust the other bound (e.g. the bound the user didn't manually adjust) so that this violation doesn't occur, but this feature may be removed in the near future. "
+    "Bounds can also be modified one-at-a-time using `reaction.lower_bound` or `reaction.upper_bound`. This approach is less desirable than setting both bounds simultaneously with `reaction.bounds` because a user might accidently set a lower bound *higher* than an upper bound (or vice versa). If a lower bound is *higher* than upper bound (or vice versa), this will lead to an error."
    ]
   },
   {
@@ -404,8 +418,21 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Upper bound prior to setting new lower bound: 1000.0\n",
-      "Upper bound after setting new lower bound: 1100\n"
+      "Upper bound prior to setting new lower bound: 1000.0\n"
+     ]
+    },
+    {
+     "ename": "ValueError",
+     "evalue": "The lower bound must be less than or equal to the upper bound (1100 <= 1000.0).",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mValueError\u001b[0m                                Traceback (most recent call last)",
+      "\u001b[0;32m/var/folders/v7/99h1ft7s0mzg1_83fmbc8mnm0000gn/T/ipykernel_23255/4168182522.py\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[0mold_bounds\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mpgi\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbounds\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      2\u001b[0m \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Upper bound prior to setting new lower bound:'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mpgi\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupper_bound\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 3\u001b[0;31m \u001b[0mpgi\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mlower_bound\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m1100\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m      4\u001b[0m \u001b[0mprint\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'Upper bound after setting new lower bound:'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mpgi\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupper_bound\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      5\u001b[0m \u001b[0mpgi\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbounds\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mold_bounds\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
+      "\u001b[0;32m~/PycharmProjects/cobrapy/src/cobra/util/context.py\u001b[0m in \u001b[0;36mwrapper\u001b[0;34m(self, new_value)\u001b[0m\n\u001b[1;32m    109\u001b[0m             \u001b[0mcontext\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpartial\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mfunc\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mold_value\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    110\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 111\u001b[0;31m         \u001b[0mfunc\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnew_value\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    112\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    113\u001b[0m     \u001b[0;32mreturn\u001b[0m \u001b[0mwrapper\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
+      "\u001b[0;32m~/PycharmProjects/cobrapy/src/cobra/core/reaction.py\u001b[0m in \u001b[0;36mlower_bound\u001b[0;34m(self, value)\u001b[0m\n\u001b[1;32m    368\u001b[0m         \"\"\"\n\u001b[1;32m    369\u001b[0m         \u001b[0;31m# Validate bounds before setting them.\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 370\u001b[0;31m         \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_check_bounds\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_upper_bound\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    371\u001b[0m         \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_lower_bound\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    372\u001b[0m         \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mupdate_variable_bounds\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
+      "\u001b[0;32m~/PycharmProjects/cobrapy/src/cobra/core/reaction.py\u001b[0m in \u001b[0;36m_check_bounds\u001b[0;34m(lb, ub)\u001b[0m\n\u001b[1;32m    292\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0mlb\u001b[0m \u001b[0;34m>\u001b[0m \u001b[0mub\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    293\u001b[0m             raise ValueError(\n\u001b[0;32m--> 294\u001b[0;31m                 \u001b[0;34mf\"The lower bound must be less than or equal to the upper bound \"\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    295\u001b[0m                 \u001b[0;34mf\"({lb} <= {ub}).\"\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    296\u001b[0m             )\n",
+      "\u001b[0;31mValueError\u001b[0m: The lower bound must be less than or equal to the upper bound (1100 <= 1000.0)."
      ]
     }
    ],
@@ -622,19 +649,20 @@
        "                <td><strong>Name</strong></td><td>ATP</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x01179dae48</td>\n",
+       "                <td>0x7feb1af41550</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Formula</strong></td><td>C10H12N5O13P3</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartment</strong></td><td>c</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>In 13 reaction(s)</strong></td><td>\n",
-       "                    PPCK, ATPS4r, ADK1, ATPM, GLNS, GLNabc, ACKr, PGK, PPS, PYK, SUCOAS, Biomass_Ecoli_core, PFK</td>\n",
+       "                    Biomass_Ecoli_core, ATPS4r, PGK, ACKr, ADK1, GLNS, ATPM, PFK, PPS, GLNabc, PYK, PPCK, SUCOAS\n",
+       "                    </td>\n",
        "            </tr>\n",
        "        </table>"
       ],
       "text/plain": [
-       "<Metabolite atp_c at 0x1179dae48>"
+       "<Metabolite atp_c at 0x7feb1af41550>"
       ]
      },
      "execution_count": 19,
@@ -766,10 +794,10 @@
     {
      "data": {
       "text/plain": [
-       "frozenset({<Reaction Biomass_Ecoli_core at 0x117a71358>,\n",
-       "           <Reaction G6PDH2r at 0x117a575f8>,\n",
-       "           <Reaction GLCpts at 0x117a9d0f0>,\n",
-       "           <Reaction PGI at 0x117afacc0>})"
+       "frozenset({<Reaction Biomass_Ecoli_core at 0x7feb1afd4240>,\n",
+       "           <Reaction G6PDH2r at 0x7feb1b04bf60>,\n",
+       "           <Reaction GLCpts at 0x7feb1b050b38>,\n",
+       "           <Reaction PGI at 0x7feb1b09c2e8>})"
       ]
      },
      "execution_count": 24,
@@ -794,7 +822,7 @@
    "source": [
     "The `gene_reaction_rule` is a boolean representation of the gene requirements for this reaction to be active as described in [Schellenberger et al 2011 Nature Protocols 6(9):1290-307](http://dx.doi.org/doi:10.1038/nprot.2011.308).\n",
     "\n",
-    "The GPR is stored as the gene_reaction_rule for a Reaction object as a string."
+    "The GPR is stored as the GPR class in the gpr for a Reaction. A string representation of it is stored as the gene_reaction_rule for a Reaction object."
    ]
   },
   {
@@ -803,19 +831,19 @@
    "metadata": {},
    "outputs": [
     {
-     "data": {
-      "text/plain": [
-       "'b4025'"
-      ]
-     },
-     "execution_count": 25,
-     "metadata": {},
-     "output_type": "execute_result"
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "b4025\n",
+      "b4025\n"
+     ]
     }
    ],
    "source": [
-    "gpr = pgi.gene_reaction_rule\n",
-    "gpr"
+    "gpr = pgi.gpr\n",
+    "print(gpr)\n",
+    "gpr_string = pgi.gene_reaction_rule\n",
+    "print(gpr_string)"
    ]
   },
   {
@@ -833,7 +861,7 @@
     {
      "data": {
       "text/plain": [
-       "frozenset({<Gene b4025 at 0x1179cec18>})"
+       "frozenset({<Gene b4025 at 0x7feb1afb0f98>})"
       ]
      },
      "execution_count": 26,
@@ -861,17 +889,18 @@
        "                <td><strong>Name</strong></td><td>pgi</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x01179cec18</td>\n",
+       "                <td>0x7feb1afb0f98</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Functional</strong></td><td>True</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>In 1 reaction(s)</strong></td><td>\n",
-       "                    PGI</td>\n",
+       "                    PGI\n",
+       "                    </td>\n",
        "            </tr>\n",
        "        </table>"
       ],
       "text/plain": [
-       "<Gene b4025 at 0x1179cec18>"
+       "<Gene b4025 at 0x7feb1afb0f98>"
       ]
      },
      "execution_count": 27,
@@ -899,7 +928,7 @@
     {
      "data": {
       "text/plain": [
-       "frozenset({<Reaction PGI at 0x117afacc0>})"
+       "frozenset({<Reaction PGI at 0x7feb1b09c2e8>})"
       ]
      },
      "execution_count": 28,
@@ -926,7 +955,7 @@
     {
      "data": {
       "text/plain": [
-       "frozenset({<Gene eggs at 0x11793d6d8>, <Gene spam at 0x11793d748>})"
+       "frozenset({<Gene eggs at 0x7feb1b0b0cc0>, <Gene spam at 0x7feb1b0aacf8>})"
       ]
      },
      "execution_count": 29,
@@ -982,17 +1011,18 @@
        "                <td><strong>Name</strong></td><td></td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x011793d748</td>\n",
+       "                <td>0x7feb1b0aacf8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Functional</strong></td><td>True</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>In 1 reaction(s)</strong></td><td>\n",
-       "                    PGI</td>\n",
+       "                    PGI\n",
+       "                    </td>\n",
        "            </tr>\n",
        "        </table>"
       ],
       "text/plain": [
-       "<Gene spam at 0x11793d748>"
+       "<Gene spam at 0x7feb1b0aacf8>"
       ]
      },
      "execution_count": 31,
@@ -1067,7 +1097,7 @@
     }
    ],
    "source": [
-    "model = cobra.test.create_test_model('textbook')\n",
+    "model = load_model('textbook')\n",
     "for reaction in model.reactions[:5]:\n",
     "    with model as model:\n",
     "        reaction.knock_out()\n",
@@ -1124,9 +1154,9 @@
      "output_type": "stream",
      "text": [
       "original objective:  1.0*Biomass_Ecoli_core - 1.0*Biomass_Ecoli_core_reverse_2cdba\n",
-      "print objective in first context: -1.0*ATPM_reverse_5b752 + 1.0*ATPM\n",
+      "print objective in first context: 1.0*ATPM - 1.0*ATPM_reverse_5b752\n",
       "print objective in second context: 1.0*ACALD - 1.0*ACALD_reverse_fda2b\n",
-      "objective after exiting second context: -1.0*ATPM_reverse_5b752 + 1.0*ATPM\n",
+      "objective after exiting second context: 1.0*ATPM - 1.0*ATPM_reverse_5b752\n",
       "back to original objective: 1.0*Biomass_Ecoli_core - 1.0*Biomass_Ecoli_core_reverse_2cdba\n"
      ]
     }
@@ -1167,11 +1197,18 @@
     "with model as inner:\n",
     "    inner.reactions.PFK.knock_out"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -1185,7 +1222,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/io.ipynb b/documentation_builder/io.ipynb
index c88bb894b..a11f29d50 100644
--- a/documentation_builder/io.ipynb
+++ b/documentation_builder/io.ipynb
@@ -26,23 +26,25 @@
      "output_type": "stream",
      "text": [
       "mini test files: \n",
-      "mini.json, mini.mat, mini.pickle, mini.yml, mini_cobra.xml, mini_fbc1.xml, mini_fbc2.xml, mini_fbc2.xml.bz2, mini_fbc2.xml.gz\n"
+      "/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini_fbc2.xml, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini.json, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini_fbc1.xml, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini_fbc2.xml.gz, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini.yml, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini_cobra.xml, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini.mat, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini_fbc2.xml.bz2, /Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/data/mini.pickle\n"
      ]
     }
    ],
    "source": [
-    "import cobra.test\n",
-    "import os\n",
-    "from os.path import join\n",
+    "from pathlib import Path\n",
+    "from cobra.io import load_json_model_model, save_json_model, load_matlab_model, save_matlab_model, read_sbml_model, write_sbml_model\n",
+    "import logging\n",
     "\n",
-    "data_dir = cobra.test.data_dir\n",
+    "data_dir = Path(\".\") / \"..\" / \"src\" / \"cobra\" / \"data\"\n",
+    "data_dir = data_dir.resolve()\n",
     "\n",
     "print(\"mini test files: \")\n",
-    "print(\", \".join(i for i in os.listdir(data_dir) if i.startswith(\"mini\")))\n",
+    "print(\", \".join(str(i) for i in data_dir.glob('mini*.*')))\n",
     "\n",
-    "textbook_model = cobra.test.create_test_model(\"textbook\")\n",
-    "ecoli_model = cobra.test.create_test_model(\"ecoli\")\n",
-    "salmonella_model = cobra.test.create_test_model(\"salmonella\")"
+    "textbook_model = load_model(\"textbook\")\n",
+    "ecoli_model = load_model(\"iJO1366\")\n",
+    "logging.getLogger(\"cobra.io.sbml\").setLevel(logging.ERROR) # salmonella leads to lots of warnings without this line\n",
+    "salmonella_model = load_model(\"salmonella\")"
    ]
   },
   {
@@ -76,7 +78,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x01074fd080</td>\n",
+       "                <td>0x07fbe29d69cf8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -84,8 +86,11 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
        "                <td>cytosol, extracellular</td>\n",
@@ -93,7 +98,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x1074fd080>"
+       "<Model mini_textbook at 0x7fbe29d69cf8>"
       ]
      },
      "execution_count": 2,
@@ -102,18 +107,17 @@
     }
    ],
    "source": [
-    "cobra.io.read_sbml_model(join(data_dir, \"mini_fbc2.xml\"))"
+    "mini_fbc2_path = data_dir / \"mini_fbc2.xml\" \n",
+    "read_sbml_model(str(mini_fbc2_path.resolve()))"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "cobra.io.write_sbml_model(textbook_model, \"test_fbc2.xml\")"
+    "write_sbml_model(textbook_model, \"test_fbc2.xml\")"
    ]
   },
   {
@@ -142,7 +146,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0112fa6b38</td>\n",
+       "                <td>0x07fbe29d693c8</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -150,8 +154,11 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
        "                <td>cytosol, extracellular</td>\n",
@@ -159,7 +166,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x112fa6b38>"
+       "<Model mini_textbook at 0x7fbe29d693c8>"
       ]
      },
      "execution_count": 4,
@@ -168,19 +175,17 @@
     }
    ],
    "source": [
-    "cobra.io.read_sbml_model(join(data_dir, \"mini_cobra.xml\"))"
+    "mini_cobra_path = data_dir / \"mini_cobra.xml\" \n",
+    "read_sbml_model(str(mini_cobra_path.resolve()))"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 5,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "cobra.io.write_sbml_model(\n",
-    "    textbook_model, \"test_cobra.xml\", use_fbc_package=False)"
+    "write_sbml_model(textbook_model, \"test_cobra.xml\")"
    ]
   },
   {
@@ -212,7 +217,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0113061080</td>\n",
+       "                <td>0x07fbe29c6ac50</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -220,8 +225,11 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
        "                <td>cytosol, extracellular</td>\n",
@@ -229,7 +237,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x113061080>"
+       "<Model mini_textbook at 0x7fbe29c6ac50>"
       ]
      },
      "execution_count": 6,
@@ -238,18 +246,17 @@
     }
    ],
    "source": [
-    "cobra.io.load_json_model(join(data_dir, \"mini.json\"))"
+    "mini_json_path = data_dir / \"mini.json\" \n",
+    "load_json_model(str(mini_json_path.resolve()))"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 7,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "cobra.io.save_json_model(textbook_model, \"test.json\")"
+    "save_json_model(textbook_model, \"test.json\")"
    ]
   },
   {
@@ -281,7 +288,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0113013390</td>\n",
+       "                <td>0x07fbe29c6ad30</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -289,16 +296,19 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
-       "                <td>extracellular, cytosol</td>\n",
+       "                <td>cytosol, extracellular</td>\n",
        "            </tr>\n",
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x113013390>"
+       "<Model mini_textbook at 0x7fbe29c6ad30>"
       ]
      },
      "execution_count": 8,
@@ -307,18 +317,17 @@
     }
    ],
    "source": [
-    "cobra.io.load_yaml_model(join(data_dir, \"mini.yml\"))"
+    "mini_yml_path = data_dir / \"mini.yml\"\n",
+    "load_yaml_model(str(mini_yml_path.resolve()))"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 9,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "cobra.io.save_yaml_model(textbook_model, \"test.yml\")"
+    "save_yaml_model(textbook_model, \"test.yml\")"
    ]
   },
   {
@@ -352,7 +361,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0113000b70</td>\n",
+       "                <td>0x07fbe29c5dd30</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -360,8 +369,11 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
        "                <td>c, e</td>\n",
@@ -369,7 +381,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x113000b70>"
+       "<Model mini_textbook at 0x7fbe29c5dd30>"
       ]
      },
      "execution_count": 10,
@@ -378,8 +390,11 @@
     }
    ],
    "source": [
-    "cobra.io.load_matlab_model(\n",
-    "    join(data_dir, \"mini.mat\"), variable_name=\"mini_textbook\")"
+    "mini_mat_path = data_dir / \"mini.mat\"\n",
+    "load_matlab_model(\n",
+    "    str(mini_mat_path.resolve()),\n",
+    "    variable_name=\"mini_textbook\",\n",
+    ")"
    ]
   },
   {
@@ -404,7 +419,7 @@
        "                <td>mini_textbook</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Memory address</strong></td>\n",
-       "                <td>0x0113758438</td>\n",
+       "                <td>0x07fbe299af940</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Number of metabolites</strong></td>\n",
        "                <td>23</td>\n",
@@ -412,8 +427,11 @@
        "                <td><strong>Number of reactions</strong></td>\n",
        "                <td>18</td>\n",
        "            </tr><tr>\n",
+       "                <td><strong>Number of groups</strong></td>\n",
+       "                <td>0</td>\n",
+       "            </tr><tr>\n",
        "                <td><strong>Objective expression</strong></td>\n",
-       "                <td>-1.0*ATPM_reverse_5b752 - 1.0*PFK_reverse_d24a6 + 1.0*PFK + 1.0*ATPM</td>\n",
+       "                <td>1.0*ATPM - 1.0*ATPM_reverse_5b752 + 1.0*PFK - 1.0*PFK_reverse_d24a6</td>\n",
        "            </tr><tr>\n",
        "                <td><strong>Compartments</strong></td>\n",
        "                <td>c, e</td>\n",
@@ -421,7 +439,7 @@
        "          </table>"
       ],
       "text/plain": [
-       "<Model mini_textbook at 0x113758438>"
+       "<Model mini_textbook at 0x7fbe299af940>"
       ]
      },
      "execution_count": 11,
@@ -430,7 +448,8 @@
     }
    ],
    "source": [
-    "cobra.io.load_matlab_model(join(data_dir, \"mini.mat\"))"
+    "mini_mat_path = data_dir / \"mini.mat\"\n",
+    "load_matlab_model(str(mini_mat_path.resolve()))"
    ]
   },
   {
@@ -443,12 +462,10 @@
   {
    "cell_type": "code",
    "execution_count": 12,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "cobra.io.save_matlab_model(textbook_model, \"test.mat\")"
+    "save_matlab_model(textbook_model, \"test.mat\")"
    ]
   },
   {
@@ -470,7 +487,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -484,7 +501,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.0"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/loopless.ipynb b/documentation_builder/loopless.ipynb
index 68ae44c44..98af41600 100644
--- a/documentation_builder/loopless.ipynb
+++ b/documentation_builder/loopless.ipynb
@@ -2,20 +2,14 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "# Loopless FBA"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "The goal of this procedure is identification of a thermodynamically consistent flux state without loops, as implied by the name. You can find a more detailed description in the [method](#Method) section at the end of the notebook."
    ]
@@ -23,17 +17,13 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "%matplotlib inline\n",
     "import plot_helper\n",
     "\n",
-    "import cobra.test\n",
+    "from cobra.io import load_model\n",
     "from cobra import Reaction, Metabolite, Model\n",
     "from cobra.flux_analysis.loopless import add_loopless, loopless_solution\n",
     "from cobra.flux_analysis import pfba"
@@ -41,20 +31,14 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Loopless solution"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Classical loopless approaches as described below are computationally expensive to solve due to the added mixed-integer constraints. A much faster, and pragmatic approach is instead to post-process flux distributions to simply set fluxes to zero wherever they can be zero without changing the fluxes of any exchange reactions in the model. [CycleFreeFlux](http://dx.doi.org/10.1093/bioinformatics/btv096) is an algorithm that can be used to achieve this and in cobrapy it is implemented in the `cobra.flux_analysis.loopless_solution` function. `loopless_solution` will identify the closest flux distribution (using only loopless elementary flux modes) to the original one. Note that this will not remove loops which you explicitly requested, for instance by forcing a loop reaction to carry non-zero flux. \n",
     "\n",
@@ -64,14 +48,12973 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
-   "outputs": [],
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Model does not contain SBML fbc package information.\n",
+      "SBML package 'layout' not supported by cobrapy, information is not parsed\n",
+      "SBML package 'render' not supported by cobrapy, information is not parsed\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcaACP_c \"Decanoyl-ACP-n-C100ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcaACP_c \"Decanoyl-ACP-n-C100ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2aobut_c \"L-2-Amino-3-oxobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2aobut_c \"L-2-Amino-3-oxobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2pglyc_c \"2-Phosphoglycolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2pglyc_c \"2-Phosphoglycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eig3p_c \"D-erythro-1-Imidazol-4-yl-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eig3p_c \"D-erythro-1-Imidazol-4-yl-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ahbut_c \"S-2-Aceto-2-hydroxybutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ahbut_c \"S-2-Aceto-2-hydroxybutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam_p \"ferroxamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam_p \"ferroxamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pyr_c \"Pyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pyr_c \"Pyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pyr_e \"Pyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pyr_e \"Pyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pyr_p \"Pyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pyr_p \"Pyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tdecoa_c \"Tetradecenoyl-CoA-n-C141CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tdecoa_c \"Tetradecenoyl-CoA-n-C141CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg161_c \"acyl-phosphatidylglycerol-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg161_c \"acyl-phosphatidylglycerol-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__L_p \"L-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__L_p \"L-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xtsn_e \"Xanthosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xtsn_e \"Xanthosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__L_e \"L-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__L_e \"L-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__L_c \"L-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__L_c \"L-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octa_c \"octanoate-n-C80\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octa_c \"octanoate-n-C80\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__L_e \"L-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__L_e \"L-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hmrsACP_c \"R-3-Hydroxytetradecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hmrsACP_c \"R-3-Hydroxytetradecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__L_c \"L-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__L_c \"L-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octa_p \"octanoate-n-C80\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octa_p \"octanoate-n-C80\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__L_p \"L-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__L_p \"L-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__B_p \"beta-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__B_p \"beta-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__B_e \"beta-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__B_e \"beta-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pnto__R_e \"R-Pantothenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pnto__R_e \"R-Pantothenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__B_c \"beta-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__B_c \"beta-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_8aonn_c \"8-Amino-7-oxononanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_8aonn_c \"8-Amino-7-oxononanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmso_e \"Dimethyl-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmso_e \"Dimethyl-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pnto__R_c \"R-Pantothenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pnto__R_c \"R-Pantothenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe180_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe180_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5dglcn_e \"5-Dehydro-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5dglcn_e \"5-Dehydro-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmso_p \"Dimethyl-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmso_p \"Dimethyl-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps141_c \"phosphatidylserine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps141_c \"phosphatidylserine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbt6p_c \"Arbutin-6-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbt6p_c \"Arbutin-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe180_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe180_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uamag_c \"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uamag_c \"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pmcoa_c \"Pimeloyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pmcoa_c \"Pimeloyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_atp_c \"ATP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_atp_c \"ATP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ump_e \"UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ump_e \"UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm_e \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm_e \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ump_p \"UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ump_p \"UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_coa_c \"Coenzyme-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_coa_c \"Coenzyme-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDglu_c \"L-alanine-D-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDglu_c \"L-alanine-D-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_din_p \"Deoxyinosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_din_p \"Deoxyinosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hbcoa_c \"S-3-Hydroxybutanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hbcoa_c \"S-3-Hydroxybutanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dutp_c \"dUTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dutp_c \"dUTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_din_c \"Deoxyinosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_din_c \"Deoxyinosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crnDcoa_c \"D-carnitinyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crnDcoa_c \"D-carnitinyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_din_e \"Deoxyinosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_din_e \"Deoxyinosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur1p_e \"D-Glucuronate-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur1p_e \"D-Glucuronate-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ohph_c \"2-Octaprenyl-6-hydroxyphenol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ohph_c \"2-Octaprenyl-6-hydroxyphenol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gtp_p \"GTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gtp_p \"GTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amob_c \"S-Adenosyl-4-methylthio-2-oxobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amob_c \"S-Adenosyl-4-methylthio-2-oxobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp3Oag_p \"Undecaprenyl-diphosphate-O-antigene-3x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp3Oag_p \"Undecaprenyl-diphosphate-O-antigene-3x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gtp_e \"GTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gtp_e \"GTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gtp_c \"GTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gtp_c \"GTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cyst__L_c \"L-Cystathionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cyst__L_c \"L-Cystathionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adn_p \"Adenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adn_p \"Adenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3mop_c \"S-3-Methyl-2-oxopentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3mop_c \"S-3-Methyl-2-oxopentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbl1_p \"Cob-I-alamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbl1_p \"Cob-I-alamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_valtrna_c \"L-Valyl-tRNA-Val\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_valtrna_c \"L-Valyl-tRNA-Val\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no2_p \"Nitrite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no2_p \"Nitrite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs3_p \"fe3dhbzs3_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbl1_c \"Cob-I-alamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbl1_c \"Cob-I-alamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbl1_e \"Cob-I-alamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbl1_e \"Cob-I-alamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no2_e \"Nitrite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no2_e \"Nitrite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs3_e \"fe3dhbzs3_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs3_c \"fe3dhbzs3_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no2_c \"Nitrite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no2_c \"Nitrite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2mecdp_c \"2-C-methyl-D-erythritol-2-4-cyclodiphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2mecdp_c \"2-C-methyl-D-erythritol-2-4-cyclodiphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ncam_c \"Nicotinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ncam_c \"Nicotinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa_p \"KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa_p \"KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ombzl_c \"2-Octaprenyl-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ombzl_c \"2-Octaprenyl-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa_e \"KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa_e \"KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ascb6p_c \"L-ascorbate-6-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ascb6p_c \"L-ascorbate-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa_c \"KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa_c \"KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbp_c \"Carbamoyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbp_c \"Carbamoyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn_e \"aerobactin-minus-Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn_e \"aerobactin-minus-Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asn__L_c \"L-Asparagine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asn__L_c \"L-Asparagine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asn__L_e \"L-Asparagine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asn__L_e \"L-Asparagine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alaala_p \"D-Alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alaala_p \"D-Alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn_c \"aerobactin-minus-Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn_c \"aerobactin-minus-Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alaala_e \"D-Alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alaala_e \"D-Alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asn__L_p \"L-Asparagine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asn__L_p \"L-Asparagine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2omph_c \"2-Octaprenyl-6-methoxyphenol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2omph_c \"2-Octaprenyl-6-methoxyphenol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn_p \"aerobactin-minus-Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn_p \"aerobactin-minus-Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alaala_c \"D-Alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alaala_c \"D-Alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o2_p \"Hydrogen-peroxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o2_p \"Hydrogen-peroxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5aizc_c \"5-amino-1-5-phospho-D-ribosyl-imidazole-4-carboxylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5aizc_c \"5-amino-1-5-phospho-D-ribosyl-imidazole-4-carboxylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl7_c \"Cobalt-precorrin-7\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl7_c \"Cobalt-precorrin-7\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o2_c \"Hydrogen-peroxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o2_c \"Hydrogen-peroxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nflgln_c \"N-Formimino-L-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nflgln_c \"N-Formimino-L-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o2_e \"Hydrogen-peroxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o2_e \"Hydrogen-peroxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hddecACP_c \"R-3-Hydroxydodecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hddecACP_c \"R-3-Hydroxydodecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhba_c \"2-3-Dihydroxybenzoyl-adenylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhba_c \"2-3-Dihydroxybenzoyl-adenylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octa_e \"octanoate-n-C80\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octa_e \"octanoate-n-C80\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acglu_c \"N-Acetyl-L-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acglu_c \"N-Acetyl-L-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdca_p \"tetradecanoate-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdca_p \"tetradecanoate-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl3_c \"Cobalt-precorrin-3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl3_c \"Cobalt-precorrin-3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cddec5eACP_c \"cis-dodec-5-enoyl-acyl-carrier-protein-n-C121\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cddec5eACP_c \"cis-dodec-5-enoyl-acyl-carrier-protein-n-C121\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdca_e \"tetradecanoate-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdca_e \"tetradecanoate-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdca_c \"tetradecanoate-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdca_c \"tetradecanoate-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ura_c \"Uracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ura_c \"Uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc_e \"Glycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc_e \"Glycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc_c \"Glycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc_c \"Glycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ura_e \"Uracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ura_e \"Uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmum_p \"N-Acetylmuramate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmum_p \"N-Acetylmuramate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_au_c \"Gold-Au\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ura_p \"Uracil\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ura_p \"Uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4p_c \"KDO-2-lipid-IV-A-with-palmitoleoyl\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4p_c \"KDO-2-lipid-IV-A-with-palmitoleoyl\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc_p \"Glycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc_p \"Glycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chit6p_c \"chit6p_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tre_p \"Trehalose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tre_p \"Trehalose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tre_c \"Trehalose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tre_c \"Trehalose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpglc_c \"CDP-glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpglc_c \"CDP-glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tre_e \"Trehalose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tre_e \"Trehalose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps2_ST_p \"ps2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__L_p \"L-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__L_p \"L-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ac_p \"Acetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ac_p \"Acetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__L_c \"L-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__L_c \"L-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__L_e \"L-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__L_e \"L-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4ahmmp_c \"4-Amino-5-hydroxymethyl-2-methylpyrimidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4ahmmp_c \"4-Amino-5-hydroxymethyl-2-methylpyrimidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhmb_c \"R-2-3-Dihydroxy-3-methylbutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhmb_c \"R-2-3-Dihydroxy-3-methylbutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ac_c \"Acetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ac_c \"Acetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ac_e \"Acetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ac_e \"Acetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2odecg3p_c \"2-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2odecg3p_c \"2-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcynt_p \"Thiocyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcynt_p \"Thiocyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dmmql8_c \"2-Demethylmenaquinol-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dmmql8_c \"2-Demethylmenaquinol-8\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sbzcoa_c \"O-Succinylbenzoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sbzcoa_c \"O-Succinylbenzoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcynt_e \"Thiocyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcynt_e \"Thiocyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcynt_c \"Thiocyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcynt_c \"Thiocyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbi_p \"Cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbi_p \"Cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm3p_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm3p_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acald_c \"Acetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acald_c \"Acetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa_p \"core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa_p \"core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr141_c \"1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr141_c \"1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acald_e \"Acetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acald_e \"Acetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbi_c \"Cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbi_c \"Cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbi_e \"Cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbi_e \"Cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa_c \"core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa_c \"core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acald_p \"Acetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acald_p \"Acetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa_e \"core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa_e \"core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr141_p \"1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr141_p \"1-2-Diacyl-sn-glycerol-ditetradec-7-enoyl-n-C141\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xmp_c \"Xanthosine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xmp_c \"Xanthosine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xmp_e \"Xanthosine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xmp_e \"Xanthosine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mg2_p \"magnesium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mg2_p \"magnesium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xmp_p \"Xanthosine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xmp_p \"Xanthosine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmalt_c \"Acetyl-maltose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmalt_c \"Acetyl-maltose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhpmp_c \"Dihydroneopterin-monophosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhpmp_c \"Dihydroneopterin-monophosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mg2_e \"magnesium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mg2_e \"magnesium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mg2_c \"magnesium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mg2_c \"magnesium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3dhq_c \"3-Dehydroquinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3dhq_c \"3-Dehydroquinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhptd_c \"4-5-dihydroxy-2-3-pentanedione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhptd_c \"4-5-dihydroxy-2-3-pentanedione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uLa4n_p \"undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uLa4n_p \"undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_minohp_p \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_minohp_p \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nh4_p \"Ammonium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nh4_p \"Ammonium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ins_e \"Inosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ins_e \"Inosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uLa4n_c \"undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uLa4n_c \"undecaprenyl-phosphate-4-amino-4-deoxy-L-arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nh4_e \"Ammonium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nh4_e \"Ammonium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nh4_c \"Ammonium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nh4_c \"Ammonium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_minohp_e \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_minohp_e \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5mdru1p_c \"5-Methylthio-5-deoxy-D-ribulose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5mdru1p_c \"5-Methylthio-5-deoxy-D-ribulose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2_e \"salchs2_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2_c \"salchs2_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dr5p_c \"2-Deoxy-D-ribose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dr5p_c \"2-Deoxy-D-ribose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2_p \"salchs2_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe160_p \"phosphatidylethanolamine-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe160_p \"phosphatidylethanolamine-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5p5p_p \"two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5p5p_p \"two-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe160_c \"phosphatidylethanolamine-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe160_c \"phosphatidylethanolamine-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdp_e \"GDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdp_e \"GDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdp_c \"GDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdp_c \"GDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tre6p_c \"alpha-alpha-Trehalose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tre6p_c \"alpha-alpha-Trehalose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5aop_c \"5-Amino-4-oxopentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5aop_c \"5-Amino-4-oxopentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdp_p \"GDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdp_p \"GDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5mta_c \"5-Methylthioadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5mta_c \"5-Methylthioadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1tdecg3p_c \"1-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1tdecg3p_c \"1-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5dglcn_c \"5-Dehydro-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5dglcn_c \"5-Dehydro-D-gluconate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3c3hmp_c \"3-Carboxy-3-hydroxy-4-methylpentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3c3hmp_c \"3-Carboxy-3-hydroxy-4-methylpentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddcacoa_c \"Dodecanoyl-CoA-n-C120CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddcacoa_c \"Dodecanoyl-CoA-n-C120CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__S_e \"S-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__S_e \"S-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__S_c \"S-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__S_c \"S-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1tdecg3p_p \"1-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1tdecg3p_p \"1-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hmfurn_c \"4-hydroxy-5-methyl-3-2H-furanone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hmfurn_c \"4-hydroxy-5-methyl-3-2H-furanone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__S_p \"S-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__S_p \"S-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp12Oag_p \"Undecaprenyl-diphosphate-O-antigene-12x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp12Oag_p \"Undecaprenyl-diphosphate-O-antigene-12x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5p4p_p \"two-linked-disacharide-pentapeptide-and-tetrapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5p4p_p \"two-linked-disacharide-pentapeptide-and-tetrapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaarg_c \"tRNA-Arg\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaarg_c \"tRNA-Arg\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4pasp_c \"4-Phospho-L-aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4pasp_c \"4-Phospho-L-aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdapDala_c \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdapDala_c \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdapDala_e \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdapDala_e \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_csn_p \"Cytosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_csn_p \"Cytosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5dglcn_p \"5-Dehydro-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5dglcn_p \"5-Dehydro-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp15Oag_p \"Undecaprenyl-diphosphate-O-antigene-15x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp15Oag_p \"Undecaprenyl-diphosphate-O-antigene-15x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam1p_c \"D-Glucosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam1p_c \"D-Glucosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_csn_c \"Cytosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_csn_c \"Cytosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_csn_e \"Cytosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_csn_e \"Cytosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal1p_p \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal1p_p \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtbt_c \"Dethiobiotin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtbt_c \"Dethiobiotin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3mob_c \"3-Methyl-2-oxobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3mob_c \"3-Methyl-2-oxobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal1p_e \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal1p_e \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_25drapp_c \"2-5-Diamino-6-ribosylamino-4-3H-pyrimidinone-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_25drapp_c \"2-5-Diamino-6-ribosylamino-4-3H-pyrimidinone-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal1p_c \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal1p_c \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ump_c \"UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ump_c \"UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg160_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg160_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xdp_c \"XDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xdp_c \"XDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnagly_c \"tRNA-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnagly_c \"tRNA-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xan_e \"Xanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xan_e \"Xanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4h2kpi_c \"4-Hydroxy-2-ketopimelate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4h2kpi_c \"4-Hydroxy-2-ketopimelate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xan_c \"Xanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xan_c \"Xanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pheme_p \"Protoheme\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pheme_p \"Protoheme\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchsx_p \"Salmochelin-SX\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchsx_p \"Salmochelin-SX\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_6hmhpt_c \"6-hydroxymethyl-dihydropterin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_6hmhpt_c \"6-hydroxymethyl-dihydropterin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xan_p \"Xanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xan_p \"Xanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmum6p_c \"N-acetylmuramate-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmum6p_c \"N-acetylmuramate-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_iasp_c \"Iminoaspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_iasp_c \"Iminoaspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_didp_c \"dIDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_didp_c \"dIDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg161_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg161_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxan_e \"Hypoxanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxan_e \"Hypoxanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxan_c \"Hypoxanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxan_c \"Hypoxanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4_p \"Salmochelin-S4\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4_p \"Salmochelin-S4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg161_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg161_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxan_p \"Hypoxanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxan_p \"Hypoxanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppa_p \"Propionate-n-C30\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppa_p \"Propionate-n-C30\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_spmd_c \"Spermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_spmd_c \"Spermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_spmd_e \"Spermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_spmd_e \"Spermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein3px3p_p \"two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein3px3p_p \"two-disacharide-linked-murein-units-tripeptide-crosslinked-tripeptide-A2pm-A2pm--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_spmd_p \"Spermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_spmd_p \"Spermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppa_c \"Propionate-n-C30\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppa_c \"Propionate-n-C30\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppa_e \"Propionate-n-C30\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppa_e \"Propionate-n-C30\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbgrd_p \"periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbgrd_p \"periplasmic-disulfide-isomerasethiol-disulphide-oxidase-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hexACP_c \"Hexanoyl-ACP-n-C60ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hexACP_c \"Hexanoyl-ACP-n-C60ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcmp_c \"dCMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcmp_c \"dCMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal__bD_e \"beta-D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal__bD_e \"beta-D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcmp_e \"dCMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcmp_e \"dCMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg120_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg120_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcmp_p \"dCMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcmp_p \"dCMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg120_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg120_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fuc__L_c \"L-Fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fuc__L_c \"L-Fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fuc__L_e \"L-Fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fuc__L_e \"L-Fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ocpalm9eACP_c \"3-oxo-cis-palm-9-eoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ocpalm9eACP_c \"3-oxo-cis-palm-9-eoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppi_c \"Diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppi_c \"Diphosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oxam_c \"Oxamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oxam_c \"Oxamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malACP_c \"Malonyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malACP_c \"Malonyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fuc__L_p \"L-Fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fuc__L_p \"L-Fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uaagmda_c \"Undecaprenyl-diphospho-N-acetylmuramoyl-N-acetylglucosamine-L-ala-D-glu-meso-2-6-diaminopimeloyl-D-ala-D-ala\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uaagmda_c \"Undecaprenyl-diphospho-N-acetylmuramoyl-N-acetylglucosamine-L-ala-D-glu-meso-2-6-diaminopimeloyl-D-ala-D-ala\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5apru_c \"5-Amino-6-5-phosphoribosylamino-uracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5apru_c \"5-Amino-6-5-phosphoribosylamino-uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gua_p \"Guanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gua_p \"Guanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fprica_c \"5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fprica_c \"5-Formamido-1-5-phospho-D-ribosyl-imidazole-4-carboxamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu5sa_c \"L-Glutamate-5-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu5sa_c \"L-Glutamate-5-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mmet_p \"S-Methyl-L-methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mmet_p \"S-Methyl-L-methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal_c \"D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal_c \"D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal_e \"D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal_e \"D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mmet_e \"S-Methyl-L-methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mmet_e \"S-Methyl-L-methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal_p \"D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal_p \"D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gar_c \"N1-5-Phospho-D-ribosyl-glycinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gar_c \"N1-5-Phospho-D-ribosyl-glycinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur1p_p \"D-Glucuronate-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur1p_p \"D-Glucuronate-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4fe_e \"Salmochelin-S4-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4fe_e \"Salmochelin-S4-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cytd_p \"Cytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cytd_p \"Cytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4fe_c \"Salmochelin-S4-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4fe_c \"Salmochelin-S4-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cytd_c \"Cytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cytd_c \"Cytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpp_p \"Undecaprenyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcpp_p \"Undecaprenyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4fe_p \"Salmochelin-S4-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4fe_p \"Salmochelin-S4-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cytd_e \"Cytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cytd_e \"Cytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2tpr3dpcoa_c \"2--5--triphosphoribosyl-3-dephospho-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2tpr3dpcoa_c \"2--5--triphosphoribosyl-3-dephospho-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg180_c \"Phosphatidylglycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg180_c \"Phosphatidylglycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn120_p \"cardiolipin-tetradodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn120_p \"cardiolipin-tetradodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxEfe_p \"Ferrioxamine-E-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxEfe_p \"Ferrioxamine-E-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gua_c \"Guanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gua_c \"Guanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbaox_p \"periplasmic-protein-disulfide-isomerase-I-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbaox_p \"periplasmic-protein-disulfide-isomerase-I-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxEfe_c \"Ferrioxamine-E-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxEfe_c \"Ferrioxamine-E-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gua_e \"Guanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gua_e \"Guanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxEfe_e \"Ferrioxamine-E-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxEfe_e \"Ferrioxamine-E-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca4colipa_e \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca4colipa_e \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdp4d6dg_c \"dTDP-4-dehydro-6-deoxy-D-glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdp4d6dg_c \"dTDP-4-dehydro-6-deoxy-D-glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_halipa_e \"hepta-acylated-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_halipa_e \"hepta-acylated-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpabeq_c \"CDP-abequose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpabeq_c \"CDP-abequose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_psd5p_c \"psd5p_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca4colipa_p \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca4colipa_p \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn__un_c \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn__un_c \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn__un_e \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn__un_e \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trdox_c \"Oxidized-thioredoxin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trdox_c \"Oxidized-thioredoxin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn__un_p \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn__un_p \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa140_c \"1-2-ditetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa140_c \"1-2-ditetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1hdecg3p_p \"1-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1hdecg3p_p \"1-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adpglc_c \"ADPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adpglc_c \"ADPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acg5sa_c \"N-Acetyl-L-glutamate-5-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acg5sa_c \"N-Acetyl-L-glutamate-5-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa140_p \"1-2-ditetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa140_p \"1-2-ditetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2me4p_c \"2-C-methyl-D-erythritol-4-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2me4p_c \"2-C-methyl-D-erythritol-4-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malt6p_c \"Maltose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malt6p_c \"Maltose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthrd_c \"Reduced-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthrd_c \"Reduced-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein4p4p_p \"two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein4p4p_p \"two-linked-disacharide-tetrapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn__fe3_p \"Aerobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn__fe3_p \"Aerobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5prdmbz_c \"N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5prdmbz_c \"N1-5-Phospho-alpha-D-ribosyl-5-6-dimethylbenzimidazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_skm_e \"Shikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_skm_e \"Shikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adn_c \"Adenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adn_c \"Adenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn__fe3_c \"Aerobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn__fe3_c \"Aerobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn__fe3_e \"Aerobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn__fe3_e \"Aerobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enter_c \"Enterochelin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enter_c \"Enterochelin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_entermg_c \"entermg_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pnto__R_p \"R-Pantothenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pnto__R_p \"R-Pantothenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxE_p \"Ferrioxamine-E\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxE_p \"Ferrioxamine-E\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h_p \"H\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h_p \"H\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppt_e \"Phosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppt_e \"Phosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_15dap_p \"1-5-Diaminopentane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_15dap_p \"1-5-Diaminopentane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lcts_e \"Lactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lcts_e \"Lactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h_e \"H\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h_e \"H\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h_c \"H\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h_c \"H\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_15dap_c \"1-5-Diaminopentane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_15dap_c \"1-5-Diaminopentane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2amsa_c \"2-Aminomalonate-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2amsa_c \"2-Aminomalonate-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4_e \"Salmochelin-S4\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4_e \"Salmochelin-S4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lcts_p \"Lactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lcts_p \"Lactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppt_p \"Phosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppt_p \"Phosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_15dap_e \"1-5-Diaminopentane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_15dap_e \"1-5-Diaminopentane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dcit_e \"Fe-III-dicitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dcit_e \"Fe-III-dicitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malcoa_c \"Malonyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malcoa_c \"Malonyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fldrd_c \"flavodoxin-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fldrd_c \"flavodoxin-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ins_c \"2ins_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthox_p \"Oxidized-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthox_p \"Oxidized-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdp4d6dm_c \"dTDP-4-dehydro-6-deoxy-L-mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdp4d6dm_c \"dTDP-4-dehydro-6-deoxy-L-mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adp_c \"ADP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adp_c \"ADP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthox_e \"Oxidized-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthox_e \"Oxidized-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ugmd_c \"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ugmd_c \"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_zn2_e \"Zinc\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_zn2_e \"Zinc\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__D_c \"D-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__D_c \"D-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__D_e \"D-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__D_e \"D-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo5_e \"udcpo5_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe141_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe141_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pheme_e \"Protoheme\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pheme_e \"Protoheme\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tdeACP_c \"cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tdeACP_c \"cis-tetradec-7-enoyl-acyl-carrier-protein-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp4Oag_p \"Undecaprenyl-diphosphate-O-antigene-4x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp4Oag_p \"Undecaprenyl-diphosphate-O-antigene-4x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pheme_c \"Protoheme\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pheme_c \"Protoheme\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__D_p \"D-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__D_p \"D-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe120_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe120_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe141_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe141_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3psme_c \"5-O-1-Carboxyvinyl-3-phosphoshikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3psme_c \"5-O-1-Carboxyvinyl-3-phosphoshikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl5b_c \"Cobalt-precorrin-5b\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl5b_c \"Cobalt-precorrin-5b\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fum_c \"Fumarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fum_c \"Fumarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adphep__DD_c \"ADP-D-glycero-D-manno-heptose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adphep__DD_c \"ADP-D-glycero-D-manno-heptose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fum_e \"Fumarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fum_e \"Fumarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5caiz_c \"5-phosphoribosyl-5-carboxyaminoimidazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5caiz_c \"5-phosphoribosyl-5-carboxyaminoimidazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_r5p_p \"alpha-D-Ribose-5-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_r5p_p \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cgmp_e \"2-3-Cyclic-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cgmp_e \"2-3-Cyclic-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fum_p \"Fumarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fum_p \"Fumarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdpgalrmn_c \"Undecaprenyl-diphosphate-galactose-rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdpgalrmn_c \"Undecaprenyl-diphosphate-galactose-rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cgmp_p \"2-3-Cyclic-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cgmp_p \"2-3-Cyclic-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_r5p_c \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_r5p_c \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_r5p_e \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_r5p_e \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnalys_c \"tRNA-Lys\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnalys_c \"tRNA-Lys\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp160_p \"Phosphatidylglycerophosphate-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp160_p \"Phosphatidylglycerophosphate-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enter_p \"Enterochelin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enter_p \"Enterochelin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp160_c \"Phosphatidylglycerophosphate-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp160_c \"Phosphatidylglycerophosphate-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tet_p \"Tetrathionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tet_p \"Tetrathionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apoACP_c \"apoprotein-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apoACP_c \"apoprotein-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmpp_c \"Dimethylallyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmpp_c \"Dimethylallyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enter_e \"Enterochelin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enter_e \"Enterochelin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xtp_c \"XTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xtp_c \"XTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ade_c \"Adenine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ade_c \"Adenine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ade_e \"Adenine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ade_e \"Adenine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4_c \"Salmochelin-S4\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4_c \"Salmochelin-S4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galt_p \"Galactitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galt_p \"Galactitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpg160_c \"cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpg160_c \"cyclopropane-phosphatidylglycerol-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ade_p \"Adenine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ade_p \"Adenine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galt_e \"Galactitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galt_e \"Galactitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_odecoa_c \"Octadecenoyl-CoA-n-C181CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_odecoa_c \"Octadecenoyl-CoA-n-C181CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2odecg3p_p \"2-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2odecg3p_p \"2-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hthr_e \"4hthr_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_app_c \"R-1-Amino-2-propanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_app_c \"R-1-Amino-2-propanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dappa_p \"2-3-diaminopropionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dappa_p \"2-3-diaminopropionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hthr_c \"4-Hydroxy-L-threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hthr_c \"4-Hydroxy-L-threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppp9_c \"Protoporphyrin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppp9_c \"Protoporphyrin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dappa_e \"2-3-diaminopropionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dappa_e \"2-3-diaminopropionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dh3dgal6p_c \"2-Dehydro-3-deoxy-D-galactonate-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dh3dgal6p_c \"2-Dehydro-3-deoxy-D-galactonate-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hthr_p \"4hthr_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dappa_c \"2-3-diaminopropionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dappa_c \"2-3-diaminopropionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urdglyc_c \"--Ureidoglycolate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urdglyc_c \"--Ureidoglycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdca_p \"octadecanoate-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdca_p \"octadecanoate-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ile__L_c \"L-Isoleucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ile__L_c \"L-Isoleucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chitob_e \"Chitobiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chitob_e \"Chitobiose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cobn_c \"Cobyrinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cobn_c \"Cobyrinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacmam_c \"UDP-N-acetyl-D-mannosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacmam_c \"UDP-N-acetyl-D-mannosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ile__L_e \"L-Isoleucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ile__L_e \"L-Isoleucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthrd_p \"Reduced-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthrd_p \"Reduced-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdca_e \"octadecanoate-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdca_e \"octadecanoate-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdca_c \"octadecanoate-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdca_c \"octadecanoate-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urocan_c \"Urocanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urocan_c \"Urocanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthrd_e \"Reduced-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthrd_e \"Reduced-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ile__L_p \"L-Isoleucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ile__L_p \"L-Isoleucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chitob_p \"chitob_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__D_p \"D-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__D_p \"D-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl8x_c \"Cobalt-precorrin-8x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl8x_c \"Cobalt-precorrin-8x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so2_c \"sulfur-dioxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so2_c \"sulfur-dioxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpppg3_c \"Coproporphyrinogen-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpppg3_c \"Coproporphyrinogen-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_selnp_c \"Selenophosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_selnp_c \"Selenophosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__D_e \"D-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__D_e \"D-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__D_c \"D-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__D_c \"D-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so2_p \"sulfur-dioxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so2_p \"sulfur-dioxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ophb_c \"3-Octaprenyl-4-hydroxybenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ophb_c \"3-Octaprenyl-4-hydroxybenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhm3p_c \"1-6-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhm3p_c \"1-6-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_guln__L_e \"guln__L_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ascb__L_p \"L-Ascorbate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ascb__L_p \"L-Ascorbate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_guln__L_c \"guln__L_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phpyr_c \"Phenylpyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phpyr_c \"Phenylpyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5mthf_c \"5-Methyltetrahydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5mthf_c \"5-Methyltetrahydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5cm2hmu_c \"5-Carboxymethyl-2-hydroxymuconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5cm2hmu_c \"5-Carboxymethyl-2-hydroxymuconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_guln__L_p \"guln__L_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ascb__L_e \"L-Ascorbate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ascb__L_e \"L-Ascorbate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_melib_p \"Melibiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_melib_p \"Melibiose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ptrc_p \"Putrescine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ptrc_p \"Putrescine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mnl1p_c \"D-Mannitol-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mnl1p_c \"D-Mannitol-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ptrc_c \"Putrescine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ptrc_c \"Putrescine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_melib_c \"Melibiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_melib_c \"Melibiose\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uama_c \"UDP-N-acetylmuramoyl-L-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uama_c \"UDP-N-acetylmuramoyl-L-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ptrc_e \"Putrescine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ptrc_e \"Putrescine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu__L_c \"L-Glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu__L_c \"L-Glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu__L_e \"L-Glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu__L_e \"L-Glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnatrp_c \"tRNA-Trp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnatrp_c \"tRNA-Trp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu__L_p \"L-Glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu__L_p \"L-Glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__L_c \"L-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__L_c \"L-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__L_e \"L-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__L_e \"L-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__L_p \"L-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__L_p \"L-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe180_c \"phosphatidylethanolamine-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe180_c \"phosphatidylethanolamine-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_13dpg_c \"3-Phospho-D-glyceroyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_13dpg_c \"3-Phospho-D-glyceroyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu1sa_c \"L-Glutamate-1-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu1sa_c \"L-Glutamate-1-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thmmp_c \"Thiamin-monophosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thmmp_c \"Thiamin-monophosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ag_e \"silver\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ag_e \"silver\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tag6p__D_c \"D-Tagatose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tag6p__D_c \"D-Tagatose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp19Oag_p \"Undecaprenyl-diphosphate-O-antigene-19x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp19Oag_p \"Undecaprenyl-diphosphate-O-antigene-19x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdp_c \"CDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdp_c \"CDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mso3_e \"methanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mso3_e \"methanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg140_p \"Phosphatidylglycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg140_p \"Phosphatidylglycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3ps_e \"Glycerophosphoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3ps_e \"Glycerophosphoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3ps_c \"Glycerophosphoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3ps_c \"Glycerophosphoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arg__L_p \"L-Arginine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arg__L_p \"L-Arginine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tsul_p \"Thiosulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tsul_p \"Thiosulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg140_c \"Phosphatidylglycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg140_c \"Phosphatidylglycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arg__L_e \"L-Arginine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arg__L_e \"L-Arginine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pep_p \"Phosphoenolpyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pep_p \"Phosphoenolpyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arg__L_c \"L-Arginine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arg__L_c \"L-Arginine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trdrd_c \"Reduced-thioredoxin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trdrd_c \"Reduced-thioredoxin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3ps_p \"Glycerophosphoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3ps_p \"Glycerophosphoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tsul_e \"Thiosulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tsul_e \"Thiosulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tsul_c \"Thiosulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tsul_c \"Thiosulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dudp_c \"dUDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dudp_c \"dUDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_msa_c \"msa_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcr_e \"D-Glucarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcr_e \"D-Glucarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydxn_c \"Pyridoxine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydxn_c \"Pyridoxine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr2_ST_p \"12dgr2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cit_e \"Citrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cit_e \"Citrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdodecg_c \"CDP-1-2-dioctadecanoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdodecg_c \"CDP-1-2-dioctadecanoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cit_c \"Citrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cit_c \"Citrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcr_p \"D-Glucarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcr_p \"D-Glucarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cit_p \"Citrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cit_p \"Citrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fdp_c \"D-Fructose-1-6-bisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fdp_c \"D-Fructose-1-6-bisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_isetac_e \"Isethionic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_isetac_e \"Isethionic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg181_p \"Phosphatidylglycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg181_p \"Phosphatidylglycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aacoa_c \"Acetoacetyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aacoa_c \"Acetoacetyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_isetac_p \"Isethionic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_isetac_p \"Isethionic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg181_c \"Phosphatidylglycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg181_c \"Phosphatidylglycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_t3c11vaceACP_c \"trans-3-cis-11-vacceoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_t3c11vaceACP_c \"trans-3-cis-11-vacceoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1odec11eg3p_p \"1-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1odec11eg3p_p \"1-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4ampm_c \"4-Amino-2-methyl-5-phosphomethylpyrimidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4ampm_c \"4-Amino-2-methyl-5-phosphomethylpyrimidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1odec11eg3p_c \"1-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1odec11eg3p_c \"1-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpe180_c \"cyclopropane-phosphatidylethanolamine-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpe180_c \"cyclopropane-phosphatidylethanolamine-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4adcho_c \"4-amino-4-deoxychorismate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4adcho_c \"4-amino-4-deoxychorismate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hpalmACP_c \"R-3-hydroxypalmitoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hpalmACP_c \"R-3-hydroxypalmitoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdcea_p \"Hexadecenoate-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdcea_p \"Hexadecenoate-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp180_c \"Phosphatidylglycerophosphate-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp180_c \"Phosphatidylglycerophosphate-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galur_p \"D-Galacturonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galur_p \"D-Galacturonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdcea_c \"Hexadecenoate-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdcea_c \"Hexadecenoate-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pphn_c \"Prephenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pphn_c \"Prephenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdcea_e \"Hexadecenoate-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdcea_e \"Hexadecenoate-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galur_e \"D-Galacturonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galur_e \"D-Galacturonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galur_c \"D-Galacturonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galur_c \"D-Galacturonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp180_p \"Phosphatidylglycerophosphate-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp180_p \"Phosphatidylglycerophosphate-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acon__C_c \"cis-Aconitate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acon__C_c \"cis-Aconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lyx__L_c \"L-Lyxose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lyx__L_c \"L-Lyxose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr181_c \"1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr181_c \"1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acon__C_p \"cis-Aconitate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acon__C_p \"cis-Aconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rml1p_c \"L-Rhamnulose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rml1p_c \"L-Rhamnulose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lyx__L_p \"L-Lyxose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lyx__L_p \"L-Lyxose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr181_p \"1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr181_p \"1-2-Diacyl-sn-glycerol-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_psclys_e \"psicoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_psclys_e \"psicoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acon__T_c \"trans-Aconitate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acon__T_c \"trans-Aconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urate_c \"Urate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urate_c \"Urate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_psclys_p \"psicoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_psclys_p \"psicoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdpofuc_c \"GDP-4-oxo-L-fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdpofuc_c \"GDP-4-oxo-L-fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pi_p \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pi_p \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pi_c \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pi_c \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pi_e \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pi_e \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp18Oag_p \"Undecaprenyl-diphosphate-O-antigene-18x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp18Oag_p \"Undecaprenyl-diphosphate-O-antigene-18x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_OA_ST_p \"OA_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_slcys_c \"slcys_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg141_c \"acyl-phosphatidylglycerol-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg141_c \"acyl-phosphatidylglycerol-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etoh_e \"Ethanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etoh_e \"Ethanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etoh_c \"Ethanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etoh_c \"Ethanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydx_p \"pydx_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydx_e \"Pyridoxal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydx_e \"Pyridoxal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydx_c \"Pyridoxal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydx_c \"Pyridoxal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur_e \"D-Glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur_e \"D-Glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur_c \"D-Glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur_c \"D-Glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hisp_c \"L-Histidinol-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hisp_c \"L-Histidinol-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acg5p_c \"N-Acetyl-L-glutamyl-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acg5p_c \"N-Acetyl-L-glutamyl-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tag1p__D_c \"D-Tagatose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tag1p__D_c \"D-Tagatose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sectrna_c \"L-Selenocysteinyl-tRNA-Sec\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sectrna_c \"L-Selenocysteinyl-tRNA-Sec\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur_p \"D-Glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur_p \"D-Glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amet_c \"S-Adenosyl-L-methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amet_c \"S-Adenosyl-L-methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acglc__D_c \"6-Acetyl-D-glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acglc__D_c \"6-Acetyl-D-glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mlthf_c \"5-10-Methylenetetrahydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mlthf_c \"5-10-Methylenetetrahydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_u23ga_c \"UDP-2-3-bis-3-hydroxytetradecanoyl-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_u23ga_c \"UDP-2-3-bis-3-hydroxytetradecanoyl-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2oh3d_c \"2oh3d_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc__R_p \"R-Glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc__R_p \"R-Glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc__R_e \"R-Glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc__R_e \"R-Glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc__R_c \"R-Glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc__R_c \"R-Glycerate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn181_p \"cardiolipin-tetraoctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn181_p \"cardiolipin-tetraoctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3c4mop_c \"3-Carboxy-4-methyl-2-oxopentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3c4mop_c \"3-Carboxy-4-methyl-2-oxopentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmhep1p_c \"D-Glycero-D-manno-heptose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmhep1p_c \"D-Glycero-D-manno-heptose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2shchc_c \"2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2shchc_c \"2-Succinyl-6-hydroxy-2-4-cyclohexadiene-1-carboxylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cmp_e \"CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cmp_e \"CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cmp_c \"CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cmp_c \"CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dscl_c \"dihydrosirohydrochlorin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dscl_c \"dihydrosirohydrochlorin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn161_p \"cardiolipin-tetrahexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn161_p \"cardiolipin-tetrahexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cmp_p \"CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cmp_p \"CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo_c \"3-Deoxy-D-manno-2-octulosonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo_c \"3-Deoxy-D-manno-2-octulosonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_itp_c \"ITP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_itp_c \"ITP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg180_c \"acyl-phosphatidylglycerol-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg180_c \"acyl-phosphatidylglycerol-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fruur_p \"D-Fructuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fruur_p \"D-Fructuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fruur_e \"D-Fructuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fruur_e \"D-Fructuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fruur_c \"D-Fructuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fruur_c \"D-Fructuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppi_c \"Inorganic-triphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppi_c \"Inorganic-triphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man1p_c \"D-Mannose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man1p_c \"D-Mannose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps120_c \"phosphatidylserine-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps120_c \"phosphatidylserine-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaleu_c \"tRNA-Leu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaleu_c \"tRNA-Leu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxB_e \"Ferrioxamine-B\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxB_e \"Ferrioxamine-B\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mettrna_c \"L-Methionyl-tRNA-Met\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mettrna_c \"L-Methionyl-tRNA-Met\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxB_c \"Ferrioxamine-B\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxB_c \"Ferrioxamine-B\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_camp_c \"cAMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_camp_c \"cAMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxB_p \"Ferrioxamine-B\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxB_p \"Ferrioxamine-B\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tton_e \"tton_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_remnant1_p \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_remnant1_p \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pdx5p_c \"Pyridoxine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pdx5p_c \"Pyridoxine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_remnant1_e \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_remnant1_e \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_remnant1_c \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_remnant1_c \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhb_c \"2-3-Dihydroxybenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhb_c \"2-3-Dihydroxybenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdpgal_c \"Undecaprenyl-diphosphate-galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdpgal_c \"Undecaprenyl-diphosphate-galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1hdec9eg3p_p \"1-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1hdec9eg3p_p \"1-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ump_p \"3-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ump_p \"3-UMP\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa__cold_p \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa__cold_p \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1hdec9eg3p_c \"1-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1hdec9eg3p_c \"1-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa__cold_e \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa__cold_e \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ump_e \"3-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ump_e \"3-UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fldox_c \"flavodoxin-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fldox_c \"flavodoxin-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa__cold_c \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa__cold_c \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdcea_c \"octadecenoate-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdcea_c \"octadecenoate-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdcea_e \"octadecenoate-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdcea_e \"octadecenoate-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_melib_e \"Melibiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_melib_e \"Melibiose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdcea_p \"octadecenoate-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdcea_p \"octadecenoate-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fmn_c \"FMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fmn_c \"FMN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdp4dh6doglc_c \"CDP-4-dehydro-6-deoxy-D-glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdp4dh6doglc_c \"CDP-4-dehydro-6-deoxy-D-glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phom_c \"O-Phospho-L-homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phom_c \"O-Phospho-L-homoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr161_p \"1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr161_p \"1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3_p \"Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3_p \"Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octdp_c \"all-trans-Octaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octdp_c \"all-trans-Octaprenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_icolipa_c \"inner-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_icolipa_c \"inner-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cynt_p \"Cyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cynt_p \"Cyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa2_ST_p \"pa2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3_c \"Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3_c \"Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr161_c \"1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr161_c \"1-2-Diacyl-sn-glycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3_e \"Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3_e \"Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp2Oag_p \"Undecaprenyl-diphosphate-O-antigene-2x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp2Oag_p \"Undecaprenyl-diphosphate-O-antigene-2x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cynt_e \"Cyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cynt_e \"Cyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_26dap__M_e \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_26dap__M_e \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcn_p \"D-Gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcn_p \"D-Gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_26dap__M_c \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_26dap__M_c \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs3_p \"23dhbzs3_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo4_c \"udcpo4_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo4_e \"udcpo4_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcn_c \"D-Gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcn_c \"D-Gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam_p \"N-Acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam_p \"N-Acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcn_e \"D-Gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcn_e \"D-Gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_26dap__M_p \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_26dap__M_p \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo4_p \"udcpo4_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs3_c \"23dhbzs3_c\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs3_e \"23dhbzs3_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaala_c \"tRNA-Ala\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaala_c \"tRNA-Ala\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crncoa_c \"L-Carnitinyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crncoa_c \"L-Carnitinyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_indole_p \"Indole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_indole_p \"Indole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ocvac11eACP_c \"3-oxo-cis-vacc-11-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ocvac11eACP_c \"3-oxo-cis-vacc-11-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apolpp_p \"apolpp_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3oodcoa_c \"3-Oxooctadecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3oodcoa_c \"3-Oxooctadecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_indole_e \"Indole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_indole_e \"Indole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23doguln_c \"2-3-Dioxo-L-gulonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23doguln_c \"2-3-Dioxo-L-gulonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_indole_c \"Indole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_indole_c \"Indole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cl_c \"Chloride\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cl_c \"Chloride\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucglu_c \"N2-Succinyl-L-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucglu_c \"N2-Succinyl-L-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hoctaACP_c \"R-3-Hydroxyoctadecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hoctaACP_c \"R-3-Hydroxyoctadecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_his__L_c \"L-Histidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_his__L_c \"L-Histidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2mahmp_c \"2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2mahmp_c \"2-Methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_imp_p \"IMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_imp_p \"IMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbard_p \"periplasmic-protein-disulfide-isomerase-I-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbard_p \"periplasmic-protein-disulfide-isomerase-I-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phphhlipa_c \"phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phphhlipa_c \"phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_f1p_c \"D-Fructose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_f1p_c \"D-Fructose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhna_c \"1-4-Dihydroxy-2-naphthoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhna_c \"1-4-Dihydroxy-2-naphthoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_imp_c \"IMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_imp_c \"IMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lys__L_c \"L-Lysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lys__L_c \"L-Lysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gsn_e \"Guanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gsn_e \"Guanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam_c \"ferroxamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam_c \"ferroxamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe181_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe181_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam_e \"ferroxamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam_e \"ferroxamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gsn_c \"Guanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gsn_c \"Guanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_u3hga_c \"UDP-3-O-3-hydroxytetradecanoyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_u3hga_c \"UDP-3-O-3-hydroxytetradecanoyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gsn_p \"Guanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gsn_p \"Guanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_t3c5ddeceACP_c \"trans-3-cis-5-dodecenoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_t3c5ddeceACP_c \"trans-3-cis-5-dodecenoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hoctACP_c \"R-3-Hydroxyoctanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hoctACP_c \"R-3-Hydroxyoctanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pram_c \"5-Phospho-beta-D-ribosylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pram_c \"5-Phospho-beta-D-ribosylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nmn_e \"NMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nmn_e \"NMN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nmn_c \"NMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nmn_c \"NMN\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_34dhpacet_c \"3-4-Dihydroxyphenylacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_34dhpacet_c \"3-4-Dihydroxyphenylacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpp_c \"Undecaprenyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcpp_c \"Undecaprenyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nmn_p \"NMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nmn_p \"NMN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anth_c \"Anthranilate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anth_c \"Anthranilate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tag__D_p \"D-Tagatose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tag__D_p \"D-Tagatose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacmamu_c \"UDP-N-acetyl-D-mannosaminouronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacmamu_c \"UDP-N-acetyl-D-mannosaminouronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tma_p \"trimethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tma_p \"trimethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pyam5p_c \"Pyridoxamine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pyam5p_c \"Pyridoxamine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_suchms_c \"O-Succinyl-L-homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_suchms_c \"O-Succinyl-L-homoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prpp_c \"5-Phospho-alpha-D-ribose-1-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_prpp_c \"5-Phospho-alpha-D-ribose-1-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tag__D_e \"D-Tagatose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tag__D_e \"D-Tagatose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tma_e \"trimethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tma_e \"trimethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adphep__LD_c \"ADP-L-glycero-D-manno-heptose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adphep__LD_c \"ADP-L-glycero-D-manno-heptose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnathr_c \"tRNA-Thr\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnathr_c \"tRNA-Thr\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ig3p_c \"C--3-Indolyl-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ig3p_c \"C--3-Indolyl-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mobd_e \"Molybdate-MoO4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ooctdACP_c \"3-Oxooctadecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ooctdACP_c \"3-Oxooctadecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xu5p__L_c \"L-Xylulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xu5p__L_c \"L-Xylulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mobd_c \"Molybdate-MoO4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa180_c \"1-2-dioctadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa180_c \"1-2-dioctadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__D_p \"D-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__D_p \"D-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2obut_c \"2-Oxobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2obut_c \"2-Oxobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdca_p \"Hexadecanoate-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdca_p \"Hexadecanoate-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa180_p \"1-2-dioctadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa180_p \"1-2-dioctadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mobd_p \"Molybdate-MoO4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdca_e \"Hexadecanoate-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdca_e \"Hexadecanoate-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdca_c \"Hexadecanoate-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdca_c \"Hexadecanoate-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__R__L_c \"L-methionine-R-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__R__L_c \"L-methionine-R-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__D_e \"D-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__D_e \"D-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4per_c \"4-Phospho-D-erythronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4per_c \"4-Phospho-D-erythronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa161_p \"1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa161_p \"1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpLa4n_c \"uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpLa4n_c \"uridine-5--diphospho-beta-4-deoxy-4-amino-L-arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_all__D_p \"D-Allose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_all__D_p \"D-Allose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__R__L_e \"L-methionine-R-sulfoxide\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__R__L_e \"L-methionine-R-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tmao_p \"Trimethylamine-N-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tmao_p \"Trimethylamine-N-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa161_c \"1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa161_c \"1-2-dihexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nad_c \"Nicotinamide-adenine-dinucleotide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nad_c \"Nicotinamide-adenine-dinucleotide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_all__D_e \"D-Allose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_all__D_e \"D-Allose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tmao_e \"Trimethylamine-N-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tmao_e \"Trimethylamine-N-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm__un_e \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm__un_e \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm__un_c \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm__un_c \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mmcoa__S_c \"S-Methylmalonyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mmcoa__S_c \"S-Methylmalonyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltpt_p \"Maltopentaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltpt_p \"Maltopentaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_au_p \"Gold-Au\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm__un_p \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm__un_p \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltpt_c \"Maltopentaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltpt_c \"Maltopentaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltpt_e \"Maltopentaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltpt_e \"Maltopentaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__R_p \"R-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__R_p \"R-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe140_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe140_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam6p_c \"D-Glucosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam6p_c \"D-Glucosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxE_e \"Ferrioxamine-E\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxE_e \"Ferrioxamine-E\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam6p_e \"D-Glucosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam6p_e \"D-Glucosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxE_c \"Ferrioxamine-E\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxE_c \"Ferrioxamine-E\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_b2coa_c \"Crotonoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_b2coa_c \"Crotonoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam6p_p \"D-Glucosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam6p_p \"D-Glucosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chor_c \"chorismate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chor_c \"chorismate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abz_e \"4-Aminobenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abz_e \"4-Aminobenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abz_c \"4-Aminobenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abz_c \"4-Aminobenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocblp_c \"Adenosylcobalamin-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocblp_c \"Adenosylcobalamin-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_td2coa_c \"trans-Tetradec-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_td2coa_c \"trans-Tetradec-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbcrd_p \"protein-disulfide-isomerase-II-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbcrd_p \"protein-disulfide-isomerase-II-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3omrsACP_c \"3-Oxotetradecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3omrsACP_c \"3-Oxotetradecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe140_c \"phosphatidylethanolamine-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe140_c \"phosphatidylethanolamine-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmana_c \"N-Acetyl-D-mannosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmana_c \"N-Acetyl-D-mannosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmana_e \"N-Acetyl-D-mannosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmana_e \"N-Acetyl-D-mannosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mmcoa__R_c \"R-Methylmalonyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mmcoa__R_c \"R-Methylmalonyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe140_p \"phosphatidylethanolamine-ditetradecanoyl-n-C140\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe140_p \"phosphatidylethanolamine-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg141_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg141_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmana_p \"N-Acetyl-D-mannosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmana_p \"N-Acetyl-D-mannosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_frulys_e \"fructoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_frulys_e \"fructoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aspsa_c \"L-Aspartate-4-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aspsa_c \"L-Aspartate-4-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp17Oag_p \"Undecaprenyl-diphosphate-O-antigene-17x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp17Oag_p \"Undecaprenyl-diphosphate-O-antigene-17x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_Sfglutth_c \"S-Formylglutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_Sfglutth_c \"S-Formylglutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1tdec7eg3p_c \"1-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1tdec7eg3p_c \"1-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1tdec7eg3p_p \"1-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1tdec7eg3p_p \"1-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydxn_p \"pydxn_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe180_p \"phosphatidylethanolamine-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe180_p \"phosphatidylethanolamine-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydxn_e \"Pyridoxine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydxn_e \"Pyridoxine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chol_p \"Choline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chol_p \"Choline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3odecACP_c \"3-Oxodecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3odecACP_c \"3-Oxodecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpLa4o_c \"UDP-4-keto-pyranose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpLa4o_c \"UDP-4-keto-pyranose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_na1_c \"Sodium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_na1_c \"Sodium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_na1_e \"Sodium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_na1_e \"Sodium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aact_c \"Aminoacetone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aact_c \"Aminoacetone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chol_c \"Choline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chol_c \"Choline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chol_e \"Choline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chol_e \"Choline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_na1_p \"Sodium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_na1_p \"Sodium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ugmda_c \"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ugmda_c \"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dnad_c \"Deamino-NAD\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dnad_c \"Deamino-NAD\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtmp_c \"dTMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtmp_c \"dTMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtmp_e \"dTMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtmp_e \"dTMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dd2coa_c \"trans-Dodec-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dd2coa_c \"trans-Dodec-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_drib_e \"2-Deoxy-D-ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_drib_e \"2-Deoxy-D-ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_drib_c \"2-Deoxy-D-ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_drib_c \"2-Deoxy-D-ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtmp_p \"dTMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtmp_p \"dTMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dadp_c \"dADP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dadp_c \"dADP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein3px4p_p \"two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein3px4p_p \"two-disacharide-linked-murein-units-tripeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_drib_p \"2-Deoxy-D-ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_drib_p \"2-Deoxy-D-ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_agm_p \"Agmatine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_agm_p \"Agmatine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3opalmACP_c \"3-Oxohexadecanoyl-acyl-carrier-protein\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3opalmACP_c \"3-Oxohexadecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_agm_c \"Agmatine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_agm_c \"Agmatine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_agm_e \"Agmatine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_agm_e \"Agmatine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hlipa_c \"heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hlipa_c \"heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xylu__L_p \"L-Xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xylu__L_p \"L-Xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa181_p \"1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa181_p \"1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xylu__L_c \"L-Xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xylu__L_c \"L-Xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xylu__L_e \"L-Xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xylu__L_e \"L-Xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa181_c \"1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa181_c \"1-2-dioctadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn_e \"coprogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn_e \"coprogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ipdp_c \"Isopentenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ipdp_c \"Isopentenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_frulys_p \"fructoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_frulys_p \"fructoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyrtrna_c \"L-Tyrosyl-tRNA-Tyr\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyrtrna_c \"L-Tyrosyl-tRNA-Tyr\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_val__L_p \"L-Valine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_val__L_p \"L-Valine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbdox_c \"fused-thioldisulfide-interchange-protein-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbdox_c \"fused-thioldisulfide-interchange-protein-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_e4p_c \"D-Erythrose-4-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_e4p_c \"D-Erythrose-4-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3oddecACP_c \"3-Oxododecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3oddecACP_c \"3-Oxododecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_val__L_e \"L-Valine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_val__L_e \"L-Valine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adn_e \"Adenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adn_e \"Adenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_val__L_c \"L-Valine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_val__L_c \"L-Valine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn_c \"coprogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn_c \"coprogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ditp_c \"dITP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ditp_c \"dITP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3otdcoa_c \"3-Oxotetradecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3otdcoa_c \"3-Oxotetradecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_26dap__LL_c \"LL-2-6-Diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_26dap__LL_c \"LL-2-6-Diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__L_e \"L-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__L_e \"L-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_micit_c \"methylisocitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_micit_c \"methylisocitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_accoa_c \"Acetyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_accoa_c \"Acetyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__L_p \"L-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__L_p \"L-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hco3_c \"Bicarbonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hco3_c \"Bicarbonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2s_p \"Superoxide-anion\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2s_p \"Superoxide-anion\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ctbt_p \"crotonobetaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ctbt_p \"crotonobetaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_d5kgp_c \"d5kgp_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3php_c \"3-Phosphohydroxypyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3php_c \"3-Phosphohydroxypyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2s_c \"Superoxide-anion\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2s_c \"Superoxide-anion\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ctbt_c \"crotonobetaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ctbt_c \"crotonobetaine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucorn_c \"N2-Succinyl-L-ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucorn_c \"N2-Succinyl-L-ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdhdecg_c \"CDP-1-2-dihexadecanoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdhdecg_c \"CDP-1-2-dihexadecanoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rml_c \"L-Rhamnulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rml_c \"L-Rhamnulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg140_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg140_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2tdecg3p_c \"2-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2tdecg3p_c \"2-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdhdec9eg_c \"CDP-1-2-dihexadec-9-enoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdhdec9eg_c \"CDP-1-2-dihexadec-9-enoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg140_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg140_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hmgth_c \"hydroxymethylglutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hmgth_c \"hydroxymethylglutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acnam_p \"N-Acetylneuraminate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acnam_p \"N-Acetylneuraminate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_butso3_e \"butanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_butso3_e \"butanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fadh2_c \"Flavin-adenine-dinucleotide-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fadh2_c \"Flavin-adenine-dinucleotide-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acnam_e \"N-Acetylneuraminate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acnam_e \"N-Acetylneuraminate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hpyr_c \"Hydroxypyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hpyr_c \"Hydroxypyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_butso3_p \"butanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_butso3_p \"butanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cd2_e \"Cadmium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cd2_e \"Cadmium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fmettrna_c \"N-Formylmethionyl-tRNA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fmettrna_c \"N-Formylmethionyl-tRNA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cd2_c \"Cadmium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cd2_c \"Cadmium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cob2nda_c \"Cob-II-yrinate-a-c-diamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cob2nda_c \"Cob-II-yrinate-a-c-diamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg180_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg180_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cd2_p \"Cadmium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cd2_p \"Cadmium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_paps_c \"3-Phosphoadenylyl-sulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_paps_c \"3-Phosphoadenylyl-sulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpg180_c \"cyclopropane-phosphatidylglycerol-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpg180_c \"cyclopropane-phosphatidylglycerol-dioctadec-11-12-cyclo-anoyl-n-C180-cyclo\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg180_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg180_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2hdec9eg3p_c \"2-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2hdec9eg3p_c \"2-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein3p3p_p \"two-linked-disacharide-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein3p3p_p \"two-linked-disacharide-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uppg3_c \"Uroporphyrinogen-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uppg3_c \"Uroporphyrinogen-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbi_c \"Adenosyl-cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbi_c \"Adenosyl-cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2hdec9eg3p_p \"2-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2hdec9eg3p_p \"2-hexadec-9-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gtspmd_c \"Glutathionylspermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gtspmd_c \"Glutathionylspermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpe160_c \"cyclopropane-phosphatidylethanolamine-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpe160_c \"cyclopropane-phosphatidylethanolamine-dihexadec-9-10-cyclo-anoyl-n-C160-cyclo\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acetol_c \"Acetol\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acetol_c \"Acetol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gcald_c \"Glycolaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gcald_c \"Glycolaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mso3_p \"methanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mso3_p \"methanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaasn_c \"tRNA-Asn\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaasn_c \"tRNA-Asn\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tton_p \"tton_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe141_p \"phosphatidylethanolamine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe141_p \"phosphatidylethanolamine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe161_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe161_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phetrna_c \"L-Phenylalanyl-tRNA-Phe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phetrna_c \"L-Phenylalanyl-tRNA-Phe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe161_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe161_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe141_c \"phosphatidylethanolamine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe141_c \"phosphatidylethanolamine-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcacoa_c \"Decanoyl-CoA-n-C100CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcacoa_c \"Decanoyl-CoA-n-C100CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_his__L_p \"L-Histidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_his__L_p \"L-Histidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdpddman_c \"GDP-4-dehydro-6-deoxy-D-mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdpddman_c \"GDP-4-dehydro-6-deoxy-D-mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5mtr_c \"5-Methylthio-D-ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5mtr_c \"5-Methylthio-D-ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hba_c \"4-Hydroxy-benzyl-alcohol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hba_c \"4-Hydroxy-benzyl-alcohol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ippm_c \"2-Isopropylmaleate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ippm_c \"2-Isopropylmaleate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xylu__D_c \"D-Xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xylu__D_c \"D-Xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaasp_c \"tRNA-Asp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaasp_c \"tRNA-Asp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp6Oag_p \"Undecaprenyl-diphosphate-O-antigene-6x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp6Oag_p \"Undecaprenyl-diphosphate-O-antigene-6x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2_e \"H2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2_e \"H2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpgr_c \"udcpgr_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2_c \"H2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2_c \"H2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcr_c \"D-Glucarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcr_c \"D-Glucarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thrtrna_c \"L-Threonyl-tRNA-Thr\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thrtrna_c \"L-Threonyl-tRNA-Thr\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltttr_e \"Maltotetraose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltttr_e \"Maltotetraose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps160_c \"phosphatidylserine-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps160_c \"phosphatidylserine-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_zn2_p \"Zinc\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_zn2_p \"Zinc\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltttr_c \"Maltotetraose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltttr_c \"Maltotetraose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp11Oag_p \"Undecaprenyl-diphosphate-O-antigene-11x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp11Oag_p \"Undecaprenyl-diphosphate-O-antigene-11x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2_p \"H2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2_p \"H2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2s_e \"Superoxide-anion\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2s_e \"Superoxide-anion\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltttr_p \"Maltotetraose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltttr_p \"Maltotetraose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_zn2_c \"Zinc\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_zn2_c \"Zinc\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__L_c \"L-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__L_c \"L-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca2und_p \"enterobacterial-common-antigen-x2-undecaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca2und_p \"enterobacterial-common-antigen-x2-undecaprenyl-diphosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmhep17bp_c \"D-Glycero-D-manno-heptose-1-7-bisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmhep17bp_c \"D-Glycero-D-manno-heptose-1-7-bisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tungs_e \"tungstate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tungs_e \"tungstate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thr__L_p \"L-Threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thr__L_p \"L-Threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hpppn_e \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hpppn_e \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tungs_c \"tungstate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tungs_c \"tungstate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mthgxl_c \"Methylglyoxal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mthgxl_c \"Methylglyoxal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpgrm_c \"udcpgrm_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thr__L_c \"L-Threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thr__L_c \"L-Threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thr__L_e \"L-Threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thr__L_e \"L-Threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tungs_p \"tungstate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tungs_p \"tungstate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hpppn_p \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hpppn_p \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abut_e \"4-Aminobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abut_e \"4-Aminobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abut_c \"4-Aminobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abut_c \"4-Aminobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_25dkglcn_c \"2-5-diketo-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_25dkglcn_c \"2-5-diketo-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe120_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe120_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gln__L_p \"L-Glutamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gln__L_p \"L-Glutamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abut_p \"4-Aminobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abut_p \"4-Aminobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5p3p_p \"two-linked-disacharide-pentapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5p3p_p \"two-linked-disacharide-pentapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gln__L_e \"L-Glutamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gln__L_e \"L-Glutamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_imacp_c \"3-Imidazol-4-yl-2-oxopropyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_imacp_c \"3-Imidazol-4-yl-2-oxopropyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gln__L_c \"L-Glutamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gln__L_c \"L-Glutamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp161_c \"Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp161_c \"Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23ddhb_c \"2-3-Dihydro-2-3-dihydroxybenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23ddhb_c \"2-3-Dihydro-2-3-dihydroxybenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpg_p \"UDPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpg_p \"UDPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcamp_c \"N6-1-2-Dicarboxyethyl-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcamp_c \"N6-1-2-Dicarboxyethyl-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpg_e \"UDPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpg_e \"UDPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpg_c \"UDPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpg_c \"UDPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_co2_p \"CO2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_co2_p \"CO2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipidX_c \"2-3-Bis-3-hydroxytetradecanoyl-beta-D-glucosaminyl-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipidX_c \"2-3-Bis-3-hydroxytetradecanoyl-beta-D-glucosaminyl-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp16Oag_p \"Undecaprenyl-diphosphate-O-antigene-16x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp16Oag_p \"Undecaprenyl-diphosphate-O-antigene-16x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_co2_c \"CO2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_co2_c \"CO2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_co2_e \"CO2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_co2_e \"CO2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mql8_c \"Menaquinol-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mql8_c \"Menaquinol-8\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amp_p \"AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amp_p \"AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ohcoa_c \"3-Oxohexanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ohcoa_c \"3-Oxohexanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dhglcn_c \"2-Dehydro-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dhglcn_c \"2-Dehydro-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glx_c \"Glyoxylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glx_c \"Glyoxylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2hh24dd_c \"2-Hydroxyhepta-2-4-dienedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2hh24dd_c \"2-Hydroxyhepta-2-4-dienedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2tdecg3p_p \"2-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2tdecg3p_p \"2-tetradecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn_c \"L-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn_c \"L-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3amp_e \"3-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3amp_e \"3-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn_e \"L-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn_e \"L-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdolipid4_c \"KDO-lipid-IV-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdolipid4_c \"KDO-lipid-IV-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp140_c \"Phosphatidylglycerophosphate-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp140_c \"Phosphatidylglycerophosphate-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3amp_p \"3-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3amp_p \"3-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn_p \"L-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn_p \"L-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp140_p \"Phosphatidylglycerophosphate-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp140_p \"Phosphatidylglycerophosphate-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmbzid_c \"5-6-Dimethylbenzimidazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmbzid_c \"5-6-Dimethylbenzimidazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_grxrd_c \"glutaredoxin-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_grxrd_c \"glutaredoxin-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amp_e \"AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amp_e \"AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pc_c \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pc_c \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prfp_c \"1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_prfp_c \"1-5-Phosphoribosyl-5-5-phosphoribosylamino-methylideneaminoimidazole-4-carboxamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn__D_p \"D-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn__D_p \"D-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc2p_e \"Glycerol-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc2p_e \"Glycerol-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oxur_c \"Oxalureate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oxur_c \"Oxalureate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn__D_c \"D-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn__D_c \"D-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2cpr5p_c \"1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2cpr5p_c \"1-2-Carboxyphenylamino-1-deoxy-D-ribulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_succ_p \"Succinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_succ_p \"Succinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp141_p \"Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp141_p \"Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_diglyceride_prolpp_c \"diglyceride_prolpp_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thym_e \"Thymine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thym_e \"Thymine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dump_c \"dUMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dump_c \"dUMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp141_c \"Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp141_c \"Phosphatidylglycerophosphate-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_succ_c \"Succinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_succ_c \"Succinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_succ_e \"Succinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_succ_e \"Succinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnagln_c \"tRNA-Gln\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnagln_c \"tRNA-Gln\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ahcys_c \"S-Adenosyl-L-homocysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ahcys_c \"S-Adenosyl-L-homocysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dump_p \"dUMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dump_p \"dUMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3oocoa_c \"3-Oxooctanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3oocoa_c \"3-Oxooctanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acnam_c \"N-Acetylneuraminate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acnam_c \"N-Acetylneuraminate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man_e \"D-Mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man_e \"D-Mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_histrna_c \"L-Histidyl-tRNA-His\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_histrna_c \"L-Histidyl-tRNA-His\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man_c \"D-Mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man_c \"D-Mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man_p \"D-Mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man_p \"D-Mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rbl__L_c \"L-Ribulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rbl__L_c \"L-Ribulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps180_c \"phosphatidylserine-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps180_c \"phosphatidylserine-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_od2coa_c \"trans-Octadec-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_od2coa_c \"trans-Octadec-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nadph_c \"Nicotinamide-adenine-dinucleotide-phosphate--reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nadph_c \"Nicotinamide-adenine-dinucleotide-phosphate--reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hhdcoa_c \"S-3-Hydroxyhexadecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hhdcoa_c \"S-3-Hydroxyhexadecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_k_p \"potassium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_k_p \"potassium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpacd_p \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpacd_p \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxcoa_c \"Hexanoyl-CoA-n-C60CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxcoa_c \"Hexanoyl-CoA-n-C60CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_k_c \"potassium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_k_c \"potassium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_k_e \"potassium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_k_e \"potassium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prolpp_c \"prolpp_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpacd_e \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpacd_e \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dad__5_c \"5-Deoxyadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dad__5_c \"5-Deoxyadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipaOA_e \"colipaOA_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no3_c \"Nitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no3_c \"Nitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aicar_c \"5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aicar_c \"5-Amino-1-5-Phospho-D-ribosyl-imidazole-4-carboxamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dms_e \"Dimethyl-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dms_e \"Dimethyl-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no3_p \"Nitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no3_p \"Nitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dms_p \"Dimethyl-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dms_p \"Dimethyl-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaval_c \"tRNA-Val\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaval_c \"tRNA-Val\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3htdcoa_c \"S-3-Hydroxytetradecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3htdcoa_c \"S-3-Hydroxytetradecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2h5cmmusa_c \"2-Hydroxy-5-carboxymethylmuconate-Semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2h5cmmusa_c \"2-Hydroxy-5-carboxymethylmuconate-Semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3pg_e \"3-Phospho-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3pg_e \"3-Phospho-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3pg_c \"3-Phospho-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3pg_c \"3-Phospho-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cump_e \"2-3-Cyclic-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cump_e \"2-3-Cyclic-UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3pg_p \"3-Phospho-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3pg_p \"3-Phospho-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ap5a_c \"P1-P5-Bis-5-adenosyl-pentaphosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ap5a_c \"P1-P5-Bis-5-adenosyl-pentaphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cump_p \"2-3-Cyclic-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cump_p \"2-3-Cyclic-UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dttp_c \"dTTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dttp_c \"dTTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hhlipa_c \"heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hhlipa_c \"heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alac__S_c \"S-2-Acetolactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alac__S_c \"S-2-Acetolactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sertrna_c \"L-Seryl-tRNA-Ser\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sertrna_c \"L-Seryl-tRNA-Ser\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_argsuc_c \"N-omega--L-Arginino-succinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_argsuc_c \"N-omega--L-Arginino-succinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhpt_c \"Dihydropteroate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhpt_c \"Dihydropteroate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg2_ST_p \"pg2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_unaga_c \"Undecaprenyl-diphospho-N-acetyl-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_unaga_c \"Undecaprenyl-diphospho-N-acetyl-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaile_c \"tRNA-Ile\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaile_c \"tRNA-Ile\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_but_e \"Butyrate-n-C40\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_but_e \"Butyrate-n-C40\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpLa4fn_c \"uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpLa4fn_c \"uridine-5--diphospho-beta-4-deoxy-4-formamido-L-arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uri_p \"Uridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uri_p \"Uridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu__D_c \"D-Glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu__D_c \"D-Glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl4_c \"Cobalt-precorrin-4\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl4_c \"Cobalt-precorrin-4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uri_c \"Uridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uri_c \"Uridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_but_p \"Butyrate-n-C40\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_but_p \"Butyrate-n-C40\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__L_c \"L-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__L_c \"L-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uri_e \"Uridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uri_e \"Uridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl2_c \"Cobalt-precorrin-2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl2_c \"Cobalt-precorrin-2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn141_p \"cardiolipin-tetratetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn141_p \"cardiolipin-tetratetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_34hpp_c \"3-4-Hydroxyphenyl-pyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_34hpp_c \"3-4-Hydroxyphenyl-pyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5aprbu_c \"5-Amino-6-5-phosphoribitylamino-uracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5aprbu_c \"5-Amino-6-5-phosphoribitylamino-uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ohexACP_c \"3-Oxohexanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ohexACP_c \"3-Oxohexanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacgam_c \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacgam_c \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu2_c \"Cu2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu2_c \"Cu2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcinnm_p \"3-hydroxycinnamic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcinnm_p \"3-hydroxycinnamic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacgam_e \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacgam_e \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu2_e \"Cu2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu2_e \"Cu2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fc1p_c \"L-Fuculose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fc1p_c \"L-Fuculose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cyan_p \"Hydrogen-cyanide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cyan_p \"Hydrogen-cyanide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_q8_c \"Ubiquinone-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_q8_c \"Ubiquinone-8\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu2_p \"Cu2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu2_p \"Cu2\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacgam_p \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacgam_p \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rhcys_c \"S-Ribosyl-L-homocysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rhcys_c \"S-Ribosyl-L-homocysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm3p_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm3p_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tripeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cyan_e \"Hydrogen-cyanide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cyan_e \"Hydrogen-cyanide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_grdp_c \"Geranyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_grdp_c \"Geranyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cyan_c \"Hydrogen-cyanide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cyan_c \"Hydrogen-cyanide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg161_p \"Phosphatidylglycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg161_p \"Phosphatidylglycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dpcoa_c \"Dephospho-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dpcoa_c \"Dephospho-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdp_c \"dTDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdp_c \"dTDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg161_c \"Phosphatidylglycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg161_c \"Phosphatidylglycerol-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_palmACP_c \"Palmitoyl-ACP-n-C160ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_palmACP_c \"Palmitoyl-ACP-n-C160ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ins_p \"Inosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ins_p \"Inosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp7Oag_p \"Undecaprenyl-diphosphate-O-antigene-7x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp7Oag_p \"Undecaprenyl-diphosphate-O-antigene-7x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nicrnt_c \"Nicotinate-D-ribonucleotide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nicrnt_c \"Nicotinate-D-ribonucleotide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcinnm_e \"3-hydroxycinnamic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcinnm_e \"3-hydroxycinnamic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchsx_c \"Salmochelin-SX\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchsx_c \"Salmochelin-SX\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchsx_e \"Salmochelin-SX\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchsx_e \"Salmochelin-SX\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lyx__L_e \"L-Lyxose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lyx__L_e \"L-Lyxose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acon__C_e \"cis-Aconitate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acon__C_e \"cis-Aconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__D_p \"D-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__D_p \"D-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mercppyr_c \"Mercaptopyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mercppyr_c \"Mercaptopyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4L_c \"KDO-2-lipid-IV-A-with-laurate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4L_c \"KDO-2-lipid-IV-A-with-laurate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__D_e \"D-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__D_e \"D-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__D_c \"D-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__D_c \"D-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asntrna_c \"L-Asparaginyl-tRNA-Asn\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asntrna_c \"L-Asparaginyl-tRNA-Asn\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxa_p \"Hexanoate-n-C60\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxa_p \"Hexanoate-n-C60\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpgal_p \"UDPgalactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpgal_p \"UDPgalactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pap_c \"Adenosine-3-5-bisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pap_c \"Adenosine-3-5-bisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ins_c \"Inosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ins_c \"Inosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipidAds_c \"Lipid-A-Disaccharide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipidAds_c \"Lipid-A-Disaccharide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpgal_c \"UDPgalactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpgal_c \"UDPgalactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxa_c \"Hexanoate-n-C60\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxa_c \"Hexanoate-n-C60\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxa_e \"Hexanoate-n-C60\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxa_e \"Hexanoate-n-C60\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpgal_e \"UDPgalactose\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpgal_e \"UDPgalactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acac_p \"Acetoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acac_p \"Acetoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adprib_c \"ADPribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adprib_c \"ADPribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_t3c7mrseACP_c \"trans-3-cis-7-myristoleoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_t3c7mrseACP_c \"trans-3-cis-7-myristoleoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adcobn_c \"Adenosylcobyric-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adcobn_c \"Adenosylcobyric-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acac_e \"Acetoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acac_e \"Acetoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipidA_c \"2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipidA_c \"2-3-2-3-Tetrakis-beta-hydroxymyristoyl-D-glucosaminyl-1-6-beta-D-glucosamine-1-4-bisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acser_c \"O-Acetyl-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acser_c \"O-Acetyl-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg120_p \"Phosphatidylglycerol-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg120_p \"Phosphatidylglycerol-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acser_e \"O-Acetyl-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acser_e \"O-Acetyl-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galct__D_p \"D-Galactarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galct__D_p \"D-Galactarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pep_c \"Phosphoenolpyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pep_c \"Phosphoenolpyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pep_e \"Phosphoenolpyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pep_e \"Phosphoenolpyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg120_c \"Phosphatidylglycerol-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg120_c \"Phosphatidylglycerol-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcpalm9eACP_c \"R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcpalm9eACP_c \"R-3-hydroxy-cis-palm-9-eoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galct__D_e \"D-Galactarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galct__D_e \"D-Galactarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galct__D_c \"D-Galactarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galct__D_c \"D-Galactarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppgpp_c \"Guanosine-3-5-bis-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppgpp_c \"Guanosine-3-5-bis-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnacys_c \"tRNA-Cys\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnacys_c \"tRNA-Cys\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs1_c \"salchs1_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so2_e \"sulfur-dioxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so2_e \"sulfur-dioxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdcoa_c \"Hexadecenoyl-CoA-n-C161CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdcoa_c \"Hexadecenoyl-CoA-n-C161CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malt_p \"Maltose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malt_p \"Maltose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyald_e \"D-Glyceraldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyald_e \"D-Glyceraldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyald_c \"D-Glyceraldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyald_c \"D-Glyceraldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malt_c \"Maltose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malt_c \"Maltose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malt_e \"Maltose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malt_e \"Maltose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyald_p \"D-Glyceraldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyald_p \"D-Glyceraldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cystrna_c \"L-Cysteinyl-tRNA-Cys\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cystrna_c \"L-Cysteinyl-tRNA-Cys\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpg_c \"udcpg_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_taur_e \"Taurine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_taur_e \"Taurine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_peamn_p \"Phenethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_peamn_p \"Phenethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__D_p \"D-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__D_p \"D-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dxyl5p_c \"1-deoxy-D-xylulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dxyl5p_c \"1-deoxy-D-xylulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_s7p_c \"Sedoheptulose-7-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_s7p_c \"Sedoheptulose-7-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_peamn_e \"Phenethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_peamn_e \"Phenethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_taur_p \"Taurine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_taur_p \"Taurine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lys__L_e \"L-Lysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lys__L_e \"L-Lysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2odec11eg3p_p \"2-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2odec11eg3p_p \"2-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__R__L_p \"L-methionine-R-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__R__L_p \"L-methionine-R-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg160_c \"acyl-phosphatidylglycerol-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg160_c \"acyl-phosphatidylglycerol-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_inost_p \"myo-Inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_inost_p \"myo-Inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lys__L_p \"L-Lysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lys__L_p \"L-Lysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_inost_e \"myo-Inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_inost_e \"myo-Inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_inost_c \"myo-Inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_inost_c \"myo-Inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thdp_c \"2-3-4-5-Tetrahydrodipicolinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thdp_c \"2-3-4-5-Tetrahydrodipicolinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdpgalrmnmanabe_c \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdpgalrmnmanabe_c \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abutn_c \"4-Aminobutanal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abutn_c \"4-Aminobutanal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpglcur_e \"UDP-D-glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpglcur_e \"UDP-D-glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpglcur_c \"UDP-D-glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpglcur_c \"UDP-D-glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acanth_c \"N-Acetylanthranilate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acanth_c \"N-Acetylanthranilate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__R_e \"R-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__R_e \"R-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__R_c \"R-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__R_c \"R-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2p4c2me_c \"2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2p4c2me_c \"2-phospho-4-cytidine-5-diphospho-2-C-methyl-D-erythritol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpglcur_p \"UDP-D-glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpglcur_p \"UDP-D-glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe181_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe181_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_progly_e \"L-Prolinylglycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_progly_e \"L-Prolinylglycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dda7p_c \"2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dda7p_c \"2-Dehydro-3-deoxy-D-arabino-heptonate-7-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2mb4p_c \"1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2mb4p_c \"1-hydroxy-2-methyl-2-E-butenyl-4-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_progly_c \"L-Prolinylglycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_progly_c \"L-Prolinylglycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhmp_c \"R-2-3-Dihydroxy-3-methylpentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhmp_c \"R-2-3-Dihydroxy-3-methylpentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdpfuc_c \"GDP-L-fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdpfuc_c \"GDP-L-fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe181_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe181_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phhlipa_c \"phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phhlipa_c \"phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_progly_p \"L-Prolinylglycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_progly_p \"L-Prolinylglycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_for_p \"Formate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_for_p \"Formate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_duri_e \"Deoxyuridine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_duri_e \"Deoxyuridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tmrs2eACP_c \"trans-Tetradec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tmrs2eACP_c \"trans-Tetradec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs_c \"2-3-dihydroxybenzoylserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhbzs_c \"2-3-dihydroxybenzoylserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_duri_c \"Deoxyuridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_duri_c \"Deoxyuridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyrp_e \"Phosphotyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyrp_e \"Phosphotyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_for_e \"Formate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_for_e \"Formate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_for_c \"Formate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_for_c \"Formate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_duri_p \"Deoxyuridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_duri_p \"Deoxyuridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpacgal_p \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpacgal_p \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_airs_c \"Aminoimidazole-riboside\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_airs_c \"Aminoimidazole-riboside\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_airs_e \"Aminoimidazole-riboside\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_airs_e \"Aminoimidazole-riboside\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpacgal_e \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpacgal_e \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmhep7p_c \"D-Glycero-D-manno-heptose-7-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmhep7p_c \"D-Glycero-D-manno-heptose-7-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alatrna_c \"L-Alanyl-tRNA-Ala\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alatrna_c \"L-Alanyl-tRNA-Ala\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_airs_p \"Aminoimidazole-riboside\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_airs_p \"Aminoimidazole-riboside\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cob1nda_c \"Cob-I-yrinate-a-c-diamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cob1nda_c \"Cob-I-yrinate-a-c-diamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nadp_c \"Nicotinamide-adenine-dinucleotide-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nadp_c \"Nicotinamide-adenine-dinucleotide-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uLa4fn_c \"undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uLa4fn_c \"undecaprenyl-phosphate-4-amino-4-formyl-L-arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucarg_c \"N2-Succinyl-L-arginine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucarg_c \"N2-Succinyl-L-arginine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cysi__L_c \"L-Cystine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cysi__L_c \"L-Cystine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgmp_e \"dGMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgmp_e \"dGMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmlz_c \"6-7-Dimethyl-8-1-D-ribityl-lumazine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmlz_c \"6-7-Dimethyl-8-1-D-ribityl-lumazine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgmp_c \"dGMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgmp_c \"dGMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cysi__L_e \"L-Cystine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cysi__L_e \"L-Cystine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc2p_p \"Glycerol-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc2p_p \"Glycerol-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thmpp_c \"Thiamine-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thmpp_c \"Thiamine-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cysi__L_p \"L-Cystine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cysi__L_p \"L-Cystine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhor__S_c \"S-Dihydroorotate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhor__S_c \"S-Dihydroorotate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgmp_p \"dGMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgmp_p \"dGMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_foam_p \"Formamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_foam_p \"Formamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo8p_c \"3-Deoxy-D-manno-octulosonate-8-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo8p_c \"3-Deoxy-D-manno-octulosonate-8-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hom__L_p \"L-Homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hom__L_p \"L-Homoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_f6p_c \"D-Fructose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_f6p_c \"D-Fructose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hom__L_c \"L-Homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hom__L_c \"L-Homoserine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_um4p_c \"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_um4p_c \"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2-6-diaminopimelate-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_foam_c \"Formamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_foam_c \"Formamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_f6p_p \"D-Fructose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_f6p_p \"D-Fructose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_foam_e \"Formamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_foam_e \"Formamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hom__L_e \"L-Homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hom__L_e \"L-Homoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nadh_c \"Nicotinamide-adenine-dinucleotide--reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nadh_c \"Nicotinamide-adenine-dinucleotide--reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocACP_c \"Octanoyl-ACP-n-C80ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocACP_c \"Octanoyl-ACP-n-C80ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mi1p__D_c \"1D-myo-Inositol-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mi1p__D_c \"1D-myo-Inositol-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr140_p \"1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr140_p \"1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaglu_c \"tRNA-Glu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaglu_c \"tRNA-Glu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr140_c \"1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr140_c \"1-2-Diacyl-sn-glycerol-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pant__R_c \"R-Pantoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pant__R_c \"R-Pantoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dopa_e \"Dopamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dopa_e \"Dopamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1ddecg3p_p \"1-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1ddecg3p_p \"1-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oaa_p \"Oxaloacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oaa_p \"Oxaloacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orot_e \"Orotate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orot_e \"Orotate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_toctd2eACP_c \"trans-octadec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_toctd2eACP_c \"trans-octadec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pro__L_c \"L-Proline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pro__L_c \"L-Proline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pro__L_e \"L-Proline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pro__L_e \"L-Proline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orot_c \"Orotate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orot_c \"Orotate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oaa_e \"Oxaloacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oaa_e \"Oxaloacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1ddecg3p_c \"1-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1ddecg3p_c \"1-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dopa_p \"Dopamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dopa_p \"Dopamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oaa_c \"Oxaloacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oaa_c \"Oxaloacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pro__L_p \"L-Proline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pro__L_p \"L-Proline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orot_p \"Orotate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orot_p \"Orotate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ohpb_c \"2-Oxo-3-hydroxy-4-phosphobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ohpb_c \"2-Oxo-3-hydroxy-4-phosphobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arab__L_p \"L-Arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arab__L_p \"L-Arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etoh_p \"Ethanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etoh_p \"Ethanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arab__L_e \"L-Arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arab__L_e \"L-Arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arab__L_c \"L-Arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arab__L_c \"L-Arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe161_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe161_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox_p \"Fe-III-hydroxamate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox_p \"Fe-III-hydroxamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_d5kg_c \"d5kg_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_skm5p_c \"Shikimate-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_skm5p_c \"Shikimate-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp13Oag_p \"Undecaprenyl-diphosphate-O-antigene-13x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp13Oag_p \"Undecaprenyl-diphosphate-O-antigene-13x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acACP_c \"Acetyl-ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acACP_c \"Acetyl-ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyb_e \"Glycine-betaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyb_e \"Glycine-betaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyb_c \"Glycine-betaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyb_c \"Glycine-betaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdddecg_c \"CDP-1-2-didodecanoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdddecg_c \"CDP-1-2-didodecanoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox_e \"Fe-III-hydroxamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox_e \"Fe-III-hydroxamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_citr__L_c \"L-Citrulline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_citr__L_c \"L-Citrulline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyb_p \"Glycine-betaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyb_p \"Glycine-betaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gggagicolipa_c \"glucosyl-glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gggagicolipa_c \"glucosyl-glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe160_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe160_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdodec11eg_c \"CDP-1-2-dioctadec-11-enoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdodec11eg_c \"CDP-1-2-dioctadec-11-enoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_actACP_c \"Acetoacetyl-ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_actACP_c \"Acetoacetyl-ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gicolipa_c \"glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gicolipa_c \"glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_bbtcoa_c \"gamma-butyrobetainyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_bbtcoa_c \"gamma-butyrobetainyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fru_e \"D-Fructose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fru_e \"D-Fructose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3gmp_e \"3-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3gmp_e \"3-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_methf_c \"5-10-Methenyltetrahydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_methf_c \"5-10-Methenyltetrahydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fru_c \"D-Fructose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fru_c \"D-Fructose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_agdpcbi_c \"Adenosine-GDP-cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_agdpcbi_c \"Adenosine-GDP-cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa141_p \"1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa141_p \"1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca4und_p \"enterobacterial-common-antigen-x4-undecaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca4und_p \"enterobacterial-common-antigen-x4-undecaprenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fru_p \"D-Fructose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fru_p \"D-Fructose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3gmp_p \"3-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3gmp_p \"3-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl6a_c \"Cobalt-precorrin-6a\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl6a_c \"Cobalt-precorrin-6a\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ara5p_c \"D-Arabinose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ara5p_c \"D-Arabinose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa141_c \"1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa141_c \"1-2-ditetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cobalt2_e \"Co2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cobalt2_e \"Co2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cobalt2_c \"Co2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cobalt2_c \"Co2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dkdi_c \"dkdi_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pmtcoa_c \"Palmitoyl-CoA-n-C160CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pmtcoa_c \"Palmitoyl-CoA-n-C160CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hodcoa_c \"S-3-Hydroxyoctadecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hodcoa_c \"S-3-Hydroxyoctadecanoyl-CoA\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cobalt2_p \"Co2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cobalt2_p \"Co2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lpp_sp_p \"lpp_sp_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hphhlipa_c \"heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hphhlipa_c \"heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__D_p \"D-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__D_p \"D-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cgly_p \"Cys-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cgly_p \"Cys-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pan4p_c \"Pantetheine-4-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pan4p_c \"Pantetheine-4-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cgly_e \"Cys-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cgly_e \"Cys-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__D_c \"D-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__D_c \"D-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__D_e \"D-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__D_e \"D-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cgly_c \"Cys-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cgly_c \"Cys-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phthr_c \"O-Phospho-4-hydroxy-L-threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phthr_c \"O-Phospho-4-hydroxy-L-threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adcob1nda_c \"Adenosyl-cobyrinate-a-c-diamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adcob1nda_c \"Adenosyl-cobyrinate-a-c-diamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dr1p_c \"2-Deoxy-D-ribose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dr1p_c \"2-Deoxy-D-ribose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tagur_c \"D-Tagaturonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tagur_c \"D-Tagaturonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sbt__D_e \"D-Sorbitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sbt__D_e \"D-Sorbitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl5a_c \"Cobalt-precorrin-5a\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl5a_c \"Cobalt-precorrin-5a\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urea_c \"Urea\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urea_c \"Urea\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pi_p \"Phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pi_p \"Phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdpmann_c \"GDP-D-mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdpmann_c \"GDP-D-mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_protrna_c \"L-Prolyl-tRNA-Pro\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_protrna_c \"L-Prolyl-tRNA-Pro\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein4px4px4p_p \"three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein4px4px4p_p \"three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sbt__D_p \"D-Sorbitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sbt__D_p \"D-Sorbitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pi_c \"Phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pi_c \"Phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pi_e \"Phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pi_e \"Phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg120_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg120_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe161_p \"phosphatidylethanolamine-dihexadec-9enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe161_p \"phosphatidylethanolamine-dihexadec-9enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hcys__L_c \"L-Homocysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hcys__L_c \"L-Homocysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe161_c \"phosphatidylethanolamine-dihexadec-9enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe161_c \"phosphatidylethanolamine-dihexadec-9enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2h3oppan_c \"2-Hydroxy-3-oxopropanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2h3oppan_c \"2-Hydroxy-3-oxopropanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ctp_c \"CTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ctp_c \"CTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe120_c \"phosphatidylethanolamine-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe120_c \"phosphatidylethanolamine-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppg9_c \"Protoporphyrinogen-IX\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppg9_c \"Protoporphyrinogen-IX\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox_c \"Fe-III-hydroxamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox_c \"Fe-III-hydroxamate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe120_p \"phosphatidylethanolamine-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe120_p \"phosphatidylethanolamine-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ru5p__D_c \"D-Ribulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ru5p__D_c \"D-Ribulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3odcoa_c \"3-Oxodecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3odcoa_c \"3-Oxodecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4r5au_c \"4-1-D-Ribitylamino-5-aminouracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4r5au_c \"4-1-D-Ribitylamino-5-aminouracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ru5p__L_c \"L-Ribulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ru5p__L_c \"L-Ribulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2tdec7eg3p_c \"2-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2tdec7eg3p_c \"2-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2tdec7eg3p_p \"2-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2tdec7eg3p_p \"2-tetradec-7-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_34dhpac_p \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_34dhpac_p \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mqn8_c \"Menaquinone-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mqn8_c \"Menaquinone-8\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oc2coa_c \"trans-Oct-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oc2coa_c \"trans-Oct-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_34dhpac_e \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_34dhpac_e \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcb_c \"tricarballylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcb_c \"tricarballylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dann_c \"7-8-Diaminononanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dann_c \"7-8-Diaminononanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcb_e \"tricarballylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcb_e \"tricarballylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thex2eACP_c \"trans-Hex-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thex2eACP_c \"trans-Hex-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tddec2eACP_c \"trans-Dodec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tddec2eACP_c \"trans-Dodec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5drib_c \"5-deoxyribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5drib_c \"5-deoxyribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbasp_c \"N-Carbamoyl-L-aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbasp_c \"N-Carbamoyl-L-aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcb_p \"tricarballylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcb_p \"tricarballylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_seramp_c \"L-seryl-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_seramp_c \"L-seryl-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_N1aspmd_c \"N1-Acetylspermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_N1aspmd_c \"N1-Acetylspermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg161_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg161_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_damp_p \"dAMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_damp_p \"dAMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhnpt_c \"Dihydroneopterin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhnpt_c \"Dihydroneopterin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_r1p_c \"alpha-D-Ribose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_r1p_c \"alpha-D-Ribose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_damp_c \"dAMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_damp_c \"dAMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_damp_e \"dAMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_damp_e \"dAMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glytrna_c \"Glycyl-tRNA-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glytrna_c \"Glycyl-tRNA-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdapDala_p \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdapDala_p \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glc__D_p \"D-Glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glc__D_p \"D-Glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_idp_c \"IDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_idp_c \"IDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lystrna_c \"L-Lysine-tRNA-Lys\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lystrna_c \"L-Lysine-tRNA-Lys\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glc__D_c \"D-Glucose\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glc__D_c \"D-Glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glc__D_e \"D-Glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glc__D_e \"D-Glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg160_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg160_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sulfac_p \"sulfoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sulfac_p \"sulfoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_frdp_c \"Farnesyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_frdp_c \"Farnesyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ocddec5eACP_c \"3-oxo-cis-dodec-5-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ocddec5eACP_c \"3-oxo-cis-dodec-5-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg160_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg160_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sulfac_e \"sulfoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sulfac_e \"sulfoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dh3dgal_c \"2-Dehydro-3-deoxy-D-galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dh3dgal_c \"2-Dehydro-3-deoxy-D-galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_leutrna_c \"L-Leucyl-tRNA-Leu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_leutrna_c \"L-Leucyl-tRNA-Leu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_seln_c \"Selenide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_seln_c \"Selenide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_actp_c \"Acetyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_actp_c \"Acetyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppal_p \"Propanal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppal_p \"Propanal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe2_ST_p \"pe2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppal_c \"Propanal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppal_c \"Propanal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppal_e \"Propanal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppal_e \"Propanal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4ppan_c \"D-4-Phosphopantothenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4ppan_c \"D-4-Phosphopantothenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxGfe_p \"Ferrioxamine-G-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxGfe_p \"Ferrioxamine-G-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xtsn_c \"Xanthosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xtsn_c \"Xanthosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppap_c \"Propanoyl-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppap_c \"Propanoyl-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ocmrs7eACP_c \"3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ocmrs7eACP_c \"3-oxo-cis-myristol-7-eoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_db4p_c \"3-4-dihydroxy-2-butanone-4-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_db4p_c \"3-4-dihydroxy-2-butanone-4-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dhguln_c \"2-Dehydro-L-gulonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dhguln_c \"2-Dehydro-L-gulonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg141_c \"Phosphatidylglycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg141_c \"Phosphatidylglycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__L_e \"L-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__L_e \"L-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fpram_c \"2-Formamido-N1-5-phospho-D-ribosyl-acetamidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fpram_c \"2-Formamido-N1-5-phospho-D-ribosyl-acetamidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5px3p_p \"two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5px3p_p \"two-disacharide-linked-murein-units-pentapeptide-corsslinked-tripeptide-A2pm-A2pm--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_stcoa_c \"Stearoyl-CoA-n-C180CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_stcoa_c \"Stearoyl-CoA-n-C180CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp20Oag_p \"Undecaprenyl-diphosphate-O-antigene-20x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp20Oag_p \"Undecaprenyl-diphosphate-O-antigene-20x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe120_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe120_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg141_p \"Phosphatidylglycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg141_p \"Phosphatidylglycerol-ditetradec-7-enoyl-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__L_p \"L-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__L_p \"L-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etha_e \"Ethanolamine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etha_e \"Ethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxGfe_e \"Ferrioxamine-G-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxGfe_e \"Ferrioxamine-G-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca3und_p \"enterobacterial-common-antigen-x3-undecaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca3und_p \"enterobacterial-common-antigen-x3-undecaprenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam_e \"D-Glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam_e \"D-Glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1hdecg3p_c \"1-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1hdecg3p_c \"1-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etha_c \"Ethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etha_c \"Ethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g6p_p \"D-Glucose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g6p_p \"D-Glucose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_icit_c \"Isocitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_icit_c \"Isocitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_icit_e \"Isocitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_icit_e \"Isocitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam_p \"D-Glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam_p \"D-Glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prbamp_c \"1-5-Phosphoribosyl-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_prbamp_c \"1-5-Phosphoribosyl-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etha_p \"Ethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etha_p \"Ethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg180_p \"Phosphatidylglycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg180_p \"Phosphatidylglycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_icit_p \"Isocitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_icit_p \"Isocitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g6p_c \"D-Glucose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g6p_c \"D-Glucose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g6p_e \"D-Glucose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g6p_e \"D-Glucose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gagicolipa_c \"galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gagicolipa_c \"galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxGfe_c \"Ferrioxamine-G-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxGfe_c \"Ferrioxamine-G-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g1p_e \"D-Glucose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g1p_e \"D-Glucose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g1p_c \"D-Glucose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g1p_c \"D-Glucose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__L_c \"L-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__L_c \"L-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ACP_c \"acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ACP_c \"acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__L_e \"L-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__L_e \"L-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g1p_p \"D-Glucose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g1p_p \"D-Glucose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__L_p \"L-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__L_p \"L-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aso3_p \"arsenite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aso3_p \"arsenite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ommbl_c \"2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ommbl_c \"2-Octaprenyl-3-methyl-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein4px4p4p_p \"three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein4px4p4p_p \"three-disacharide-linked-murein-units-tetrapeptide-crosslinked-tetrapeptide-A2pm-D-ala--one-uncrosslinked-tetrapaptide--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tpalm2eACP_c \"trans-Hexadec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tpalm2eACP_c \"trans-Hexadec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aso3_e \"arsenite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aso3_e \"arsenite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5px4px4p_p \"three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5px4px4p_p \"three-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_btcoa_c \"Butanoyl-CoA\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_btcoa_c \"Butanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaLglu_c \"L-alanine-L-glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaLglu_c \"L-alanine-L-glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23ccmp_e \"2-3-Cyclic-CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23ccmp_e \"2-3-Cyclic-CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_argtrna_c \"L-Arginyl-tRNA-Arg\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_argtrna_c \"L-Arginyl-tRNA-Arg\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23ccmp_p \"2-3-Cyclic-CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23ccmp_p \"2-3-Cyclic-CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_occoa_c \"Octanoyl-CoA-n-C80CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_occoa_c \"Octanoyl-CoA-n-C80CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmp_c \"GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmp_c \"GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pacald_p \"Phenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pacald_p \"Phenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmp_e \"GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmp_e \"GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmp_p \"GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmp_p \"GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pacald_e \"Phenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pacald_e \"Phenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdp4aaddg_c \"dTDP-4-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdp4aaddg_c \"dTDP-4-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pacald_c \"Phenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pacald_c \"Phenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_btn_c \"Biotin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_btn_c \"Biotin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4iz5pp_c \"4-Imidazolone-5-propanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4iz5pp_c \"4-Imidazolone-5-propanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_n2o_p \"Nitrous-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_n2o_p \"Nitrous-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4c2me_c \"4-cytidine-5-diphospho-2-C-methyl-D-erythritol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4c2me_c \"4-cytidine-5-diphospho-2-C-methyl-D-erythritol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_n2o_c \"Nitrous-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_n2o_c \"Nitrous-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_n2o_e \"Nitrous-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_n2o_e \"Nitrous-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tdec2eACP_c \"trans-Dec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tdec2eACP_c \"trans-Dec-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uamr_c \"UDP-N-acetylmuramate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uamr_c \"UDP-N-acetylmuramate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_24dhhed_c \"24dhhed_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_air_c \"5-amino-1-5-phospho-D-ribosyl-imidazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_air_c \"5-amino-1-5-phospho-D-ribosyl-imidazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_athr__L_c \"L-Allo-threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_athr__L_c \"L-Allo-threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_Pald_c \"Phosphonoacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_Pald_c \"Phosphonoacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phe__L_e \"L-Phenylalanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phe__L_e \"L-Phenylalanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ca2_e \"Calcium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ca2_e \"Calcium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyr__L_p \"L-Tyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyr__L_p \"L-Tyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ca2_c \"Calcium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ca2_c \"Calcium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbcox_p \"protein-disulfide-isomerase-II-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbcox_p \"protein-disulfide-isomerase-II-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phe__L_c \"L-Phenylalanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phe__L_c \"L-Phenylalanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe140_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe140_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fmnh2_c \"Reduced-FMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fmnh2_c \"Reduced-FMN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyr__L_e \"L-Tyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyr__L_e \"L-Tyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phe__L_p \"L-Phenylalanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phe__L_p \"L-Phenylalanine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5mdr1p_c \"5-Methylthio-5-deoxy-D-ribose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5mdr1p_c \"5-Methylthio-5-deoxy-D-ribose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ca2_p \"Calcium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ca2_p \"Calcium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyr__L_c \"L-Tyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyr__L_c \"L-Tyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe140_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe140_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2hdecg3p_c \"2-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2hdecg3p_c \"2-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tym_e \"Tyramine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tym_e \"Tyramine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ahdt_c \"2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ahdt_c \"2-Amino-4-hydroxy-6-erythro-1-2-3-trihydroxypropyl-dihydropteridine-triphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein4p3p_p \"two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein4p3p_p \"two-linked-disacharide-tetrapeptide-and-tripeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ohdcoa_c \"3-Oxohexadecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ohdcoa_c \"3-Oxohexadecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_f6p_e \"D-Fructose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_f6p_e \"D-Fructose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2hdecg3p_p \"2-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2hdecg3p_p \"2-hexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tym_p \"Tyramine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tym_p \"Tyramine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pser__L_c \"O-Phospho-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pser__L_c \"O-Phospho-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pser__L_e \"O-Phospho-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pser__L_e \"O-Phospho-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ethso3_e \"ethanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ethso3_e \"ethanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trp__L_p \"L-Tryptophan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trp__L_p \"L-Tryptophan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam1p_p \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam1p_p \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pser__L_p \"O-Phospho-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pser__L_p \"O-Phospho-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trp__L_e \"L-Tryptophan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trp__L_e \"L-Tryptophan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam1p_e \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam1p_e \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam1p_c \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam1p_c \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trp__L_c \"L-Tryptophan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trp__L_c \"L-Tryptophan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ethso3_p \"ethanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ethso3_p \"ethanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rmn_c \"L-Rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rmn_c \"L-Rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pe_e \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pe_e \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pg_p \"Glycerophosphoglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pg_p \"Glycerophosphoglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dc2coa_c \"trans-Dec-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dc2coa_c \"trans-Dec-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rmn_e \"L-Rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rmn_e \"L-Rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pe_c \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pe_c \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp161_p \"Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp161_p \"Phosphatidylglycerophosphate-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn160_p \"cardiolipin-tetrahexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn160_p \"cardiolipin-tetrahexadecanoyl-n-C160\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal1p_p \"N-Acetyl-D-galactosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal1p_p \"N-Acetyl-D-galactosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xyl__D_p \"D-Xylose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xyl__D_p \"D-Xylose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pg_c \"Glycerophosphoglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pg_c \"Glycerophosphoglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rmn_p \"L-Rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rmn_p \"L-Rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pe_p \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pe_p \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pg_e \"Glycerophosphoglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pg_e \"Glycerophosphoglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xyl__D_e \"D-Xylose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xyl__D_e \"D-Xylose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xyl__D_c \"D-Xylose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xyl__D_c \"D-Xylose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal1p_e \"N-Acetyl-D-galactosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal1p_e \"N-Acetyl-D-galactosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhf_c \"7-8-Dihydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhf_c \"7-8-Dihydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pc_p \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pc_p \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orn_p \"Ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orn_p \"Ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alltn_p \"Allantoin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alltn_p \"Allantoin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp120_c \"Phosphatidylglycerophosphate-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp120_c \"Phosphatidylglycerophosphate-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orn_e \"Ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orn_e \"Ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pc_e \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pc_e \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orn_c \"Ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orn_c \"Ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amp_c \"AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amp_c \"AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alltn_e \"Allantoin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alltn_e \"Allantoin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdcaACP_c \"Octadecanoyl-ACP-n-C180ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdcaACP_c \"Octadecanoyl-ACP-n-C180ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp120_p \"Phosphatidylglycerophosphate-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp120_p \"Phosphatidylglycerophosphate-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alltn_c \"Allantoin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alltn_c \"Allantoin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alltt_c \"Allantoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alltt_c \"Allantoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcyt_p \"Deoxycytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcyt_p \"Deoxycytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aps_c \"Adenosine-5-phosphosulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aps_c \"Adenosine-5-phosphosulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mnl_e \"D-Mannitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mnl_e \"D-Mannitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23camp_p \"2-3-Cyclic-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23camp_p \"2-3-Cyclic-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcyt_c \"Deoxycytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcyt_c \"Deoxycytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcyt_e \"Deoxycytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcyt_e \"Deoxycytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23camp_e \"2-3-Cyclic-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23camp_e \"2-3-Cyclic-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mnl_p \"D-Mannitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mnl_p \"D-Mannitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rnam_p \"rnam_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ap4a_c \"P1-P4-Bis-5-adenosyl-tetraphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ap4a_c \"P1-P4-Bis-5-adenosyl-tetraphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rnam_c \"rnam_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rnam_e \"rnam_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so3_c \"Sulfite\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so3_c \"Sulfite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so3_e \"Sulfite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so3_e \"Sulfite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dha_e \"Dihydroxyacetone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dha_e \"Dihydroxyacetone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dha_c \"Dihydroxyacetone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dha_c \"Dihydroxyacetone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_peptido_ST_p \"peptido_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so3_p \"Sulfite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so3_p \"Sulfite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3oddcoa_c \"3-Oxododecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3oddcoa_c \"3-Oxododecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dha_p \"Dihydroxyacetone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dha_p \"Dihydroxyacetone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dkmpp_c \"2-3-diketo-5-methylthio-1-phosphopentane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dkmpp_c \"2-3-diketo-5-methylthio-1-phosphopentane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyrp_p \"Phosphotyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyrp_p \"Phosphotyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fald_e \"Formaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fald_e \"Formaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fald_c \"Formaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fald_c \"Formaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nac_p \"Nicotinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nac_p \"Nicotinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein_lpp_p \"murein_lpp_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__D_c \"D-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__D_c \"D-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fald_p \"Formaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fald_p \"Formaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__D_e \"D-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__D_e \"D-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man6p_p \"D-Mannose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man6p_p \"D-Mannose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_Nmtrp_c \"N-Methyltryptophan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_Nmtrp_c \"N-Methyltryptophan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnapro_c \"tRNA-Pro\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnapro_c \"tRNA-Pro\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm_e \"Ferrichrome\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm_e \"Ferrichrome\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm_c \"Ferrichrome\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm_c \"Ferrichrome\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man6p_c \"D-Mannose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man6p_c \"D-Mannose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man6p_e \"D-Mannose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man6p_e \"D-Mannose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdptp_c \"Guanosine-3-diphosphate-5-triphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdptp_c \"Guanosine-3-diphosphate-5-triphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fad_c \"Flavin-adenine-dinucleotide-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fad_c \"Flavin-adenine-dinucleotide-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm_p \"Ferrichrome\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm_p \"Ferrichrome\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr160_p \"1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr160_p \"1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ni2_e \"nickel\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ni2_e \"nickel\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ni2_c \"nickel\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ni2_c \"nickel\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr160_c \"1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr160_c \"1-2-Diacyl-sn-glycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ni2_p \"nickel\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ni2_p \"nickel\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so4_p \"Sulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so4_p \"Sulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urea_p \"Urea\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urea_p \"Urea\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ckdo_c \"CMP-3-deoxy-D-manno-octulosonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ckdo_c \"CMP-3-deoxy-D-manno-octulosonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mn2_c \"Mn2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mn2_c \"Mn2\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mn2_e \"Mn2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mn2_e \"Mn2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal_e \"N-Acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal_e \"N-Acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so4_c \"Sulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so4_c \"Sulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs2_c \"23dhbzs2_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hmbil_c \"Hydroxymethylbilane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hmbil_c \"Hydroxymethylbilane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so4_e \"Sulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so4_e \"Sulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5p5p5p_p \"three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5p5p5p_p \"three-linked-disacharide-pentapeptide-murein-units-uncrosslinked-middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mn2_p \"Mn2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mn2_p \"Mn2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal_p \"N-Acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal_p \"N-Acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glucys_c \"gamma-L-Glutamyl-L-cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glucys_c \"gamma-L-Glutamyl-L-cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hdcoa_c \"S-3-Hydroxydecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hdcoa_c \"S-3-Hydroxydecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urea_e \"Urea\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urea_e \"Urea\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4mhetz_c \"4-Methyl-5-2-hydroxyethyl-thiazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4mhetz_c \"4-Methyl-5-2-hydroxyethyl-thiazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octeACP_c \"cis-octadec-11-enoyl-acyl-carrier-protein-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octeACP_c \"cis-octadec-11-enoyl-acyl-carrier-protein-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdp4dh36ddglc_c \"CDP-4-dehydro-3-6-dideoxy-D-glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdp4dh36ddglc_c \"CDP-4-dehydro-3-6-dideoxy-D-glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4mop_c \"4-Methyl-2-oxopentanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4mop_c \"4-Methyl-2-oxopentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lpp_p \"lipoprotein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lpp_p \"lipoprotein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sarcs_c \"Sarcosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sarcs_c \"Sarcosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fcl__L_c \"L-fuculose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fcl__L_c \"L-fuculose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu5p_c \"L-Glutamate-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu5p_c \"L-Glutamate-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2_c \"O2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2_c \"O2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_utp_c \"UTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_utp_c \"UTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5dh4dglc_c \"5-Dehydro-4-deoxy-D-glucarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5dh4dglc_c \"5-Dehydro-4-deoxy-D-glucarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2_e \"O2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2_e \"O2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn2_ST_p \"clpn2_ST_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3dhsk_c \"3-Dehydroshikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3dhsk_c \"3-Dehydroshikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2_p \"O2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2_p \"O2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trptrna_c \"L-Tryptophanyl-tRNA-Trp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trptrna_c \"L-Tryptophanyl-tRNA-Trp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acolipa_p \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acolipa_p \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_btnso_c \"d-biotin-d-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_btnso_c \"d-biotin-d-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddecg3p_p \"2-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddecg3p_p \"2-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acolipa_e \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acolipa_e \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_u3aga_c \"UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_u3aga_c \"UDP-3-O-3-hydroxytetradecanoyl-N-acetylglucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddecg3p_c \"2-dodecanoyl-sn-glycerol-3-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddecg3p_c \"2-dodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_unagamuf_c \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_unagamuf_c \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_unagamuf_p \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_unagamuf_p \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4-6-dideoxy-D-galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp9Oag_p \"Undecaprenyl-diphosphate-O-antigene-9x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp9Oag_p \"Undecaprenyl-diphosphate-O-antigene-9x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdap_p \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdap_p \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pran_c \"N-5-Phospho-D-ribosyl-anthranilate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pran_c \"N-5-Phospho-D-ribosyl-anthranilate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdap_e \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdap_e \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galt1p_c \"Galactitol-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galt1p_c \"Galactitol-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdap_c \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdap_c \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o_c \"H2O\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o_c \"H2O\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hg2_p \"Hg2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hg2_p \"Hg2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o_e \"H2O\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o_e \"H2O\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnasecys_c \"tRNA-SeCys\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnasecys_c \"tRNA-SeCys\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe181_p \"phosphatidylethanolamine-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe181_p \"phosphatidylethanolamine-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nac_e \"Nicotinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nac_e \"Nicotinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nac_c \"Nicotinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nac_c \"Nicotinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hg2_c \"Hg2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hg2_c \"Hg2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o_p \"H2O\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o_p \"H2O\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hg2_e \"Hg2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hg2_e \"Hg2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pe181_c \"phosphatidylethanolamine-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pe181_c \"phosphatidylethanolamine-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prlp_c \"5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_prlp_c \"5-5-phospho-1-deoxyribulos-1-ylamino-methylideneamino-1-5-phosphoribosyl-imidazole-4-carboxamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps161_c \"phosphatidylserine-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps161_c \"phosphatidylserine-dihexadec-9-enoyl-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp181_p \"Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp181_p \"Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malttr_p \"Maltotriose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malttr_p \"Maltotriose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pgp181_c \"Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pgp181_c \"Phosphatidylglycerophosphate-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malttr_e \"Maltotriose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malttr_e \"Maltotriose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbdrd_c \"fused-thioldisulfide-interchange-protein-reduced\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbdrd_c \"fused-thioldisulfide-interchange-protein-reduced\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malttr_c \"Maltotriose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malttr_c \"Maltotriose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2pg_e \"D-Glycerate-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2pg_e \"D-Glycerate-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr180_p \"1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr180_p \"1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2pg_c \"D-Glycerate-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2pg_c \"D-Glycerate-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hhcoa_c \"S-3-Hydroxyhexanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hhcoa_c \"S-3-Hydroxyhexanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ggagicolipa_c \"glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ggagicolipa_c \"glucosyl-galactosyl-glucosyl-inner-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdcea_p \"tetradecenoate-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdcea_p \"tetradecenoate-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uagmda_c \"Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uagmda_c \"Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2-6-diaminopimeloyl-D-alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr180_c \"1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr180_c \"1-2-Diacyl-sn-glycerol-dioctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2pg_p \"D-Glycerate-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2pg_p \"D-Glycerate-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glycogen_c \"glycogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glycogen_c \"glycogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdcea_e \"tetradecenoate-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdcea_e \"tetradecenoate-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdcea_c \"tetradecenoate-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdcea_c \"tetradecenoate-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc3p_c \"Glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc3p_c \"Glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc3p_e \"Glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc3p_e \"Glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thrp_p \"L-Threonine-O-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thrp_p \"L-Threonine-O-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4mpetz_c \"4-Methyl-5-2-phosphoethyl-thiazole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4mpetz_c \"4-Methyl-5-2-phosphoethyl-thiazole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_succoa_c \"Succinyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_succoa_c \"Succinyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddg6p_c \"2-Dehydro-3-deoxy-D-gluconate-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddg6p_c \"2-Dehydro-3-deoxy-D-gluconate-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdtdec7eg_c \"CDP-1-2-ditetradec-7-enoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdtdec7eg_c \"CDP-1-2-ditetradec-7-enoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thrp_e \"L-Threonine-O-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thrp_e \"L-Threonine-O-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc3p_p \"Glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc3p_p \"Glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thrp_c \"L-Threonine-O-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thrp_c \"L-Threonine-O-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_skm_c \"Shikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_skm_c \"Shikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1pyr5c_c \"1-Pyrroline-5-carboxylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1pyr5c_c \"1-Pyrroline-5-carboxylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_10fthf_c \"10-Formyltetrahydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_10fthf_c \"10-Formyltetrahydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_idon__L_c \"L-Idonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_idon__L_c \"L-Idonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dca_p \"Decanoate-n-C100\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dca_p \"Decanoate-n-C100\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_idon__L_e \"L-Idonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_idon__L_e \"L-Idonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xu5p__D_c \"D-Xylulose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xu5p__D_c \"D-Xylulose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ooctACP_c \"3-Oxooctanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ooctACP_c \"3-Oxooctanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sbt6p_c \"D-Sorbitol-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sbt6p_c \"D-Sorbitol-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dca_e \"Decanoate-n-C100\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dca_e \"Decanoate-n-C100\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_idon__L_p \"L-Idonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_idon__L_p \"L-Idonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dca_c \"Decanoate-n-C100\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dca_c \"Decanoate-n-C100\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg140_c \"acyl-phosphatidylglycerol-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg140_c \"acyl-phosphatidylglycerol-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ribflv_c \"Riboflavin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ribflv_c \"Riboflavin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rbflvrd_c \"Reduced-riboflavin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rbflvrd_c \"Reduced-riboflavin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal__bD_p \"beta-D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal__bD_p \"beta-D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gbbtn_e \"gamma-butyrobetaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gbbtn_e \"gamma-butyrobetaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_t3c9palmeACP_c \"trans-3-cis-9-palmitoleoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_t3c9palmeACP_c \"trans-3-cis-9-palmitoleoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feenter_p \"Fe-enterobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feenter_p \"Fe-enterobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feenter_e \"Fe-enterobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feenter_e \"Fe-enterobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feenter_c \"Fe-enterobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feenter_c \"Fe-enterobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gbbtn_p \"gamma-butyrobetaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gbbtn_p \"gamma-butyrobetaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdprmn_c \"dTDP-L-rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdprmn_c \"dTDP-L-rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_25aics_c \"S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_25aics_c \"S-2-5-Amino-1-5-phospho-D-ribosyl-imidazole-4-carboxamidosuccinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kphphhlipa_c \"kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kphphhlipa_c \"kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp14Oag_p \"Undecaprenyl-diphosphate-O-antigene-14x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp14Oag_p \"Undecaprenyl-diphosphate-O-antigene-14x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uaccg_c \"UDP-N-acetyl-3-O-1-carboxyvinyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uaccg_c \"UDP-N-acetyl-3-O-1-carboxyvinyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2s_e \"Hydrogen-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2s_e \"Hydrogen-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4_p \"KDO-2-lipid-IV-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4_p \"KDO-2-lipid-IV-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2s_c \"Hydrogen-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2s_c \"Hydrogen-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn180_p \"cardiolipin-tetraoctadecanoyl-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn180_p \"cardiolipin-tetraoctadecanoyl-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4_c \"KDO-2-lipid-IV-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4_c \"KDO-2-lipid-IV-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2s_p \"Hydrogen-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2s_p \"Hydrogen-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4_e \"KDO-2-lipid-IV-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4_e \"KDO-2-lipid-IV-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu_e \"Cu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu_e \"Cu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_scl_c \"sirohydrochlorin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_scl_c \"sirohydrochlorin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu_c \"Cu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu_c \"Cu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdp4addg_c \"dTDP-4-amino-4-6-dideoxy-D-galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdp4addg_c \"dTDP-4-amino-4-6-dideoxy-D-galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lgt__S_c \"R-S-Lactoylglutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lgt__S_c \"R-S-Lactoylglutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asptrna_c \"L-Aspartyl-tRNA-Asp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asptrna_c \"L-Aspartyl-tRNA-Asp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu_p \"Cu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu_p \"Cu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_myrsACP_c \"Myristoyl-ACP-n-C140ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_myrsACP_c \"Myristoyl-ACP-n-C140ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdpdtdecg_c \"CDP-1-2-ditetradecanoylglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdpdtdecg_c \"CDP-1-2-ditetradecanoylglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxBfe_p \"Ferrioxamine-B-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxBfe_p \"Ferrioxamine-B-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mana_c \"D-Mannonate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mana_c \"D-Mannonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_manglyc_e \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_manglyc_e \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hocoa_c \"S-3-Hydroxyoctanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hocoa_c \"S-3-Hydroxyoctanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps140_c \"phosphatidylserine-ditetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps140_c \"phosphatidylserine-ditetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxBfe_e \"Ferrioxamine-B-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxBfe_e \"Ferrioxamine-B-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_s_c \"Sulfur\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_s_c \"Sulfur\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thf_c \"5-6-7-8-Tetrahydrofolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thf_c \"5-6-7-8-Tetrahydrofolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxBfe_c \"Ferrioxamine-B-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxBfe_c \"Ferrioxamine-B-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhm_c \"1-6-anhydrous-N-Acetylmuramate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhm_c \"1-6-anhydrous-N-Acetylmuramate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ctbtcoa_c \"crotonobetainyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ctbtcoa_c \"crotonobetainyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_manglyc_p \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_manglyc_p \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xtsn_p \"Xanthosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xtsn_p \"Xanthosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg181_c \"acyl-phosphatidylglycerol-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg181_c \"acyl-phosphatidylglycerol-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hddcoa_c \"S-3-Hydroxydodecanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hddcoa_c \"S-3-Hydroxydodecanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam__un_c \"ferroxamine-minus-Fe-3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam__un_c \"ferroxamine-minus-Fe-3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3haACP_c \"3R-3-Hydroxyacyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3haACP_c \"3R-3-Hydroxyacyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmum_e \"N-Acetylmuramate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmum_e \"N-Acetylmuramate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppn_c \"Phenylpropanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppn_c \"Phenylpropanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppn_e \"Phenylpropanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppn_e \"Phenylpropanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dump_e \"dUMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dump_e \"dUMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppn_p \"Phenylpropanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppn_p \"Phenylpropanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdeACP_c \"cis-hexadec-9-enoyl-acyl-carrier-protein-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdeACP_c \"cis-hexadec-9-enoyl-acyl-carrier-protein-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dxyl_e \"dxyl_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dxyl_c \"1-deoxy-D-xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dxyl_c \"1-deoxy-D-xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sl26da_c \"N-Succinyl-LL-2-6-diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sl26da_c \"N-Succinyl-LL-2-6-diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dxyl_p \"dxyl_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thym_c \"Thymine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thym_c \"Thymine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam_c \"N-Acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam_c \"N-Acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmanap_c \"N-Acetyl-D-mannosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmanap_c \"N-Acetyl-D-mannosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dimp_p \"dIMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dimp_p \"dIMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ichor_c \"Isochorismate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ichor_c \"Isochorismate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no_p \"Nitric-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no_p \"Nitric-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcmrs7eACP_c \"R-3-hydroxy-cis-myristol-7-eoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcmrs7eACP_c \"R-3-hydroxy-cis-myristol-7-eoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxG_c \"Ferrioxamine-G\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxG_c \"Ferrioxamine-G\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxG_e \"Ferrioxamine-G\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxG_e \"Ferrioxamine-G\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rib__D_p \"D-Ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rib__D_p \"D-Ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no_e \"Nitric-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no_e \"Nitric-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dimp_c \"dIMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dimp_c \"dIMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dimp_e \"dIMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dimp_e \"dIMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no_c \"Nitric-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no_c \"Nitric-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxG_p \"Ferrioxamine-G\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxG_p \"Ferrioxamine-G\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rib__D_e \"D-Ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rib__D_e \"D-Ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rib__D_c \"D-Ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rib__D_c \"D-Ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgdp_c \"dGDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgdp_c \"dGDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sertrna__sec___c \"L-Seryl-tRNA-Sec\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sertrna__sec___c \"L-Seryl-tRNA-Sec\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnamet_c \"tRNA-Met\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnamet_c \"tRNA-Met\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbip_c \"Adenosyl-cobinamide-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbip_c \"Adenosyl-cobinamide-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thym_p \"Thymine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thym_p \"Thymine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2oph_c \"2-Octaprenylphenol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2oph_c \"2-Octaprenylphenol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thm_c \"Thiamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thm_c \"Thiamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpdp_p \"Undecaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcpdp_p \"Undecaprenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thm_e \"Thiamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thm_e \"Thiamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe2_c \"Fe2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe2_c \"Fe2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnahis_c \"tRNA-His\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnahis_c \"tRNA-His\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe2_e \"Fe2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe2_e \"Fe2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpdp_c \"Undecaprenyl-diphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcpdp_c \"Undecaprenyl-diphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thm_p \"Thiamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thm_p \"Thiamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_unagamu_c \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_unagamu_c \"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe2_p \"Fe2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe2_p \"Fe2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo5_c \"udcpo5_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tet_e \"Tetrathionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tet_e \"Tetrathionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr120_c \"1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr120_c \"1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo5_p \"udcpo5_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp5Oag_p \"Undecaprenyl-diphosphate-O-antigene-5x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp5Oag_p \"Undecaprenyl-diphosphate-O-antigene-5x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12dgr120_p \"1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12dgr120_p \"1-2-Diacyl-sn-glycerol-didodecanoyl-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_leu__L_c \"L-Leucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_leu__L_c \"L-Leucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_leu__L_e \"L-Leucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_leu__L_e \"L-Leucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2odec11eg3p_c \"2-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2odec11eg3p_c \"2-octadec-11-enoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg181_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg181_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbl_c \"Adenosylcobalamin\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbl_c \"Adenosylcobalamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbl_e \"Adenosylcobalamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbl_e \"Adenosylcobalamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_leu__L_p \"L-Leucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_leu__L_p \"L-Leucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg181_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg181_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbl_p \"Adenosylcobalamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbl_p \"Adenosylcobalamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgsn_c \"Deoxyguanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgsn_c \"Deoxyguanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppbng_c \"Porphobilinogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppbng_c \"Porphobilinogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glntrna_c \"L-Glutaminyl-tRNA-Gln\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glntrna_c \"L-Glutaminyl-tRNA-Gln\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgsn_e \"Deoxyguanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgsn_e \"Deoxyguanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddca_c \"Dodecanoate-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddca_c \"Dodecanoate-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddca_e \"Dodecanoate-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddca_e \"Dodecanoate-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sheme_c \"Siroheme\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sheme_c \"Siroheme\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgsn_p \"Deoxyguanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgsn_p \"Deoxyguanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddca_p \"Dodecanoate-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddca_p \"Dodecanoate-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dad__2_e \"Deoxyadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dad__2_e \"Deoxyadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_histd_c \"L-Histidinol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_histd_c \"L-Histidinol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3p_c \"Glyceraldehyde-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3p_c \"Glyceraldehyde-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_skm_p \"Shikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_skm_p \"Shikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddglcn_c \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddglcn_c \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddglcn_e \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddglcn_e \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hqn_c \"Hydroquinone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hqn_c \"Hydroquinone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe180_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe180_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddglcn_p \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddglcn_p \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyceryl_prolpp_c \"glyceryl_prolpp_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thymd_e \"Thymidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thymd_e \"Thymidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thymd_c \"Thymidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thymd_c \"Thymidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_grxox_c \"glutaredoxin-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_grxox_c \"glutaredoxin-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thymd_p \"Thymidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thymd_p \"Thymidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpac_p \"4-Hydroxyphenylacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpac_p \"4-Hydroxyphenylacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glutrna_c \"L-Glutamyl-tRNA-Glu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glutrna_c \"L-Glutamyl-tRNA-Glu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdpgalrmnman_c \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdpgalrmnman_c \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpac_c \"4-Hydroxyphenylacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpac_c \"4-Hydroxyphenylacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udp_c \"UDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udp_c \"UDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpac_e \"4-Hydroxyphenylacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpac_e \"4-Hydroxyphenylacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_butACP_c \"Butyryl-ACP-n-C40ACP\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_butACP_c \"Butyryl-ACP-n-C40ACP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2fe_p \"salchs2fe_p\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fgam_c \"N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fgam_c \"N2-Formyl-N1-5-phospho-D-ribosyl-glycinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2fe_e \"salchs2fe_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2fe_c \"salchs2fe_c\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malthx_e \"Maltohexaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malthx_e \"Maltohexaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malthx_c \"Maltohexaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malthx_c \"Maltohexaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa160_p \"1-2-dihexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa160_p \"1-2-dihexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_quln_c \"Quinolinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_quln_c \"Quinolinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malthx_p \"Maltohexaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malthx_p \"Maltohexaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa160_c \"1-2-dihexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa160_c \"1-2-dihexadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg180_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg180_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp10Oag_p \"Undecaprenyl-diphosphate-O-antigene-10x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp10Oag_p \"Undecaprenyl-diphosphate-O-antigene-10x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__S__L_p \"L-Methionine-Sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__S__L_p \"L-Methionine-Sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam__un_p \"ferroxamine-minus-Fe-3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam__un_p \"ferroxamine-minus-Fe-3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orot5p_c \"Orotidine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orot5p_c \"Orotidine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein4px4p_p \"two-disacharide-linked-murein-units-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein4px4p_p \"two-disacharide-linked-murein-units-tetrapeptide-corsslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ssaltpp_c \"Succinate-semialdehyde-thiamin-diphosphate-anion\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ssaltpp_c \"Succinate-semialdehyde-thiamin-diphosphate-anion\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__S__L_c \"L-Methionine-Sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__S__L_c \"L-Methionine-Sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam__un_e \"ferroxamine-minus-Fe-3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam__un_e \"ferroxamine-minus-Fe-3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn_p \"coprogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn_p \"coprogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__S__L_e \"L-Methionine-Sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__S__L_e \"L-Methionine-Sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_but2eACP_c \"But-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_but2eACP_c \"But-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tdcoa_c \"Tetradecanoyl-CoA-n-C140CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tdcoa_c \"Tetradecanoyl-CoA-n-C140CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam_e \"N-Acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam_e \"N-Acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_q8h2_c \"Ubiquinol-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_q8h2_c \"Ubiquinol-8\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpe141_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpe141_p \"1-Acyl-sn-glycero-3-phosphoethanolamine-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_bglycogen_c \"branching-glycogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_bglycogen_c \"branching-glycogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcdp_c \"dCDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcdp_c \"dCDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaphe_c \"tRNA-Phe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaphe_c \"tRNA-Phe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhdp_c \"2-3-Dihydrodipicolinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dhdp_c \"2-3-Dihydrodipicolinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__L_e \"L-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__L_e \"L-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2mcit_c \"2-Methylcitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2mcit_c \"2-Methylcitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gbbtn_c \"gamma-butyrobetaine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gbbtn_c \"gamma-butyrobetaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__L_p \"L-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__L_p \"L-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dad__2_p \"Deoxyadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dad__2_p \"Deoxyadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppcoa_c \"Propanoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppcoa_c \"Propanoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox__un_p \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox__un_p \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_6pgl_c \"6-phospho-D-glucono-1-5-lactone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_6pgl_c \"6-phospho-D-glucono-1-5-lactone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gly_p \"Glycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gly_p \"Glycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox__un_c \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox__un_c \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox__un_e \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox__un_e \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gly_e \"Glycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gly_e \"Glycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg140_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg140_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gly_c \"Glycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gly_c \"Glycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lald__D_c \"D-Lactaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lald__D_c \"D-Lactaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__D_p \"D-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__D_p \"D-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2mcacn_c \"cis-2-Methylaconitate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2mcacn_c \"cis-2-Methylaconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dhap_c \"Dihydroxyacetone-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dhap_c \"Dihydroxyacetone-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__D_c \"D-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__D_c \"D-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__D_e \"D-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__D_e \"D-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcddec5eACP_c \"R-3-hydroxy-cis-dodec-5-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcddec5eACP_c \"R-3-hydroxy-cis-dodec-5-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lald__L_c \"L-Lactaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lald__L_c \"L-Lactaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_6pgc_c \"6-Phospho-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_6pgc_c \"6-Phospho-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucsal_c \"Succinic-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucsal_c \"Succinic-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_murein5px4p_p \"two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_murein5px4p_p \"two-disacharide-linked-murein-units-pentapeptide-crosslinked-tetrapeptide-A2pm-D-ala--middle-of-chain\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hbz_c \"4-Hydroxybenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hbz_c \"4-Hydroxybenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malthp_c \"Maltoheptaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malthp_c \"Maltoheptaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cdec3eACP_c \"cis-dec-3-enoyl-acyl-carrier-protein-n-C101\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cdec3eACP_c \"cis-dec-3-enoyl-acyl-carrier-protein-n-C101\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cl_p \"Chloride\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cl_p \"Chloride\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dhp_c \"2-Dehydropantoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dhp_c \"2-Dehydropantoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgtp_c \"dGTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgtp_c \"dGTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdpgalrmnmanabe_p \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdpgalrmnmanabe_p \"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_appp_c \"D-1-Aminopropan-2-ol-O-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_appp_c \"D-1-Aminopropan-2-ol-O-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa20Oag_e \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa20Oag_e \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ps181_c \"phosphatidylserine-dioctadec-11-enoyl-n-C181\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ps181_c \"phosphatidylserine-dioctadec-11-enoyl-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa20Oag_p \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa20Oag_p \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cl_e \"Chloride\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cl_e \"Chloride\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asp__L_c \"L-Aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asp__L_c \"L-Aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asp__L_e \"L-Aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asp__L_e \"L-Aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tagdp__D_c \"D-Tagatose-1-6-biphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tagdp__D_c \"D-Tagatose-1-6-biphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1agpg181_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1agpg181_p \"1-Acyl-sn-glycero-3-phosphoglycerol-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asp__L_p \"L-Aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asp__L_p \"L-Aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydx5p_c \"Pyridoxal-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydx5p_c \"Pyridoxal-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sl2a6o_c \"N-Succinyl-2-L-amino-6-oxoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sl2a6o_c \"N-Succinyl-2-L-amino-6-oxoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4ppcys_c \"N--R-4-Phosphopantothenoyl-L-cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4ppcys_c \"N--R-4-Phosphopantothenoyl-L-cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_6hmhptpp_c \"6-hydroxymethyl-dihydropterin-pyrophosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_6hmhptpp_c \"6-hydroxymethyl-dihydropterin-pyrophosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hemeO_c \"Heme-O\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hemeO_c \"Heme-O\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hdecACP_c \"R-3-Hydroxydecanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hdecACP_c \"R-3-Hydroxydecanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1odecg3p_p \"1-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1odecg3p_p \"1-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucr_p \"Sucrose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucr_p \"Sucrose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_datp_c \"dATP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_datp_c \"dATP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_1odecg3p_c \"1-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_1odecg3p_c \"1-octadecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucr_e \"Sucrose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucr_e \"Sucrose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3sala_c \"3-Sulfino-L-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3sala_c \"3-Sulfino-L-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa120_p \"1-2-didodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa120_p \"1-2-didodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3dhgulnp_c \"3-keto-L-gulonate-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3dhgulnp_c \"3-keto-L-gulonate-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pa120_c \"1-2-didodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pa120_c \"1-2-didodecanoyl-sn-glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3dhguln_c \"3-Dehydro-L-gulonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3dhguln_c \"3-Dehydro-L-gulonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hhexACP_c \"R-3-Hydroxyhexanoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hhexACP_c \"R-3-Hydroxyhexanoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcvac11eACP_c \"R-3-hydroxy-cis-vacc-11-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcvac11eACP_c \"R-3-hydroxy-cis-vacc-11-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2kmb_c \"2-keto-4-methylthiobutyrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2kmb_c \"2-keto-4-methylthiobutyrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtdpglu_c \"dTDPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtdpglu_c \"dTDPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg141_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg141_c \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpg141_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpg141_p \"2-Acyl-sn-glycero-3-phosphoglycerol-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_his__L_e \"L-Histidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_his__L_e \"L-Histidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddcaACP_c \"Dodecanoyl-ACP-n-C120ACP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddcaACP_c \"Dodecanoyl-ACP-n-C120ACP\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_clpn140_p \"cardiolipin-tetratetradecanoyl-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_clpn140_p \"cardiolipin-tetratetradecanoyl-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthox_c \"Oxidized-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthox_c \"Oxidized-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydam_c \"Pyridoxamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydam_c \"Pyridoxamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_imp_e \"IMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_imp_e \"IMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhm4p_c \"1-6-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhm4p_c \"1-6-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppoh_c \"1-Propanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppoh_c \"1-Propanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs_e \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dhbzs_e \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs_c \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dhbzs_c \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe160_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe160_c \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_prbatp_c \"1-5-Phosphoribosyl-ATP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_prbatp_c \"1-5-Phosphoribosyl-ATP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg160_p \"Phosphatidylglycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg160_p \"Phosphatidylglycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hx2coa_c \"trans-Hex-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hx2coa_c \"trans-Hex-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2agpe160_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2agpe160_p \"2-Acyl-sn-glycero-3-phosphoethanolamine-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs_p \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dhbzs_p \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ametam_c \"S-Adenosylmethioninamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ametam_c \"S-Adenosylmethioninamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pg160_c \"Phosphatidylglycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pg160_c \"Phosphatidylglycerol-dihexadecanoyl-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyclt_c \"Glycolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyclt_c \"Glycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyclt_e \"Glycolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyclt_e \"Glycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_AEP_e \"2-Aminoethylphosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_AEP_e \"2-Aminoethylphosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_AEP_c \"2-Aminoethylphosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_AEP_c \"2-Aminoethylphosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyclt_p \"Glycolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyclt_p \"Glycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_AEP_p \"2-Aminoethylphosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_AEP_p \"2-Aminoethylphosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_akg_c \"2-Oxoglutarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_akg_c \"2-Oxoglutarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm4p_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm4p_c \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_akg_e \"2-Oxoglutarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_akg_e \"2-Oxoglutarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2omhmbl_c \"2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2omhmbl_c \"2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1-4-benzoquinol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dad__2_c \"Deoxyadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dad__2_c \"Deoxyadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_akg_p \"2-Oxoglutarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_akg_p \"2-Oxoglutarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm4p_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm4p_p \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramyl-tetrapeptide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_toct2eACP_c \"trans-Oct-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_toct2eACP_c \"trans-Oct-2-enoyl-acyl-carrier-protein\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_14glucan_p \"1-4-alpha-D-glucan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_14glucan_p \"1-4-alpha-D-glucan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3c2hmp_c \"3-Carboxy-2-hydroxy-4-methylpentanoate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3c2hmp_c \"3-Carboxy-2-hydroxy-4-methylpentanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enlipa_e \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enlipa_e \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnatyr_c \"tRNA-Tyr\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnatyr_c \"tRNA-Tyr\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_14glucan_c \"1-4-alpha-D-glucan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_14glucan_c \"1-4-alpha-D-glucan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_14glucan_e \"1-4-alpha-D-glucan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_14glucan_e \"1-4-alpha-D-glucan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enlipa_p \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enlipa_p \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hacolipa_e \"hepta-acylated-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hacolipa_e \"hepta-acylated-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcdp8Oag_p \"Undecaprenyl-diphosphate-O-antigene-8x\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udcdp8Oag_p \"Undecaprenyl-diphosphate-O-antigene-8x\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucbz_c \"o-Succinylbenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucbz_c \"o-Succinylbenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_apg120_c \"acyl-phosphatidylglycerol-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_apg120_c \"acyl-phosphatidylglycerol-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam6p_c \"N-Acetyl-D-glucosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam6p_c \"N-Acetyl-D-glucosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__D_p \"D-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__D_p \"D-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__D_e \"D-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__D_e \"D-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__D_c \"D-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__D_c \"D-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no3_e \"Nitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no3_e \"Nitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_iletrna_c \"L-Isoleucyl-tRNA-Ile\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_iletrna_c \"L-Isoleucyl-tRNA-Ile\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3cmp_p \"3-cmp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3cmp_p \"3-cmp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5c2o3ed_c \"5-Carboxy-2-oxohept-3-enedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5c2o3ed_c \"5-Carboxy-2-oxohept-3-enedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trnaser_c \"tRNA-Ser\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trnaser_c \"tRNA-Ser\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3cmp_e \"3-cmp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3cmp_e \"3-cmp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_n8aspmd_c \"N8-Acetylspermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_n8aspmd_c \"N8-Acetylspermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dsbgox_p \"periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dsbgox_p \"periplasmic-disulfide-isomerasethiol-disulphide-oxidase-oxidized\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpgalfur_c \"UDP-D-galacto-1-4-furanose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpgalfur_c \"UDP-D-galacto-1-4-furanose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucgsa_c \"N2-Succinyl-L-glutamate-5-semialdehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucgsa_c \"N2-Succinyl-L-glutamate-5-semialdehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acorn_c \"N2-Acetyl-L-ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acorn_c \"N2-Acetyl-L-ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_codscl6b_c \"Cobalt-precorrin-6b\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_codscl6b_c \"Cobalt-precorrin-6b\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2dmmq8_c \"2-Demethylmenaquinone-8\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2dmmq8_c \"2-Demethylmenaquinone-8\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dctp_c \"dCTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dctp_c \"dCTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acser_p \"O-Acetyl-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acser_p \"O-Acetyl-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdd2coa_c \"trans-Hexadec-2-enoyl-CoA\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdd2coa_c \"trans-Hexadec-2-enoyl-CoA\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hba_c_boundary \"4-Hydroxy-benzyl-alcohol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hba_c_boundary \"4-Hydroxy-benzyl-alcohol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5drib_c_boundary \"5-deoxyribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5drib_c_boundary \"5-deoxyribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hmfurn_c_boundary \"4-hydroxy-5-methyl-3-2H-furanone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hmfurn_c_boundary \"4-hydroxy-5-methyl-3-2H-furanone\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oxam_c_boundary \"Oxamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oxam_c_boundary \"Oxamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chitob_e_boundary \"Chitobiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chitob_e_boundary \"Chitobiose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydxn_e_boundary \"Pyridoxine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydxn_e_boundary \"Pyridoxine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pydx_e_boundary \"Pyridoxal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pydx_e_boundary \"Pyridoxal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__R_e_boundary \"R-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__R_e_boundary \"R-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_12ppd__S_e_boundary \"S-Propane-1-2-diol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_12ppd__S_e_boundary \"S-Propane-1-2-diol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_14glucan_e_boundary \"1-4-alpha-D-glucan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_14glucan_e_boundary \"1-4-alpha-D-glucan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_15dap_e_boundary \"1-5-Diaminopentane\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_15dap_e_boundary \"1-5-Diaminopentane\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23camp_e_boundary \"2-3-Cyclic-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23camp_e_boundary \"2-3-Cyclic-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23ccmp_e_boundary \"2-3-Cyclic-CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23ccmp_e_boundary \"2-3-Cyclic-CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cgmp_e_boundary \"2-3-Cyclic-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cgmp_e_boundary \"2-3-Cyclic-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23cump_e_boundary \"2-3-Cyclic-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23cump_e_boundary \"2-3-Cyclic-UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dappa_e_boundary \"2-3-diaminopropionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_23dappa_e_boundary \"2-3-diaminopropionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_26dap__M_e_boundary \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_26dap__M_e_boundary \"meso-2-6-Diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2ddglcn_e_boundary \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2ddglcn_e_boundary \"2-Dehydro-3-deoxy-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_34dhpac_e_boundary \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_34dhpac_e_boundary \"3-4-Dihydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3amp_e_boundary \"3-AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3amp_e_boundary \"3-AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3cmp_e_boundary \"3-cmp\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3cmp_e_boundary \"3-cmp\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3gmp_e_boundary \"3-GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3gmp_e_boundary \"3-GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hcinnm_e_boundary \"3-hydroxycinnamic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hcinnm_e_boundary \"3-hydroxycinnamic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3hpppn_e_boundary \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3hpppn_e_boundary \"3-3-hydroxy-phenyl-propionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3ump_e_boundary \"3-UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3ump_e_boundary \"3-UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abut_e_boundary \"4-Aminobutanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abut_e_boundary \"4-Aminobutanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpacd_e_boundary \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpacd_e_boundary \"4-Hydroxyphenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_5dglcn_e_boundary \"5-Dehydro-D-gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_5dglcn_e_boundary \"5-Dehydro-D-gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdapDala_e_boundary \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdapDala_e_boundary \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_LalaDgluMdap_e_boundary \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_LalaDgluMdap_e_boundary \"L-alanine-D-glutamate-meso-2-6-diaminoheptanedioate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ac_e_boundary \"Acetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ac_e_boundary \"Acetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acac_e_boundary \"Acetoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acac_e_boundary \"Acetoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acald_e_boundary \"Acetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acald_e_boundary \"Acetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal1p_e_boundary \"N-Acetyl-D-galactosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal1p_e_boundary \"N-Acetyl-D-galactosamine-1-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgal_e_boundary \"N-Acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgal_e_boundary \"N-Acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam1p_e_boundary \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam1p_e_boundary \"N-Acetyl-D-glucosamine-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acgam_e_boundary \"N-Acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acgam_e_boundary \"N-Acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmana_e_boundary \"N-Acetyl-D-mannosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmana_e_boundary \"N-Acetyl-D-mannosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acmum_e_boundary \"N-Acetylmuramate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acmum_e_boundary \"N-Acetylmuramate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acnam_e_boundary \"N-Acetylneuraminate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acnam_e_boundary \"N-Acetylneuraminate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acolipa_e_boundary \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acolipa_e_boundary \"4-Amino-4-deoxy-L-arabinose-modified-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acser_e_boundary \"O-Acetyl-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acser_e_boundary \"O-Acetyl-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ade_e_boundary \"Adenine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ade_e_boundary \"Adenine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adn_e_boundary \"Adenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adn_e_boundary \"Adenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_adocbl_e_boundary \"Adenosylcobalamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_adocbl_e_boundary \"Adenosylcobalamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ag_e_boundary \"silver\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ag_e_boundary \"silver\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_agm_e_boundary \"Agmatine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_agm_e_boundary \"Agmatine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_akg_e_boundary \"2-Oxoglutarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_akg_e_boundary \"2-Oxoglutarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__B_e_boundary \"beta-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__B_e_boundary \"beta-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__D_e_boundary \"D-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__D_e_boundary \"D-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ala__L_e_boundary \"L-Alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ala__L_e_boundary \"L-Alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alaala_e_boundary \"D-Alanyl-D-alanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alaala_e_boundary \"D-Alanyl-D-alanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_all__D_e_boundary \"D-Allose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_all__D_e_boundary \"D-Allose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_alltn_e_boundary \"Allantoin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_alltn_e_boundary \"Allantoin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_amp_e_boundary \"AMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_amp_e_boundary \"AMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_anhgm_e_boundary \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_anhgm_e_boundary \"N-Acetyl-D-glucosamine-anhydrous-N-Acetylmuramic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arab__L_e_boundary \"L-Arabinose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arab__L_e_boundary \"L-Arabinose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn_e_boundary \"aerobactin-minus-Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn_e_boundary \"aerobactin-minus-Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arbtn__fe3_e_boundary \"Aerobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arbtn__fe3_e_boundary \"Aerobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_arg__L_e_boundary \"L-Arginine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_arg__L_e_boundary \"L-Arginine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ascb__L_e_boundary \"L-Ascorbate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ascb__L_e_boundary \"L-Ascorbate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asn__L_e_boundary \"L-Asparagine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asn__L_e_boundary \"L-Asparagine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_aso3_e_boundary \"arsenite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_aso3_e_boundary \"arsenite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_asp__L_e_boundary \"L-Aspartate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_asp__L_e_boundary \"L-Aspartate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_but_e_boundary \"Butyrate-n-C40\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_but_e_boundary \"Butyrate-n-C40\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_butso3_e_boundary \"butanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_butso3_e_boundary \"butanesulfonate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ca2_e_boundary \"Calcium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ca2_e_boundary \"Calcium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbi_e_boundary \"Cobinamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbi_e_boundary \"Cobinamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cbl1_e_boundary \"Cob-I-alamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cbl1_e_boundary \"Cob-I-alamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cd2_e_boundary \"Cadmium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cd2_e_boundary \"Cadmium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cgly_e_boundary \"Cys-Gly\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cgly_e_boundary \"Cys-Gly\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_chol_e_boundary \"Choline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_chol_e_boundary \"Choline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cit_e_boundary \"Citrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cit_e_boundary \"Citrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_icit_e_boundary \"Isocitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_icit_e_boundary \"Isocitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_acon__C_e_boundary \"cis-Aconitate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_acon__C_e_boundary \"cis-Aconitate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cl_e_boundary \"Chloride\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cl_e_boundary \"Chloride\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cmp_e_boundary \"CMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cmp_e_boundary \"CMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_co2_e_boundary \"CO2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_co2_e_boundary \"CO2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cobalt2_e_boundary \"Co2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cobalt2_e_boundary \"Co2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa_e_boundary \"core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa_e_boundary \"core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn_e_boundary \"coprogen\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn_e_boundary \"coprogen\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cpgn__un_e_boundary \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cpgn__un_e_boundary \"coprogen-unloaded-no-Fe-III-\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_crn_e_boundary \"L-Carnitine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_crn_e_boundary \"L-Carnitine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_csn_e_boundary \"Cytosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_csn_e_boundary \"Cytosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu2_e_boundary \"Cu2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu2_e_boundary \"Cu2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cu_e_boundary \"Cu\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cu_e_boundary \"Cu\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cyan_e_boundary \"Hydrogen-cyanide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cyan_e_boundary \"Hydrogen-cyanide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cynt_e_boundary \"Cyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cynt_e_boundary \"Cyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__D_e_boundary \"D-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__D_e_boundary \"D-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cys__L_e_boundary \"L-Cysteine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cys__L_e_boundary \"L-Cysteine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cysi__L_e_boundary \"L-Cystine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cysi__L_e_boundary \"L-Cystine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_cytd_e_boundary \"Cytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_cytd_e_boundary \"Cytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dad__2_e_boundary \"Deoxyadenosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dad__2_e_boundary \"Deoxyadenosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_damp_e_boundary \"dAMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_damp_e_boundary \"dAMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dca_e_boundary \"Decanoate-n-C100\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dca_e_boundary \"Decanoate-n-C100\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcmp_e_boundary \"dCMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcmp_e_boundary \"dCMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dcyt_e_boundary \"Deoxycytidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dcyt_e_boundary \"Deoxycytidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ddca_e_boundary \"Dodecanoate-n-C120\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ddca_e_boundary \"Dodecanoate-n-C120\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgmp_e_boundary \"dGMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgmp_e_boundary \"dGMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dgsn_e_boundary \"Deoxyguanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dgsn_e_boundary \"Deoxyguanosine\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dha_e_boundary \"Dihydroxyacetone\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dha_e_boundary \"Dihydroxyacetone\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dimp_e_boundary \"dIMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dimp_e_boundary \"dIMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_din_e_boundary \"Deoxyinosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_din_e_boundary \"Deoxyinosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dms_e_boundary \"Dimethyl-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dms_e_boundary \"Dimethyl-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dmso_e_boundary \"Dimethyl-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dmso_e_boundary \"Dimethyl-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dopa_e_boundary \"Dopamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dopa_e_boundary \"Dopamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dtmp_e_boundary \"dTMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dtmp_e_boundary \"dTMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dump_e_boundary \"dUMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_dump_e_boundary \"dUMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_duri_e_boundary \"Deoxyuridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_duri_e_boundary \"Deoxyuridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_eca4colipa_e_boundary \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_eca4colipa_e_boundary \"enterobacterial-common-antigen-x4-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enlipa_e_boundary \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enlipa_e_boundary \"phosphoethanolamine-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_enter_e_boundary \"Enterochelin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_enter_e_boundary \"Enterochelin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etha_e_boundary \"Ethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etha_e_boundary \"Ethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ethso3_e_boundary \"ethanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ethso3_e_boundary \"ethanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_etoh_e_boundary \"Ethanol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_etoh_e_boundary \"Ethanol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_f6p_e_boundary \"D-Fructose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_f6p_e_boundary \"D-Fructose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fald_e_boundary \"Formaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fald_e_boundary \"Formaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe2_e_boundary \"Fe2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe2_e_boundary \"Fe2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3_e_boundary \"Fe3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3_e_boundary \"Fe3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dcit_e_boundary \"Fe-III-dicitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dcit_e_boundary \"Fe-III-dicitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs_e_boundary \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3dhbzs_e_boundary \"ferric-2-3-dihydroxybenzoylserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox_e_boundary \"Fe-III-hydroxamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox_e_boundary \"Fe-III-hydroxamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3hox__un_e_boundary \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fe3hox__un_e_boundary \"Fe-III-hydoxamate-unloaded\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm_e_boundary \"Ferrichrome\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm_e_boundary \"Ferrichrome\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fecrm__un_e_boundary \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fecrm__un_e_boundary \"Ferrichrome-minus-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feenter_e_boundary \"Fe-enterobactin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feenter_e_boundary \"Fe-enterobactin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam_e_boundary \"ferroxamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam_e_boundary \"ferroxamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feoxam__un_e_boundary \"ferroxamine-minus-Fe-3\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feoxam__un_e_boundary \"ferroxamine-minus-Fe-3\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_for_e_boundary \"Formate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_for_e_boundary \"Formate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fru_e_boundary \"D-Fructose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fru_e_boundary \"D-Fructose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_frulys_e_boundary \"fructoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_frulys_e_boundary \"fructoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fruur_e_boundary \"D-Fructuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fruur_e_boundary \"D-Fructuronate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fuc__L_e_boundary \"L-Fucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fuc__L_e_boundary \"L-Fucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fum_e_boundary \"Fumarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_fum_e_boundary \"Fumarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g1p_e_boundary \"D-Glucose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g1p_e_boundary \"D-Glucose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pc_e_boundary \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pc_e_boundary \"sn-Glycero-3-phosphocholine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pe_e_boundary \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pe_e_boundary \"sn-Glycero-3-phosphoethanolamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pg_e_boundary \"Glycerophosphoglycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pg_e_boundary \"Glycerophosphoglycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3pi_e_boundary \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3pi_e_boundary \"sn-Glycero-3-phospho-1-inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g3ps_e_boundary \"Glycerophosphoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g3ps_e_boundary \"Glycerophosphoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_g6p_e_boundary \"D-Glucose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_g6p_e_boundary \"D-Glucose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal1p_e_boundary \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal1p_e_boundary \"alpha-D-Galactose-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal__bD_e_boundary \"beta-D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal__bD_e_boundary \"beta-D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gal_e_boundary \"D-Galactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gal_e_boundary \"D-Galactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galct__D_e_boundary \"D-Galactarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galct__D_e_boundary \"D-Galactarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__D_e_boundary \"D-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__D_e_boundary \"D-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galctn__L_e_boundary \"L-Galactonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galctn__L_e_boundary \"L-Galactonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galt_e_boundary \"Galactitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galt_e_boundary \"Galactitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_galur_e_boundary \"D-Galacturonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_galur_e_boundary \"D-Galacturonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam6p_e_boundary \"D-Glucosamine-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam6p_e_boundary \"D-Glucosamine-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gam_e_boundary \"D-Glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gam_e_boundary \"D-Glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gbbtn_e_boundary \"gamma-butyrobetaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gbbtn_e_boundary \"gamma-butyrobetaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gdp_e_boundary \"GDP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gdp_e_boundary \"GDP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glc__D_e_boundary \"D-Glucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glc__D_e_boundary \"D-Glucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcn_e_boundary \"D-Gluconate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcn_e_boundary \"D-Gluconate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcr_e_boundary \"D-Glucarate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcr_e_boundary \"D-Glucarate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur1p_e_boundary \"D-Glucuronate-1-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur1p_e_boundary \"D-Glucuronate-1-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glcur_e_boundary \"D-Glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glcur_e_boundary \"D-Glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gln__L_e_boundary \"L-Glutamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gln__L_e_boundary \"L-Glutamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glu__L_e_boundary \"L-Glutamate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glu__L_e_boundary \"L-Glutamate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gly_e_boundary \"Glycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gly_e_boundary \"Glycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyald_e_boundary \"D-Glyceraldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyald_e_boundary \"D-Glyceraldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyb_e_boundary \"Glycine-betaine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyb_e_boundary \"Glycine-betaine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc2p_e_boundary \"Glycerol-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc2p_e_boundary \"Glycerol-2-phosphate\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc3p_e_boundary \"Glycerol-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc3p_e_boundary \"Glycerol-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc__R_e_boundary \"R-Glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc__R_e_boundary \"R-Glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyc_e_boundary \"Glycerol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyc_e_boundary \"Glycerol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_glyclt_e_boundary \"Glycolate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_glyclt_e_boundary \"Glycolate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gmp_e_boundary \"GMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gmp_e_boundary \"GMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gsn_e_boundary \"Guanosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gsn_e_boundary \"Guanosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthox_e_boundary \"Oxidized-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthox_e_boundary \"Oxidized-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gthrd_e_boundary \"Reduced-glutathione\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gthrd_e_boundary \"Reduced-glutathione\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gtp_e_boundary \"GTP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gtp_e_boundary \"GTP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_gua_e_boundary \"Guanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_gua_e_boundary \"Guanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2_e_boundary \"H2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2_e_boundary \"H2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o2_e_boundary \"Hydrogen-peroxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o2_e_boundary \"Hydrogen-peroxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2o_e_boundary \"H2O\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2o_e_boundary \"H2O\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h2s_e_boundary \"Hydrogen-sulfide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h2s_e_boundary \"Hydrogen-sulfide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_h_e_boundary \"H\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_h_e_boundary \"H\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hacolipa_e_boundary \"hepta-acylated-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hacolipa_e_boundary \"hepta-acylated-core-oligosaccharide-lipid-A-E-coli\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_halipa_e_boundary \"hepta-acylated-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_halipa_e_boundary \"hepta-acylated-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdca_e_boundary \"Hexadecanoate-n-C160\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdca_e_boundary \"Hexadecanoate-n-C160\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hdcea_e_boundary \"Hexadecenoate-n-C161\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hdcea_e_boundary \"Hexadecenoate-n-C161\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hg2_e_boundary \"Hg2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hg2_e_boundary \"Hg2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_his__L_e_boundary \"L-Histidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_his__L_e_boundary \"L-Histidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hom__L_e_boundary \"L-Homoserine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hom__L_e_boundary \"L-Homoserine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxa_e_boundary \"Hexanoate-n-C60\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxa_e_boundary \"Hexanoate-n-C60\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_hxan_e_boundary \"Hypoxanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_hxan_e_boundary \"Hypoxanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_idon__L_e_boundary \"L-Idonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_idon__L_e_boundary \"L-Idonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ile__L_e_boundary \"L-Isoleucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ile__L_e_boundary \"L-Isoleucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_imp_e_boundary \"IMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_imp_e_boundary \"IMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_indole_e_boundary \"Indole\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_indole_e_boundary \"Indole\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_inost_e_boundary \"myo-Inositol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_inost_e_boundary \"myo-Inositol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ins_e_boundary \"Inosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ins_e_boundary \"Inosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_isetac_e_boundary \"Isethionic-acid\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_isetac_e_boundary \"Isethionic-acid\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_k_e_boundary \"potassium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_k_e_boundary \"potassium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_kdo2lipid4_e_boundary \"KDO-2-lipid-IV-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_kdo2lipid4_e_boundary \"KDO-2-lipid-IV-A\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__D_e_boundary \"D-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__D_e_boundary \"D-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lac__L_e_boundary \"L-Lactate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lac__L_e_boundary \"L-Lactate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lcts_e_boundary \"Lactose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lcts_e_boundary \"Lactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_leu__L_e_boundary \"L-Leucine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_leu__L_e_boundary \"L-Leucine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa__cold_e_boundary \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa__cold_e_boundary \"cold-adapted-KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lipa_e_boundary \"KDO-2-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lipa_e_boundary \"KDO-2-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lys__L_e_boundary \"L-Lysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lys__L_e_boundary \"L-Lysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_lyx__L_e_boundary \"L-Lyxose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_lyx__L_e_boundary \"L-Lyxose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__D_e_boundary \"D-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__D_e_boundary \"D-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mal__L_e_boundary \"L-Malate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mal__L_e_boundary \"L-Malate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malt_e_boundary \"Maltose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malt_e_boundary \"Maltose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malthx_e_boundary \"Maltohexaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malthx_e_boundary \"Maltohexaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltpt_e_boundary \"Maltopentaose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltpt_e_boundary \"Maltopentaose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_malttr_e_boundary \"Maltotriose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_malttr_e_boundary \"Maltotriose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_maltttr_e_boundary \"Maltotetraose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_maltttr_e_boundary \"Maltotetraose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man6p_e_boundary \"D-Mannose-6-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man6p_e_boundary \"D-Mannose-6-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_man_e_boundary \"D-Mannose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_man_e_boundary \"D-Mannose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_manglyc_e_boundary \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_manglyc_e_boundary \"2-alpha-D-Mannosyl-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_melib_e_boundary \"Melibiose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_melib_e_boundary \"Melibiose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__D_e_boundary \"D-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__D_e_boundary \"D-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_met__L_e_boundary \"L-Methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_met__L_e_boundary \"L-Methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__R__L_e_boundary \"L-methionine-R-sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__R__L_e_boundary \"L-methionine-R-sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_metsox__S__L_e_boundary \"L-Methionine-Sulfoxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_metsox__S__L_e_boundary \"L-Methionine-Sulfoxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mg2_e_boundary \"magnesium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mg2_e_boundary \"magnesium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_minohp_e_boundary \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_minohp_e_boundary \"myo-Inositol-hexakisphosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mmet_e_boundary \"S-Methyl-L-methionine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mmet_e_boundary \"S-Methyl-L-methionine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mn2_e_boundary \"Mn2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mn2_e_boundary \"Mn2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mnl_e_boundary \"D-Mannitol\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mnl_e_boundary \"D-Mannitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mobd_e_boundary \"Molybdate-MoO4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_mso3_e_boundary \"methanesulfonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_mso3_e_boundary \"methanesulfonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_n2o_e_boundary \"Nitrous-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_n2o_e_boundary \"Nitrous-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_na1_e_boundary \"Sodium\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_na1_e_boundary \"Sodium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nac_e_boundary \"Nicotinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nac_e_boundary \"Nicotinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nh4_e_boundary \"Ammonium\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nh4_e_boundary \"Ammonium\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ni2_e_boundary \"nickel\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ni2_e_boundary \"nickel\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_nmn_e_boundary \"NMN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_nmn_e_boundary \"NMN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no2_e_boundary \"Nitrite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no2_e_boundary \"Nitrite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no3_e_boundary \"Nitrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no3_e_boundary \"Nitrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_no_e_boundary \"Nitric-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_no_e_boundary \"Nitric-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2_e_boundary \"O2\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2_e_boundary \"O2\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_o2s_e_boundary \"Superoxide-anion\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_o2s_e_boundary \"Superoxide-anion\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdca_e_boundary \"octadecanoate-n-C180\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdca_e_boundary \"octadecanoate-n-C180\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ocdcea_e_boundary \"octadecenoate-n-C181\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ocdcea_e_boundary \"octadecenoate-n-C181\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_octa_e_boundary \"octanoate-n-C80\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_octa_e_boundary \"octanoate-n-C80\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orn_e_boundary \"Ornithine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orn_e_boundary \"Ornithine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_orot_e_boundary \"Orotate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_orot_e_boundary \"Orotate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_oaa_e_boundary \"Oxaloacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_oaa_e_boundary \"Oxaloacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pacald_e_boundary \"Phenylacetaldehyde\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pacald_e_boundary \"Phenylacetaldehyde\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_peamn_e_boundary \"Phenethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_peamn_e_boundary \"Phenethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_phe__L_e_boundary \"L-Phenylalanine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_phe__L_e_boundary \"L-Phenylalanine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pheme_e_boundary \"Protoheme\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pheme_e_boundary \"Protoheme\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pi_e_boundary \"Phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pi_e_boundary \"Phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pnto__R_e_boundary \"R-Pantothenate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pnto__R_e_boundary \"R-Pantothenate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppa_e_boundary \"Propionate-n-C30\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppa_e_boundary \"Propionate-n-C30\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppal_e_boundary \"Propanal\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppal_e_boundary \"Propanal\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pppn_e_boundary \"Phenylpropanoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pppn_e_boundary \"Phenylpropanoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ppt_e_boundary \"Phosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ppt_e_boundary \"Phosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pro__L_e_boundary \"L-Proline\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pro__L_e_boundary \"L-Proline\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_progly_e_boundary \"L-Prolinylglycine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_progly_e_boundary \"L-Prolinylglycine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_psclys_e_boundary \"psicoselysine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_psclys_e_boundary \"psicoselysine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pser__L_e_boundary \"O-Phospho-L-serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pser__L_e_boundary \"O-Phospho-L-serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ptrc_e_boundary \"Putrescine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ptrc_e_boundary \"Putrescine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pyr_e_boundary \"Pyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pyr_e_boundary \"Pyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_r5p_e_boundary \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_r5p_e_boundary \"alpha-D-Ribose-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rib__D_e_boundary \"D-Ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rib__D_e_boundary \"D-Ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rmn_e_boundary \"L-Rhamnose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_rmn_e_boundary \"L-Rhamnose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sbt__D_e_boundary \"D-Sorbitol\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sbt__D_e_boundary \"D-Sorbitol\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__D_e_boundary \"D-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__D_e_boundary \"D-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ser__L_e_boundary \"L-Serine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ser__L_e_boundary \"L-Serine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_skm_e_boundary \"Shikimate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_skm_e_boundary \"Shikimate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so2_e_boundary \"sulfur-dioxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so2_e_boundary \"sulfur-dioxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so3_e_boundary \"Sulfite\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so3_e_boundary \"Sulfite\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_so4_e_boundary \"Sulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_so4_e_boundary \"Sulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_spmd_e_boundary \"Spermidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_spmd_e_boundary \"Spermidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_succ_e_boundary \"Succinate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_succ_e_boundary \"Succinate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sucr_e_boundary \"Sucrose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sucr_e_boundary \"Sucrose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_sulfac_e_boundary \"sulfoacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_sulfac_e_boundary \"sulfoacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__L_e_boundary \"L-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__L_e_boundary \"L-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_taur_e_boundary \"Taurine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_taur_e_boundary \"Taurine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcynt_e_boundary \"Thiocyanate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcynt_e_boundary \"Thiocyanate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thm_e_boundary \"Thiamin\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thm_e_boundary \"Thiamin\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thr__L_e_boundary \"L-Threonine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thr__L_e_boundary \"L-Threonine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thrp_e_boundary \"L-Threonine-O-3-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thrp_e_boundary \"L-Threonine-O-3-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thym_e_boundary \"Thymine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thym_e_boundary \"Thymine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_thymd_e_boundary \"Thymidine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_thymd_e_boundary \"Thymidine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tma_e_boundary \"trimethylamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tma_e_boundary \"trimethylamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tmao_e_boundary \"Trimethylamine-N-oxide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tmao_e_boundary \"Trimethylamine-N-oxide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tre_e_boundary \"Trehalose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tre_e_boundary \"Trehalose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_trp__L_e_boundary \"L-Tryptophan\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_trp__L_e_boundary \"L-Tryptophan\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tsul_e_boundary \"Thiosulfate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tsul_e_boundary \"Thiosulfate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdca_e_boundary \"tetradecanoate-n-C140\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdca_e_boundary \"tetradecanoate-n-C140\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ttdcea_e_boundary \"tetradecenoate-n-C141\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ttdcea_e_boundary \"tetradecenoate-n-C141\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tungs_e_boundary \"tungstate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tungs_e_boundary \"tungstate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tym_e_boundary \"Tyramine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tym_e_boundary \"Tyramine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyr__L_e_boundary \"L-Tyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyr__L_e_boundary \"L-Tyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tyrp_e_boundary \"Phosphotyrosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tyrp_e_boundary \"Phosphotyrosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uacgam_e_boundary \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uacgam_e_boundary \"UDP-N-acetyl-D-glucosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpacgal_e_boundary \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpacgal_e_boundary \"UDP-N-acetyl-D-galactosamine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpg_e_boundary \"UDPglucose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpg_e_boundary \"UDPglucose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpgal_e_boundary \"UDPgalactose\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpgal_e_boundary \"UDPgalactose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udpglcur_e_boundary \"UDP-D-glucuronate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_udpglcur_e_boundary \"UDP-D-glucuronate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ump_e_boundary \"UMP\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ump_e_boundary \"UMP\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_ura_e_boundary \"Uracil\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_ura_e_boundary \"Uracil\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_urea_e_boundary \"Urea\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_urea_e_boundary \"Urea\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_uri_e_boundary \"Uridine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_uri_e_boundary \"Uridine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_val__L_e_boundary \"L-Valine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_val__L_e_boundary \"L-Valine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xan_e_boundary \"Xanthine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xan_e_boundary \"Xanthine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xmp_e_boundary \"Xanthosine-5-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xmp_e_boundary \"Xanthosine-5-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xtsn_e_boundary \"Xanthosine\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xtsn_e_boundary \"Xanthosine\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xyl__D_e_boundary \"D-Xylose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xyl__D_e_boundary \"D-Xylose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_xylu__L_e_boundary \"L-Xylulose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_xylu__L_e_boundary \"L-Xylulose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_zn2_e_boundary \"Zinc\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_zn2_e_boundary \"Zinc\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_AEP_e_boundary \"2-Aminoethylphosphonate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_AEP_e_boundary \"2-Aminoethylphosphonate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hoxpac_e_boundary \"4-Hydroxyphenylacetate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4hoxpac_e_boundary \"4-Hydroxyphenylacetate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_remnant1_e_boundary \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_remnant1_e_boundary \"residual-atoms-of-reaction-DMBZIDSYN\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipa20Oag_e_boundary \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_colipa20Oag_e_boundary \"O-antigen-x20-core-oligosaccharide-lipid-A\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4_e_boundary \"Salmochelin-S4\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4_e_boundary \"Salmochelin-S4\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs4fe_e_boundary \"Salmochelin-S4-Fe-III\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchs4fe_e_boundary \"Salmochelin-S4-Fe-III\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchsx_e_boundary \"Salmochelin-SX\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_salchsx_e_boundary \"Salmochelin-SX\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tag__D_e_boundary \"D-Tagatose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tag__D_e_boundary \"D-Tagatose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_airs_e_boundary \"Aminoimidazole-riboside\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_airs_e_boundary \"Aminoimidazole-riboside\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_pep_e_boundary \"Phosphoenolpyruvate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_pep_e_boundary \"Phosphoenolpyruvate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_2pg_e_boundary \"D-Glycerate-2-phosphate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_2pg_e_boundary \"D-Glycerate-2-phosphate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_3pg_e_boundary \"3-Phospho-D-glycerate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_3pg_e_boundary \"3-Phospho-D-glycerate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tet_e_boundary \"Tetrathionate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tet_e_boundary \"Tetrathionate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_foam_e_boundary \"Formamide\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_foam_e_boundary \"Formamide\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tartr__D_e_boundary \"D-tartrate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tartr__D_e_boundary \"D-tartrate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4abz_e_boundary \"4-Aminobenzoate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_4abz_e_boundary \"4-Aminobenzoate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxB_e_boundary \"Ferrioxamine-B\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxB_e_boundary \"Ferrioxamine-B\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxBfe_e_boundary \"Ferrioxamine-B-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxBfe_e_boundary \"Ferrioxamine-B-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxE_e_boundary \"Ferrioxamine-E\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxE_e_boundary \"Ferrioxamine-E\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxEfe_e_boundary \"Ferrioxamine-E-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxEfe_e_boundary \"Ferrioxamine-E-fe\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxG_e_boundary \"Ferrioxamine-G\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxG_e_boundary \"Ferrioxamine-G\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_feroxGfe_e_boundary \"Ferrioxamine-G-fe\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_feroxGfe_e_boundary \"Ferrioxamine-G-fe\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_drib_e_boundary \"2-Deoxy-D-ribose\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_drib_e_boundary \"2-Deoxy-D-ribose\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_dxyl_e_boundary \"dxyl_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2fe_e_boundary \"salchs2fe_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_rnam_e_boundary \"rnam_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_colipaOA_e_boundary \"colipaOA_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo4_e_boundary \"udcpo4_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tcb_e_boundary \"tricarballylate\">\n",
+      "Use of FORMULA in the notes element is discouraged, use fbc:chemicalFormula instead: <Species M_tcb_e_boundary \"tricarballylate\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_fe3dhbzs3_e_boundary \"fe3dhbzs3_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_23dhbzs3_e_boundary \"23dhbzs3_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_guln__L_e_boundary \"guln__L_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_udcpo5_e_boundary \"udcpo5_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_4hthr_e_boundary \"4hthr_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_salchs2_e_boundary \"salchs2_e\">\n",
+      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species M_tton_e_boundary \"tton_e\">\n",
+      "Adding exchange reaction EX_4hba_c_boundary with default bounds for boundary metabolite: 4hba_c_boundary.\n",
+      "Adding exchange reaction EX_5drib_c_boundary with default bounds for boundary metabolite: 5drib_c_boundary.\n",
+      "Adding exchange reaction EX_hmfurn_c_boundary with default bounds for boundary metabolite: hmfurn_c_boundary.\n",
+      "Adding exchange reaction EX_oxam_c_boundary with default bounds for boundary metabolite: oxam_c_boundary.\n",
+      "Adding exchange reaction EX_chitob_e_boundary with default bounds for boundary metabolite: chitob_e_boundary.\n",
+      "Adding exchange reaction EX_pydxn_e_boundary with default bounds for boundary metabolite: pydxn_e_boundary.\n",
+      "Adding exchange reaction EX_pydx_e_boundary with default bounds for boundary metabolite: pydx_e_boundary.\n",
+      "Adding exchange reaction EX_12ppd__R_e_boundary with default bounds for boundary metabolite: 12ppd__R_e_boundary.\n",
+      "Adding exchange reaction EX_12ppd__S_e_boundary with default bounds for boundary metabolite: 12ppd__S_e_boundary.\n",
+      "Adding exchange reaction EX_14glucan_e_boundary with default bounds for boundary metabolite: 14glucan_e_boundary.\n",
+      "Adding exchange reaction EX_15dap_e_boundary with default bounds for boundary metabolite: 15dap_e_boundary.\n",
+      "Adding exchange reaction EX_23camp_e_boundary with default bounds for boundary metabolite: 23camp_e_boundary.\n",
+      "Adding exchange reaction EX_23ccmp_e_boundary with default bounds for boundary metabolite: 23ccmp_e_boundary.\n",
+      "Adding exchange reaction EX_23cgmp_e_boundary with default bounds for boundary metabolite: 23cgmp_e_boundary.\n",
+      "Adding exchange reaction EX_23cump_e_boundary with default bounds for boundary metabolite: 23cump_e_boundary.\n",
+      "Adding exchange reaction EX_23dappa_e_boundary with default bounds for boundary metabolite: 23dappa_e_boundary.\n",
+      "Adding exchange reaction EX_26dap__M_e_boundary with default bounds for boundary metabolite: 26dap__M_e_boundary.\n",
+      "Adding exchange reaction EX_2ddglcn_e_boundary with default bounds for boundary metabolite: 2ddglcn_e_boundary.\n",
+      "Adding exchange reaction EX_34dhpac_e_boundary with default bounds for boundary metabolite: 34dhpac_e_boundary.\n",
+      "Adding exchange reaction EX_3amp_e_boundary with default bounds for boundary metabolite: 3amp_e_boundary.\n",
+      "Adding exchange reaction EX_3cmp_e_boundary with default bounds for boundary metabolite: 3cmp_e_boundary.\n",
+      "Adding exchange reaction EX_3gmp_e_boundary with default bounds for boundary metabolite: 3gmp_e_boundary.\n",
+      "Adding exchange reaction EX_3hcinnm_e_boundary with default bounds for boundary metabolite: 3hcinnm_e_boundary.\n",
+      "Adding exchange reaction EX_3hpppn_e_boundary with default bounds for boundary metabolite: 3hpppn_e_boundary.\n",
+      "Adding exchange reaction EX_3ump_e_boundary with default bounds for boundary metabolite: 3ump_e_boundary.\n",
+      "Adding exchange reaction EX_4abut_e_boundary with default bounds for boundary metabolite: 4abut_e_boundary.\n",
+      "Adding exchange reaction EX_4hoxpacd_e_boundary with default bounds for boundary metabolite: 4hoxpacd_e_boundary.\n",
+      "Adding exchange reaction EX_5dglcn_e_boundary with default bounds for boundary metabolite: 5dglcn_e_boundary.\n",
+      "Adding exchange reaction EX_LalaDgluMdapDala_e_boundary with default bounds for boundary metabolite: LalaDgluMdapDala_e_boundary.\n",
+      "Adding exchange reaction EX_LalaDgluMdap_e_boundary with default bounds for boundary metabolite: LalaDgluMdap_e_boundary.\n",
+      "Adding exchange reaction EX_ac_e_boundary with default bounds for boundary metabolite: ac_e_boundary.\n",
+      "Adding exchange reaction EX_acac_e_boundary with default bounds for boundary metabolite: acac_e_boundary.\n",
+      "Adding exchange reaction EX_acald_e_boundary with default bounds for boundary metabolite: acald_e_boundary.\n",
+      "Adding exchange reaction EX_acgal1p_e_boundary with default bounds for boundary metabolite: acgal1p_e_boundary.\n",
+      "Adding exchange reaction EX_acgal_e_boundary with default bounds for boundary metabolite: acgal_e_boundary.\n",
+      "Adding exchange reaction EX_acgam1p_e_boundary with default bounds for boundary metabolite: acgam1p_e_boundary.\n",
+      "Adding exchange reaction EX_acgam_e_boundary with default bounds for boundary metabolite: acgam_e_boundary.\n",
+      "Adding exchange reaction EX_acmana_e_boundary with default bounds for boundary metabolite: acmana_e_boundary.\n",
+      "Adding exchange reaction EX_acmum_e_boundary with default bounds for boundary metabolite: acmum_e_boundary.\n",
+      "Adding exchange reaction EX_acnam_e_boundary with default bounds for boundary metabolite: acnam_e_boundary.\n",
+      "Adding exchange reaction EX_acolipa_e_boundary with default bounds for boundary metabolite: acolipa_e_boundary.\n",
+      "Adding exchange reaction EX_acser_e_boundary with default bounds for boundary metabolite: acser_e_boundary.\n",
+      "Adding exchange reaction EX_ade_e_boundary with default bounds for boundary metabolite: ade_e_boundary.\n",
+      "Adding exchange reaction EX_adn_e_boundary with default bounds for boundary metabolite: adn_e_boundary.\n",
+      "Adding exchange reaction EX_adocbl_e_boundary with default bounds for boundary metabolite: adocbl_e_boundary.\n",
+      "Adding exchange reaction EX_ag_e_boundary with default bounds for boundary metabolite: ag_e_boundary.\n",
+      "Adding exchange reaction EX_agm_e_boundary with default bounds for boundary metabolite: agm_e_boundary.\n",
+      "Adding exchange reaction EX_akg_e_boundary with default bounds for boundary metabolite: akg_e_boundary.\n",
+      "Adding exchange reaction EX_ala__B_e_boundary with default bounds for boundary metabolite: ala__B_e_boundary.\n",
+      "Adding exchange reaction EX_ala__D_e_boundary with default bounds for boundary metabolite: ala__D_e_boundary.\n",
+      "Adding exchange reaction EX_ala__L_e_boundary with default bounds for boundary metabolite: ala__L_e_boundary.\n",
+      "Adding exchange reaction EX_alaala_e_boundary with default bounds for boundary metabolite: alaala_e_boundary.\n",
+      "Adding exchange reaction EX_all__D_e_boundary with default bounds for boundary metabolite: all__D_e_boundary.\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Adding exchange reaction EX_alltn_e_boundary with default bounds for boundary metabolite: alltn_e_boundary.\n",
+      "Adding exchange reaction EX_amp_e_boundary with default bounds for boundary metabolite: amp_e_boundary.\n",
+      "Adding exchange reaction EX_anhgm_e_boundary with default bounds for boundary metabolite: anhgm_e_boundary.\n",
+      "Adding exchange reaction EX_arab__L_e_boundary with default bounds for boundary metabolite: arab__L_e_boundary.\n",
+      "Adding exchange reaction EX_arbtn_e_boundary with default bounds for boundary metabolite: arbtn_e_boundary.\n",
+      "Adding exchange reaction EX_arbtn__fe3_e_boundary with default bounds for boundary metabolite: arbtn__fe3_e_boundary.\n",
+      "Adding exchange reaction EX_arg__L_e_boundary with default bounds for boundary metabolite: arg__L_e_boundary.\n",
+      "Adding exchange reaction EX_ascb__L_e_boundary with default bounds for boundary metabolite: ascb__L_e_boundary.\n",
+      "Adding exchange reaction EX_asn__L_e_boundary with default bounds for boundary metabolite: asn__L_e_boundary.\n",
+      "Adding exchange reaction EX_aso3_e_boundary with default bounds for boundary metabolite: aso3_e_boundary.\n",
+      "Adding exchange reaction EX_asp__L_e_boundary with default bounds for boundary metabolite: asp__L_e_boundary.\n",
+      "Adding exchange reaction EX_but_e_boundary with default bounds for boundary metabolite: but_e_boundary.\n",
+      "Adding exchange reaction EX_butso3_e_boundary with default bounds for boundary metabolite: butso3_e_boundary.\n",
+      "Adding exchange reaction EX_ca2_e_boundary with default bounds for boundary metabolite: ca2_e_boundary.\n",
+      "Adding exchange reaction EX_cbi_e_boundary with default bounds for boundary metabolite: cbi_e_boundary.\n",
+      "Adding exchange reaction EX_cbl1_e_boundary with default bounds for boundary metabolite: cbl1_e_boundary.\n",
+      "Adding exchange reaction EX_cd2_e_boundary with default bounds for boundary metabolite: cd2_e_boundary.\n",
+      "Adding exchange reaction EX_cgly_e_boundary with default bounds for boundary metabolite: cgly_e_boundary.\n",
+      "Adding exchange reaction EX_chol_e_boundary with default bounds for boundary metabolite: chol_e_boundary.\n",
+      "Adding exchange reaction EX_cit_e_boundary with default bounds for boundary metabolite: cit_e_boundary.\n",
+      "Adding exchange reaction EX_icit_e_boundary with default bounds for boundary metabolite: icit_e_boundary.\n",
+      "Adding exchange reaction EX_acon__C_e_boundary with default bounds for boundary metabolite: acon__C_e_boundary.\n",
+      "Adding exchange reaction EX_cl_e_boundary with default bounds for boundary metabolite: cl_e_boundary.\n",
+      "Adding exchange reaction EX_cmp_e_boundary with default bounds for boundary metabolite: cmp_e_boundary.\n",
+      "Adding exchange reaction EX_co2_e_boundary with default bounds for boundary metabolite: co2_e_boundary.\n",
+      "Adding exchange reaction EX_cobalt2_e_boundary with default bounds for boundary metabolite: cobalt2_e_boundary.\n",
+      "Adding exchange reaction EX_colipa_e_boundary with default bounds for boundary metabolite: colipa_e_boundary.\n",
+      "Adding exchange reaction EX_cpgn_e_boundary with default bounds for boundary metabolite: cpgn_e_boundary.\n",
+      "Adding exchange reaction EX_cpgn__un_e_boundary with default bounds for boundary metabolite: cpgn__un_e_boundary.\n",
+      "Adding exchange reaction EX_crn_e_boundary with default bounds for boundary metabolite: crn_e_boundary.\n",
+      "Adding exchange reaction EX_csn_e_boundary with default bounds for boundary metabolite: csn_e_boundary.\n",
+      "Adding exchange reaction EX_cu2_e_boundary with default bounds for boundary metabolite: cu2_e_boundary.\n",
+      "Adding exchange reaction EX_cu_e_boundary with default bounds for boundary metabolite: cu_e_boundary.\n",
+      "Adding exchange reaction EX_cyan_e_boundary with default bounds for boundary metabolite: cyan_e_boundary.\n",
+      "Adding exchange reaction EX_cynt_e_boundary with default bounds for boundary metabolite: cynt_e_boundary.\n",
+      "Adding exchange reaction EX_cys__D_e_boundary with default bounds for boundary metabolite: cys__D_e_boundary.\n",
+      "Adding exchange reaction EX_cys__L_e_boundary with default bounds for boundary metabolite: cys__L_e_boundary.\n",
+      "Adding exchange reaction EX_cysi__L_e_boundary with default bounds for boundary metabolite: cysi__L_e_boundary.\n",
+      "Adding exchange reaction EX_cytd_e_boundary with default bounds for boundary metabolite: cytd_e_boundary.\n",
+      "Adding exchange reaction EX_dad__2_e_boundary with default bounds for boundary metabolite: dad__2_e_boundary.\n",
+      "Adding exchange reaction EX_damp_e_boundary with default bounds for boundary metabolite: damp_e_boundary.\n",
+      "Adding exchange reaction EX_dca_e_boundary with default bounds for boundary metabolite: dca_e_boundary.\n",
+      "Adding exchange reaction EX_dcmp_e_boundary with default bounds for boundary metabolite: dcmp_e_boundary.\n",
+      "Adding exchange reaction EX_dcyt_e_boundary with default bounds for boundary metabolite: dcyt_e_boundary.\n",
+      "Adding exchange reaction EX_ddca_e_boundary with default bounds for boundary metabolite: ddca_e_boundary.\n",
+      "Adding exchange reaction EX_dgmp_e_boundary with default bounds for boundary metabolite: dgmp_e_boundary.\n",
+      "Adding exchange reaction EX_dgsn_e_boundary with default bounds for boundary metabolite: dgsn_e_boundary.\n",
+      "Adding exchange reaction EX_dha_e_boundary with default bounds for boundary metabolite: dha_e_boundary.\n",
+      "Adding exchange reaction EX_dimp_e_boundary with default bounds for boundary metabolite: dimp_e_boundary.\n",
+      "Adding exchange reaction EX_din_e_boundary with default bounds for boundary metabolite: din_e_boundary.\n",
+      "Adding exchange reaction EX_dms_e_boundary with default bounds for boundary metabolite: dms_e_boundary.\n",
+      "Adding exchange reaction EX_dmso_e_boundary with default bounds for boundary metabolite: dmso_e_boundary.\n",
+      "Adding exchange reaction EX_dopa_e_boundary with default bounds for boundary metabolite: dopa_e_boundary.\n",
+      "Adding exchange reaction EX_dtmp_e_boundary with default bounds for boundary metabolite: dtmp_e_boundary.\n",
+      "Adding exchange reaction EX_dump_e_boundary with default bounds for boundary metabolite: dump_e_boundary.\n",
+      "Adding exchange reaction EX_duri_e_boundary with default bounds for boundary metabolite: duri_e_boundary.\n",
+      "Adding exchange reaction EX_eca4colipa_e_boundary with default bounds for boundary metabolite: eca4colipa_e_boundary.\n",
+      "Adding exchange reaction EX_enlipa_e_boundary with default bounds for boundary metabolite: enlipa_e_boundary.\n",
+      "Adding exchange reaction EX_enter_e_boundary with default bounds for boundary metabolite: enter_e_boundary.\n",
+      "Adding exchange reaction EX_etha_e_boundary with default bounds for boundary metabolite: etha_e_boundary.\n",
+      "Adding exchange reaction EX_ethso3_e_boundary with default bounds for boundary metabolite: ethso3_e_boundary.\n",
+      "Adding exchange reaction EX_etoh_e_boundary with default bounds for boundary metabolite: etoh_e_boundary.\n",
+      "Adding exchange reaction EX_f6p_e_boundary with default bounds for boundary metabolite: f6p_e_boundary.\n",
+      "Adding exchange reaction EX_fald_e_boundary with default bounds for boundary metabolite: fald_e_boundary.\n",
+      "Adding exchange reaction EX_fe2_e_boundary with default bounds for boundary metabolite: fe2_e_boundary.\n",
+      "Adding exchange reaction EX_fe3_e_boundary with default bounds for boundary metabolite: fe3_e_boundary.\n",
+      "Adding exchange reaction EX_fe3dcit_e_boundary with default bounds for boundary metabolite: fe3dcit_e_boundary.\n",
+      "Adding exchange reaction EX_fe3dhbzs_e_boundary with default bounds for boundary metabolite: fe3dhbzs_e_boundary.\n",
+      "Adding exchange reaction EX_fe3hox_e_boundary with default bounds for boundary metabolite: fe3hox_e_boundary.\n",
+      "Adding exchange reaction EX_fe3hox__un_e_boundary with default bounds for boundary metabolite: fe3hox__un_e_boundary.\n",
+      "Adding exchange reaction EX_fecrm_e_boundary with default bounds for boundary metabolite: fecrm_e_boundary.\n",
+      "Adding exchange reaction EX_fecrm__un_e_boundary with default bounds for boundary metabolite: fecrm__un_e_boundary.\n",
+      "Adding exchange reaction EX_feenter_e_boundary with default bounds for boundary metabolite: feenter_e_boundary.\n",
+      "Adding exchange reaction EX_feoxam_e_boundary with default bounds for boundary metabolite: feoxam_e_boundary.\n",
+      "Adding exchange reaction EX_feoxam__un_e_boundary with default bounds for boundary metabolite: feoxam__un_e_boundary.\n",
+      "Adding exchange reaction EX_for_e_boundary with default bounds for boundary metabolite: for_e_boundary.\n",
+      "Adding exchange reaction EX_fru_e_boundary with default bounds for boundary metabolite: fru_e_boundary.\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Adding exchange reaction EX_frulys_e_boundary with default bounds for boundary metabolite: frulys_e_boundary.\n",
+      "Adding exchange reaction EX_fruur_e_boundary with default bounds for boundary metabolite: fruur_e_boundary.\n",
+      "Adding exchange reaction EX_fuc__L_e_boundary with default bounds for boundary metabolite: fuc__L_e_boundary.\n",
+      "Adding exchange reaction EX_fum_e_boundary with default bounds for boundary metabolite: fum_e_boundary.\n",
+      "Adding exchange reaction EX_g1p_e_boundary with default bounds for boundary metabolite: g1p_e_boundary.\n",
+      "Adding exchange reaction EX_g3pc_e_boundary with default bounds for boundary metabolite: g3pc_e_boundary.\n",
+      "Adding exchange reaction EX_g3pe_e_boundary with default bounds for boundary metabolite: g3pe_e_boundary.\n",
+      "Adding exchange reaction EX_g3pg_e_boundary with default bounds for boundary metabolite: g3pg_e_boundary.\n",
+      "Adding exchange reaction EX_g3pi_e_boundary with default bounds for boundary metabolite: g3pi_e_boundary.\n",
+      "Adding exchange reaction EX_g3ps_e_boundary with default bounds for boundary metabolite: g3ps_e_boundary.\n",
+      "Adding exchange reaction EX_g6p_e_boundary with default bounds for boundary metabolite: g6p_e_boundary.\n",
+      "Adding exchange reaction EX_gal1p_e_boundary with default bounds for boundary metabolite: gal1p_e_boundary.\n",
+      "Adding exchange reaction EX_gal__bD_e_boundary with default bounds for boundary metabolite: gal__bD_e_boundary.\n",
+      "Adding exchange reaction EX_gal_e_boundary with default bounds for boundary metabolite: gal_e_boundary.\n",
+      "Adding exchange reaction EX_galct__D_e_boundary with default bounds for boundary metabolite: galct__D_e_boundary.\n",
+      "Adding exchange reaction EX_galctn__D_e_boundary with default bounds for boundary metabolite: galctn__D_e_boundary.\n",
+      "Adding exchange reaction EX_galctn__L_e_boundary with default bounds for boundary metabolite: galctn__L_e_boundary.\n",
+      "Adding exchange reaction EX_galt_e_boundary with default bounds for boundary metabolite: galt_e_boundary.\n",
+      "Adding exchange reaction EX_galur_e_boundary with default bounds for boundary metabolite: galur_e_boundary.\n",
+      "Adding exchange reaction EX_gam6p_e_boundary with default bounds for boundary metabolite: gam6p_e_boundary.\n",
+      "Adding exchange reaction EX_gam_e_boundary with default bounds for boundary metabolite: gam_e_boundary.\n",
+      "Adding exchange reaction EX_gbbtn_e_boundary with default bounds for boundary metabolite: gbbtn_e_boundary.\n",
+      "Adding exchange reaction EX_gdp_e_boundary with default bounds for boundary metabolite: gdp_e_boundary.\n",
+      "Adding exchange reaction EX_glc__D_e_boundary with default bounds for boundary metabolite: glc__D_e_boundary.\n",
+      "Adding exchange reaction EX_glcn_e_boundary with default bounds for boundary metabolite: glcn_e_boundary.\n",
+      "Adding exchange reaction EX_glcr_e_boundary with default bounds for boundary metabolite: glcr_e_boundary.\n",
+      "Adding exchange reaction EX_glcur1p_e_boundary with default bounds for boundary metabolite: glcur1p_e_boundary.\n",
+      "Adding exchange reaction EX_glcur_e_boundary with default bounds for boundary metabolite: glcur_e_boundary.\n",
+      "Adding exchange reaction EX_gln__L_e_boundary with default bounds for boundary metabolite: gln__L_e_boundary.\n",
+      "Adding exchange reaction EX_glu__L_e_boundary with default bounds for boundary metabolite: glu__L_e_boundary.\n",
+      "Adding exchange reaction EX_gly_e_boundary with default bounds for boundary metabolite: gly_e_boundary.\n",
+      "Adding exchange reaction EX_glyald_e_boundary with default bounds for boundary metabolite: glyald_e_boundary.\n",
+      "Adding exchange reaction EX_glyb_e_boundary with default bounds for boundary metabolite: glyb_e_boundary.\n",
+      "Adding exchange reaction EX_glyc2p_e_boundary with default bounds for boundary metabolite: glyc2p_e_boundary.\n",
+      "Adding exchange reaction EX_glyc3p_e_boundary with default bounds for boundary metabolite: glyc3p_e_boundary.\n",
+      "Adding exchange reaction EX_glyc__R_e_boundary with default bounds for boundary metabolite: glyc__R_e_boundary.\n",
+      "Adding exchange reaction EX_glyc_e_boundary with default bounds for boundary metabolite: glyc_e_boundary.\n",
+      "Adding exchange reaction EX_glyclt_e_boundary with default bounds for boundary metabolite: glyclt_e_boundary.\n",
+      "Adding exchange reaction EX_gmp_e_boundary with default bounds for boundary metabolite: gmp_e_boundary.\n",
+      "Adding exchange reaction EX_gsn_e_boundary with default bounds for boundary metabolite: gsn_e_boundary.\n",
+      "Adding exchange reaction EX_gthox_e_boundary with default bounds for boundary metabolite: gthox_e_boundary.\n",
+      "Adding exchange reaction EX_gthrd_e_boundary with default bounds for boundary metabolite: gthrd_e_boundary.\n",
+      "Adding exchange reaction EX_gtp_e_boundary with default bounds for boundary metabolite: gtp_e_boundary.\n",
+      "Adding exchange reaction EX_gua_e_boundary with default bounds for boundary metabolite: gua_e_boundary.\n",
+      "Adding exchange reaction EX_h2_e_boundary with default bounds for boundary metabolite: h2_e_boundary.\n",
+      "Adding exchange reaction EX_h2o2_e_boundary with default bounds for boundary metabolite: h2o2_e_boundary.\n",
+      "Adding exchange reaction EX_h2o_e_boundary with default bounds for boundary metabolite: h2o_e_boundary.\n",
+      "Adding exchange reaction EX_h2s_e_boundary with default bounds for boundary metabolite: h2s_e_boundary.\n",
+      "Adding exchange reaction EX_h_e_boundary with default bounds for boundary metabolite: h_e_boundary.\n",
+      "Adding exchange reaction EX_hacolipa_e_boundary with default bounds for boundary metabolite: hacolipa_e_boundary.\n",
+      "Adding exchange reaction EX_halipa_e_boundary with default bounds for boundary metabolite: halipa_e_boundary.\n",
+      "Adding exchange reaction EX_hdca_e_boundary with default bounds for boundary metabolite: hdca_e_boundary.\n",
+      "Adding exchange reaction EX_hdcea_e_boundary with default bounds for boundary metabolite: hdcea_e_boundary.\n",
+      "Adding exchange reaction EX_hg2_e_boundary with default bounds for boundary metabolite: hg2_e_boundary.\n",
+      "Adding exchange reaction EX_his__L_e_boundary with default bounds for boundary metabolite: his__L_e_boundary.\n",
+      "Adding exchange reaction EX_hom__L_e_boundary with default bounds for boundary metabolite: hom__L_e_boundary.\n",
+      "Adding exchange reaction EX_hxa_e_boundary with default bounds for boundary metabolite: hxa_e_boundary.\n",
+      "Adding exchange reaction EX_hxan_e_boundary with default bounds for boundary metabolite: hxan_e_boundary.\n",
+      "Adding exchange reaction EX_idon__L_e_boundary with default bounds for boundary metabolite: idon__L_e_boundary.\n",
+      "Adding exchange reaction EX_ile__L_e_boundary with default bounds for boundary metabolite: ile__L_e_boundary.\n",
+      "Adding exchange reaction EX_imp_e_boundary with default bounds for boundary metabolite: imp_e_boundary.\n",
+      "Adding exchange reaction EX_indole_e_boundary with default bounds for boundary metabolite: indole_e_boundary.\n",
+      "Adding exchange reaction EX_inost_e_boundary with default bounds for boundary metabolite: inost_e_boundary.\n",
+      "Adding exchange reaction EX_ins_e_boundary with default bounds for boundary metabolite: ins_e_boundary.\n",
+      "Adding exchange reaction EX_isetac_e_boundary with default bounds for boundary metabolite: isetac_e_boundary.\n",
+      "Adding exchange reaction EX_k_e_boundary with default bounds for boundary metabolite: k_e_boundary.\n",
+      "Adding exchange reaction EX_kdo2lipid4_e_boundary with default bounds for boundary metabolite: kdo2lipid4_e_boundary.\n",
+      "Adding exchange reaction EX_lac__D_e_boundary with default bounds for boundary metabolite: lac__D_e_boundary.\n",
+      "Adding exchange reaction EX_lac__L_e_boundary with default bounds for boundary metabolite: lac__L_e_boundary.\n",
+      "Adding exchange reaction EX_lcts_e_boundary with default bounds for boundary metabolite: lcts_e_boundary.\n",
+      "Adding exchange reaction EX_leu__L_e_boundary with default bounds for boundary metabolite: leu__L_e_boundary.\n",
+      "Adding exchange reaction EX_lipa__cold_e_boundary with default bounds for boundary metabolite: lipa__cold_e_boundary.\n",
+      "Adding exchange reaction EX_lipa_e_boundary with default bounds for boundary metabolite: lipa_e_boundary.\n",
+      "Adding exchange reaction EX_lys__L_e_boundary with default bounds for boundary metabolite: lys__L_e_boundary.\n",
+      "Adding exchange reaction EX_lyx__L_e_boundary with default bounds for boundary metabolite: lyx__L_e_boundary.\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Adding exchange reaction EX_mal__D_e_boundary with default bounds for boundary metabolite: mal__D_e_boundary.\n",
+      "Adding exchange reaction EX_mal__L_e_boundary with default bounds for boundary metabolite: mal__L_e_boundary.\n",
+      "Adding exchange reaction EX_malt_e_boundary with default bounds for boundary metabolite: malt_e_boundary.\n",
+      "Adding exchange reaction EX_malthx_e_boundary with default bounds for boundary metabolite: malthx_e_boundary.\n",
+      "Adding exchange reaction EX_maltpt_e_boundary with default bounds for boundary metabolite: maltpt_e_boundary.\n",
+      "Adding exchange reaction EX_malttr_e_boundary with default bounds for boundary metabolite: malttr_e_boundary.\n",
+      "Adding exchange reaction EX_maltttr_e_boundary with default bounds for boundary metabolite: maltttr_e_boundary.\n",
+      "Adding exchange reaction EX_man6p_e_boundary with default bounds for boundary metabolite: man6p_e_boundary.\n",
+      "Adding exchange reaction EX_man_e_boundary with default bounds for boundary metabolite: man_e_boundary.\n",
+      "Adding exchange reaction EX_manglyc_e_boundary with default bounds for boundary metabolite: manglyc_e_boundary.\n",
+      "Adding exchange reaction EX_melib_e_boundary with default bounds for boundary metabolite: melib_e_boundary.\n",
+      "Adding exchange reaction EX_met__D_e_boundary with default bounds for boundary metabolite: met__D_e_boundary.\n",
+      "Adding exchange reaction EX_met__L_e_boundary with default bounds for boundary metabolite: met__L_e_boundary.\n",
+      "Adding exchange reaction EX_metsox__R__L_e_boundary with default bounds for boundary metabolite: metsox__R__L_e_boundary.\n",
+      "Adding exchange reaction EX_metsox__S__L_e_boundary with default bounds for boundary metabolite: metsox__S__L_e_boundary.\n",
+      "Adding exchange reaction EX_mg2_e_boundary with default bounds for boundary metabolite: mg2_e_boundary.\n",
+      "Adding exchange reaction EX_minohp_e_boundary with default bounds for boundary metabolite: minohp_e_boundary.\n",
+      "Adding exchange reaction EX_mmet_e_boundary with default bounds for boundary metabolite: mmet_e_boundary.\n",
+      "Adding exchange reaction EX_mn2_e_boundary with default bounds for boundary metabolite: mn2_e_boundary.\n",
+      "Adding exchange reaction EX_mnl_e_boundary with default bounds for boundary metabolite: mnl_e_boundary.\n",
+      "Adding exchange reaction EX_mobd_e_boundary with default bounds for boundary metabolite: mobd_e_boundary.\n",
+      "Adding exchange reaction EX_mso3_e_boundary with default bounds for boundary metabolite: mso3_e_boundary.\n",
+      "Adding exchange reaction EX_n2o_e_boundary with default bounds for boundary metabolite: n2o_e_boundary.\n",
+      "Adding exchange reaction EX_na1_e_boundary with default bounds for boundary metabolite: na1_e_boundary.\n",
+      "Adding exchange reaction EX_nac_e_boundary with default bounds for boundary metabolite: nac_e_boundary.\n",
+      "Adding exchange reaction EX_nh4_e_boundary with default bounds for boundary metabolite: nh4_e_boundary.\n",
+      "Adding exchange reaction EX_ni2_e_boundary with default bounds for boundary metabolite: ni2_e_boundary.\n",
+      "Adding exchange reaction EX_nmn_e_boundary with default bounds for boundary metabolite: nmn_e_boundary.\n",
+      "Adding exchange reaction EX_no2_e_boundary with default bounds for boundary metabolite: no2_e_boundary.\n",
+      "Adding exchange reaction EX_no3_e_boundary with default bounds for boundary metabolite: no3_e_boundary.\n",
+      "Adding exchange reaction EX_no_e_boundary with default bounds for boundary metabolite: no_e_boundary.\n",
+      "Adding exchange reaction EX_o2_e_boundary with default bounds for boundary metabolite: o2_e_boundary.\n",
+      "Adding exchange reaction EX_o2s_e_boundary with default bounds for boundary metabolite: o2s_e_boundary.\n",
+      "Adding exchange reaction EX_ocdca_e_boundary with default bounds for boundary metabolite: ocdca_e_boundary.\n",
+      "Adding exchange reaction EX_ocdcea_e_boundary with default bounds for boundary metabolite: ocdcea_e_boundary.\n",
+      "Adding exchange reaction EX_octa_e_boundary with default bounds for boundary metabolite: octa_e_boundary.\n",
+      "Adding exchange reaction EX_orn_e_boundary with default bounds for boundary metabolite: orn_e_boundary.\n",
+      "Adding exchange reaction EX_orot_e_boundary with default bounds for boundary metabolite: orot_e_boundary.\n",
+      "Adding exchange reaction EX_oaa_e_boundary with default bounds for boundary metabolite: oaa_e_boundary.\n",
+      "Adding exchange reaction EX_pacald_e_boundary with default bounds for boundary metabolite: pacald_e_boundary.\n",
+      "Adding exchange reaction EX_peamn_e_boundary with default bounds for boundary metabolite: peamn_e_boundary.\n",
+      "Adding exchange reaction EX_phe__L_e_boundary with default bounds for boundary metabolite: phe__L_e_boundary.\n",
+      "Adding exchange reaction EX_pheme_e_boundary with default bounds for boundary metabolite: pheme_e_boundary.\n",
+      "Adding exchange reaction EX_pi_e_boundary with default bounds for boundary metabolite: pi_e_boundary.\n",
+      "Adding exchange reaction EX_pnto__R_e_boundary with default bounds for boundary metabolite: pnto__R_e_boundary.\n",
+      "Adding exchange reaction EX_ppa_e_boundary with default bounds for boundary metabolite: ppa_e_boundary.\n",
+      "Adding exchange reaction EX_ppal_e_boundary with default bounds for boundary metabolite: ppal_e_boundary.\n",
+      "Adding exchange reaction EX_pppn_e_boundary with default bounds for boundary metabolite: pppn_e_boundary.\n",
+      "Adding exchange reaction EX_ppt_e_boundary with default bounds for boundary metabolite: ppt_e_boundary.\n",
+      "Adding exchange reaction EX_pro__L_e_boundary with default bounds for boundary metabolite: pro__L_e_boundary.\n",
+      "Adding exchange reaction EX_progly_e_boundary with default bounds for boundary metabolite: progly_e_boundary.\n",
+      "Adding exchange reaction EX_psclys_e_boundary with default bounds for boundary metabolite: psclys_e_boundary.\n",
+      "Adding exchange reaction EX_pser__L_e_boundary with default bounds for boundary metabolite: pser__L_e_boundary.\n",
+      "Adding exchange reaction EX_ptrc_e_boundary with default bounds for boundary metabolite: ptrc_e_boundary.\n",
+      "Adding exchange reaction EX_pyr_e_boundary with default bounds for boundary metabolite: pyr_e_boundary.\n",
+      "Adding exchange reaction EX_r5p_e_boundary with default bounds for boundary metabolite: r5p_e_boundary.\n",
+      "Adding exchange reaction EX_rib__D_e_boundary with default bounds for boundary metabolite: rib__D_e_boundary.\n",
+      "Adding exchange reaction EX_rmn_e_boundary with default bounds for boundary metabolite: rmn_e_boundary.\n",
+      "Adding exchange reaction EX_sbt__D_e_boundary with default bounds for boundary metabolite: sbt__D_e_boundary.\n",
+      "Adding exchange reaction EX_ser__D_e_boundary with default bounds for boundary metabolite: ser__D_e_boundary.\n",
+      "Adding exchange reaction EX_ser__L_e_boundary with default bounds for boundary metabolite: ser__L_e_boundary.\n",
+      "Adding exchange reaction EX_skm_e_boundary with default bounds for boundary metabolite: skm_e_boundary.\n",
+      "Adding exchange reaction EX_so2_e_boundary with default bounds for boundary metabolite: so2_e_boundary.\n",
+      "Adding exchange reaction EX_so3_e_boundary with default bounds for boundary metabolite: so3_e_boundary.\n",
+      "Adding exchange reaction EX_so4_e_boundary with default bounds for boundary metabolite: so4_e_boundary.\n",
+      "Adding exchange reaction EX_spmd_e_boundary with default bounds for boundary metabolite: spmd_e_boundary.\n",
+      "Adding exchange reaction EX_succ_e_boundary with default bounds for boundary metabolite: succ_e_boundary.\n",
+      "Adding exchange reaction EX_sucr_e_boundary with default bounds for boundary metabolite: sucr_e_boundary.\n",
+      "Adding exchange reaction EX_sulfac_e_boundary with default bounds for boundary metabolite: sulfac_e_boundary.\n",
+      "Adding exchange reaction EX_tartr__L_e_boundary with default bounds for boundary metabolite: tartr__L_e_boundary.\n",
+      "Adding exchange reaction EX_taur_e_boundary with default bounds for boundary metabolite: taur_e_boundary.\n",
+      "Adding exchange reaction EX_tcynt_e_boundary with default bounds for boundary metabolite: tcynt_e_boundary.\n",
+      "Adding exchange reaction EX_thm_e_boundary with default bounds for boundary metabolite: thm_e_boundary.\n",
+      "Adding exchange reaction EX_thr__L_e_boundary with default bounds for boundary metabolite: thr__L_e_boundary.\n",
+      "Adding exchange reaction EX_thrp_e_boundary with default bounds for boundary metabolite: thrp_e_boundary.\n",
+      "Adding exchange reaction EX_thym_e_boundary with default bounds for boundary metabolite: thym_e_boundary.\n",
+      "Adding exchange reaction EX_thymd_e_boundary with default bounds for boundary metabolite: thymd_e_boundary.\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Adding exchange reaction EX_tma_e_boundary with default bounds for boundary metabolite: tma_e_boundary.\n",
+      "Adding exchange reaction EX_tmao_e_boundary with default bounds for boundary metabolite: tmao_e_boundary.\n",
+      "Adding exchange reaction EX_tre_e_boundary with default bounds for boundary metabolite: tre_e_boundary.\n",
+      "Adding exchange reaction EX_trp__L_e_boundary with default bounds for boundary metabolite: trp__L_e_boundary.\n",
+      "Adding exchange reaction EX_tsul_e_boundary with default bounds for boundary metabolite: tsul_e_boundary.\n",
+      "Adding exchange reaction EX_ttdca_e_boundary with default bounds for boundary metabolite: ttdca_e_boundary.\n",
+      "Adding exchange reaction EX_ttdcea_e_boundary with default bounds for boundary metabolite: ttdcea_e_boundary.\n",
+      "Adding exchange reaction EX_tungs_e_boundary with default bounds for boundary metabolite: tungs_e_boundary.\n",
+      "Adding exchange reaction EX_tym_e_boundary with default bounds for boundary metabolite: tym_e_boundary.\n",
+      "Adding exchange reaction EX_tyr__L_e_boundary with default bounds for boundary metabolite: tyr__L_e_boundary.\n",
+      "Adding exchange reaction EX_tyrp_e_boundary with default bounds for boundary metabolite: tyrp_e_boundary.\n",
+      "Adding exchange reaction EX_uacgam_e_boundary with default bounds for boundary metabolite: uacgam_e_boundary.\n",
+      "Adding exchange reaction EX_udpacgal_e_boundary with default bounds for boundary metabolite: udpacgal_e_boundary.\n",
+      "Adding exchange reaction EX_udpg_e_boundary with default bounds for boundary metabolite: udpg_e_boundary.\n",
+      "Adding exchange reaction EX_udpgal_e_boundary with default bounds for boundary metabolite: udpgal_e_boundary.\n",
+      "Adding exchange reaction EX_udpglcur_e_boundary with default bounds for boundary metabolite: udpglcur_e_boundary.\n",
+      "Adding exchange reaction EX_ump_e_boundary with default bounds for boundary metabolite: ump_e_boundary.\n",
+      "Adding exchange reaction EX_ura_e_boundary with default bounds for boundary metabolite: ura_e_boundary.\n",
+      "Adding exchange reaction EX_urea_e_boundary with default bounds for boundary metabolite: urea_e_boundary.\n",
+      "Adding exchange reaction EX_uri_e_boundary with default bounds for boundary metabolite: uri_e_boundary.\n",
+      "Adding exchange reaction EX_val__L_e_boundary with default bounds for boundary metabolite: val__L_e_boundary.\n",
+      "Adding exchange reaction EX_xan_e_boundary with default bounds for boundary metabolite: xan_e_boundary.\n",
+      "Adding exchange reaction EX_xmp_e_boundary with default bounds for boundary metabolite: xmp_e_boundary.\n",
+      "Adding exchange reaction EX_xtsn_e_boundary with default bounds for boundary metabolite: xtsn_e_boundary.\n",
+      "Adding exchange reaction EX_xyl__D_e_boundary with default bounds for boundary metabolite: xyl__D_e_boundary.\n",
+      "Adding exchange reaction EX_xylu__L_e_boundary with default bounds for boundary metabolite: xylu__L_e_boundary.\n",
+      "Adding exchange reaction EX_zn2_e_boundary with default bounds for boundary metabolite: zn2_e_boundary.\n",
+      "Adding exchange reaction EX_AEP_e_boundary with default bounds for boundary metabolite: AEP_e_boundary.\n",
+      "Adding exchange reaction EX_4hoxpac_e_boundary with default bounds for boundary metabolite: 4hoxpac_e_boundary.\n",
+      "Adding exchange reaction EX_remnant1_e_boundary with default bounds for boundary metabolite: remnant1_e_boundary.\n",
+      "Adding exchange reaction EX_colipa20Oag_e_boundary with default bounds for boundary metabolite: colipa20Oag_e_boundary.\n",
+      "Adding exchange reaction EX_salchs4_e_boundary with default bounds for boundary metabolite: salchs4_e_boundary.\n",
+      "Adding exchange reaction EX_salchs4fe_e_boundary with default bounds for boundary metabolite: salchs4fe_e_boundary.\n",
+      "Adding exchange reaction EX_salchsx_e_boundary with default bounds for boundary metabolite: salchsx_e_boundary.\n",
+      "Adding exchange reaction EX_tag__D_e_boundary with default bounds for boundary metabolite: tag__D_e_boundary.\n",
+      "Adding exchange reaction EX_airs_e_boundary with default bounds for boundary metabolite: airs_e_boundary.\n",
+      "Adding exchange reaction EX_pep_e_boundary with default bounds for boundary metabolite: pep_e_boundary.\n",
+      "Adding exchange reaction EX_2pg_e_boundary with default bounds for boundary metabolite: 2pg_e_boundary.\n",
+      "Adding exchange reaction EX_3pg_e_boundary with default bounds for boundary metabolite: 3pg_e_boundary.\n",
+      "Adding exchange reaction EX_tet_e_boundary with default bounds for boundary metabolite: tet_e_boundary.\n",
+      "Adding exchange reaction EX_foam_e_boundary with default bounds for boundary metabolite: foam_e_boundary.\n",
+      "Adding exchange reaction EX_tartr__D_e_boundary with default bounds for boundary metabolite: tartr__D_e_boundary.\n",
+      "Adding exchange reaction EX_4abz_e_boundary with default bounds for boundary metabolite: 4abz_e_boundary.\n",
+      "Adding exchange reaction EX_feroxB_e_boundary with default bounds for boundary metabolite: feroxB_e_boundary.\n",
+      "Adding exchange reaction EX_feroxBfe_e_boundary with default bounds for boundary metabolite: feroxBfe_e_boundary.\n",
+      "Adding exchange reaction EX_feroxE_e_boundary with default bounds for boundary metabolite: feroxE_e_boundary.\n",
+      "Adding exchange reaction EX_feroxEfe_e_boundary with default bounds for boundary metabolite: feroxEfe_e_boundary.\n",
+      "Adding exchange reaction EX_feroxG_e_boundary with default bounds for boundary metabolite: feroxG_e_boundary.\n",
+      "Adding exchange reaction EX_feroxGfe_e_boundary with default bounds for boundary metabolite: feroxGfe_e_boundary.\n",
+      "Adding exchange reaction EX_drib_e_boundary with default bounds for boundary metabolite: drib_e_boundary.\n",
+      "Adding exchange reaction EX_dxyl_e_boundary with default bounds for boundary metabolite: dxyl_e_boundary.\n",
+      "Adding exchange reaction EX_salchs2fe_e_boundary with default bounds for boundary metabolite: salchs2fe_e_boundary.\n",
+      "Adding exchange reaction EX_rnam_e_boundary with default bounds for boundary metabolite: rnam_e_boundary.\n",
+      "Adding exchange reaction EX_colipaOA_e_boundary with default bounds for boundary metabolite: colipaOA_e_boundary.\n",
+      "Adding exchange reaction EX_udcpo4_e_boundary with default bounds for boundary metabolite: udcpo4_e_boundary.\n",
+      "Adding exchange reaction EX_tcb_e_boundary with default bounds for boundary metabolite: tcb_e_boundary.\n",
+      "Adding exchange reaction EX_fe3dhbzs3_e_boundary with default bounds for boundary metabolite: fe3dhbzs3_e_boundary.\n",
+      "Adding exchange reaction EX_23dhbzs3_e_boundary with default bounds for boundary metabolite: 23dhbzs3_e_boundary.\n",
+      "Adding exchange reaction EX_guln__L_e_boundary with default bounds for boundary metabolite: guln__L_e_boundary.\n",
+      "Adding exchange reaction EX_udcpo5_e_boundary with default bounds for boundary metabolite: udcpo5_e_boundary.\n",
+      "Adding exchange reaction EX_4hthr_e_boundary with default bounds for boundary metabolite: 4hthr_e_boundary.\n",
+      "Adding exchange reaction EX_salchs2_e_boundary with default bounds for boundary metabolite: salchs2_e_boundary.\n",
+      "Adding exchange reaction EX_tton_e_boundary with default bounds for boundary metabolite: tton_e_boundary.\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR120tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR140tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR141tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR160tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR161tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR180tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12DGR181tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C181 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDRtex \" R Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDRtex \" R Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDRtpp \" R Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDRtpp \" R Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDStex \" S Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDStex \" S Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDStpp \" S Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDStpp \" S Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_14GLUCANabcpp \"1 4 alpha D glucan transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_14GLUCANabcpp \"1 4 alpha D glucan transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_14GLUCANtexi \"1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_14GLUCANtexi \"1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23CAMPtex \"23cAMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23CAMPtex \"23cAMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23CCMPtex \"23cCMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23CCMPtex \"23cCMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23CGMPtex \"23cGMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23CGMPtex \"23cGMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23CUMPtex \"23cUMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23CUMPtex \"23cUMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23DAPPAt2pp \"2 3 diaminopropionate transport in via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23DAPPAtex \"2 3 diaminopropionate transport via diffusion\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23DAPPAtex \"2 3 diaminopropionate transport via diffusion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23PDE2pp \"2 3 cyclic nucleotide phosphodiesterase UMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23PDE2pp \"2 3 cyclic nucleotide phosphodiesterase UMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23PDE4pp \"2 3 cyclic nucleotide phosphodiesterase CMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23PDE4pp \"2 3 cyclic nucleotide phosphodiesterase CMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23PDE7pp \"2 3 cyclic nucleotide phosphodiesterase AMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23PDE7pp \"2 3 cyclic nucleotide phosphodiesterase AMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_23PDE9pp \"2 3 cyclic nucleotide phosphodiesterase GMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_23PDE9pp \"2 3 cyclic nucleotide phosphodiesterase GMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_26DAHtex \"meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_26DAHtex \"meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA120tipp \"2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA120tipp \"2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA140tipp \"2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA140tipp \"2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA141tipp \"2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA141tipp \"2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA160tipp \"2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA160tipp \"2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA161tipp \"2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA161tipp \"2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA180tipp \"2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA180tipp \"2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPA181tipp \"2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPA181tipp \"2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE120tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE120tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE140tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE140tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE141tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE141tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE160tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE160tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE161tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE161tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE180tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE180tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPE181tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPE181tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT120 \"2 acyl glycerophospho ethanolamine acyltransferase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT120 \"2 acyl glycerophospho ethanolamine acyltransferase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT140 \"2 acyl glycerophospho ethanolamine acyltransferase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT140 \"2 acyl glycerophospho ethanolamine acyltransferase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT141 \"2 acyl glycerophospho ethanolamine acyltransferase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT141 \"2 acyl glycerophospho ethanolamine acyltransferase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT160 \"2 acyl glycerophospho ethanolamine acyltransferase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT160 \"2 acyl glycerophospho ethanolamine acyltransferase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT161 \"2 acyl glycerophospho ethanolamine acyltransferase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT161 \"2 acyl glycerophospho ethanolamine acyltransferase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT180 \"2 acyl glycerophospho ethanolamine acyltransferase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT180 \"2 acyl glycerophospho ethanolamine acyltransferase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPEAT181 \"2 acyl glycerophospho ethanolamine acyltransferase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPEAT181 \"2 acyl glycerophospho ethanolamine acyltransferase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG120tipp \"2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG120tipp \"2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG140tipp \"2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG140tipp \"2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG141tipp \"2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG141tipp \"2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG160tipp \"2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG160tipp \"2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG161tipp \"2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG161tipp \"2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG180tipp \"2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG180tipp \"2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPG181tipp \"2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPG181tipp \"2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT120 \"2 acyl glycerophospho glycerol acyltransferase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT120 \"2 acyl glycerophospho glycerol acyltransferase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT140 \"2 acyl glycerophospho glycerol acyltransferase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT140 \"2 acyl glycerophospho glycerol acyltransferase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT141 \"2 acyl glycerophospho glycerol acyltransferase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT141 \"2 acyl glycerophospho glycerol acyltransferase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT160 \"2 acyl glycerophospho glycerol acyltransferase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT160 \"2 acyl glycerophospho glycerol acyltransferase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT161 \"2 acyl glycerophospho glycerol acyltransferase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT161 \"2 acyl glycerophospho glycerol acyltransferase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT180 \"2 acyl glycerophospho glycerol acyltransferase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT180 \"2 acyl glycerophospho glycerol acyltransferase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2AGPGAT181 \"2 acyl glycerophospho glycerol acyltransferase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2AGPGAT181 \"2 acyl glycerophospho glycerol acyltransferase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2DGLCNRx \"2 dehydro D gluconate reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2DGLCNRx \"2 dehydro D gluconate reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2DGLCNRy \"2 dehydro D gluconate reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2DGLCNRy \"2 dehydro D gluconate reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2DGULRx \"2 dehydro L gulonate reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2DGULRx \"2 dehydro L gulonate reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2DGULRy \"2 dehydro L gulonate reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2DGULRy \"2 dehydro L gulonate reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2MAHMP \"2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2MAHMP \"2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_34dhpactex \"dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_34dhpactex \"dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3AMPtex \"3AMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3AMPtex \"3AMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3CMPtex \"3CMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3CMPtex \"3CMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3GMPtex \"3GMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3GMPtex \"3GMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD100 \"3 hydroxyacyl acyl carrier protein dehydratase n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD100 \"3 hydroxyacyl acyl carrier protein dehydratase n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD120 \"3 hydroxyacyl acyl carrier protein dehydratase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD120 \"3 hydroxyacyl acyl carrier protein dehydratase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD121 \"3 hydroxyacyl acyl carrier protein dehydratase n C121 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD121 \"3 hydroxyacyl acyl carrier protein dehydratase n C121 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD140 \"3 hydroxyacyl acyl carrier protein dehydratase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD140 \"3 hydroxyacyl acyl carrier protein dehydratase n C140 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD141 \"3 hydroxyacyl acyl carrier protein dehydratase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD141 \"3 hydroxyacyl acyl carrier protein dehydratase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD160 \"3 hydroxyacyl acyl carrier protein dehydratase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD160 \"3 hydroxyacyl acyl carrier protein dehydratase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD161 \"3 hydroxyacyl acyl carrier protein dehydratase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD161 \"3 hydroxyacyl acyl carrier protein dehydratase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD180 \"3 hydroxyacyl acyl carrier protein dehydratase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD180 \"3 hydroxyacyl acyl carrier protein dehydratase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD181 \"3 hydroxyacyl acyl carrier protein dehydratase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD181 \"3 hydroxyacyl acyl carrier protein dehydratase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD40 \"3 hydroxyacyl acyl carrier protein dehydratase n C40 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD40 \"3 hydroxyacyl acyl carrier protein dehydratase n C40 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD60 \"3 hydroxyacyl acyl carrier protein dehydratase n C60 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD60 \"3 hydroxyacyl acyl carrier protein dehydratase n C60 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3HAD80 \"3 hydroxyacyl acyl carrier protein dehydratase n C80 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3HAD80 \"3 hydroxyacyl acyl carrier protein dehydratase n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3KGK \"3 keto L gulonate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3KGK \"3 keto L gulonate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3NTD2pp \"3 nucleotidase UMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3NTD2pp \"3 nucleotidase UMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3NTD4pp \"3 nucleotidase CMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3NTD4pp \"3 nucleotidase CMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3NTD7pp \"3 nucleotidase AMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3NTD7pp \"3 nucleotidase AMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3NTD9pp \"3 nucleotidase GMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3NTD9pp \"3 nucleotidase GMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR100 \"3 oxoacyl acyl carrier protein reductase n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR100 \"3 oxoacyl acyl carrier protein reductase n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR120 \"3 oxoacyl acyl carrier protein reductase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR120 \"3 oxoacyl acyl carrier protein reductase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR121 \"3 oxoacyl acyl carrier protein reductase n C121 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR121 \"3 oxoacyl acyl carrier protein reductase n C121 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR140 \"3 oxoacyl acyl carrier protein reductase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR140 \"3 oxoacyl acyl carrier protein reductase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR141 \"3 oxoacyl acyl carrier protein reductase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR141 \"3 oxoacyl acyl carrier protein reductase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR160 \"3 oxoacyl acyl carrier protein reductase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR160 \"3 oxoacyl acyl carrier protein reductase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR161 \"3 oxoacyl acyl carrier protein reductase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR161 \"3 oxoacyl acyl carrier protein reductase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR180 \"3 oxoacyl acyl carrier protein reductase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR180 \"3 oxoacyl acyl carrier protein reductase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR181 \"3 oxoacyl acyl carrier protein reductase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR181 \"3 oxoacyl acyl carrier protein reductase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR40 \"3 oxoacyl acyl carrier protein reductase n C40 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR40 \"3 oxoacyl acyl carrier protein reductase n C40 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR60 \"3 oxoacyl acyl carrier protein reductase n C60 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR60 \"3 oxoacyl acyl carrier protein reductase n C60 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAR80 \"3 oxoacyl acyl carrier protein reductase n C80 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAR80 \"3 oxoacyl acyl carrier protein reductase n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS100 \"3 oxoacyl acyl carrier protein synthase n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS100 \"3 oxoacyl acyl carrier protein synthase n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS120 \"3 oxoacyl acyl carrier protein synthase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS120 \"3 oxoacyl acyl carrier protein synthase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS121 \"3 oxoacyl acyl carrier protein synthase n C121 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS121 \"3 oxoacyl acyl carrier protein synthase n C121 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS140 \"3 oxoacyl acyl carrier protein synthase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS140 \"3 oxoacyl acyl carrier protein synthase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS141 \"3 oxoacyl acyl carrier protein synthase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS141 \"3 oxoacyl acyl carrier protein synthase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS160 \"3 oxoacyl acyl carrier protein synthase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS160 \"3 oxoacyl acyl carrier protein synthase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS161 \"3 oxoacyl acyl carrier protein synthase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS161 \"3 oxoacyl acyl carrier protein synthase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS180 \"3 oxoacyl acyl carrier protein synthase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS180 \"3 oxoacyl acyl carrier protein synthase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS181 \"3 oxoacyl acyl carrier protein synthase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS181 \"3 oxoacyl acyl carrier protein synthase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS60 \"3 oxoacyl acyl carrier protein synthase n C60 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS60 \"3 oxoacyl acyl carrier protein synthase n C60 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3OAS80 \"3 oxoacyl acyl carrier protein synthase n C80 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3OAS80 \"3 oxoacyl acyl carrier protein synthase n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3PEPTabcpp \"tripeptide LalaDgluMdap transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3PEPTabcpp \"tripeptide LalaDgluMdap transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3PEPTtex \"LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3PEPTtex \"LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3UMPtex \"3UMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3UMPtex \"3UMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HOXPACDtex \"4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HOXPACDtex \"4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4PCP \"tetrapeptide L D carboxypeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4PCP \"tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4PCPpp \"tetrapeptide L D carboxypeptidase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4PEPTabcpp \"tetrapeptide LalaDgluMdapDala transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4PEPTabcpp \"tetrapeptide LalaDgluMdapDala transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4PEPTtex \"LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4PEPTtex \"LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5DGLCNR \"5 dehydro D gluconate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5DGLCNR \"5 dehydro D gluconate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5DGLCNt2rpp \"5 Dehydro D gluconate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5DGLCNt2rpp \"5 Dehydro D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5DGLCNtex \"5 Dehydro D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5DGLCNtex \"5 Dehydro D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5DOAN \"5 deoxyadenosine nuclosidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5DOAN \"5 deoxyadenosine nuclosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_A5PISO \"arabinose 5 phosphate isomerase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_A5PISO \"arabinose 5 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS1 \"acyl acyl carrier protein synthetase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS1 \"acyl acyl carrier protein synthetase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS2 \"acyl acyl carrier protein synthetase  n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS2 \"acyl acyl carrier protein synthetase  n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS3 \"acyl acyl carrier protein synthetase  n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS3 \"acyl acyl carrier protein synthetase  n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS4 \"acyl acyl carrier protein synthetase  n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS4 \"acyl acyl carrier protein synthetase  n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS5 \"acyl acyl carrier protein synthetase  n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS5 \"acyl acyl carrier protein synthetase  n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS6 \"acyl acyl carrier protein synthetase  n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS6 \"acyl acyl carrier protein synthetase  n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS7 \"acyl acyl carrier protein synthetase  n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS7 \"acyl acyl carrier protein synthetase  n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS8 \"acyl acyl carrier protein synthetase  n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS8 \"acyl acyl carrier protein synthetase  n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACPS9 \"acyl acyl carrier protein synthetase  n C80 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AACPS9 \"acyl acyl carrier protein synthetase  n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AACTOOR \"Aminoacetoneoxygen oxidoreductase deaminating flavin containing \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AAMYL \"alpha amylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AAMYL \"alpha amylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AAMYLpp \"alpha amylase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AAMYLpp \"alpha amylase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ABTA \"4 aminobutyrate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ABTA \"4 aminobutyrate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ABUTD \"Aminobutyraldehyde dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ABUTD \"Aminobutyraldehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ABUTt2pp \"4 aminobutyrate transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ABUTt2pp \"4 aminobutyrate transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ABUTtex \"4 aminobutyrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ABUTtex \"4 aminobutyrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACACtex \"acetoacetate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACACtex \"acetoacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACALD \"acetaldehyde dehydrogenase acetylating \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACALD \"acetaldehyde dehydrogenase acetylating \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACALDtex \"acetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACALDtex \"acetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACALDtpp \"acetaldehyde reversible transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACALDtpp \"acetaldehyde reversible transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACBIPGT \"Adenosyl cobinamide phosphate guanyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACBIPGT \"Adenosyl cobinamide phosphate guanyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACCOAC \"acetyl CoA carboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACCOAC \"acetyl CoA carboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACCOAL \"acetate CoA ligase ADP forming \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACCOAL \"acetate CoA ligase ADP forming \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAL1PPpp \"N acetyl D galactosamine 1 phosphatase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAL1Ptex \"N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAL1Ptex \"N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGALtex \"N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGALtex \"N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAM1PPpp \"N acetyl D glucosamine 1 phosphatase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAM1Ptex \"N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAM1Ptex \"N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAMK \"N acetylglucosamine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAMK \"N acetylglucosamine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAMT \"UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAMT \"UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAptspp \"N Acetyl D glucosamine transport via PEPPyr PTS  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAptspp \"N Acetyl D glucosamine transport via PEPPyr PTS  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGAtex \"N Acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGAtex \"N Acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGK \"acetylglutamate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGK \"acetylglutamate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACGS \"N acetylglutamate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACGS \"N acetylglutamate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACHBS \"2 aceto 2 hydroxybutanoate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACHBS \"2 aceto 2 hydroxybutanoate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACKr \"acetate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACKr \"acetate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACLS \"acetolactate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACLS \"acetolactate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACM6PH \"N acetylmuramate 6 phosphate hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACMAMUT \"UDP N acetyl D mannosaminuronic acid transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACMAMUT \"UDP N acetyl D mannosaminuronic acid transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACMANAptspp \"N acetyl D mannosamine transport via PTS  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACMANAptspp \"N acetyl D mannosamine transport via PTS  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACMANAtex \"N acetyl D mannosamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACMANAtex \"N acetyl D mannosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACMUMtex \"N acetylmuramate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACMUMtex \"N acetylmuramate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACNAMt2pp \"N acetylneuraminate proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACNAMt2pp \"N acetylneuraminate proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACNAMtex \"N acetylneuraminate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACNAMtex \"N acetylneuraminate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACNML \"N Acetylneuraminate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACNML \"N Acetylneuraminate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD1f \"acyl CoA dehydrogenase butanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD1f \"acyl CoA dehydrogenase butanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD2f \"acyl CoA dehydrogenase hexanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD2f \"acyl CoA dehydrogenase hexanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD3f \"acyl CoA dehydrogenase octanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD3f \"acyl CoA dehydrogenase octanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD4f \"acyl CoA dehydrogenase decanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD4f \"acyl CoA dehydrogenase decanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD5f \"acyl CoA dehydrogenase dodecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD5f \"acyl CoA dehydrogenase dodecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD6f \"acyl CoA dehydrogenase tetradecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD6f \"acyl CoA dehydrogenase tetradecanoyl CoA \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD7f \"acyl CoA dehydrogenase hexadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD7f \"acyl CoA dehydrogenase hexadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOAD8f \"acyl CoA dehydrogenase octadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOAD8f \"acyl CoA dehydrogenase octadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOATA \"Acetyl CoA ACP transacylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOATA \"Acetyl CoA ACP transacylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACODA \"acetylornithine deacetylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACODA \"acetylornithine deacetylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOLIPAtex \"arabinose modified core oligosaccharide lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACONIs \"aconitate isomerase spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACONIs \"aconitate isomerase spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACONTa \"aconitase half reaction A Citrate hydro lyase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACONTa \"aconitase half reaction A Citrate hydro lyase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACONTb \"aconitase half reaction B Isocitrate hydro lyase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACONTb \"aconitase half reaction B Isocitrate hydro lyase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACOTA \"acetylornithine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACOTA \"acetylornithine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACPS1 \"acyl carrier protein synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACPS1 \"acyl carrier protein synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACS \"acetyl CoA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACS \"acetyl CoA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACSERtex \"O Acetyl L serine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACSERtex \"O Acetyl L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACSERtpp \"O Acetyl L serine export via facilitated transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACSERtpp \"O Acetyl L serine export via facilitated transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACt2rpp \"acetate reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACt4pp \"NaAcetate symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACt4pp \"NaAcetate symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACtex \"Acetate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACtex \"Acetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADA \"Adenosine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADA \"Adenosine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADCL \"4 aminobenzoate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADCL \"4 aminobenzoate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADCS \"4 amino 4 deoxychorismate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADCS \"4 amino 4 deoxychorismate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADEt2rpp \"adenine transport via proton symport reversible  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADEt2rpp \"adenine transport via proton symport reversible  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADEtex \"adenine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADEtex \"adenine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADK1 \"adenylate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADK1 \"adenylate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADK3 \"adentylate kinase GTP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADK3 \"adentylate kinase GTP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADK4 \"adentylate kinase ITP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADK4 \"adentylate kinase ITP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADMDC \"adenosylmethionine decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADMDC \"adenosylmethionine decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNCYC \"adenylate cyclase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNCYC \"adenylate cyclase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNK1 \"adenosine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNK1 \"adenosine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNUC \"adenosine hydrolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNUC \"adenosine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNt2pp \"adenosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNt2pp \"adenosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNt2rpp \"adenosine transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNt2rpp \"adenosine transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADNtex \"adenosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADNtex \"adenosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBLabcpp \"Adenosylcobalamin transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBLabcpp \"Adenosylcobalamin transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBLtonex \"Adenosylcobalimin transport via ton system extermal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBLtonex \"Adenosylcobalimin transport via ton system extermal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADPRDP \"ADPribose diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADPRDP \"ADPribose diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADPT \"adenine phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADPT \"adenine phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADSK \"adenylyl sulfate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADSK \"adenylyl sulfate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADSL1r \"adenylsuccinate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADSL1r \"adenylsuccinate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADSL2r \"adenylosuccinate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADSL2r \"adenylosuccinate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADSS \"adenylosuccinate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADSS \"adenylosuccinate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGDC \"N acetylglucosamine 6 phosphate deacetylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGDC \"N acetylglucosamine 6 phosphate deacetylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM3PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM3PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM3PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM3PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM3PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM3PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM3Pt2pp \"GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM3Pt2pp \"GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM4PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM4PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4PCP \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM4PCP \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4PCPpp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM4PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGM4Pt2pp \"GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGM4Pt2pp \"GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGMH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGMH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGMHE \"ADP D glycero D manno heptose epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGMHE \"ADP D glycero D manno heptose epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGMT \"agmatinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGMT \"agmatinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGMt2pp \"GlcNAc anhMurNAc transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGMt2pp \"GlcNAc anhMurNAc transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGMtex \"agmatine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGMtex \"agmatine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT120 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT120 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT140 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT140 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT141 \"1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT141 \"1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT160 \"1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT160 \"1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT161 \"1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT161 \"1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT180 \"1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT180 \"1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPAT181 \"1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPAT181 \"1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AGPR \"N acetyl g glutamyl phosphate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AGPR \"N acetyl g glutamyl phosphate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AHCYSNS \"S adenosylhomocysteine nucleosidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AHCYSNS \"S adenosylhomocysteine nucleosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AICART \"phosphoribosylaminoimidazolecarboxamide formyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AICART \"phosphoribosylaminoimidazolecarboxamide formyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AIRC2 \"phosphoribosylaminoimidazole carboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AIRC2 \"phosphoribosylaminoimidazole carboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AIRC3 \"phosphoribosylaminoimidazole carboxylase mutase rxn \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AIRC3 \"phosphoribosylaminoimidazole carboxylase mutase rxn \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AKGDH \"2 Oxogluterate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AKGDH \"2 Oxogluterate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AKGt2rpp \"2 oxoglutarate reversible transport via symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AKGt2rpp \"2 oxoglutarate reversible transport via symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AKGtex \"alpha ketoglutarate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AKGtex \"alpha ketoglutarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAALAabcpp \"D alanyl D alanine DalaDala transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAALAabcpp \"D alanyl D alanine DalaDala transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAALAr \"D alanine D alanine ligase reversible \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAALAr \"D alanine D alanine ligase reversible \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAALAtex \"D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAALAtex \"D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAGLUE \"L alanyl gamma glutamate epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAGLUE \"L alanyl gamma glutamate epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAR \"alanine racemase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAR \"alanine racemase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALATA_D2 \"D alanine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALATA_D2 \"D alanine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALATA_L \"L alanine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALATA_L2 \"alanine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALATA_L2 \"alanine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALATRS \"Alanyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALATRS \"Alanyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAabcpp \"L alanine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAabcpp \"L alanine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAt2pp \"L alanine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAt2pp \"L alanine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAt4pp \"L alanine transport in via sodium symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAt4pp \"L alanine transport in via sodium symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAtex \"L alanine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAtex \"L alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALDD2y \"aldehyde dehydrogenase acetaldehyde NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALDD2y \"aldehyde dehydrogenase acetaldehyde NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALDD3y \"aldehyde dehydrogenase propanal NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALDD3y \"aldehyde dehydrogenase propanal NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALLTAMH \"allantoate amidohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALLTAMH \"allantoate amidohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALLTN \"allantoinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALLTN \"allantoinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALLTNt2rpp \"allantoin transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALLTNt2rpp \"allantoin transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALLTNtex \"allantoin transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALLTNtex \"allantoin transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALLtex \"Allose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALLtex \"Allose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALR2 \"aldose reductase methylglyoxal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALR2 \"aldose reductase methylglyoxal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALR4x \"aldose reductase acetol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALR4x \"aldose reductase acetol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AM3PA \"anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AM3PA \"anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AM4PA \"anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AM4PA \"anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AM4PCP \"anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AM4PCP \"anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMALT1 \"Amylomaltase maltotriose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMALT1 \"Amylomaltase maltotriose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMALT2 \"Amylomaltase maltotetraose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMALT2 \"Amylomaltase maltotetraose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMALT3 \"Amylomaltase maltopentaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMALT3 \"Amylomaltase maltopentaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMALT4 \"Amylomaltase maltohexaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMALT4 \"Amylomaltase maltohexaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMANAPEr \"N acetylmannosamine 6 phosphate epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMANAPEr \"N acetylmannosamine 6 phosphate epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMANK \"N acetyl D mannosamine kinase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMANK \"N acetyl D mannosamine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMAOTr \"adenosylmethionine 8 amino 7 oxononanoate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMAOTr \"adenosylmethionine 8 amino 7 oxononanoate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMMQLT8 \"S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMMQLT8 \"S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMPMS2 \"4 amino 2 methyl 5 phosphomethylpyrimidine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMPMS2 \"4 amino 2 methyl 5 phosphomethylpyrimidine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMPN \"AMP nucleosidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMPN \"AMP nucleosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMPTASECG \"alanyl aminopeptidase cys gly \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMPTASECG \"alanyl aminopeptidase cys gly \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMPTASEPG \"aminopeptidase pro gly \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMPTASEPG \"aminopeptidase pro gly \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AMPtex \"AMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AMPtex \"AMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ANHGMtex \"GlcNAc anhMurNAc transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ANHGMtex \"GlcNAc anhMurNAc transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ANHMK \"1 6 anhydrous N Acetylmuramate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ANHMK \"1 6 anhydrous N Acetylmuramate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ANPRT \"anthranilate phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ANPRT \"anthranilate phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ANS \"anthranilate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ANS \"anthranilate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AOBUTDs \"L 2 amino 3 oxobutanoate decarboxylation spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AOBUTDs \"L 2 amino 3 oxobutanoate decarboxylation spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AOXSr \"8 amino 7 oxononanoate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AOXSr \"8 amino 7 oxononanoate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AP4AH \"Ap4A hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AP4AH \"Ap4A hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AP5AH \"Ap5A hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AP5AH \"Ap5A hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_APRAUR \"5 amino 6 5 phosphoribosylamino uracil reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_APRAUR \"5 amino 6 5 phosphoribosylamino uracil reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARAI \"L arabinose isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARAI \"L arabinose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNR1 \"aerobactin reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNR2 \"aerobactin reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNR3 \"aerobactin reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNabcpp \"aerobactin transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARBTNabcpp \"aerobactin transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNexs \"aerobactin Fe loading reaction spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARBTNexs \"aerobactin Fe loading reaction spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNtex \"aerobactin secretion to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNtonex \"aerobactin transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBTNtpp \"aerobactin secretion to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBt2rpp \"L arabinose transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARBt2rpp \"L arabinose transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBt3ipp \"L arabinose transport via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARBt3ipp \"L arabinose transport via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARBtex \"L arabinose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARBtex \"L arabinose transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGAGMt7pp \"Arginineagmatine antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGAGMt7pp \"Arginineagmatine antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGDC \"arginine decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGDC \"arginine decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGDCpp \"arginine decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGDCpp \"arginine decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGORNt7pp \"arginineornithine antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGORNt7pp \"arginineornithine antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGSL \"argininosuccinate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGSL \"argininosuccinate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGSS \"argininosuccinate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGSS \"argininosuccinate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGTRS \"Arginyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGTRS \"Arginyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGabcpp \"L arginine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGabcpp \"L arginine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGt3pp \"L arginine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGt3pp \"L arginine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGtex \"L arginine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGtex \"L arginine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASAD \"aspartate semialdehyde dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASAD \"aspartate semialdehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASCBPL \"L ascorbate 6 phosphate lactonase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASCBPL \"L ascorbate 6 phosphate lactonase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASCBptspp \"L ascorbate transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASCBptspp \"L ascorbate transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASCBtex \"L ascorbate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASCBtex \"L ascorbate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNN \"L asparaginase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNN \"L asparaginase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNNpp \"L asparaginase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNNpp \"L asparaginase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNS1 \"asparagine synthase glutamine hydrolysing \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNS1 \"asparagine synthase glutamine hydrolysing \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNS2 \"asparagine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNS2 \"asparagine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNTRS \"Asparaginyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNTRS \"Asparaginyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNabcpp \"L asparagine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNt2rpp \"L asparagine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNt2rpp \"L asparagine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASNtex \"L asparagine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASNtex \"L asparagine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASO3tex \"arsenite transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASO3tex \"arsenite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASP1DC \"aspartate 1 decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASP1DC \"aspartate 1 decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPCT \"aspartate carbamoyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPCT \"aspartate carbamoyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPK \"aspartate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPK \"aspartate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPO3 \"L aspartate oxidase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPO3 \"L aspartate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPO4 \"L aspartate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPO4 \"L aspartate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPO5 \"L aspartate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPO5 \"L aspartate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPO6 \"L aspartate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPO6 \"L aspartate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPT \"L aspartase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPT \"L aspartase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPTA \"aspartate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPTA \"aspartate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPTRS \"Aspartyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPTRS \"Aspartyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPabcpp \"L aspartate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPabcpp \"L aspartate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPt2_2pp \"Aspartate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPt2_2pp \"Aspartate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPt2pp \"L aspartate transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPt2pp \"L aspartate transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPtex \"L aspartate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPtex \"L aspartate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AST \"Arginine succinyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AST \"Arginine succinyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ATHRDHr \"L allo threonine dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ATHRDHr \"L allo threonine dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ATPHs \"ATP amine hydrolysis spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ATPHs \"ATP amine hydrolysis spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ATPM \"ATP maintenance requirement\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ATPPRT \"ATP phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ATPPRT \"ATP phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ATPS4rpp \"ATP synthase four protons for one ATP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ATPS4rpp \"ATP synthase four protons for one ATP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BALAt2pp \"beta alanine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BALAt2pp \"beta alanine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BALAtex \"beta alanine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BALAtex \"beta alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BPNT \"3 5 bisphosphate nucleotidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BSORx \"Biotin sulfoxide reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BSORx \"Biotin sulfoxide reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BSORy \"Biotin sulfoxide reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BSORy \"Biotin sulfoxide reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BTS4 \"Biotin synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BTS4 \"Biotin synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BUTSO3tex \"butanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BUTSO3tex \"butanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_BUTtex \"Butyrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_BUTtex \"Butyrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CA2t3pp \"calcium Ca2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CA2t3pp \"calcium Ca2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CA2tex \"calcium Ca2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CA2tex \"calcium Ca2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CADVtpp \"LysineCadaverine antiporter periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CADVtpp \"LysineCadaverine antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CAt6pp \"calcium sodium antiporter 11 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CAt6pp \"calcium sodium antiporter 11 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBIAT \"Cobinamide adenyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBIAT \"Cobinamide adenyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBItonex \"Cobinamide transport via ton system extermal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBItonex \"Cobinamide transport via ton system extermal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBIuabcpp \"Cobinamide transport via ABC system uptake periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBIuabcpp \"Cobinamide transport via ABC system uptake periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBL1abcpp \"Cob 1 alamin transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBL1abcpp \"Cob 1 alamin transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBL1tonex \"Cob 1 alamin transport via ton system extermal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBL1tonex \"Cob 1 alamin transport via ton system extermal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBPS \"carbamoyl phosphate synthase glutamine hydrolysing \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBPS \"carbamoyl phosphate synthase glutamine hydrolysing \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CD2abcpp \"Cadmium Cd2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CD2abcpp \"Cadmium Cd2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CD2t3pp \"cadmium Cd2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CD2t3pp \"cadmium Cd2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CD2tex \"cadmium Cd2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CD2tex \"cadmium Cd2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CD2tpp \"cadmium 2 transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CD2tpp \"cadmium 2 transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA120 \"CDP Diacylglycerol pyrophostatase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA120 \"CDP Diacylglycerol pyrophostatase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA140 \"CDP Diacylglycerol pyrophostatase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA140 \"CDP Diacylglycerol pyrophostatase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA141 \"CDP Diacylglycerol pyrophostatase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA141 \"CDP Diacylglycerol pyrophostatase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA160 \"CDP Diacylglycerol pyrophostatase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA160 \"CDP Diacylglycerol pyrophostatase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA161 \"CDP Diacylglycerol pyrophostatase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA161 \"CDP Diacylglycerol pyrophostatase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA180 \"CDP Diacylglycerol pyrophostatase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA180 \"CDP Diacylglycerol pyrophostatase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDAPPA181 \"CDP Diacylglycerol pyrophostatase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDAPPA181 \"CDP Diacylglycerol pyrophostatase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDPMEK \"4 cytidine 5 diphospho 2 C methyl D erythritol kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDPMEK \"4 cytidine 5 diphospho 2 C methyl D erythritol kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CFAS160E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CFAS160E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CFAS160G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CFAS160G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CFAS180E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CFAS180E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CFAS180G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CFAS180G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CGLYabcpp \"L Cysteinylglycine Cys Gly transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CGLYabcpp \"L Cysteinylglycine Cys Gly transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CGLYtex \"L Cysteinylglycine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CGLYtex \"L Cysteinylglycine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHLabcpp \"choline transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHLabcpp \"choline transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHLtex \"choline transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHLtex \"choline transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHORS \"chorismate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHORS \"chorismate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHRPL \"Chorismate pyruvate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHRPL \"Chorismate pyruvate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITL \"Citrate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITL \"Citrate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITt7pp \"Citrate transport via succinate antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITt7pp \"Citrate transport via succinate antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACONCtex \"cisaconitat transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACONCtex \"cisaconitat transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLIPAtex \"cold lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH120pp \"cardiolipin hydrolase periplasm n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH140pp \"cardiolipin hydrolase periplasm n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH141pp \"cardiolipin hydrolase periplasm n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH160pp \"cardiolipin hydrolase periplasm n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH161pp \"cardiolipin hydrolase periplasm n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH180pp \"cardiolipin hydrolase periplasm n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNH181pp \"cardiolipin hydrolase periplasm n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS120pp \"cardiolipin synthase periplasmic n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS120pp \"cardiolipin synthase periplasmic n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS140pp \"cardiolipin synthase periplasmic n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS140pp \"cardiolipin synthase periplasmic n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS141pp \"cardiolipin synthase periplasmic n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS141pp \"cardiolipin synthase periplasmic n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS160pp \"cardiolipin synthase periplasmic n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS160pp \"cardiolipin synthase periplasmic n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS161pp \"cardiolipin synthase periplasmic n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS161pp \"cardiolipin synthase periplasmic n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS180pp \"cardiolipin synthase periplasmic n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS180pp \"cardiolipin synthase periplasmic n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLPNS181pp \"cardiolipin synthase periplasmic n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLPNS181pp \"cardiolipin synthase periplasmic n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLt3_2pp \"chloride transport out via proton antiport 21  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLt3_2pp \"chloride transport out via proton antiport 21  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CLtex \"chloride Cl 1 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CLtex \"chloride Cl 1 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CMPN \"CMP nucleosidase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CMPtex \"CMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CMPtex \"CMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CO2tex \"CO2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CO2tex \"CO2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CO2tpp \"CO2 transporter via diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CO2tpp \"CO2 transporter via diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COBALT2abcpp \"Cobalt Co2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COBALT2abcpp \"Cobalt Co2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COBALT2t3pp \"cobalt Co2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COBALT2t3pp \"cobalt Co2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COBALT2tex \"cobalt Co2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COBALT2tex \"cobalt Co2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COBALT2tpp \"cobalt transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COBALT2tpp \"cobalt transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COLIPAabcpp \"core oligosaccharide lipid A transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COLIPAabcpp \"core oligosaccharide lipid A transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COLIPAtex \"core oligosaccharide lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNR1 \"coprogen Fe III  reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNR2 \"coprogen Fe III  reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNR3 \"coprogen Fe III  reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNUtex \"coprogen unloaded secretion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNUtpp \"coprogen unloaded secretion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNabcpp \"coprogen transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CPGNabcpp \"coprogen transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNexs \"coprogen Fe loading reaction spontaneaous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CPGNexs \"coprogen Fe loading reaction spontaneaous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPGNtonex \"Coprogen transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CPGNtonex \"Coprogen transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPPPGO \"coproporphyrinogen oxidase O2 required \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CPPPGO \"coproporphyrinogen oxidase O2 required \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CPPPGO2 \"Oxygen Independent coproporphyrinogen III oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CPPPGO2 \"Oxygen Independent coproporphyrinogen III oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNBTCT \"gamma butyrobetainyl CoA carnitine CoA transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNBTCT \"gamma butyrobetainyl CoA carnitine CoA transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNCAL2 \"Carnitine CoA Ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNCAL2 \"Carnitine CoA Ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNCAR \"carnitine CoA racemase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNCAR \"carnitine CoA racemase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNCBCT \"crotonobetainyl CoA carnitine CoA transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNCBCT \"crotonobetainyl CoA carnitine CoA transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNCDH \"Carnityl CoA dehydratse\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNCDH \"Carnityl CoA dehydratse\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNDCAL2 \"D Carnitine CoA Ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNDCAL2 \"D Carnitine CoA Ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNDabcpp \"D carnitine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNDabcpp \"D carnitine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNDt2rpp \"D carnitine outward transport H antiport \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNDt2rpp \"D carnitine outward transport H antiport \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNabcpp \"L carnitine transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNabcpp \"L carnitine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNt2rpp \"L carnitine outward transport H antiport \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNt2rpp \"L carnitine outward transport H antiport \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNt7pp \"Carnitinebutyrobetaine antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNt7pp \"Carnitinebutyrobetaine antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNt8pp \"L carnitineD carnitine antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNt8pp \"L carnitineD carnitine antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CRNtex \"L carnitine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CRNtex \"L carnitine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CS \"citrate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CS \"citrate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CSNtex \"cytosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CSNtex \"cytosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CTBTCAL2 \"Crotonobetaine CoA Ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CTBTCAL2 \"Crotonobetaine CoA Ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CTBTabcpp \"crotonobetaine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CTBTabcpp \"crotonobetaine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CTBTt2rpp \"cronobetaine outward transport H antiport \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CTBTt2rpp \"cronobetaine outward transport H antiport \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CTPS2 \"CTP synthase glutamine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CTPS2 \"CTP synthase glutamine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CU1Opp \"Cuprous Oxidase Cu1 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CU1Opp \"Cuprous Oxidase Cu1 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CU1abcpp \"Copper Cu 1 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CU1abcpp \"Copper Cu 1 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AU1abcpp \"Gold Au 1 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AU1abcpp \"Gold Au 1 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CU2abcpp \"Copper Cu2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CU2abcpp \"Copper Cu2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CU2tex \"copper Cu2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CU2tex \"copper Cu2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CU2tpp \"copper transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CU2tpp \"copper transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CUtex \"copper Cu1 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CUtex \"copper Cu1 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYANST \"Cyanide sulfurtransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYANST \"Cyanide sulfurtransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYANSTpp \"Cyanide sulfurtransferase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYANSTpp \"Cyanide sulfurtransferase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYANtex \"Cyanide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYANtex \"Cyanide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYNTtex \"Cyanate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYNTtex \"Cyanate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSDS \"Cysteine Desulfhydrase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSDS \"Cysteine Desulfhydrase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSDtex \"D cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSDtex \"D cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSS \"cysteine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSS \"cysteine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSSADS \"L cysteine sulfinic acid desulfurase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSSADS \"L cysteine sulfinic acid desulfurase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSTL \"cystathionine b lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSTL \"cystathionine b lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSTRS \"Cysteinyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSTRS \"Cysteinyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSabc2pp \"L cysteine export via ABC system cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSabc2pp \"L cysteine export via ABC system cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSabcpp \"L cysteine uptake via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSIabcpp \"L cystine uptake via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYStex \"L cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYStex \"L cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSItex \"L cystine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYSItex \"L cystine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYStpp \"L cysteine export via facilitated transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYStpp \"L cysteine export via facilitated transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTBO3_4pp \"cytochrome oxidase bo3 ubiquinol 8 4 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTBO3_4pp \"cytochrome oxidase bo3 ubiquinol 8 4 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTD \"cytidine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTD \"cytidine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTDH \"Cytidine hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTDH \"Cytidine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTDK2 \"cytidine kinase GTP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTDK2 \"cytidine kinase GTP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTDt2pp \"cytidine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTDt2pp \"cytidine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTDt2rpp \"cytidine transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTDt2rpp \"cytidine transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTDtex \"cytidine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTDtex \"cytidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTK1 \"cytidylate kinase CMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTK1 \"cytidylate kinase CMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTK2 \"cytidylate kinase dCMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTK2 \"cytidylate kinase dCMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAAD \"D Amino acid dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAAD \"D Amino acid dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DADA \"Deoxyadenosine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DADA \"Deoxyadenosine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DADK \"deoxyadenylate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DADK \"deoxyadenylate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DADNt2pp \"deoxyadenosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DADNt2pp \"deoxyadenosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DADNtex \"deoxyadenosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DADNtex \"deoxyadenosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK120 \"diacylglycerol kinase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK120 \"diacylglycerol kinase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK140 \"diacylglycerol kinase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK140 \"diacylglycerol kinase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK141 \"diacylglycerol kinase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK141 \"diacylglycerol kinase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK160 \"diacylglycerol kinase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK160 \"diacylglycerol kinase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK161 \"diacylglycerol kinase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK161 \"diacylglycerol kinase n C161 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK180 \"diacylglycerol kinase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK180 \"diacylglycerol kinase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAGK181 \"diacylglycerol kinase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAGK181 \"diacylglycerol kinase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DALAt2pp \"D alanine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DALAt2pp \"D alanine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DALAtex \"D Alanine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DALAtex \"D Alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAMPtex \"dAMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAMPtex \"dAMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAPDC \"diaminopimelate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAPDC \"diaminopimelate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAPE \"diaminopimelate epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAPE \"diaminopimelate epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAPabcpp \"M diaminopimelic acid ABC transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAPabcpp \"M diaminopimelic acid ABC transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAPtex \"1 5 Diaminopentane transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAPtex \"1 5 Diaminopentane transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN120 \"CDP diacylglycerol synthetase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN120 \"CDP diacylglycerol synthetase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN140 \"CDP diacylglycerol synthetase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN140 \"CDP diacylglycerol synthetase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN141 \"CDP diacylglycerol synthetase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN141 \"CDP diacylglycerol synthetase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN160 \"CDP diacylglycerol synthetase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN160 \"CDP diacylglycerol synthetase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN161 \"CDP diacylglycerol synthetase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN161 \"CDP diacylglycerol synthetase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN180 \"CDP diacylglycerol synthetase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN180 \"CDP diacylglycerol synthetase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DASYN181 \"CDP diacylglycerol synthetase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DASYN181 \"CDP diacylglycerol synthetase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DATPHs \"dATP amine hydrolysis spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DATPHs \"dATP amine hydrolysis spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DB4PS \"3 4 Dihydroxy 2 butanone 4 phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DB4PS \"3 4 Dihydroxy 2 butanone 4 phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DBTS \"dethiobiotin synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DBTS \"dethiobiotin synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCAtex \"Decanoate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCAtex \"Decanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCMPtex \"dCMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCMPtex \"dCMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCTPD \"dCTP deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCTPD \"dCTP deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCYTD \"deoxycytidine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCYTD \"deoxycytidine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCYTt2pp \"deoxycytidine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCYTt2pp \"deoxycytidine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DCYTtex \"deoxycytidine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DCYTtex \"deoxycytidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDCAtexi \"Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDCAtexi \"Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDGALK \"2 dehydro 3 deoxygalactonokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDGALK \"2 dehydro 3 deoxygalactonokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDGLCNtex \"2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDGLCNtex \"2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDGLK \"2 dehydro 3 deoxygluconokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDGLK \"2 dehydro 3 deoxygluconokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDPA \"3 deoxy D arabino heptulosonate 7 phosphate synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDPA \"3 deoxy D arabino heptulosonate 7 phosphate synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DGK1 \"deoxyguanylate kinase dGMPATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DGK1 \"deoxyguanylate kinase dGMPATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DGMPtex \"dGMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DGMPtex \"dGMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DGSNt2pp \"deoxyguanosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DGSNt2pp \"deoxyguanosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DGSNtex \"deoxyguanosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DGSNtex \"deoxyguanosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHAD1 \"dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHAD1 \"dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHAD2 \"Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHAD2 \"Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHAtex \"Dihydroxyacetone transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHAtex \"Dihydroxyacetone transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHAtpp \"Dihydroxyacetone transport via facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBD \"2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBD \"2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBS \"2 3 dihydroxybenzoate adenylate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBS \"2 3 dihydroxybenzoate adenylate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHDPRy \"dihydrodipicolinate reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHDPRy \"dihydrodipicolinate reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHDPS \"dihydrodipicolinate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHDPS \"dihydrodipicolinate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHFR \"dihydrofolate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHFR \"dihydrofolate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHFS \"dihydrofolate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHFS \"dihydrofolate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHNAOT4 \"1 4 dihydroxy 2 naphthoate octaprenyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHNAOT4 \"1 4 dihydroxy 2 naphthoate octaprenyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHNPA2 \"dihydroneopterin aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHNPA2 \"dihydroneopterin aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHORD2 \"dihydoorotic acid dehydrogenase quinone8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHORD2 \"dihydoorotic acid dehydrogenase quinone8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHORD5 \"dihydroorotic acid menaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHORD5 \"dihydroorotic acid menaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHORTS \"dihydroorotase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHORTS \"dihydroorotase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHPPDA2 \"diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHPPDA2 \"diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHPS2 \"dihydropteroate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHPS2 \"dihydropteroate synthase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHPTDCs \"4 5 dihydroxy 2 3 pentanedione cyclization spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHPTDCs \"4 5 dihydroxy 2 3 pentanedione cyclization spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHQS \"3 dehydroquinate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHQS \"3 dehydroquinate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHQTi \"3 dehydroquinate dehydratase irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHQTi \"3 dehydroquinate dehydratase irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DIMPtex \"dIMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DIMPtex \"dIMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DINSt2pp \"deoxyinosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DINSt2pp \"deoxyinosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DINStex \"deoxyinosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DINStex \"deoxyinosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKGLCNR1 \"2 5 diketo D gluconate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DKGLCNR1 \"2 5 diketo D gluconate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKGLCNR2x \"2 5 diketo D gluconate reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DKGLCNR2x \"2 5 diketo D gluconate reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKGLCNR2y \"2 5 diketo D gluconate reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DKGLCNR2y \"2 5 diketo D gluconate reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKMPPD \"2 3 diketo 5 methylthio 1 phosphopentane degradation reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKMPPD3 \"2 3 diketo 5 methylthio 1 phosphopentane degradation reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMATT \"dimethylallyltranstransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMATT \"dimethylallyltranstransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMPPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMPPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMQMT \"3 Dimethylubiquinonol 3 methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMQMT \"3 Dimethylubiquinonol 3 methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMSOtex \"Dimethyl sulfoxide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMSOtex \"Dimethyl sulfoxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMStex \"Dimethyl sulfide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMStex \"Dimethyl sulfide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DM_4HBA \"Sink needed to allow 4 hydroxy benzoate to leave system\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DM_5DRIB \"Sink needed to allow 5 deoxyribose to leave system\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DM_HMFURN \"Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DM_OXAM \"Sink needed to allow oxamate to leave system\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DNMPPA \"Dihydroneopterin monophosphate dephosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DNTPPA \"Dihydroneopterin triphosphate pyrophosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DNTPPA \"Dihydroneopterin triphosphate pyrophosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DOGULNR \"2 3 dioxo L gulonate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DOGULNR \"2 3 dioxo L gulonate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DOPAtex \"dopamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DOPAtex \"dopamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DPCOAK \"dephospho CoA kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DPCOAK \"dephospho CoA kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DRPA \"deoxyribose phosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DRPA \"deoxyribose phosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSBAO1 \"DsbA protein reoxidation reaction aerobic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSBAO1 \"DsbA protein reoxidation reaction aerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSBAO2 \"DsbA protein reoxidation reaction anaerobic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSBAO2 \"DsbA protein reoxidation reaction anaerobic \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSBCGT \"DsbCglutathione thiotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSBCGT \"DsbCglutathione thiotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSBDR \"DsbD reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSBDR \"DsbD reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSBGGT \"DsbGglutathione thiotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSBGGT \"DsbGglutathione thiotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSERDHr \"D serine dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSERDHr \"D serine dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSERt2pp \"D serine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSERt2pp \"D serine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSERtex \"D serine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSERtex \"D serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DTMPK \"dTMP kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DTMPK \"dTMP kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DTMPtex \"dTMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DTMPtex \"dTMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DUMPtex \"dUMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DUMPtex \"dUMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DURIK1 \"deoxyuridine kinase ATPDeoxyuridine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DURIK1 \"deoxyuridine kinase ATPDeoxyuridine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DURIPP \"deoxyuridine phosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DURIPP \"deoxyuridine phosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DURIt2pp \"deoxyuridine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DURIt2pp \"deoxyuridine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DURItex \"deoxyuridine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DURItex \"deoxyuridine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DUTPDP \"dUTP diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DUTPDP \"dUTP diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DXPRIi \"1 deoxy D xylulose reductoisomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DXPRIi \"1 deoxy D xylulose reductoisomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DXPS \"1 deoxy D xylulose 5 phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DXPS \"1 deoxy D xylulose 5 phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DXYLK \"1 Deoxy D xylulose kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DXYLK \"1 Deoxy D xylulose kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_D_LACt2pp \"D lactate transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_D_LACt2pp \"D lactate transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_D_LACtex \"D lactate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_D_LACtex \"D lactate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_E4PD \"Erythrose 4 phosphate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_E4PD \"Erythrose 4 phosphate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR100x \"enoyl acyl carrier protein reductase NADH  n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR100x \"enoyl acyl carrier protein reductase NADH  n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR100y \"enoyl acyl carrier protein reductase NADPH  n C100 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR100y \"enoyl acyl carrier protein reductase NADPH  n C100 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR120x \"enoyl acyl carrier protein reductase NADH  n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR120x \"enoyl acyl carrier protein reductase NADH  n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR120y \"enoyl acyl carrier protein reductase NADPH  n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR120y \"enoyl acyl carrier protein reductase NADPH  n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR121x \"enoyl acyl carrier protein reductase NADH  n C121 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR121x \"enoyl acyl carrier protein reductase NADH  n C121 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR121y \"enoyl acyl carrier protein reductase NADPH  n C121 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR121y \"enoyl acyl carrier protein reductase NADPH  n C121 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR140x \"enoyl acyl carrier protein reductase NADH  n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR140x \"enoyl acyl carrier protein reductase NADH  n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR140y \"enoyl acyl carrier protein reductase NADPH  n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR140y \"enoyl acyl carrier protein reductase NADPH  n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR141x \"enoyl acyl carrier protein reductase NADH  n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR141x \"enoyl acyl carrier protein reductase NADH  n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR141y \"enoyl acyl carrier protein reductase NADPH  n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR141y \"enoyl acyl carrier protein reductase NADPH  n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR160x \"enoyl acyl carrier protein reductase NADH  n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR160x \"enoyl acyl carrier protein reductase NADH  n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR160y \"enoyl acyl carrier protein reductase NADPH  n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR160y \"enoyl acyl carrier protein reductase NADPH  n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR161x \"enoyl acyl carrier protein reductase NADH  n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR161x \"enoyl acyl carrier protein reductase NADH  n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR161y \"enoyl acyl carrier protein reductase NADPH  n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR161y \"enoyl acyl carrier protein reductase NADPH  n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR180x \"enoyl acyl carrier protein reductase NADH  n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR180x \"enoyl acyl carrier protein reductase NADH  n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR180y \"enoyl acyl carrier protein reductase NADPH  n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR180y \"enoyl acyl carrier protein reductase NADPH  n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR181x \"enoyl acyl carrier protein reductase NADH  n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR181x \"enoyl acyl carrier protein reductase NADH  n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR181y \"enoyl acyl carrier protein reductase NADPH  n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR181y \"enoyl acyl carrier protein reductase NADPH  n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR40x \"enoyl acyl carrier protein reductase NADH  n C40 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR40x \"enoyl acyl carrier protein reductase NADH  n C40 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR40y \"enoyl acyl carrier protein reductase NADPH  n C40 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR40y \"enoyl acyl carrier protein reductase NADPH  n C40 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR60x \"enoyl acyl carrier protein reductase NADH  n C60 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR60x \"enoyl acyl carrier protein reductase NADH  n C60 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR60y \"enoyl acyl carrier protein reductase NADPH  n C60 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR60y \"enoyl acyl carrier protein reductase NADPH  n C60 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR80x \"enoyl acyl carrier protein reductase NADH  n C80 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR80x \"enoyl acyl carrier protein reductase NADH  n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EAR80y \"enoyl acyl carrier protein reductase NADPH  n C80 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EAR80y \"enoyl acyl carrier protein reductase NADPH  n C80 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECA4COLIPAtex \"enterobacterial common antigen x4 core oligosaccharide lipid A transport periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECA4OALpp \"enterobacterial common antigen x4 O antigen ligase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECA4OALpp \"enterobacterial common antigen x4 O antigen ligase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECAP1pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECAP1pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECAP2pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECAP2pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECAP3pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECAP3pp \"enterobacterial common antigen polymerase periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECAtpp \"enterobacterial common antigen transferase flippase cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECAtpp \"enterobacterial common antigen transferase flippase cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH1 \"3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH1 \"3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH2 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH2 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH3 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH3 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH4 \"3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH4 \"3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH5 \"3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH5 \"3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH6 \"3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH6 \"3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH7 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH7 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ECOAH8 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ECOAH8 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDA \"2 dehydro 3 deoxy phosphogluconate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDA \"2 dehydro 3 deoxy phosphogluconate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDD \"6 phosphogluconate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDD \"6 phosphogluconate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDTXS1 \"Endotoxin Synthesis lauroyl transferase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDTXS1 \"Endotoxin Synthesis lauroyl transferase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDTXS2 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDTXS2 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDTXS3 \"Endotoxin Synthesis palmitoleoyl ACP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDTXS3 \"Endotoxin Synthesis palmitoleoyl ACP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EDTXS4 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_EDTXS4 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENLIPAtex \"phosphoethanolamine lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENO \"enolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENO \"enolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTCS \"enterochelin synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTCS \"enterochelin synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETHAAL \"Ethanolamine ammonia lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ETHAAL \"Ethanolamine ammonia lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETHAt2pp \"ethanolamine transport in via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ETHAt2pp \"ethanolamine transport in via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETHAtex \"ethanolamine transport via diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ETHAtex \"ethanolamine transport via diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETHSO3tex \"ethanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ETHSO3tex \"ethanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETOHt2rpp \"ethanol reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ETOHtex \"ethanol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ETOHtex \"ethanol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_chitob_e \"Chitobiose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pydxn_e \"Pyridoxine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pydx_e \"Pyridoxal exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_12ppd__R_e \" R Propane 1 2 diol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_12ppd__S_e \" S Propane 1 2 diol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_14glucan_e \"1 4 alpha D glucan exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_15dap_e \"1 5 Diaminopentane exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23camp_e \"2 3 Cyclic AMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23ccmp_e \"2 3 Cyclic CMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23cgmp_e \"2 3 Cyclic GMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23cump_e \"2 3 Cyclic UMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23dappa_e \"2 3 diaminopropionate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_26dap__M_e \"meso 2 6 Diaminoheptanedioate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_2ddglcn_e \"2 Dehydro 3 deoxy D gluconate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_34dhpac_e \"3 4 Dihydroxyphenylacetaldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3amp_e \"3 AMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3cmp_e \"3 cmp exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3gmp_e \"3 GMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3hcinnm_e \"3 hydroxycinnamic acid exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3hpppn_e \"3 3 hydroxy phenyl propionate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3ump_e \"3 UMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_4abut_e \"4 Aminobutanoate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_4hoxpacd_e \"4 Hydroxyphenylacetaldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_5dglcn_e \"5 Dehydro D gluconate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_LalaDgluMdapDala_e \"L alanine D glutamate meso 2 6 diaminoheptanedioate D alanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_LalaDgluMdap_e \"L alanine D glutamate meso 2 6 diaminoheptanedioate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ac_e \"Acetate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acac_e \"Acetoacetate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acald_e \"Acetaldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acgal1p_e \"N Acetyl D galactosamine 1 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acgal_e \"N Acetyl D galactosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acgam1p_e \"N Acetyl D glucosamine 1 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acgam_e \"N Acetyl D glucosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acmana_e \"N Acetyl D mannosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acmum_e \"N Acetylmuramate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acnam_e \"N Acetylneuraminate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acolipa_e \"4 Amino 4 deoxy L arabinose modified core oligosaccharide lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acser_e \"O Acetyl L serine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ade_e \"Adenine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_adn_e \"Adenosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_adocbl_e \"Adenosylcobalamin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ag_e \"silver exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_agm_e \"Agmatine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_akg_e \"2 Oxoglutarate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ala__B_e \"beta Alanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ala__D_e \"D Alanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ala__L_e \"L Alanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_alaala_e \"D Alanyl D alanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_all__D_e \"D Allose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_alltn_e \"Allantoin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_amp_e \"AMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_anhgm_e \"N Acetyl D glucosamine anhydrous N Acetylmuramic acid exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_arab__L_e \"L Arabinose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_arbtn_e \"aerobactin minus Fe3 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_arbtn__fe3_e \"Aerobactin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_arg__L_e \"L Arginine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ascb__L_e \"L Ascorbate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_asn__L_e \"L Asparagine exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_aso3_e \"arsenite exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_asp__L_e \"L Aspartate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_but_e \"Butyrate n C40 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_butso3_e \"butanesulfonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ca2_e \"Calcium exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cbi_e \"Cobinamide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cbl1_e \"Cob I alamin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cd2_e \"Cadmium exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cgly_e \"Cys Gly exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_chol_e \"Choline exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cit_e \"Citrate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_icit_e \"Isocitrate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_acon__C_e \"cisaconitate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cl_e \"Chloride exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cmp_e \"CMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_co2_e \"CO2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cobalt2_e \"Co2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_colipa_e \"core oligosaccharide lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cpgn_e \"coprogen exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cpgn__un_e \"coprogen unloaded no Fe III  exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_crn_e \"L Carnitine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_csn_e \"Cytosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cu2_e \"Cu2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cu_e \"Cu exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cyan_e \"Hydrogen cyanide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cynt_e \"Cyanate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cys__D_e \"D Cysteine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cys__L_e \"L Cysteine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cysi__L_e \"L Cystine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_cytd_e \"Cytidine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dad__2_e \"Deoxyadenosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_damp_e \"dAMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dca_e \"Decanoate n C100 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dcmp_e \"dCMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dcyt_e \"Deoxycytidine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ddca_e \"Dodecanoate n C120 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dgmp_e \"dGMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dgsn_e \"Deoxyguanosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dha_e \"Dihydroxyacetone exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dimp_e \"dIMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_din_e \"Deoxyinosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dms_e \"Dimethyl sulfide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dmso_e \"Dimethyl sulfoxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dopa_e \"Dopamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dtmp_e \"dTMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dump_e \"dUMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_duri_e \"Deoxyuridine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_eca4colipa_e \" enterobacterial common antigen x4 core oligosaccharide lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_enlipa_e \"phosphoethanolamine KDO 2 lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_enter_e \"Enterochelin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_etha_e \"Ethanolamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ethso3_e \"ethanesulfonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_etoh_e \"Ethanol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_f6p_e \"D fructose 6 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fald_e \"Formaldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe2_e \"Fe2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3_e \"Fe3 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3dcit_e \"Fe III dicitrate exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3dhbzs_e \"ferric 2 3 dihydroxybenzoylserine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3hox_e \"Fe III hydroxamate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3hox__un_e \"Fe III hydoxamate unloaded exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fecrm_e \"Ferrichrome exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fecrm__un_e \"Ferrichrome minus Fe III exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feenter_e \"Fe enterobactin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feoxam_e \"ferroxamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feoxam__un_e \"ferroxamine minus Fe 3 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_for_e \"Formate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fru_e \"D Fructose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_frulys_e \"fructoselysine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fruur_e \"D Fructuronate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fuc__L_e \"L Fucose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fum_e \"Fumarate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g1p_e \"D Glucose 1 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g3pc_e \"sn Glycero 3 phosphocholine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g3pe_e \"sn Glycero 3 phosphoethanolamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g3pg_e \"Glycerophosphoglycerol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g3pi_e \"sn Glycero 3 phospho 1 inositol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g3ps_e \"Glycerophosphoserine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_g6p_e \"D Glucose 6 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gal1p_e \"alpha D Galactose 1 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gal__bD_e \"beta D Galactose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gal_e \"D Galactose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_galct__D_e \"D Galactarate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_galctn__D_e \"D Galactonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_galctn__L_e \"L Galactonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_galt_e \"Galactitol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_galur_e \"D Galacturonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gam6p_e \"D Glucosamine 6 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gam_e \"D Glucosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gbbtn_e \"gamma butyrobetaine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gdp_e \"GDP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glc__D_e \"D Glucose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glcn_e \"D Gluconate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glcr_e \"D Glucarate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glcur1p_e \"D Glucuronate 1 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glcur_e \"D Glucuronate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gln__L_e \"L Glutamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glu__L_e \"L Glutamate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gly_e \"Glycine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyald_e \"D Glyceraldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyb_e \"Glycine betaine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyc2p_e \"Glycerol 2 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyc3p_e \"Glycerol 3 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyc__R_e \" R Glycerate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyc_e \"Glycerol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_glyclt_e \"Glycolate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gmp_e \"GMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gsn_e \"Guanosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gthox_e \"Oxidized glutathione exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gthrd_e \"Reduced glutathione exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gtp_e \"GTP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_gua_e \"Guanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_h2_e \"H2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_h2o2_e \"Hydrogen peroxide exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_h2o_e \"H2O exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_h2s_e \"Hydrogen sulfide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_h_e \"H exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hacolipa_e \"hepta acylated core oligosaccharide lipid A E coli exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_halipa_e \"hepta acylated KDO 2 lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hdca_e \"Hexadecanoate n C160 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hdcea_e \"hexadecenoate n C161 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hg2_e \"Hg2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_his__L_e \"L Histidine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hom__L_e \"L Homoserine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hxa_e \"Hexanoate n C60 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_hxan_e \"Hypoxanthine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_idon__L_e \"L Idonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ile__L_e \"L Isoleucine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_imp_e \"IMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_indole_e \"Indole exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_inost_e \"myo Inositol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ins_e \"Inosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_isetac_e \"Isethionic acid exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_k_e \"K exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_kdo2lipid4_e \"KDO 2 lipid IV A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lac__D_e \"D lactate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lac__L_e \"L Lactate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lcts_e \"Lactose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_leu__L_e \"L Leucine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lipa__cold_e \"cold adapted KDO 2 lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lipa_e \"KDO 2 lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lys__L_e \"L Lysine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_lyx__L_e \"L Lyxose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mal__D_e \"D Malate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mal__L_e \"L Malate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_malt_e \"Maltose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_malthx_e \"Maltohexaose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_maltpt_e \"Maltopentaose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_malttr_e \"Maltotriose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_maltttr_e \"Maltotetraose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_man6p_e \"D Mannose 6 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_man_e \"D Mannose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_manglyc_e \"2 alpha D Mannosyl D glycerate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_melib_e \"Melibiose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_met__D_e \"D Methionine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_met__L_e \"L Methionine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_metsox__R__L_e \"L methionine R sulfoxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_metsox__S__L_e \"L Methionine S oxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mg2_e \"Mg exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_minohp_e \"myo Inositol hexakisphosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mmet_e \"S Methyl L methionine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mn2_e \"Mn2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mnl_e \"D Mannitol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mobd_e \"Molybdate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_mso3_e \"methanesulfonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_n2o_e \"Nitrous oxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_na1_e \"Sodium exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_nac_e \"Nicotinate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_nh4_e \"Ammonia exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ni2_e \"Ni2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_nmn_e \"NMN exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_no2_e \"Nitrite exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_no3_e \"Nitrate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_no_e \"Nitric oxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_o2_e \"O2 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_o2s_e \"Superoxide anion exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ocdca_e \"octadecanoate n C180 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ocdcea_e \"octadecenoate n C181 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_octa_e \"octanoate n C80 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_orn_e \"Ornithine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_orot_e \"Orotate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_oaa_e \"Oxaloacetate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pacald_e \"Phenylacetaldehyde exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_peamn_e \"Phenethylamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_phe__L_e \"L Phenylalanine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pheme_e \"Protoheme exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pi_e \"Phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pnto__R_e \" R Pantothenate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ppa_e \"Propionate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ppal_e \"Propanal exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pppn_e \"Phenylpropanoate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ppt_e \"Phosphonate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pro__L_e \"L Proline exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_progly_e \"L Prolinylglycine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_psclys_e \"psicoselysine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pser__L_e \"O Phospho L serine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ptrc_e \"Putrescine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pyr_e \"Pyruvate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_r5p_e \"alpha D Ribose 5 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_rib__D_e \"D Ribose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_rmn_e \"L Rhamnose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_sbt__D_e \"D Sorbitol exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ser__D_e \"D Serine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ser__L_e \"L Serine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_skm_e \"Shikimate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_so2_e \"sulfur dioxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_so3_e \"Sulfite exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_so4_e \"Sulfate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_spmd_e \"Spermidine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_succ_e \"Succinate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_sucr_e \"Sucrose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_sulfac_e \"sulfoacetate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tartr__L_e \"L tartrate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_taur_e \"Taurine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tcynt_e \"Thiocyanate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_thm_e \"Thiamin exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_thr__L_e \"L Threonine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_thrp_e \"L Threonine O 3 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_thym_e \"Thymine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_thymd_e \"Thymidine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tma_e \"Trimethylamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tmao_e \"Trimethylamine N oxide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tre_e \"Trehalose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_trp__L_e \"L Tryptophan exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tsul_e \"Thiosulfate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ttdca_e \"tetradecanoate n C140 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ttdcea_e \"tetradecenoate n C141 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tungs_e \"tungstate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tym_e \"Tyramine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tyr__L_e \"L Tyrosine exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tyrp_e \"Phosphotyrosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_uacgam_e \"UDP N acetyl D glucosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udpacgal_e \"UDP N acetyl D galactosamine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udpg_e \"UDPglucose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udpgal_e \"UDPgalactose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udpglcur_e \"UDP D glucuronate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ump_e \"UMP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_ura_e \"Uracil exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_urea_e \"Urea exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_uri_e \"Uridine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_val__L_e \"L Valine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_xan_e \"Xanthine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_xmp_e \"Xanthosine 5 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_xtsn_e \"Xanthosine exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_xyl__D_e \"D Xylose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_xylu__L_e \"L Xylulose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_zn2_e \"Zinc exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Ec_biomass_iAF1260_core_59p81M \"E coli biomass objective function iAF1260   core  with 5981 GAM estimate\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_F6PA \"fructose 6 phosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_F6PA \"fructose 6 phosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_F6PP \"D fructose 6 phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_F6PP \"D fructose 6 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_F6Pt6_2pp \"Fructose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_F6Pt6_2pp \"Fructose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_F6Ptex \"fructose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_F6Ptex \"fructose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA100ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA100ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA120ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA120ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA140ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA140ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA141ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA141ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA160ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA160ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA161ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA161ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FA80ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FA80ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE100 \"fatty acid CoA thioesterase decanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE100 \"fatty acid CoA thioesterase decanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE120 \"fatty acid CoA thioesterase dodecanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE120 \"fatty acid CoA thioesterase dodecanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE140 \"fatty acid CoA thioesterase tetradecanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE140 \"fatty acid CoA thioesterase tetradecanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE141 \"fatty acid CoA thioesterase tetradecenoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE141 \"fatty acid CoA thioesterase tetradecenoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE160 \"fatty acid CoA thioesterase hexadecanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE160 \"fatty acid CoA thioesterase hexadecanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE161 \"fatty acid CoA thioesterase hexadecenoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE161 \"fatty acid CoA thioesterase hexadecenoate \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE180 \"fatty acid CoA thioesterase octadecanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE180 \"fatty acid CoA thioesterase octadecanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE181 \"fatty acid CoA thioesterase octadecenoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE181 \"fatty acid CoA thioesterase octadecenoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE60 \"fatty acid CoA thioesterase hexanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE60 \"fatty acid CoA thioesterase hexanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAE80 \"fatty acid CoA thioesterase octanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAE80 \"fatty acid CoA thioesterase octanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL100t2pp \"fatty acid CoA ligase decanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL100t2pp \"fatty acid CoA ligase decanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL120t2pp \"fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL120t2pp \"fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL140t2pp \"fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL140t2pp \"fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL141t2pp \"fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL141t2pp \"fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL160t2pp \"fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL160t2pp \"fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL161t2pp \"fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL161t2pp \"fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL180t2pp \"fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL180t2pp \"fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL181t2pp \"fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL181t2pp \"fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL60t2pp \"fatty acid CoA ligase hexanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL60t2pp \"fatty acid CoA ligase hexanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FACOAL80t2pp \"fatty acid CoA ligase octanoate transport via vectoral Co A coupling \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FACOAL80t2pp \"fatty acid CoA ligase octanoate transport via vectoral Co A coupling \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FADRx \"FAD reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FADRx \"FAD reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FADRx2 \"FAD reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FADRx2 \"FAD reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FALDtex \"formaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FALDtex \"formaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FALDtpp \"formaldehyde transport via diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FALDtpp \"formaldehyde transport via diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FALGTHLs \"formaldehyde glutathione ligase spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FALGTHLs \"formaldehyde glutathione ligase spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FBA \"fructose bisphosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FBA \"fructose bisphosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FBP \"fructose bisphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FBP \"fructose bisphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FCI \"L fucose isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FCI \"L fucose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FCLK \"L fuculokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FCLK \"L fuculokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FCLPA \"L fuculose 1 phosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FCLPA \"L fuculose 1 phosphate aldolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FCLT \"Ferrochelatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FCLT \"Ferrochelatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FDH4pp \"formate dehydrogenase quinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FDH4pp \"formate dehydrogenase quinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FDH5pp \"Formate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FDH5pp \"Formate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE2t2pp \"iron II transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE2t2pp \"iron II transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE2tex \"iron II transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE2tex \"iron II transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE2tpp \"iron 2 transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE2tpp \"iron 2 transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3DHBZR \"release of Fe III from ferric 2 3 dihydroxybenzoylserine\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3DHBZSabcpp \"ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3DHBZSabcpp \"ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3DHBZStonex \"ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3DHBZStonex \"ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXR1 \"Fe III hydroxamate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXR2 \"Fe III hydroxamate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXR3 \"Fe III hydroxamate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXUtex \"Fe III hydroxamate unloaded secretion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXUtpp \"Fe III hydroxamate unloaded secretion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXexs \"Fe III hydroxamate Fe loading reaction spontaneaous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3HOXexs \"Fe III hydroxamate Fe loading reaction spontaneaous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXtonex \"Fe III hydroxamine transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3HOXtonex \"Fe III hydroxamine transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3Ri \"Fe III reduction\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3Ri \"Fe III reduction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3tex \"iron III transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3tex \"iron III transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMR1 \"Ferrichrome reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMR2 \"Ferrichrome reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMR3 \"Ferrichrome reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMUtex \"ferrichrome minus Fe secretion to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMUtpp \"ferrichrome minus Fe secretion to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMabcpp \"ferrichrome transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FECRMabcpp \"ferrichrome transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMexs \"ferrichrome Fe III loading reaction spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FECRMexs \"ferrichrome Fe III loading reaction spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FECRMtonex \"ferrichrome transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FECRMtonex \"ferrichrome transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERabcpp \"Fe enterobactin transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERabcpp \"Fe enterobactin transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERexs \"enterobactin Fe III binding spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERexs \"enterobactin Fe III binding spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERtonex \"Fe enterobactin transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERtonex \"Fe enterobactin transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERtpp \"enterochelin transport secretion \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERtpp \"enterochelin transport secretion \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMUtex \"ferroxamine minus Fe3 secretion to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMUtpp \"ferroxamine minus Fe3 secretion to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMabcpp \"ferroxamine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMabcpp \"ferroxamine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMexs \"ferroxamine Fe3 loading reaction spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMexs \"ferroxamine Fe3 loading reaction spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMtonex \"ferroxamine transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMtonex \"ferroxamine transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROpp \"ferroxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROpp \"ferroxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FHL \"Formate hydrogen lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FHL \"Formate hydrogen lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FLDR \"flavodoxin reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FLDR \"flavodoxin reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FLVR \"flavin reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FLVR \"flavin reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FLVRx \"flavin reductase NAD \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FLVRx \"flavin reductase NAD \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FMETTRS \"Methionyl tRNA formyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FMETTRS \"Methionyl tRNA formyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FMNAT \"FMN adenylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FMNAT \"FMN adenylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FMNRx \"FMN reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FMNRx \"FMN reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FMNRx2 \"FMN reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FMNRx2 \"FMN reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FORt2pp \"formate transport via proton symport uptake only periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FORt2pp \"formate transport via proton symport uptake only periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FORtex \"formate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FORtex \"formate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FORtppi \"formate transport via diffusion cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FORtppi \"formate transport via diffusion cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRD2 \"fumarate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRD2 \"fumarate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRD3 \"fumarate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRD3 \"fumarate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRUK \"fructose 1 phosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRUK \"fructose 1 phosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRULYStex \"fructoselysine transporter via diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRULYStex \"fructoselysine transporter via diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRUURtex \"D fructuronate transport via diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRUURtex \"D fructuronate transport via diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRUpts2pp \"Fructose transport via PEPPyr PTS f6p generating  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRUpts2pp \"Fructose transport via PEPPyr PTS f6p generating  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRUptspp \"D fructose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRUptspp \"D fructose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FRUtex \"D fructose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FRUtex \"D fructose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FTHFD \"formyltetrahydrofolate deformylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FTHFD \"formyltetrahydrofolate deformylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUCtex \"L fucose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUCtex \"L fucose transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUCtpp \"L fucose transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUCtpp \"L fucose transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUM \"fumarase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUM \"fumarase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUMt2_2pp \"Fumarate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUMt2_2pp \"Fumarate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUMtex \"Fumarate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUMtex \"Fumarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1PACT \"glucosamine 1 phosphate N acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1PACT \"glucosamine 1 phosphate N acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1PPpp \"Glucose 1 phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1PPpp \"Glucose 1 phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1PTT \"glucose 1 phosphate thymidylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1PTT \"glucose 1 phosphate thymidylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1Ptex \"D glucose 1 phosphate transport via diffusion\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1Ptex \"D glucose 1 phosphate transport via diffusion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1SAT \"glutamate 1 semialdehyde aminotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1SAT \"glutamate 1 semialdehyde aminotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G2PPpp \"glycerol 2 phosphate phosphatase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G2PPpp \"glycerol 2 phosphate phosphatase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT120 \"glycerol 3 phosphate acyltransferase C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT120 \"glycerol 3 phosphate acyltransferase C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT140 \"glycerol 3 phosphate acyltransferase C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT140 \"glycerol 3 phosphate acyltransferase C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT141 \"glycerol 3 phosphate acyltransferase C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT141 \"glycerol 3 phosphate acyltransferase C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT160 \"glycerol 3 phosphate acyltransferase C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT160 \"glycerol 3 phosphate acyltransferase C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT161 \"glycerol 3 phosphate acyltransferase C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT161 \"glycerol 3 phosphate acyltransferase C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT180 \"glycerol 3 phosphate acyltransferase C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT180 \"glycerol 3 phosphate acyltransferase C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PAT181 \"glycerol 3 phosphate acyltransferase C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PAT181 \"glycerol 3 phosphate acyltransferase C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PCabcpp \"sn glycerol 3 phosphocholine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PCabcpp \"sn glycerol 3 phosphocholine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PCtex \"glycero 3 phosphocholine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PCtex \"glycero 3 phosphocholine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PD2 \"glycerol 3 phosphate dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PD2 \"glycerol 3 phosphate dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PD5 \"glycerol 3 phosphate dehydrogenase ubiquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PD5 \"glycerol 3 phosphate dehydrogenase ubiquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PD6 \"glycerol 3 phosphate dehydrogenase menaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PD6 \"glycerol 3 phosphate dehydrogenase menaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PD7 \"glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PD7 \"glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PEabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PEabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PEtex \"glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PEtex \"glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PGabcpp \"sn glycerol 3 phosphoglycerol transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PGabcpp \"sn glycerol 3 phosphoglycerol transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PGtex \"glycerophoglycerol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PGtex \"glycerophoglycerol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PIabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PIabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PItex \"glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PItex \"glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PSabcpp \"sn glycerol 3 phosphoserine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PSabcpp \"sn glycerol 3 phosphoserine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PStex \"glycerophosphserine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PStex \"glycerophosphserine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G3PT \"glycerol 3 phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G3PT \"glycerol 3 phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G5SADs \"L glutamate 5 semialdehyde dehydratase spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G5SADs \"L glutamate 5 semialdehyde dehydratase spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G5SD \"glutamate 5 semialdehyde dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G5SD \"glutamate 5 semialdehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G6PDA \"glucosamine 6 phosphate deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G6PDA \"glucosamine 6 phosphate deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G6PDH2r \"glucose 6 phosphate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G6PDH2r \"glucose 6 phosphate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G6PP \"glucose 6 phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G6PP \"glucose 6 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G6Pt6_2pp \"Glucose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G6Pt6_2pp \"Glucose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G6Ptex \"glucose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G6Ptex \"glucose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAL1PPpp \"D galactose 1 phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAL1PPpp \"D galactose 1 phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAL1Ptex \"D galactose 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAL1Ptex \"D galactose 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALBDtex \"beta D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALBDtex \"beta D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTNLtex \"L galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTNLtex \"L galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTNt2pp \"D galactonate transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTNt2pp \"D galactonate transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTNtex \"D galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTNtex \"D galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTt2rpp \"D galactarte transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTt2rpp \"D galactarte transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTtex \"D galactarte transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTtex \"D galactarte transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALKr \"galactokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALKr \"galactokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALM2pp \"aldose 1 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALM2pp \"aldose 1 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALS3 \"a galactosidase melibiose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALS3 \"a galactosidase melibiose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALT1 \"galactosyltransferase I LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALT1 \"galactosyltransferase I LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALTtex \"Galactitol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALTtex \"Galactitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALURt2rpp \"D galacturonate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALURt2rpp \"D galacturonate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALURtex \"D galacturonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALURtex \"D galacturonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALUi \"UTP glucose 1 phosphate uridylyltransferase irreversible \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALUi \"UTP glucose 1 phosphate uridylyltransferase irreversible \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALabcpp \"D galactose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALabcpp \"D galactose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALt2pp \"D galactose transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALt2pp \"D galactose transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALtex \"D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALtex \"D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAM6Pt6_2pp \"D Glucosamine 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAM6Pt6_2pp \"D Glucosamine 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAMAN6Ptex \"D glucosamine 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAMAN6Ptex \"D glucosamine 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAMptspp \"D glucosamine transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAMptspp \"D glucosamine transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAMtex \"D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAMtex \"D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GAPD \"glyceraldehyde 3 phosphate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GAPD \"glyceraldehyde 3 phosphate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GARFT \"phosphoribosylglycinamide formyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GARFT \"phosphoribosylglycinamide formyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GART \"GAR transformylase T\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GART \"GAR transformylase T\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GBBTNtex \"gamma butyrobetaine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GBBTNtex \"gamma butyrobetaine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GDMANE \"GDP 4 dehydro 6 deoxy D mannose epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GDMANE \"GDP 4 dehydro 6 deoxy D mannose epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GDPDPK \"GDP diphosphokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GDPDPK \"GDP diphosphokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GDPMNH \"GDP mannose mannosyl hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GDPMNH \"GDP mannose mannosyl hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GDPMNP \"GDP mannose phyrophosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GDPMNP \"GDP mannose phyrophosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GDPtex \"GDP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GDPtex \"GDP transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GF6PTA \"glutamine fructose 6 phosphate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GF6PTA \"glutamine fructose 6 phosphate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GHMT2r \"glycine hydroxymethyltransferase reversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GHMT2r \"glycine hydroxymethyltransferase reversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GK1 \"guanylate kinase GMPATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GK1 \"guanylate kinase GMPATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLBRAN2 \"1 4 alpha glucan branching enzyme glycogen  bglycogen \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLBRAN2 \"1 4 alpha glucan branching enzyme glycogen  bglycogen \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCATr \"D glucose O acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCATr \"D glucose O acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCDpp \"Glucose dehydrogenase ubiquinone 8 as acceptor  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCDpp \"Glucose dehydrogenase ubiquinone 8 as acceptor  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCNt2rpp \"D gluconate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCNt2rpp \"D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCNtex \"D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCNtex \"D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCP \"glycogen phosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCP \"glycogen phosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCP2 \"glycogen phosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCP2 \"glycogen phosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCRAL \"5 dehydro 4 deoxyglucarate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCRAL \"5 dehydro 4 deoxyglucarate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCRD \"glucarate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCRD \"glucarate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCRt2rpp \"D glucarate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCRt2rpp \"D glucarate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCRtex \"D glucarate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCRtex \"D glucarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCS1 \"glycogen synthase ADPGlc \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCS1 \"glycogen synthase ADPGlc \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCTR1 \"glucosyltransferase I LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCTR1 \"glucosyltransferase I LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCTR2 \"glucosyltransferase II LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCTR2 \"glucosyltransferase II LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCTR3 \"glucosyltransferase III LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCTR3 \"glucosyltransferase III LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCUR1Ptex \"D glucuronate 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCUR1Ptex \"D glucuronate 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCURt2rpp \"D glucuronate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCURt2rpp \"D glucuronate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCURtex \"D glucuronat transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCURtex \"D glucuronat transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCabcpp \"D glucose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCabcpp \"D glucose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCptspp \"D glucose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCptspp \"D glucose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCt2pp \"D glucose transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCt2pp \"D glucose transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCtex \"glucose transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCtex \"glucose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLCtexi \"D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLCtexi \"D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLDBRAN2 \"glycogen debranching enzyme bglycogen  glycogen \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLDBRAN2 \"glycogen debranching enzyme bglycogen  glycogen \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLGC \"glucose 1 phosphate adenylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLGC \"glucose 1 phosphate adenylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLNS \"glutamine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLNS \"glutamine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLNTRS \"Glutaminyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLNTRS \"Glutaminyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLNabcpp \"L glutamine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLNabcpp \"L glutamine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLNtex \"L glutamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLNtex \"L glutamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLU5K \"glutamate 5 kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLU5K \"glutamate 5 kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUCYS \"gamma glutamylcysteine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUCYS \"gamma glutamylcysteine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUDy \"glutamate dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUDy \"glutamate dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUN \"glutaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUN \"glutaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUNpp \"glutaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUNpp \"glutaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUPRT \"glutamine phosphoribosyldiphosphate amidotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUPRT \"glutamine phosphoribosyldiphosphate amidotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUR \"glutamate racemase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUR \"glutamate racemase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUSy \"glutamate synthase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUSy \"glutamate synthase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUTRR \"glutamyl tRNA reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUTRR \"glutamyl tRNA reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUTRS \"Glutamyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUTRS \"Glutamyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUabcpp \"L glutamate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUabcpp \"L glutamate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUt2rpp \"L glutamate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUt2rpp \"L glutamate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUt4pp \"Naglutamate symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUt4pp \"Naglutamate symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLUtex \"L glutamate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLUtex \"L glutamate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLXCL \"glyoxalate carboligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLXCL \"glyoxalate carboligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYALDtex \"Glyceraldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYALDtex \"Glyceraldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYALDtpp \"Glyceraldehyde facilitated diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYALDtpp \"Glyceraldehyde facilitated diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYAT \"glycine C acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYAT \"glycine C acetyltransferase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYBabcpp \"Glycine betaine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYBabcpp \"Glycine betaine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYBtex \"Glycine betaine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYBtex \"Glycine betaine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYC2Ptex \"Glycerol 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYC2Ptex \"Glycerol 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYC3Pabcpp \"sn Glycerol 3 phosphate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYC3Pabcpp \"sn Glycerol 3 phosphate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYC3Pt6pp \"Glycerol 3 phosphate phosphate antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYC3Pt6pp \"Glycerol 3 phosphate phosphate antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYC3Ptex \"Glycerol 3 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYC3Ptex \"Glycerol 3 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCAt2rpp \"D glycerate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCAt2rpp \"D glycerate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCAtex \"D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCAtex \"D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCDx \"Glycerol dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCDx \"Glycerol dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCK \"glycerate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCK \"glycerate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCK2 \"glycerate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCK2 \"glycerate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCL \"Glycine Cleavage System\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCL \"Glycine Cleavage System\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCLTDx \"Glycolate dehydrogenase NAD \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCLTDx \"Glycolate dehydrogenase NAD \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCLTDy \"Glycolate dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCLTDy \"Glycolate dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCLTt2rpp \"glycolate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCLTt2rpp \"glycolate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCLTt4pp \"glycolate transport via sodium symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCLTt4pp \"glycolate transport via sodium symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCLTtex \"glycolate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCLTtex \"glycolate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCTO2 \"Glycolate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCTO2 \"Glycolate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCTO3 \"Glycolate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCTO3 \"Glycolate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCTO4 \"Glycolate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCTO4 \"Glycolate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCtex \"glycerol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCtex \"glycerol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYCtpp \"glycerol transport via channel periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYCtpp \"glycerol transport via channel periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYK \"glycerol kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYK \"glycerol kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYOX \"hydroxyacylglutathione hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYOX \"hydroxyacylglutathione hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYOX3 \"glyoxalase III\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYTRS \"Glycyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYTRS \"Glycyl tRNA synthetase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYt2pp \"glycine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYt2pp \"glycine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYtex \"Glycine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYtex \"Glycine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMAND \"GDP D mannose dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMAND \"GDP D mannose dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMHEPAT \"D glycero D manno hepose 1 phosphate adenyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMHEPAT \"D glycero D manno hepose 1 phosphate adenyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMHEPK \"D glycero D manno heptose 7 phosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMHEPK \"D glycero D manno heptose 7 phosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMHEPPA \"D glycero D manno heptose 1 7 bisphosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMHEPPA \"D glycero D manno heptose 1 7 bisphosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMPR \"GMP reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMPR \"GMP reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMPS2 \"GMP synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMPS2 \"GMP synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GMPtex \"GMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GMPtex \"GMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GND \"phosphogluconate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GND \"phosphogluconate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GNK \"gluconokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GNK \"gluconokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GOFUCR \"GDP 4 oxo L fucose reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GOFUCR \"GDP 4 oxo L fucose reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA1 \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA1 \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA1pp \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA1pp \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA2 \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA2 \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA2pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA2pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA3 \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA3 \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA3pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA3pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA4 \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA4 \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA4pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA4pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA5 \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA5 \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GPDDA5pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GPDDA5pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GRTT \"geranyltranstransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GRTT \"geranyltranstransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GRXR \"glutaredoxin reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GRXR \"glutaredoxin reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSNK \"guanosine kinase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSNK \"guanosine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSNt2pp \"guanosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSNt2pp \"guanosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSNtex \"guanosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSNtex \"guanosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSPMDA \"Glutathionylspermidine amidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSPMDA \"Glutathionylspermidine amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSPMDS \"Glutathionylspermidine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSPMDS \"Glutathionylspermidine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHOXtex \"glutathione ox transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHOXtex \"glutathione ox transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHOr \"glutathione oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHOr \"glutathione oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHRDHpp \"glutathione hydralase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHRDHpp \"glutathione hydralase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHRDabc2pp \"glutathione export via ABC system cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHRDabc2pp \"glutathione export via ABC system cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHRDabcpp \"Reduced glutathione via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHRDabcpp \"Reduced glutathione via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHRDtex \"glutathione transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHRDtex \"glutathione transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTHS \"glutathione synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTHS \"glutathione synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPCI \"GTP cyclohydrolase I\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPCI \"GTP cyclohydrolase I\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPCII2 \"GTP cyclohydrolase II 25drapp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPCII2 \"GTP cyclohydrolase II 25drapp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPDPDP \"guanosine 5 triphosphate 3 diphosphate diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPDPDP \"guanosine 5 triphosphate 3 diphosphate diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPDPK \"GTP diphosphokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPDPK \"GTP diphosphokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPHs \"GTP amine hydrolysis spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPHs \"GTP amine hydrolysis spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GTPtex \"GTP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GTPtex \"GTP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUAPRT \"guanine phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GUAPRT \"guanine phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUAt2pp \"guanine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GUAt2pp \"guanine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUAtex \"Guanine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GUAtex \"Guanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUAtpp \"Guanine transport via diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUR1PPpp \"Glucuronate 1 phosphate phosphatase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2O2tex \"hydrogen peroxide transport via diffusion external \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2O2tex \"hydrogen peroxide transport via diffusion external \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2Otex \"H2O transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2Otex \"H2O transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2Otpp \"H2O transport via diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2Otpp \"H2O transport via diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2SO \"Hydrogen sulfide oxidation\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2St1pp \"h2s transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2St1pp \"h2s transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2Stex \"h2s transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2Stex \"h2s transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2tex \"hydrogen transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2tex \"hydrogen transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_H2tpp \"hydrogen transport diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_H2tpp \"hydrogen transport diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD1i \"3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD1i \"3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD2i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD2i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD3i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD3i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD4i \"3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD4i \"3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD5i \"3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD5i \"3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD6i \"3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD6i \"3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD7i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD7i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HACD8i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HACD8i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HBZOPT \"Hydroxybenzoate octaprenyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HBZOPT \"Hydroxybenzoate octaprenyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HCINNMtex \"3 hydroxycinnamic acid transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HCINNMtex \"3 hydroxycinnamic acid transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HCO3E \"HCO3 equilibration reaction\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HCO3E \"HCO3 equilibration reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HDCAtexi \"Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HDCAtexi \"Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HDCEAtexi \"Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HDCEAtexi \"Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HDCOAI \"hexadecenoyl coa cis trans isomerization\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HDCOAI \"hexadecenoyl coa cis trans isomerization\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEMEOS \"Heme O synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEMEOS \"Heme O synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPK1 \"LPS heptose kinase I LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPK1 \"LPS heptose kinase I LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPK2 \"LPS heptose kinase II LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPK2 \"LPS heptose kinase II LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPT1 \"heptosyltransferase I LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPT1 \"heptosyltransferase I LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPT2 \"heptosyltransferase II LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPT2 \"heptosyltransferase II LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPT3 \"heptosyltransferase III LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPT3 \"heptosyltransferase III LPS core synthesis \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEPT4 \"heptosyltransferase IV LPS core synthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEPT4 \"heptosyltransferase IV LPS core synthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HETZK \"hydroxyethylthiazole kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HETZK \"hydroxyethylthiazole kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEX1 \"hexokinase D glucoseATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEX1 \"hexokinase D glucoseATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEX4 \"hexokinase D mannoseATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEX7 \"hexokinase D fructoseATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HEX7 \"hexokinase D fructoseATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HG2abcpp \"Mercury Hg2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HG2abcpp \"Mercury Hg2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HG2tex \"mercury Hg2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HG2tex \"mercury Hg2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISTD \"histidinol dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISTD \"histidinol dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISTP \"histidinol phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISTP \"histidinol phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISTRS \"Histidyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISTRS \"Histidyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISabcpp \"L histidine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISabcpp \"L histidine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISt2rpp \"L histidine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISt2rpp \"L histidine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HIStex \"L histidine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HIStex \"L histidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HMBS \"hydroxymethylbilane synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HMBS \"hydroxymethylbilane synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HMPK1 \"hydroxymethylpyrimidine kinase ATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HMPK1 \"hydroxymethylpyrimidine kinase ATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HOMt2pp \"L homoserineserine efflux via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HOMt2pp \"L homoserineserine efflux via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HOMtex \"L homoserine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HOMtex \"L homoserine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HPPK2 \"6 hydroxymethyl dihydropterin pyrophosphokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HPPK2 \"6 hydroxymethyl dihydropterin pyrophosphokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HPPPNtex \"3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HPPPNtex \"3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HPYRI \"hydroxypyruvate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HPYRI \"hydroxypyruvate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HPYRRx \"Hydroxypyruvate reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HPYRRx \"Hydroxypyruvate reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HPYRRy \"Hydroxypyruvate reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HPYRRy \"Hydroxypyruvate reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HSDy \"homoserine dehydrogenase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HSDy \"homoserine dehydrogenase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HSK \"homoserine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HSK \"homoserine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HSST \"homoserine O succinyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HSST \"homoserine O succinyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HSTPT \"histidinol phosphate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HSTPT \"histidinol phosphate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HXAtex \"Hexanoate transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HXAtex \"Hexanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HXPRT \"hypoxanthine phosphoribosyltransferase Hypoxanthine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HXPRT \"hypoxanthine phosphoribosyltransferase Hypoxanthine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYPOE \"hypothetical enyme\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYXNtex \"Hypoxanthine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HYXNtex \"Hypoxanthine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYXNtpp \"Hypoxanthine transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Htex \"proton transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Htex \"proton transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICDHyr \"isocitrate dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICDHyr \"isocitrate dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICHORS \"isochorismate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICHORS \"isochorismate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICHORSi \"Isochorismate Synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICHORSi \"Isochorismate Synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICHORT \"isochorismatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICHORT \"isochorismatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICL \"Isocitrate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICL \"Isocitrate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IDOND \"L idonate 5 dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IDOND \"L idonate 5 dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IDOND2 \"L indonate 5 dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IDOND2 \"L indonate 5 dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IDONt2rpp \"L idonate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IDONt2rpp \"L idonate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IDONtex \"L idonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IDONtex \"L idonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IG3PS \"Imidazole glycerol 3 phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IG3PS \"Imidazole glycerol 3 phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IGPDH \"imidazoleglycerol phosphate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IGPDH \"imidazoleglycerol phosphate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IGPS \"indole 3 glycerol phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IGPS \"indole 3 glycerol phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ILETA \"isoleucine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ILETA \"isoleucine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ILETRS \"Isoleucyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ILETRS \"Isoleucyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ILEabcpp \"L isoleucine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ILEabcpp \"L isoleucine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ILEt2rpp \"L isoleucine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ILEt2rpp \"L isoleucine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ILEtex \"L isoleucine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ILEtex \"L isoleucine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IMPC \"IMP cyclohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IMPC \"IMP cyclohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IMPD \"IMP dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IMPD \"IMP dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IMPtex \"IMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IMPtex \"IMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INDOLEt2pp \"Indole transport via proton symport irreversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INDOLEt2pp \"Indole transport via proton symport irreversible periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INDOLEt2rpp \"Indole transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INDOLEt2rpp \"Indole transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INDOLEtex \"Indole transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INDOLEtex \"Indole transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INSH \"Inosine hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INSH \"Inosine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INSK \"insosine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INSK \"insosine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INSTtex \"inositol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INSTtex \"inositol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INSt2pp \"inosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INSt2pp \"inosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INSt2rpp \"inosine transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INSt2rpp \"inosine transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INStex \"inosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INStex \"inosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPDDI \"isopentenyl diphosphate D isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPDDI \"isopentenyl diphosphate D isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPDPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPDPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPMD \"3 isopropylmalate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPMD \"3 isopropylmalate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPPMIa \"3 isopropylmalate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPPMIa \"3 isopropylmalate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPPMIb \"2 isopropylmalate hydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPPMIb \"2 isopropylmalate hydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_IPPS \"2 isopropylmalate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_IPPS \"2 isopropylmalate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ISETACtex \"isethionate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ISETACtex \"isethionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_K2L4Aabcpp \"KDO 2 lipid IV A transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_K2L4Aabcpp \"KDO 2 lipid IV A transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_K2L4Atex \"KDO 2 lipid IV A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KARA1 \"ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KARA1 \"ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KARA2 \"ketol acid reductoisomerase 2 Acetolactate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KARA2 \"ketol acid reductoisomerase 2 Acetolactate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAS14 \"beta ketoacyl ACP synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAS14 \"beta ketoacyl ACP synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAS15 \"beta ketoacyl ACP synthase 2 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAS15 \"beta ketoacyl ACP synthase 2 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT1 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT1 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT2 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT2 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT3 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT3 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT4 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT4 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT5 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT5 \"3 ketoacyl CoA thiolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT6 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT6 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT7 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT7 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KAT8 \"3 ketoacyl CoA thiolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KAT8 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KDOCT2 \"3 deoxy manno octulosonate cytidylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KDOCT2 \"3 deoxy manno octulosonate cytidylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KDOPP \"3 deoxy manno octulosonate 8 phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KDOPP \"3 deoxy manno octulosonate 8 phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KDOPS \"3 deoxy D manno octulosonic acid 8 phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KDOPS \"3 deoxy D manno octulosonic acid 8 phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_KG6PDC \"3 keto L gulonate 6 phosphate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_KG6PDC \"3 keto L gulonate 6 phosphate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Kabcpp \"Potassium ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Kabcpp \"Potassium ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Kt2pp \"potassium transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Kt2pp \"potassium transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Kt3pp \"potassium transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Kt3pp \"potassium transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Ktex \"potassium transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Ktex \"potassium transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LA4NTpp \"4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LA4NTpp \"4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LADGMDH \"L alanyl gamma D glutamyl meso diaminopimelate hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LADGMDH \"L alanyl gamma D glutamyl meso diaminopimelate hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LALDO2x \"D LactaldehydeNAD 1 oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LALDO2x \"D LactaldehydeNAD 1 oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LALGP \"L alanyl gamma L glutamate peptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LALGP \"L alanyl gamma L glutamate peptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LCARR \"lacaldehyde reductase R propane 1 2 diol forming \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LCARS \"lacaldehyde reductase S propane 1 2 diol forming \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LCARS \"lacaldehyde reductase S propane 1 2 diol forming \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LCTStex \"Lactose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LCTStex \"Lactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LDH_D \"D lactate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LDH_D \"D lactate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LDH_D2 \"D lactate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LDH_D2 \"D lactate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUTAi \"leucine transaminase irreversible \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUTAi \"leucine transaminase irreversible \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUTRS \"Leucyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUTRS \"Leucyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUabcpp \"L leucine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUabcpp \"L leucine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUt2rpp \"L leucine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUt2rpp \"L leucine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUtex \"L leucine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUtex \"L leucine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LGTHL \"lactoylglutathione lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LGTHL \"lactoylglutathione lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LIPACabcpp \"lipid cold A transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LIPACabcpp \"lipid cold A transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LIPAabcpp \"lipid A transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LIPAabcpp \"lipid A transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LIPAtex \"lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPADSS \"Lipid A disaccaride synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPADSS \"Lipid A disaccaride synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A120pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A120pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A140pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A140pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A141pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A141pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A160pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A160pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A161pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A161pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A180pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A180pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1A181pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1A181pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E120pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E120pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E140pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E140pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E141pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E141pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E160pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E160pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E161pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E161pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E180pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E180pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1E181pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1E181pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G120pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G120pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G140pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G140pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G141pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G141pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G160pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C160  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G160pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G161pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G161pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G180pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G180pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL1G181pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL1G181pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A120 \"Lysophospholipase L2 2 acylglycerophosphotidate n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A120 \"Lysophospholipase L2 2 acylglycerophosphotidate n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A140 \"Lysophospholipase L2 2 acylglycerophosphotidate n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A140 \"Lysophospholipase L2 2 acylglycerophosphotidate n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A141 \"Lysophospholipase L2 2 acylglycerophosphotidate n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A141 \"Lysophospholipase L2 2 acylglycerophosphotidate n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A160 \"Lysophospholipase L2 2 acylglycerophosphotidate n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A160 \"Lysophospholipase L2 2 acylglycerophosphotidate n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A161 \"Lysophospholipase L2 2 acylglycerophosphotidate n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A161 \"Lysophospholipase L2 2 acylglycerophosphotidate n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A180 \"Lysophospholipase L2 2 acylglycerophosphotidate n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A180 \"Lysophospholipase L2 2 acylglycerophosphotidate n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2A181 \"Lysophospholipase L2 2 acylglycerophosphotidate n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2A181 \"Lysophospholipase L2 2 acylglycerophosphotidate n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATE181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATE181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2ATG181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2ATG181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E120 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E120 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E140 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E140 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E141 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E141 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E160 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E160 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E161 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E161 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E180 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E180 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2E181 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2E181 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G120 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G120 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G140 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G140 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G141 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G141 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G160 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G160 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G161 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G161 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G180 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G180 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LPLIPAL2G181 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LPLIPAL2G181 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LSERDHr \"L serine dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LSERDHr \"L serine dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYSDC \"lysine decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYSDC \"lysine decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYSTRS \"Lysyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYSTRS \"Lysyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYSabcpp \"L lysine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYSabcpp \"L lysine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYSt2pp \"L lysine transport in via proton symport periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYSt2pp \"L lysine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYSt3pp \"L lysine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYSt3pp \"L lysine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYStex \"L lysine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYStex \"L lysine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYXI \"Lyxose isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYXI \"Lyxose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYXt2pp \"L Lyxose transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYXt2pp \"L Lyxose transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LYXtex \"L Lyxose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LYXtex \"L Lyxose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_L_LACD2 \"L Lactate dehydrogenase ubiquinone \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_L_LACD2 \"L Lactate dehydrogenase ubiquinone \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_L_LACD3 \"L Lactate dehydrogenase menaquinone \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_L_LACD3 \"L Lactate dehydrogenase menaquinone \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_L_LACt2rpp \"L lactate reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_L_LACt2rpp \"L lactate reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_L_LACtex \"L lactate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_L_LACtex \"L lactate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_M1PD \"mannitol 1 phosphate 5 dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_M1PD \"mannitol 1 phosphate 5 dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MACPD \"Malonyl ACP decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MACPD \"Malonyl ACP decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALDt2_2pp \"D Malate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALDt2_2pp \"D Malate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALDtex \"D Malate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALDtex \"D Malate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALS \"malate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALS \"malate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTATr \"maltose O acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTATr \"maltose O acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTHXabcpp \"maltohexaose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTHXabcpp \"maltohexaose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTHXtexi \"maltohexaose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTHXtexi \"maltohexaose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTPTabcpp \"maltopentaose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTPTabcpp \"maltopentaose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTPTtexi \"maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTPTtexi \"maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTTRabcpp \"Maltotriose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTTRabcpp \"Maltotriose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTTRtexi \"Maltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTTRtexi \"Maltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTTTRabcpp \"maltotetraose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTTTRabcpp \"maltotetraose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTTTRtexi \"maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTTTRtexi \"maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTabcpp \"maltose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTabcpp \"maltose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTptspp \"maltose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTptspp \"maltose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALTtexi \"maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALTtexi \"maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALt2_2pp \"Malate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALt2_2pp \"Malate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALtex \"Malate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALtex \"Malate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MAN6PI \"mannose 6 phosphate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MAN6PI \"mannose 6 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MAN6Pt6_2pp \"Mannose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MAN6Pt6_2pp \"Mannose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MAN6Ptex \"Mannose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MAN6Ptex \"Mannose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MANGLYCtex \"2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MANGLYCtex \"2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MANptspp \"D mannose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MANptspp \"D mannose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MANtex \"D mannose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MANtex \"D mannose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCITD \"2 methylcitrate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCITD \"2 methylcitrate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCITL2 \"methylisocitrate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCITL2 \"methylisocitrate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCITS \"2 methylcitrate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCITS \"2 methylcitrate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCOATA \"Malonyl CoA ACP transacylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCOATA \"Malonyl CoA ACP transacylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCPST \"3 mercaptopyruvate sulfurtransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCPST \"3 mercaptopyruvate sulfurtransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCTP1App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCTP1App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCTP1Bpp \"murein crosslinking transpeptidase 1B A2pm A2pm  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCTP1Bpp \"murein crosslinking transpeptidase 1B A2pm A2pm  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MCTP2App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MCTP2App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDCP1pp \"murein D D carboxypeptidase murein5px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDCP1pp \"murein D D carboxypeptidase murein5px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDCP2pp \"murein D D carboxypeptidase murein5px4px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDCP2pp \"murein D D carboxypeptidase murein5px4px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDCP3pp \"murein D D carboxypeptidase murein5p5p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDCP3pp \"murein D D carboxypeptidase murein5p5p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDCP4pp \"murein D D carboxypeptidase murein5p4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDCP4pp \"murein D D carboxypeptidase murein5p4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDCP5pp \"murein D D carboxypeptidase murein5p3p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDCP5pp \"murein D D carboxypeptidase murein5p3p  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDEP1pp \"murein D D endopeptidase murein4px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDEP1pp \"murein D D endopeptidase murein4px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDEP2pp \"murein D D endopeptidase murein3px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDEP2pp \"murein D D endopeptidase murein3px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDEP3pp \"murein D D endopeptidase murein5px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDEP3pp \"murein D D endopeptidase murein5px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDDEP4pp \"murein D D endopeptidase murein4px4px4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDDEP4pp \"murein D D endopeptidase murein4px4px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDH \"malate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MDH \"malate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MDRPD \"5 Methylthio 5 deoxy D ribulose 1 phosphate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ME1 \"malic enzyme NAD \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ME1 \"malic enzyme NAD \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ME2 \"malic enzyme NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ME2 \"malic enzyme NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MECDPDH2 \"2C methyl D erythritol 2 4 cyclodiphosphate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MECDPDH2 \"2C methyl D erythritol 2 4 cyclodiphosphate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MECDPS \"2 C methyl D erythritol 2 4 cyclodiphosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MECDPS \"2 C methyl D erythritol 2 4 cyclodiphosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MELIBt2pp \"melibiose transport in via symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MELIBt2pp \"melibiose transport in via symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MELIBt3ipp \"melibiose transport in via antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MELIBt3ipp \"melibiose transport in via antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MELIBtex \"melibiose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MELIBtex \"melibiose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MEPCT \"2 C methyl D erythritol 4 phosphate cytidylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MEPCT \"2 C methyl D erythritol 4 phosphate cytidylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METAT \"methionine adenosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METAT \"methionine adenosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METDabcpp \"D methionine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METDabcpp \"D methionine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METDtex \"D methionine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METDtex \"D methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METOX1s \"methionine oxidation spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METOX1s \"methionine oxidation spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METOX2s \"methionine oxidation 2 spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METOX2s \"methionine oxidation 2 spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METS \"methionine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METS \"methionine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOX1abcpp \"L methionine S oxide transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOX1tex \"L methionine S oxide diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METSOX1tex \"L methionine S oxide diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOX2abcpp \"L methionine R oxide transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOX2tex \"L methionine R oxide diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METSOX2tex \"L methionine R oxide diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOXR1 \"L methionine S oxide reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METSOXR1 \"L methionine S oxide reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METSOXR2 \"L methionine R sulfoxide reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METSOXR2 \"L methionine R sulfoxide reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METTRS \"Methionyl tRNA synthetase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METTRS \"Methionyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METabcpp \"L methionine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METabcpp \"L methionine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_METtex \"L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_METtex \"L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MG2t3_2pp \"magnesium Mg2 transport inout via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MG2tex \"magnesium Mg2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MG2tex \"magnesium Mg2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MG2tpp \"magnesium 2 transport in via diffusion\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MG2tpp \"magnesium 2 transport in via diffusion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MGSA \"methylglyoxal synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MGSA \"methylglyoxal synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MI1PP \"myo inositol 1 phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MI1PP \"myo inositol 1 phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MICITD \"2 methylisocitrate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MICITD \"2 methylisocitrate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MINOHPtexi \"myo inositol phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDCP1App \"murein L D carboxypeptidase murein5px4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDCP1Bpp \"murein L D carboxypeptidase murein4p4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDCP2App \"murein L D carboxypeptidase murein5p5p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDCP2Bpp \"murein L D carboxypeptidase murein4p3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDCP3App \"murein L D carboxypeptidase murein5px3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDEP1pp \"murein L D endopeptidase murein3px3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLDEP2pp \"murein L D endopeptidase murein5px3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTG1 \"Maltodextrin glucosidase maltotriose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTG1 \"Maltodextrin glucosidase maltotriose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTG2 \"Maltodextrin glucosidase maltotetraose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTG2 \"Maltodextrin glucosidase maltotetraose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTG3 \"Maltodextrin glucosidase maltopentaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTG3 \"Maltodextrin glucosidase maltopentaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTG4 \"Maltodextrin glucosidase maltohexaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTG4 \"Maltodextrin glucosidase maltohexaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTG5 \"Maltodextrin glucosidase maltoheptaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTG5 \"Maltodextrin glucosidase maltoheptaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTGY1pp \"murein lytic transglycosylase murein4p4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTGY1pp \"murein lytic transglycosylase murein4p4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTGY2pp \"murein lytic transglycosylase murein4p3p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTGY2pp \"murein lytic transglycosylase murein4p3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTGY3pp \"murein lytic transglycosylase murein3p3p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTGY3pp \"murein lytic transglycosylase murein3p3p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTGY4pp \"murein lytic transglycosylase murein4px4p4p  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTGY4pp \"murein lytic transglycosylase murein4px4p4p  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTP1 \"Maltodextrin phosphorylase maltopentaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTP1 \"Maltodextrin phosphorylase maltopentaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTP2 \"Maltodextrin phosphorylase maltohexaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTP2 \"Maltodextrin phosphorylase maltohexaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MLTP3 \"Maltodextrin phosphorylase maltoheptaose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MLTP3 \"Maltodextrin phosphorylase maltoheptaose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MME \"methylmalonyl CoA epimerase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MMETtex \"S methyl L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MMETtex \"S methyl L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MN2t3pp \"manganese Mn2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MN2t3pp \"manganese Mn2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MN2tpp \"manganese transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MN2tpp \"manganese transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MN6PP \"mannose 6 phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MN6PP \"mannose 6 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MNLptspp \"mannitol transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MNLptspp \"mannitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MNLtex \"mannitol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MNLtex \"mannitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MNt2pp \"manganese Mn2 transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MNt2pp \"manganese Mn2 transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MNtex \"Manganese Mn2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MNtex \"Manganese Mn2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOAT \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOAT \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOAT2 \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOAT2 \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOAT3C \"3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOAT3C \"3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOBDabcpp \"molybdate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOBDabcpp \"molybdate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOBDtex \"molybdate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOBDtex \"molybdate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MOHMT \"3 methyl 2 oxobutanoate hydroxymethyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MOHMT \"3 methyl 2 oxobutanoate hydroxymethyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MPTG \"murein polymerizing transglycosylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MPTG \"murein polymerizing transglycosylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MPTG2 \"murein polymerizing transglycosylase 2 three linked units \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MPTG2 \"murein polymerizing transglycosylase 2 three linked units \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MSO3tex \"methanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MSO3tex \"methanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTAN \"methylthioadenosine nucleosidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MTAN \"methylthioadenosine nucleosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTHFC \"methenyltetrahydrofolate cyclohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MTHFC \"methenyltetrahydrofolate cyclohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTHFD \"methylenetetrahydrofolate dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MTHFD \"methylenetetrahydrofolate dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTHFR2 \"5 10 methylenetetrahydrofolate reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MTHFR2 \"5 10 methylenetetrahydrofolate reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTRI \"5 methylthioribose 1 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTRK \"5 methylthioribose kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MTRPOX \"N methyltryptophan oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MTRPOX \"N methyltryptophan oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_N2Otex \"nitrious oxide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_N2Otex \"nitrious oxide transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_N2Otpp \"nitrious oxide transport diffusion \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_N2Otpp \"nitrious oxide transport diffusion \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NACODA \"N acetylornithine deacetylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NACODA \"N acetylornithine deacetylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NACtex \"Nicotinic acid transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NACtex \"Nicotinic acid transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NACtpp \"Nicotinic acid uptake periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADDP \"NAD diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADDP \"NAD diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH10 \"NADH dehydrogenase menaquinone 8 0 protons \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH10 \"NADH dehydrogenase menaquinone 8 0 protons \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH16pp \"NADH dehydrogenase ubiquinone 8 3 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH16pp \"NADH dehydrogenase ubiquinone 8 3 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH17pp \"NADH dehydrogenase menaquinone 8 3 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH17pp \"NADH dehydrogenase menaquinone 8 3 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH18pp \"NADH dehydrogenase demethylmenaquinone 8 3 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH18pp \"NADH dehydrogenase demethylmenaquinone 8 3 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH5 \"NADH dehydrogenase ubiquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH5 \"NADH dehydrogenase ubiquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADH9 \"NADH dehydrogenase demethylmenaquinone 8 0 protons \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADH9 \"NADH dehydrogenase demethylmenaquinone 8 0 protons \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADK \"NAD kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADK \"NAD kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADN \"NAD nucleosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADPHQR2 \"NADPH Quinone Reductase Ubiquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADPHQR2 \"NADPH Quinone Reductase Ubiquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADPHQR3 \"NADPH Quinone Reductase Menaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADPHQR3 \"NADPH Quinone Reductase Menaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADPHQR4 \"NADPH Quinone Reductase 2 Demethylmenaquinone 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADPHQR4 \"NADPH Quinone Reductase 2 Demethylmenaquinone 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADPPPS \"NADP phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADS1 \"NAD synthase nh3 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADS1 \"NAD synthase nh3 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NADTRHD \"NAD transhydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NADTRHD \"NAD transhydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NAMNPP \"nicotinic acid mononucleotide pyrophosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NAMNPP \"nicotinic acid mononucleotide pyrophosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NAt3_1p5pp \"sodium proton antiporter HNA is 15  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NAt3_1p5pp \"sodium proton antiporter HNA is 15  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NAt3_2pp \"sodium proton antiporter HNA is 2  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NAt3_2pp \"sodium proton antiporter HNA is 2  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NAtex \"sodium transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NAtex \"sodium transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK1 \"nucleoside diphosphate kinase ATPGDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK1 \"nucleoside diphosphate kinase ATPGDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK2 \"nucleoside diphosphate kinase ATPUDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK2 \"nucleoside diphosphate kinase ATPUDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK3 \"nucleoside diphosphate kinase ATPCDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK3 \"nucleoside diphosphate kinase ATPCDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK4 \"nucleoside diphosphate kinase ATPdTDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK4 \"nucleoside diphosphate kinase ATPdTDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK5 \"nucleoside diphosphate kinase ATPdGDP \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK5 \"nucleoside diphosphate kinase ATPdGDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK6 \"nucleoside diphosphate kinase ATPdUDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK6 \"nucleoside diphosphate kinase ATPdUDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK7 \"nucleoside diphosphate kinase ATPdCDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK7 \"nucleoside diphosphate kinase ATPdCDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NDPK8 \"nucleoside diphosphate kinase ATPdADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NDPK8 \"nucleoside diphosphate kinase ATPdADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NH4tex \"ammonia transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NH4tex \"ammonia transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NH4tpp \"ammonia reversible transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NH4tpp \"ammonia reversible transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NHFRBO \"NADHflavorubredoxin oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NHFRBO \"NADHflavorubredoxin oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NI2abcpp \"Nickle Ni2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NI2abcpp \"Nickle Ni2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NI2t3pp \"nickle Ni2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NI2t3pp \"nickle Ni2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NI2tex \"nickel transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NI2tex \"nickel transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNAT \"nicotinamide nucleotide adenylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NMNAT \"nicotinamide nucleotide adenylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNDA \"nicotinamide nucleotide amidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNN \"NMN nucleosidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNPtpp \"NMN permease periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NMNPtpp \"NMN permease periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNt7pp \"NMN transport via NMN glycohydrolase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNtex \"NMN transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NMNtex \"NMN transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NNAM \"nicotinamidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NNAM \"nicotinamidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NNATr \"nicotinate nucleotide adenylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NNATr \"nicotinate nucleotide adenylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NNDPR \"nicotinate nucleotide diphosphorylase carboxylating \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NNDPR \"nicotinate nucleotide diphosphorylase carboxylating \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO2t2rpp \"nitrite transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO2t2rpp \"nitrite transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO2tex \"nitrite transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO2tex \"nitrite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3R1bpp \"Nitrate reductase Ubiquinol 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3R1bpp \"Nitrate reductase Ubiquinol 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3R1pp \"Nitrate reductase Ubiquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3R1pp \"Nitrate reductase Ubiquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3R2bpp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3R2bpp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3R2pp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3R2pp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3t7pp \"nitrate transport in via nitrite antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3t7pp \"nitrate transport in via nitrite antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NO3tex \"nitrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NO3tex \"nitrate transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NODOx \"nitric oxide dioxygenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NODOx \"nitric oxide dioxygenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NODOy \"nitric oxide dioxygenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NODOy \"nitric oxide dioxygenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NOtex \"nitric oxide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NOtex \"nitric oxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NOtpp \"NO transport diffusion \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NOtpp \"NO transport diffusion \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NPHS \"naphthoate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NPHS \"naphthoate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD1 \"5 nucleotidase dUMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD1 \"5 nucleotidase dUMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD10 \"5 nucleotidase XMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD10 \"5 nucleotidase XMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD10pp \"5 nucleotidase XMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD10pp \"5 nucleotidase XMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD11 \"5 nucleotidase IMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD11 \"5 nucleotidase IMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD11pp \"5 nucleotidase IMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD11pp \"5 nucleotidase IMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD12 \"5 nucleotidase dIMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD12 \"5 nucleotidase dIMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD12pp \"5 nucleotidase dIMP  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD12pp \"5 nucleotidase dIMP  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD1pp \"5 nucleotidase dUMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD1pp \"5 nucleotidase dUMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD2 \"5 nucleotidase UMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD2 \"5 nucleotidase UMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD2pp \"5 nucleotidase UMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD2pp \"5 nucleotidase UMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD3 \"5 nucleotidase dCMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD3 \"5 nucleotidase dCMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD3pp \"5 nucleotidase dCMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD3pp \"5 nucleotidase dCMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD4 \"5 nucleotidase CMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD4 \"5 nucleotidase CMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD4pp \"5 nucleotidase CMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD4pp \"5 nucleotidase CMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD5 \"5 nucleotidase dTMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD5 \"5 nucleotidase dTMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD5pp \"5 nucleotidase dTMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD5pp \"5 nucleotidase dTMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD6 \"5 nucleotidase dAMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD6 \"5 nucleotidase dAMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD6pp \"5 nucleotidase dAMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD6pp \"5 nucleotidase dAMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD7 \"5 nucleotidase AMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD7 \"5 nucleotidase AMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD7pp \"5 nucleotidase AMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD7pp \"5 nucleotidase AMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD8 \"5 nucleotidase dGMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD8 \"5 nucleotidase dGMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD8pp \"5 nucleotidase dGMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD8pp \"5 nucleotidase dGMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD9 \"5 nucleotidase GMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD9 \"5 nucleotidase GMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTD9pp \"5 nucleotidase GMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTD9pp \"5 nucleotidase GMP \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP1 \"nucleoside triphosphatase ATP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP1 \"nucleoside triphosphatase ATP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP10 \"nucleoside triphosphatase ITP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP10 \"nucleoside triphosphatase ITP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP11 \"nucleoside triphosphatase dITP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP11 \"nucleoside triphosphatase dITP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP12 \"nucleoside triphosphatase XTP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP12 \"nucleoside triphosphatase XTP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP3 \"nucleoside triphosphatase GTP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP3 \"nucleoside triphosphatase GTP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTP5 \"nucleoside triphosphatase CTP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTP5 \"nucleoside triphosphatase CTP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP1 \"Nucleoside triphosphate pyrophosphorylase dgtp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP1 \"Nucleoside triphosphate pyrophosphorylase dgtp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP10 \"Nucleoside triphosphate pyrophosphorylase ditp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP10 \"Nucleoside triphosphate pyrophosphorylase ditp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP11 \"Nucleoside triphosphate pyrophosphorylase xtp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP11 \"Nucleoside triphosphate pyrophosphorylase xtp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP2 \"Nucleoside triphosphate pyrophosphorylase gtp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP2 \"Nucleoside triphosphate pyrophosphorylase gtp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP3 \"Nucleoside triphosphate pyrophosphorylase dctp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP3 \"Nucleoside triphosphate pyrophosphorylase dctp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP4 \"Nucleoside triphosphate pyrophosphorylase ctp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP4 \"Nucleoside triphosphate pyrophosphorylase ctp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP5 \"Nucleoside triphosphate pyrophosphorylase datp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP5 \"Nucleoside triphosphate pyrophosphorylase datp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP6 \"Nucleoside triphosphate pyrophosphorylase atp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP6 \"Nucleoside triphosphate pyrophosphorylase atp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP7 \"Nucleoside triphosphate pyrophosphorylase dttp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP7 \"Nucleoside triphosphate pyrophosphorylase dttp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP8 \"Nucleoside triphosphate pyrophosphorylase utp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP8 \"Nucleoside triphosphate pyrophosphorylase utp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPP9 \"Nucleoside triphosphate pyrophosphorylase itp \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPP9 \"Nucleoside triphosphate pyrophosphorylase itp \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPTP1 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPTP1 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTPTP2 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTPTP2 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTRIR2x \"nitrite Reductase NADH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTRIR2x \"nitrite Reductase NADH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTRIR3pp \"nitrite Reductase Ubiquinole 8 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTRIR3pp \"nitrite Reductase Ubiquinole 8 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NTRIR4pp \"nitrite Reductase Menaquinole 8 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NTRIR4pp \"nitrite Reductase Menaquinole 8 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_O2Stex \"superoxide anion transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_O2Stex \"superoxide anion transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_O2tex \"oxygen transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_O2tex \"oxygen transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_O2tpp \"o2 transport via diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_O2tpp \"o2 transport via diffusion periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAADC \"oxaloacetate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAADC \"oxaloacetate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OBTFL \"2 Oxobutanoate formate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OBTFL \"2 Oxobutanoate formate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCDCAtexi \"Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCDCAtexi \"Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCDCEAtexi \"Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCDCEAtexi \"Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCTAtex \"Octanoate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCTAtex \"Octanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCTDPS \"Octaprenyl pyrophosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCTDPS \"Octaprenyl pyrophosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ODECOAI \"Octadecenoyl coa cis trans isomerization\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ODECOAI \"Octadecenoyl coa cis trans isomerization\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OHPBAT \"O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OHPBAT \"O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OHPHM \"2 octaprenyl 6 hydroxyphenol methylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OHPHM \"2 octaprenyl 6 hydroxyphenol methylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMBZLM \"2 Octaprenyl 6 methoxy benzoquinol methylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMBZLM \"2 Octaprenyl 6 methoxy benzoquinol methylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMCDC \"2 Oxo 4 methyl 3 carboxypentanoate decarboxylation\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMCDC \"2 Oxo 4 methyl 3 carboxypentanoate decarboxylation\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMMBLHX \"2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMMBLHX \"2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMMBLHX3 \"2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMPDC \"orotidine 5 phosphate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMPDC \"orotidine 5 phosphate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMPHHX \"2 octaprenyl 6 methoxyphenol hydroxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMPHHX \"2 octaprenyl 6 methoxyphenol hydroxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMPHHX3 \"2 octaprenyl 6 methoxyphenol hydroxylase anaerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OPHBDC \"Octaprenyl hydroxybenzoate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OPHBDC \"Octaprenyl hydroxybenzoate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OPHHX \"2 Octaprenylphenol hydroxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OPHHX \"2 Octaprenylphenol hydroxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OPHHX3 \"2 Octaprenylphenol hydroxylase anaerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ORNDC \"Ornithine Decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ORNDC \"Ornithine Decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ORNabcpp \"ornithine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ORNabcpp \"ornithine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ORNtex \"ornithine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ORNtex \"ornithine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OROTt2_2pp \"Orotate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OROTt2_2pp \"Orotate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAAt2_2pp \"Oxaloacetate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAAt2_2pp \"Oxaloacetate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OROTtex \"Orotate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OROTtex \"Orotate transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAAtex \"Oxaloacetate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAAtex \"Oxaloacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ORPT \"orotate phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ORPT \"orotate phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OXAMTC \"oxamate transcarbamoylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OXGDC2 \"2 oxoglutarate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OXGDC2 \"2 oxoglutarate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_P5CD \"1 pyrroline 5 carboxylate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_P5CD \"1 pyrroline 5 carboxylate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_P5CR \"pyrroline 5 carboxylate reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_P5CR \"pyrroline 5 carboxylate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA120abcpp \"phosphatidate transport via ABC system n C120 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA120abcpp \"phosphatidate transport via ABC system n C120 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA140abcpp \"phosphatidate transport via ABC system n C140 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA140abcpp \"phosphatidate transport via ABC system n C140 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA141abcpp \"phosphatidate transport via ABC system n C141 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA141abcpp \"phosphatidate transport via ABC system n C141 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA160abcpp \"phosphatidate transport via ABC system n C160 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA160abcpp \"phosphatidate transport via ABC system n C160 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA161abcpp \"phosphatidate transport via ABC system n C161 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA161abcpp \"phosphatidate transport via ABC system n C161 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA180abcpp \"phosphatidate transport via ABC system n C180 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA180abcpp \"phosphatidate transport via ABC system n C180 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PA181abcpp \"phosphatidate transport via ABC system n C181 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PA181abcpp \"phosphatidate transport via ABC system n C181 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PACALDt2rpp \"phenylacetaldehyde reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PACALDtex \"phenethylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PACALDtex \"phenethylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PANTS \"pantothenate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PANTS \"pantothenate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA120 \"Phosphatidate phosphatase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA120 \"Phosphatidate phosphatase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA120pp \"Phosphatidate phosphatase periplasmic n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA120pp \"Phosphatidate phosphatase periplasmic n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA140 \"Phosphatidate phosphatase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA140 \"Phosphatidate phosphatase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA140pp \"Phosphatidate phosphatase periplasmic n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA140pp \"Phosphatidate phosphatase periplasmic n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA141 \"Phosphatidate phosphatase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA141 \"Phosphatidate phosphatase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA141pp \"Phosphatidate phosphatase periplasmic n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA141pp \"Phosphatidate phosphatase periplasmic n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA160 \"Phosphatidate phosphatase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA160 \"Phosphatidate phosphatase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA160pp \"Phosphatidate phosphatase periplasmic n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA160pp \"Phosphatidate phosphatase periplasmic n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA161 \"Phosphatidate phosphatase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA161 \"Phosphatidate phosphatase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA161pp \"Phosphatidate phosphatase periplasmic n C161 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA161pp \"Phosphatidate phosphatase periplasmic n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA180 \"Phosphatidate phosphatase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA180 \"Phosphatidate phosphatase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA180pp \"Phosphatidate phosphatase periplasmic n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA180pp \"Phosphatidate phosphatase periplasmic n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA181 \"Phosphatidate phosphatase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA181 \"Phosphatidate phosphatase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPA181pp \"Phosphatidate phosphatase periplasmic n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPA181pp \"Phosphatidate phosphatase periplasmic n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPPT3 \"phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPPT3 \"phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPSR \"phosphoadenylyl sulfate reductase thioredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPSR \"phosphoadenylyl sulfate reductase thioredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PAPSR2 \"phosphoadenylyl sulfate reductase glutaredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PAPSR2 \"phosphoadenylyl sulfate reductase glutaredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PDH \"pyruvate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PDH \"pyruvate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PDX5PO2 \"pyridoxine 5 phosphate oxidase anaerboic\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PDX5POi \"pyridoxine 5 phosphate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PDX5POi \"pyridoxine 5 phosphate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PDX5PS \"Pyridoxine 5 phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PDX5PS \"Pyridoxine 5 phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PDXPP \"Pyridoxine 5 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE120abcpp \"phosphatidylethanolamine transport via ABC system n C120 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE120abcpp \"phosphatidylethanolamine transport via ABC system n C120 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE140abcpp \"phosphatidylethanolamine transport via ABC system n C140 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE140abcpp \"phosphatidylethanolamine transport via ABC system n C140 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE141abcpp \"phosphatidylethanolamine transport via ABC system n C141 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE141abcpp \"phosphatidylethanolamine transport via ABC system n C141 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE160abcpp \"phosphatidylethanolamine transport via ABC system n C160 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE160abcpp \"phosphatidylethanolamine transport via ABC system n C160 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE161abcpp \"phosphatidylethanolamine transport via ABC system n C161 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE161abcpp \"phosphatidylethanolamine transport via ABC system n C161 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE180abcpp \"phosphatidylethanolamine transport via ABC system n C180 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE180abcpp \"phosphatidylethanolamine transport via ABC system n C180 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PE181abcpp \"phosphatidylethanolamine transport via ABC system n C181 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PE181abcpp \"phosphatidylethanolamine transport via ABC system n C181 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PEAMNtex \"phenethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PEAMNtex \"phenethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PERD \"Erythronate 4 phosphate 4per dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PERD \"Erythronate 4 phosphate 4per dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PETNT161pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PETNT161pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PETNT181pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PETNT181pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PFK \"phosphofructokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PFK \"phosphofructokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PFK_2 \"Phosphofructokinase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PFK_2 \"Phosphofructokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PFL \"pyruvate formate lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PFL \"pyruvate formate lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG120abcpp \"phosphatidylglycerol transport via ABC system n C120 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG120abcpp \"phosphatidylglycerol transport via ABC system n C120 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG140abcpp \"phosphatidylglycerol transport via ABC system n C140 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG140abcpp \"phosphatidylglycerol transport via ABC system n C140 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG141abcpp \"phosphatidylglycerol transport via ABC system n C141 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG141abcpp \"phosphatidylglycerol transport via ABC system n C141 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG160abcpp \"phosphatidylglycerol transport via ABC system n C160 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG160abcpp \"phosphatidylglycerol transport via ABC system n C160 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG161abcpp \"phosphatidylglycerol transport via ABC system n C161 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG161abcpp \"phosphatidylglycerol transport via ABC system n C161 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG180abcpp \"phosphatidylglycerol transport via ABC system n C180 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG180abcpp \"phosphatidylglycerol transport via ABC system n C180 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PG181abcpp \"phosphatidylglycerol transport via ABC system n C181 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PG181abcpp \"phosphatidylglycerol transport via ABC system n C181 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGAMT \"phosphoglucosamine mutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGAMT \"phosphoglucosamine mutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGCD \"phosphoglycerate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGCD \"phosphoglycerate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGI \"glucose 6 phosphate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGI \"glucose 6 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGK \"phosphoglycerate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGK \"phosphoglycerate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGL \"6 phosphogluconolactonase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGL \"6 phosphogluconolactonase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGLYCP \"Phosphoglycolate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGLYCP \"Phosphoglycolate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGM \"phosphoglycerate mutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGM \"phosphoglycerate mutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGMT \"phosphoglucomutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGMT \"phosphoglucomutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP120abcpp \"phosphatidylglycerophosphate transport via ABC system n C120 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP120abcpp \"phosphatidylglycerophosphate transport via ABC system n C120 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP140abcpp \"phosphatidylglycerophosphate transport via ABC system n C140 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP140abcpp \"phosphatidylglycerophosphate transport via ABC system n C140 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP141abcpp \"phosphatidylglycerophosphate transport via ABC system n C141 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP141abcpp \"phosphatidylglycerophosphate transport via ABC system n C141 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP160abcpp \"phosphatidylglycerophosphate transport via ABC system n C160 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP160abcpp \"phosphatidylglycerophosphate transport via ABC system n C160 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP161abcpp \"phosphatidylglycerophosphate transport via ABC system n C161 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP161abcpp \"phosphatidylglycerophosphate transport via ABC system n C161 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP180abcpp \"phosphatidylglycerophosphate transport via ABC system n C180 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP180abcpp \"phosphatidylglycerophosphate transport via ABC system n C180 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGP181abcpp \"phosphatidylglycerophosphate transport via ABC system n C181 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGP181abcpp \"phosphatidylglycerophosphate transport via ABC system n C181 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP120 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP120 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP120pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP120pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP140 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP140 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP140pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP140pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP141 \"phosphatidylglycerol phosphate phosphatase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP141 \"phosphatidylglycerol phosphate phosphatase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP141pp \"phosphatidylglycerol phosphate phosphatase periplasm n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP141pp \"phosphatidylglycerol phosphate phosphatase periplasm n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP160 \"phosphatidylglycerol phosphate phosphatase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP160 \"phosphatidylglycerol phosphate phosphatase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP160pp \"phosphatidylglycerol phosphate phosphatase periplasm n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP160pp \"phosphatidylglycerol phosphate phosphatase periplasm n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP161 \"phosphatidylglycerol phosphate phosphatase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP161 \"phosphatidylglycerol phosphate phosphatase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP161pp \"phosphatidylglycerol phosphate phosphatase periplasm n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP161pp \"phosphatidylglycerol phosphate phosphatase periplasm n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP180 \"phosphatidylglycerol phosphate phosphatase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP180 \"phosphatidylglycerol phosphate phosphatase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP180pp \"phosphatidylglycerol phosphate phosphatase periplasm n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP180pp \"phosphatidylglycerol phosphate phosphatase periplasm n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP181 \"phosphatidylglycerol phosphate phosphatase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP181 \"phosphatidylglycerol phosphate phosphatase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGPP181pp \"phosphatidylglycerol phosphate phosphatase periplasm n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGPP181pp \"phosphatidylglycerol phosphate phosphatase periplasm n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA120 \"Phosphatidylglycerol synthase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA120 \"Phosphatidylglycerol synthase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA140 \"Phosphatidylglycerol synthase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA140 \"Phosphatidylglycerol synthase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA141 \"Phosphatidylglycerol synthase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA141 \"Phosphatidylglycerol synthase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA160 \"Phosphatidylglycerol synthase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA160 \"Phosphatidylglycerol synthase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA161 \"Phosphatidylglycerol synthase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA161 \"Phosphatidylglycerol synthase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA180 \"Phosphatidylglycerol synthase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA180 \"Phosphatidylglycerol synthase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PGSA181 \"Phosphatidylglycerol synthase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PGSA181 \"Phosphatidylglycerol synthase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHEMEabcpp \"protoheme transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PHEMEabcpp \"protoheme transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHEMEtiex \"protoheme transport irreversible out via diffusion periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHETA1 \"phenylalanine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PHETA1 \"phenylalanine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHETRS \"Phenylalanyl tRNA synthetase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PHETRS \"Phenylalanyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHEt2rpp \"L phenylalanine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PHEt2rpp \"L phenylalanine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PHEtex \"L phenylalanine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PHEtex \"L phenylalanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PIt2rpp \"phosphate reversible transport via symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PIt2rpp \"phosphate reversible transport via symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PItex \"phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PItex \"phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PIuabcpp \"phosphate transport via ABC system uptake periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PIuabcpp \"phosphate transport via ABC system uptake periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A120pp \"Phospholipase A1 phosphatidate n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A120pp \"Phospholipase A1 phosphatidate n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A140pp \"Phospholipase A1 phosphatidate n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A140pp \"Phospholipase A1 phosphatidate n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A141pp \"Phospholipase A1 phosphatidate n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A141pp \"Phospholipase A1 phosphatidate n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A160pp \"Phospholipase A1 phosphatidate n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A160pp \"Phospholipase A1 phosphatidate n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A161pp \"Phospholipase A1 phosphatidate n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A161pp \"Phospholipase A1 phosphatidate n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A180pp \"Phospholipase A1 phosphatidate n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A180pp \"Phospholipase A1 phosphatidate n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1A181pp \"Phospholipase A1 phosphatidate n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1A181pp \"Phospholipase A1 phosphatidate n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E120pp \"Phospholipase A1 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E120pp \"Phospholipase A1 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E140pp \"Phospholipase A1 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E140pp \"Phospholipase A1 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E141pp \"Phospholipase A1 phosphatidylethanolamine n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E141pp \"Phospholipase A1 phosphatidylethanolamine n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E160pp \"Phospholipase A1 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E160pp \"Phospholipase A1 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E161pp \"Phospholipase A1 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E161pp \"Phospholipase A1 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E180pp \"Phospholipase A1 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E180pp \"Phospholipase A1 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1E181pp \"Phospholipase A1 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1E181pp \"Phospholipase A1 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G120pp \"Phospholipase A1 phosphatidylglycerol n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G120pp \"Phospholipase A1 phosphatidylglycerol n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G140pp \"Phospholipase A1 phosphatidylglycerol n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G140pp \"Phospholipase A1 phosphatidylglycerol n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G141pp \"Phospholipase A1 phosphatidylglycerol n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G141pp \"Phospholipase A1 phosphatidylglycerol n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G160pp \"Phospholipase A1 phosphatidylglycerol n C160  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G160pp \"Phospholipase A1 phosphatidylglycerol n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G161pp \"Phospholipase A1 phosphatidylglycerol n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G161pp \"Phospholipase A1 phosphatidylglycerol n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G180pp \"Phospholipase A1 phosphatidylglycerol n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G180pp \"Phospholipase A1 phosphatidylglycerol n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA1G181pp \"Phospholipase A1 phosphatidylglycerol n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA1G181pp \"Phospholipase A1 phosphatidylglycerol n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A120pp \"Phospholipase A2 phosphatidate n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A120pp \"Phospholipase A2 phosphatidate n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A140pp \"Phospholipase A2 phosphatidate n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A140pp \"Phospholipase A2 phosphatidate n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A141pp \"Phospholipase A2 phosphatidate n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A141pp \"Phospholipase A2 phosphatidate n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A160pp \"Phospholipase A2 phosphatidate n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A160pp \"Phospholipase A2 phosphatidate n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A161pp \"Phospholipase A2 phosphatidate n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A161pp \"Phospholipase A2 phosphatidate n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A180pp \"Phospholipase A2 phosphatidate n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A180pp \"Phospholipase A2 phosphatidate n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2A181pp \"Phospholipase A2 phosphatidate n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2A181pp \"Phospholipase A2 phosphatidate n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E120pp \"Phospholipase A2 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E120pp \"Phospholipase A2 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E140pp \"Phospholipase A2 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E140pp \"Phospholipase A2 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E141pp \"Phospholipase A2 phosphatidylethanolamine n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E141pp \"Phospholipase A2 phosphatidylethanolamine n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E160pp \"Phospholipase A2 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E160pp \"Phospholipase A2 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E161pp \"Phospholipase A2 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E161pp \"Phospholipase A2 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E180pp \"Phospholipase A2 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E180pp \"Phospholipase A2 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2E181pp \"Phospholipase A2 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2E181pp \"Phospholipase A2 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G120pp \"Phospholipase A2 phosphatidylglycerol n C120  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G120pp \"Phospholipase A2 phosphatidylglycerol n C120  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G140pp \"Phospholipase A2 phosphatidylglycerol n C140  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G140pp \"Phospholipase A2 phosphatidylglycerol n C140  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G141pp \"Phospholipase A2 phosphatidylglycerol n C141  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G141pp \"Phospholipase A2 phosphatidylglycerol n C141  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G160pp \"Phospholipase A2 phosphatidylglycerol n C160  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G160pp \"Phospholipase A2 phosphatidylglycerol n C160  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G161pp \"Phospholipase A2 phosphatidylglycerol n C161  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G161pp \"Phospholipase A2 phosphatidylglycerol n C161  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G180pp \"Phospholipase A2 phosphatidylglycerol n C180  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G180pp \"Phospholipase A2 phosphatidylglycerol n C180  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PLIPA2G181pp \"Phospholipase A2 phosphatidylglycerol n C181  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PLIPA2G181pp \"Phospholipase A2 phosphatidylglycerol n C181  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PMDPHT \"pyrimidine phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PMPK \"phosphomethylpyrimidine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PMPK \"phosphomethylpyrimidine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PNTK \"pantothenate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PNTK \"pantothenate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PNTOt4pp \"Pantothenate sodium symporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PNTOt4pp \"Pantothenate sodium symporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PNTOtex \"Pantothenate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PNTOtex \"Pantothenate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_POX \"pyruvate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_POX \"pyruvate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPA \"inorganic diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPA \"inorganic diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPA2 \"inorganic triphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPA2 \"inorganic triphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPAKr \"Propionate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPAKr \"Propionate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPALtex \"propanal transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPALtex \"propanal transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPALtpp \"propanal transport via channel periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPAt4pp \"NaPropionate symporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPAt4pp \"NaPropionate symporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPAtex \"propionate transport via diffusion\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPAtex \"propionate transport via diffusion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPBNGS \"porphobilinogen synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPBNGS \"porphobilinogen synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPC \"phosphoenolpyruvate carboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPC \"phosphoenolpyruvate carboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPCDC \"phosphopantothenoylcysteine decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPCDC \"phosphopantothenoylcysteine decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPCK \"phosphoenolpyruvate carboxykinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPCK \"phosphoenolpyruvate carboxykinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPGPPDP \"guanosine 3 5 bis diphosphate 3 diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPGPPDP \"guanosine 3 5 bis diphosphate 3 diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPK2r \"polyphosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPK2r \"polyphosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPKr \"polyphosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPKr \"polyphosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPM \"phosphopentomutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPM \"phosphopentomutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPM2 \"phosphopentomutase 2 deoxyribose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPM2 \"phosphopentomutase 2 deoxyribose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPNCL2 \"phosphopantothenate cysteine ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPNCL2 \"phosphopantothenate cysteine ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPND \"prephenate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPND \"prephenate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPNDH \"prephenate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPNDH \"prephenate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPPGO \"protoporphyrinogen oxidase aerobic \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPPGO \"protoporphyrinogen oxidase aerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPPGO3 \"protoporphyrinogen oxidase anaerobic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPPGO3 \"protoporphyrinogen oxidase anaerobic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPPNt2rpp \"3 phenylpropionate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPPNt2rpp \"3 phenylpropionate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPPNtex \"3 phenylpropionate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPPNtex \"3 phenylpropionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPS \"phosphoenolpyruvate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPS \"phosphoenolpyruvate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PPTtex \"Phosphonate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PPTtex \"Phosphonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRAGSr \"phosphoribosylglycinamide synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRAGSr \"phosphoribosylglycinamide synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRAIS \"phosphoribosylaminoimidazole synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRAIS \"phosphoribosylaminoimidazole synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRAIi \"phosphoribosylanthranilate isomerase irreversible \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRAIi \"phosphoribosylanthranilate isomerase irreversible \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRAMPC \"phosphoribosyl AMP cyclohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRAMPC \"phosphoribosyl AMP cyclohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRASCSi \"phosphoribosylaminoimidazolesuccinocarboxamide synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRASCSi \"phosphoribosylaminoimidazolesuccinocarboxamide synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRATPP \"phosphoribosyl ATP pyrophosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRATPP \"phosphoribosyl ATP pyrophosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRFGS \"phosphoribosylformylglycinamidine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRFGS \"phosphoribosylformylglycinamidine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRMICI \"1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRMICI \"1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROD2 \"Proline dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROD2 \"Proline dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROGLYabcpp \"L Prolinylglycine Pro Gly transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROGLYabcpp \"L Prolinylglycine Pro Gly transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROGLYtex \"L Prolinylglycine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROGLYtex \"L Prolinylglycine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROTRS \"Prolyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROTRS \"Prolyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROabcpp \"L proline transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROabcpp \"L proline transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROt4pp \"NaProline L symporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROt4pp \"NaProline L symporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROtex \"L proline transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROtex \"L proline transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PRPPS \"phosphoribosylpyrophosphate synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PRPPS \"phosphoribosylpyrophosphate synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSCLYStex \"psicoselysine transporter via diffusion extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSCLYStex \"psicoselysine transporter via diffusion extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSCVT \"3 phosphoshikimate 1 carboxyvinyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSCVT \"3 phosphoshikimate 1 carboxyvinyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD120 \"Phosphatidylserine decarboxylase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD120 \"Phosphatidylserine decarboxylase n C120 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD140 \"Phosphatidylserine decarboxylase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD140 \"Phosphatidylserine decarboxylase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD141 \"Phosphatidylserine decarboxylase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD141 \"Phosphatidylserine decarboxylase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD160 \"Phosphatidylserine decarboxylase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD160 \"Phosphatidylserine decarboxylase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD161 \"Phosphatidylserine decarboxylase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD161 \"Phosphatidylserine decarboxylase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD180 \"Phosphatidylserine decarboxylase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD180 \"Phosphatidylserine decarboxylase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSD181 \"Phosphatidylserine decarboxylase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSD181 \"Phosphatidylserine decarboxylase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSERT \"phosphoserine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSERT \"phosphoserine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSERtex \"phospho L serine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSERtex \"phospho L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSP_L \"phosphoserine phosphatase L serine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSP_L \"phosphoserine phosphatase L serine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSP_Lpp \"phospho L serine phosphatase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSP_Lpp \"phospho L serine phosphatase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA120 \"Phosphatidylserine syntase n C120 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA120 \"Phosphatidylserine syntase n C120 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA140 \"Phosphatidylserine syntase n C140 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA140 \"Phosphatidylserine syntase n C140 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA141 \"Phosphatidylserine syntase n C141 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA141 \"Phosphatidylserine syntase n C141 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA160 \"Phosphatidylserine syntase n C160 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA160 \"Phosphatidylserine syntase n C160 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA161 \"Phosphatidylserine syntase n C161 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA161 \"Phosphatidylserine syntase n C161 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA180 \"Phosphatidylserine syntase n C180 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA180 \"Phosphatidylserine syntase n C180 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSSA181 \"Phosphatidylserine syntase n C181 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSSA181 \"Phosphatidylserine syntase n C181 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTA2 \"Phosphate acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTA2 \"Phosphate acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTAr \"phosphotransacetylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTAr \"phosphotransacetylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTHRpp \"phospho L threonine phosphatase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTHRpp \"phospho L threonine phosphatase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTPATi \"pantetheine phosphate adenylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTPATi \"pantetheine phosphate adenylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTRCORNt7pp \"putrescineornithine antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTRCORNt7pp \"putrescineornithine antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTRCTA \"Putrescine Transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTRCTA \"Putrescine Transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTRCabcpp \"putrescine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTRCabcpp \"putrescine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTRCt2pp \"putrescine transport in via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTRCt2pp \"putrescine transport in via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PTRCtex \"putrescine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PTRCtex \"putrescine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP1 \"purine nucleoside phosphorylase Adenosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP1 \"purine nucleoside phosphorylase Adenosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP2 \"purine nucleoside phosphorylase Deoxyadenosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP2 \"purine nucleoside phosphorylase Deoxyadenosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP3 \"purine nucleoside phosphorylase Guanosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP3 \"purine nucleoside phosphorylase Guanosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP4 \"purine nucleoside phosphorylase Deoxyguanosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP4 \"purine nucleoside phosphorylase Deoxyguanosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP5 \"purine nucleoside phosphorylase Inosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP5 \"purine nucleoside phosphorylase Inosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP6 \"purine nucleoside phosphorylase Deoxyinosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP6 \"purine nucleoside phosphorylase Deoxyinosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PUNP7 \"purine nucleoside phosphorylase Xanthosine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PUNP7 \"purine nucleoside phosphorylase Xanthosine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYAM5PO \"pyridoxamine 5 phosphate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYAM5PO \"pyridoxamine 5 phosphate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDAMK \"pyridoxamine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYDAMK \"pyridoxamine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXK \"pyridoxal kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYDXK \"pyridoxal kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXNK \"pyridoxine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYDXNK \"pyridoxine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXPP \"Pyridoxal 5 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYK \"pyruvate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYK \"pyruvate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYNP2r \"pyrimidine nucleoside phosphorylase uracil \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYNP2r \"pyrimidine nucleoside phosphorylase uracil \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYRt2rpp \"pyruvate reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYRtex \"pyruvate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PYRtex \"pyruvate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_QMO2 \"quinol monooxygenase Ubiquinol 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_QMO2 \"quinol monooxygenase Ubiquinol 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_QMO3 \"quinol monooxygenase menaquinol 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_QMO3 \"quinol monooxygenase menaquinol 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_QULNS \"quinolinate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_QULNS \"quinolinate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_R5PP \"ribose 5 phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_R5PP \"ribose 5 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_R5PPpp \"ribose 5 phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_R5PPpp \"ribose 5 phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_R5Ptex \"Ribose 5 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_R5Ptex \"Ribose 5 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBFK \"riboflavin kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBFK \"riboflavin kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBFSa \"riboflavin synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBFSa \"riboflavin synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBFSb \"riboflavin synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBFSb \"riboflavin synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBK \"ribokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBK \"ribokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBK_L1 \"L ribulokinase L ribulose \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBK_L1 \"L ribulokinase L ribulose \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RBP4E \"L ribulose phosphate 4 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RBP4E \"L ribulose phosphate 4 epimerase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RHAT1 \"rhamnosyltransferase I LPS core biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RHAT1 \"rhamnosyltransferase I LPS core biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RHCCE \"S ribosylhomocysteine cleavage enzyme\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RHCCE \"S ribosylhomocysteine cleavage enzyme\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RIBabcpp \"D ribose transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RIBabcpp \"D ribose transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RIBtex \"ribose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RIBtex \"ribose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RMI \"L rhamnose isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RMI \"L rhamnose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RMK \"rhamnulokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RMK \"rhamnulokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RMNtex \"L rhamnose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RMNtex \"L rhamnose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RMNtpp \"L rhamnose transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RMNtpp \"L rhamnose transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RMPA \"Rhamnulose 1 phosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RMPA \"Rhamnulose 1 phosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR1 \"ribonucleoside diphosphate reductase ADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR1 \"ribonucleoside diphosphate reductase ADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR1b \"ribonucleoside diphosphate reductase ADP  glutaredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR1b \"ribonucleoside diphosphate reductase ADP  glutaredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR2 \"ribonucleoside diphosphate reductase GDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR2 \"ribonucleoside diphosphate reductase GDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR2b \"ribonucleoside diphosphate reductase GDP  glutaredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR2b \"ribonucleoside diphosphate reductase GDP  glutaredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR3 \"ribonucleoside diphosphate reductase CDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR3 \"ribonucleoside diphosphate reductase CDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR3b \"ribonucleoside diphosphate reductase CDP  glutaredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR3b \"ribonucleoside diphosphate reductase CDP  glutaredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR4 \"ribonucleoside diphosphate reductase UDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR4 \"ribonucleoside diphosphate reductase UDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNDR4b \"ribonucleoside diphosphate reductase UDP  glutaredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNDR4b \"ribonucleoside diphosphate reductase UDP  glutaredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNTR1c \"ribonucleoside triphosphate reductase ATP  flavodoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNTR1c \"ribonucleoside triphosphate reductase ATP  flavodoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNTR2c \"ribonucleoside triphosphate reductase GTP  flavodoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNTR2c \"ribonucleoside triphosphate reductase GTP  flavodoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNTR3c \"ribonucleoside triphosphate reductase CTP  flavodoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNTR3c \"ribonucleoside triphosphate reductase CTP  flavodoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNTR4c \"ribonucleoside triphosphate reductase UTP  flavodoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNTR4c \"ribonucleoside triphosphate reductase UTP  flavodoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RPE \"ribulose 5 phosphate 3 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RPE \"ribulose 5 phosphate 3 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RPI \"ribose 5 phosphate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RPI \"ribose 5 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_S7PI \"sedoheptulose 7 phosphate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_S7PI \"sedoheptulose 7 phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SADH \"Succinylarginine dihydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SADH \"Succinylarginine dihydrolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SADT2 \"Sulfate adenyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SADT2 \"Sulfate adenyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SBTPD \"sorbitol 6 phosphate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SBTPD \"sorbitol 6 phosphate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SBTptspp \"D sorbitol transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SBTptspp \"D sorbitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SBTtex \"D sorbitol transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SBTtex \"D sorbitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SDPDS \"succinyl diaminopimelate desuccinylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SDPDS \"succinyl diaminopimelate desuccinylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SDPTA \"succinyldiaminopimelate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SDPTA \"succinyldiaminopimelate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SELCYSS \"selenocysteine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SELCYSS \"selenocysteine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SELNPS \"Selenophosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SELNPS \"Selenophosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERASr \" L seryl adenylate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERASr \" L seryl adenylate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERAT \"serine O acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERAT \"serine O acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERD_D \"D serine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERD_D \"D serine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERTRS \"Seryl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERTRS \"Seryl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERTRS2 \"Seryl tRNA synthetase selenocystein \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERTRS2 \"Seryl tRNA synthetase selenocystein \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERt2rpp \"L serine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERt2rpp \"L serine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERt4pp \"L serine via sodium symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERt4pp \"L serine via sodium symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERtex \"L serine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERtex \"L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SFGTHi \"S Formylglutathione hydralase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SFGTHi \"S Formylglutathione hydralase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SGDS \"Succinylglutamate desuccinylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SGDS \"Succinylglutamate desuccinylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SGSAD \"Succinylglutamic semialdehyde dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SGSAD \"Succinylglutamic semialdehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHCHCS2 \"2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHCHCS2 \"2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHCHD2 \"sirohydrochlorin dehydrogenase NAD \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHCHD2 \"sirohydrochlorin dehydrogenase NAD \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHCHF \"sirohydrochlorin ferrochetalase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHCHF \"sirohydrochlorin ferrochetalase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHK3Dr \"shikimate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHK3Dr \"shikimate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHKK \"shikimate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHKK \"shikimate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SKMtex \"shikimate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SKMtex \"shikimate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SO2tex \"SO2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SO2tex \"SO2 transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SO2tpp \"SO2 transport via diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SO2tpp \"SO2 transport via diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SO3tex \"sulfite transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SO3tex \"sulfite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SO4tex \"sulfate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SO4tex \"sulfate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SOTA \"Succinylornithine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SOTA \"Succinylornithine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPMDAT1 \"Spermidine acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPMDAT1 \"Spermidine acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPMDAT2 \"Spermidine acetyltransferase N8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPMDAT2 \"Spermidine acetyltransferase N8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPMDabcpp \"spermidine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPMDabcpp \"spermidine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPMDtex \"spermidine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPMDtex \"spermidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPMS \"spermidine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPMS \"spermidine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPODM \"superoxide dismutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPODM \"superoxide dismutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SPODMpp \"superoxide dismutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SPODMpp \"superoxide dismutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SSALx \"succinate semialdehyde dehydrogenase NAD \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SSALy \"succinate semialdehyde dehydrogenase NADP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SSALy \"succinate semialdehyde dehydrogenase NADP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCBZL \"o succinylbenzoate CoA ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCBZL \"o succinylbenzoate CoA ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCBZS \"O succinylbenzoate CoA synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCBZS \"O succinylbenzoate CoA synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCCt2_2pp \"succinate transport via proton symport 2 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCCt2_2pp \"succinate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCCt3pp \"succinate transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCCtex \"succinate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCCtex \"succinate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCDi \"succinate dehydrogenase irreversible \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCDi \"succinate dehydrogenase irreversible \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCOAS \"succinyl CoA synthetase ADP forming \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCOAS \"succinyl CoA synthetase ADP forming \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCRtex \"sucrose transport transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCRtex \"sucrose transport transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SULFACtex \"sulfoaceate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SULFACtex \"sulfoaceate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SULRi \"sulfite reductase NADPH2 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SULRi \"sulfite reductase NADPH2 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SULabcpp \"sulfate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SULabcpp \"sulfate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_T2DECAI \"trans 2 decenoyl ACP isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_T2DECAI \"trans 2 decenoyl ACP isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TALA \"transaldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TALA \"transaldolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TARTRtex \"Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TARTRtex \"Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TAURtex \"taurine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TAURtex \"taurine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TCYNTtex \"Thiocyanate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TCYNTtex \"Thiocyanate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDECOAI \"tetradecenoyl coa cis trans isomerization\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDECOAI \"tetradecenoyl coa cis trans isomerization\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDP \"thiamin pyrophosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDP \"thiamin pyrophosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDPADGAT \"dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDPADGAT \"dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDPAGTA \"dTDP 4 amino 4 6 dideoxy D glucose transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDPAGTA \"dTDP 4 amino 4 6 dideoxy D glucose transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDPDRE \"dTDP 4 dehydrorhamnose 3 5 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDPDRE \"dTDP 4 dehydrorhamnose 3 5 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDPDRR \"dTDP 4 dehydrorhamnose reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDPDRR \"dTDP 4 dehydrorhamnose reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDPGDH \"dTDPglucose 4 6 dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDPGDH \"dTDPglucose 4 6 dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDSK \"Tetraacyldisaccharide 4 kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDSK \"Tetraacyldisaccharide 4 kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDSR1 \"thioldisulfide reductase DsbC \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDSR1 \"thioldisulfide reductase DsbC \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TDSR2 \"thioldisulfide reductase DsbG \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TDSR2 \"thioldisulfide reductase DsbG \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THD2pp \"NAD P transhydrogenase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THD2pp \"NAD P transhydrogenase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THDPS \"tetrahydrodipicolinate succinylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THDPS \"tetrahydrodipicolinate succinylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THIORDXi \"hydrogen peroxide reductase thioredoxin \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THIORDXi \"hydrogen peroxide reductase thioredoxin \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THMDt2pp \"thymidine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THMDt2pp \"thymidine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THMDt2rpp \"thymidine transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THMDt2rpp \"thymidine transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THMDtex \"thymidine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THMDtex \"thymidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THMabcpp \"thiamine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THMabcpp \"thiamine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THMtex \"Thiamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THMtex \"Thiamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRA2i \"L allo Threonine Aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRA2i \"L allo Threonine Aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRAi \"Threonine aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRAi \"Threonine aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRD \"L threonine dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRD \"L threonine dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRD_L \"L threonine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRD_L \"L threonine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRPtex \"phospho L threonine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRPtex \"phospho L threonine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRS \"threonine synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRS \"threonine synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRTRS \"Threonyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRTRS \"Threonyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRabcpp \"L threonine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRabcpp \"L threonine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRt2pp \"L threonine efflux transport via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRt2pp \"L threonine efflux transport via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRt2rpp \"L threonine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRt2rpp \"L threonine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRt4pp \"L threonine via sodium symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRt4pp \"L threonine via sodium symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRtex \"L threonine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRtex \"L threonine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THYMt3pp \"thymine transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THYMtex \"thymine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THYMtex \"thymine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TKT1 \"transketolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TKT1 \"transketolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TKT2 \"transketolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TKT2 \"transketolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMAOR1pp \"Trimethylamine N oxide reductase menaquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMAOR1pp \"Trimethylamine N oxide reductase menaquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMAOR2pp \"Trimethylamine N oxide reductase demethylmenaquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMAOR2pp \"Trimethylamine N oxide reductase demethylmenaquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMAOtex \"Trimethylamine N oxide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMAOtex \"Trimethylamine N oxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMAtex \"Trimethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMAtex \"Trimethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMDK1 \"thymidine kinase ATPthymidine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMDK1 \"thymidine kinase ATPthymidine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMDPP \"thymidine phosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMDPP \"thymidine phosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMDS \"thymidylate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMDS \"thymidylate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMK \"thiamine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMK \"thiamine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMPK \"thiamine phosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMPK \"thiamine phosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TMPPP \"thiamine phosphate diphosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TMPPP \"thiamine phosphate diphosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TPI \"triose phosphate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TPI \"triose phosphate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TPRDCOAS \"triphosphoribosyl dephospho CoA synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TPRDCOAS \"triphosphoribosyl dephospho CoA synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRDR \"thioredoxin reductase NADPH \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRDR \"thioredoxin reductase NADPH \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRE6PH \"trehalose 6 phosphate hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRE6PH \"trehalose 6 phosphate hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRE6PP \"trehalose phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRE6PP \"trehalose phosphatase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRE6PS \"alpha alpha trehalose phosphate synthase UDP forming \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRE6PS \"alpha alpha trehalose phosphate synthase UDP forming \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TREH \"alpha alpha trehalase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TREH \"alpha alpha trehalase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TREHpp \"alpha alpha trehalase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TREHpp \"alpha alpha trehalase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TREptspp \"trehalose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TREptspp \"trehalose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TREtex \"trehalose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TREtex \"trehalose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPS1 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPS1 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPS2 \"tryptophan synthase indole \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPS2 \"tryptophan synthase indole \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPS3 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPS3 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPTRS \"Tryptophanyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPTRS \"Tryptophanyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPt2rpp \"L tryptophan reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPt2rpp \"L tryptophan reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRPtex \"L tryptophan transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRPtex \"L tryptophan transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TRSARr \"tartronate semialdehyde reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TRSARr \"tartronate semialdehyde reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TSULabcpp \"thiosulfate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TSULabcpp \"thiosulfate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TSULtex \"thiosulfate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TSULtex \"thiosulfate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTDCAtexi \"Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TTDCAtexi \"Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTDCEAtexi \"Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TTDCEAtexi \"Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TUNGSabcpp \"tungstate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TUNGSabcpp \"tungstate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TUNGStex \"tungstate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TUNGStex \"tungstate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYMtex \"tyramine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYMtex \"tyramine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRPpp \"phospho L tyrosine phosphatase periplasmic \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRPpp \"phospho L tyrosine phosphatase periplasmic \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRPtex \"phopho L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRPtex \"phopho L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRTA \"tyrosine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRTA \"tyrosine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRTRS \"tyrosyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRTRS \"tyrosyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRt2rpp \"L tyrosine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRt2rpp \"L tyrosine reversible transport via proton symport periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TYRtex \"L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TYRtex \"L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_U23GAAT \"UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_U23GAAT \"UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAAGDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAAGDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UACGALPpp \"UDP N acetyl D galactosamine pyrophosphohydrolase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UACGALPpp \"UDP N acetyl D galactosamine pyrophosphohydrolase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UACGAMPpp \"UDP N acetyl D glucosamine pyrophosphohydrolase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UACGAMPpp \"UDP N acetyl D glucosamine pyrophosphohydrolase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UACGAMtex \"UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UACGAMtex \"UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UACMAMO \"UDP N acetyl D mannosamine oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UACMAMO \"UDP N acetyl D mannosamine oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAG2E \"UDP N acetylglucosamine 2 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAG2E \"UDP N acetylglucosamine 2 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAGAAT \"UDP N acetylglucosamine acyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAGAAT \"UDP N acetylglucosamine acyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAGCVT \"UDP N acetylglucosamine 1 carboxyvinyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAGCVT \"UDP N acetylglucosamine 1 carboxyvinyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAGDP \"UDP N acetylglucosamine diphosphorylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAGDP \"UDP N acetylglucosamine diphosphorylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAGPT3 \"UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAGPT3 \"UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAMAGS \"UDP N acetylmuramoyl L alanyl D glutamate synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAMAGS \"UDP N acetylmuramoyl L alanyl D glutamate synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAMAS \"UDP N acetylmuramoyl L alanine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAMAS \"UDP N acetylmuramoyl L alanine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UAPGR \"UDP N acetylenolpyruvoylglucosamine reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UAPGR \"UDP N acetylenolpyruvoylglucosamine reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPDP \"undecaprenyl diphosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPDP \"undecaprenyl diphosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPDPS \"Undecaprenyl diphosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPDPS \"Undecaprenyl diphosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPDPpp \"undecaprenyl diphosphatase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPDPpp \"undecaprenyl diphosphatase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPPtppi \"undecaprenyl phosphate transport cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPACGALtex \"UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPACGALtex \"UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPG4E \"UDPglucose 4 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPG4E \"UDPglucose 4 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGALPpp \"UDPgalactose pyrophosphohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGALPpp \"UDPgalactose pyrophosphohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGALtex \"UDPgalactose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGALtex \"UDPgalactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGD \"UDPglucose 6 dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGD \"UDPglucose 6 dehydrogenase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGDC \"UDP glucuronate C 4  decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGDC \"UDP glucuronate C 4  decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGLCURtex \"UDP D glucuronate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGLCURtex \"UDP D glucuronate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGPpp \"UDPglucose pyrophosphohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGPpp \"UDPglucose pyrophosphohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGtex \"UDPglucose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGtex \"UDPglucose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPKAAT \"UDP 4  ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPKAAT \"UDP 4  ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UGLCURPpp \"UDP D glucuronate pyrophosphohydrolase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UGLCURPpp \"UDP D glucuronate pyrophosphohydrolase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UGLT \"UDPglucose hexose 1 phosphate uridylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UGLT \"UDPglucose hexose 1 phosphate uridylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UGLYCH \"Ureidoglycolate hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UGLYCH \"Ureidoglycolate hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UGMDDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UGMDDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UHGADA \"UDP 3 O acetylglucosamine deacetylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UHGADA \"UDP 3 O acetylglucosamine deacetylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ULA4NFT \"UDP L Ara4N formyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ULA4NFT \"UDP L Ara4N formyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ULA4Ntppi \"transport cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UM3PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UM3PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UM4PCP \"UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UM4PCP \"UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UM4PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UM4PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UMPK \"UMP kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UMPK \"UMP kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UMPtex \"UMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UMPtex \"UMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UNK3 \"2 keto 4 methylthiobutyrate transamination\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UNK3 \"2 keto 4 methylthiobutyrate transamination\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPLA4FNF \"undecaprenyl phosphate L Ara4FN formylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPLA4FNT \"undecaprenyl phosphate L Ara4FN transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPLA4FNT \"undecaprenyl phosphate L Ara4FN transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPP3MT \"uroporphyrinogen methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPP3MT \"uroporphyrinogen methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPP3S \"uroporphyrinogen III synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPP3S \"uroporphyrinogen III synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPPRT \"uracil phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPPRT \"uracil phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URAt2pp \"uracil transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URAt2pp \"uracil transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URAtex \"uracil transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URAtex \"uracil transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URDGLYCD \"ureidoglycolate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URDGLYCD \"ureidoglycolate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UREAtex \"Urea transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UREAtex \"Urea transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UREAtpp \"Urea transport via facilitate diffusion periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UREAtpp \"Urea transport via facilitate diffusion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIC \"uricase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIDK2r \"uridylate kinase dUMP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URIDK2r \"uridylate kinase dUMP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIH \"Uridine hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URIH \"Uridine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIK2 \"uridine kinase GTPUridine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URIK2 \"uridine kinase GTPUridine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIt2pp \"uridine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URIt2pp \"uridine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URIt2rpp \"uridine transport in via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URIt2rpp \"uridine transport in via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_URItex \"uridine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_URItex \"uridine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_USHD \"UDP sugar hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_USHD \"UDP sugar hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VALTA \"valine transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VALTA \"valine transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VALTRS \"Valyl tRNA synthetase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VALTRS \"Valyl tRNA synthetase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VALabcpp \"L valine transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VALabcpp \"L valine transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VALt2rpp \"L valine reversible transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VALt2rpp \"L valine reversible transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VALtex \"L valine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VALtex \"L valine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_VPAMT \"Valine pyruvate aminotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_VPAMT \"Valine pyruvate aminotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_X5PL3E \"L xylulose 5 phosphate 3 epimerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_X5PL3E \"L xylulose 5 phosphate 3 epimerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XANt2pp \"xanthine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XANt2pp \"xanthine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XANtex \"xanthine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XANtex \"xanthine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XANtpp \"xanthine reversible transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XMPtex \"XMP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XMPtex \"XMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XPPT \"xanthine phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XPPT \"xanthine phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XTSNH \"Xanthosine hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XTSNH \"Xanthosine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XTSNt2rpp \"Xanthosine transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XTSNt2rpp \"Xanthosine transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XTSNtex \"xanthosine transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XTSNtex \"xanthosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLI1 \"xylose isomerase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLI1 \"xylose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLI2 \"xylose isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLI2 \"xylose isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLK \"xylulokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLK \"xylulokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLK2 \"L xylulokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLK2 \"L xylulokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLUt2pp \"L xylulose transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLUt2pp \"L xylulose transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLUtex \"L xylulose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLUtex \"L xylulose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLtex \"D xylose transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLtex \"D xylose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_XYLt2pp \"D xylose transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_XYLt2pp \"D xylose transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ZN2abcpp \"Zinc Zn2 ABC transporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ZN2abcpp \"Zinc Zn2 ABC transporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ZN2t3pp \"zinc Zn2 transport out via proton antiport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ZN2t3pp \"zinc Zn2 transport out via proton antiport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ZN2tpp \"zinc transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ZN2tpp \"zinc transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ZNabcpp \"zinc Zn2 transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ZNabcpp \"zinc Zn2 transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Zn2tex \"zinc Zn2 transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Zn2tex \"zinc Zn2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GCALDD \"Glycolaldehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THZPSN \"thiazole phosphate synthesis\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THZPSN \"thiazole phosphate synthesis\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_AEP_e \"AEP exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AEPtex \"AEP transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AEPtex \"AEP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AEPabcpp \"AEP transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AEPabcpp \"AEP transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AEPPYRTA \"2 aminoethylphosphonate pyruvate transaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AEPPYRTA \"2 aminoethylphosphonate pyruvate transaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PALDH \"phosphonoacetaldehyde hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PALDH \"phosphonoacetaldehyde hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_4hoxpac_e \"4 hydroxyphenylacetate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4hoxpactex \"4 hydroxyphenylacetate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4hoxpactex \"4 hydroxyphenylacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HOXPACt2pp \"4 hydroxyphenylacetate transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HOXPACt2pp \"4 hydroxyphenylacetate transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FLAVNADR \"Flavin NAD P H reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FLAVNADR \"Flavin NAD P H reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HOXPACMON \"4 hydroxyphenylacetate 3 monooxygenase nadh\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HOXPACMON \"4 hydroxyphenylacetate 3 monooxygenase nadh\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HOXPACMOF \"4 hydroxyphenylacetate 3 monooxygenase FADH2\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HOXPACMOF \"4 hydroxyphenylacetate 3 monooxygenase FADH2\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_34DHPACDO \"3 4 dihydroxyphenylacetate 2 3 dioxygenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_34DHPACDO \"3 4 dihydroxyphenylacetate 2 3 dioxygenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4C2HM6SADH \"4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4C2HM6SADH \"4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5CM2HMUDI \"5 carboxymethyl 2 hydroxymuconate delta isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5CM2HMUDI \"5 carboxymethyl 2 hydroxymuconate delta isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_5C2O3EDDC \"5 carboxy 2 oxohept 3 enedioate decarboxylation\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_5C2O3EDDC \"5 carboxy 2 oxohept 3 enedioate decarboxylation\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2HH24DDH \"2hh24dd hydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2HH24DDH \"2hh24dd hydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4H2KPILY \"4h2kpi Lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4H2KPILY \"4h2kpi Lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDS2tpp \" S Propane 1 2 diol facilitated transport 2 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDS2tpp \" S Propane 1 2 diol facilitated transport 2 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDRDH \" R Propane 1 2 diol dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDRDH \" R Propane 1 2 diol dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12PPDSDH \" S Propane 1 2 diol dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_12PPDSDH \" S Propane 1 2 diol dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALCDPPAL \"alcohol dehydrogenase Propanal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALCDPPAL \"alcohol dehydrogenase Propanal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COAPPALDH \"CoA dependent Propanal dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COAPPALDH \"CoA dependent Propanal dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DSCLCOCH \"Sirohydrochlorin cobaltochelatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DSCLCOCH \"Sirohydrochlorin cobaltochelatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Cobalt2abcppI \"cobalt II transport via ABC system periplasm I\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Cobalt2abcppI \"cobalt II transport via ABC system periplasm I\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_Cobalt2abcppII \"cobalt II transport via ABC system periplasm II\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_Cobalt2abcppII \"cobalt II transport via ABC system periplasm II\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL2MT \"Cobalt precorrin 2 methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL2MT \"Cobalt precorrin 2 methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL3MT \"Cobalt precorrin 3 C17 methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL3MT \"Cobalt precorrin 3 C17 methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL4MT \"Cobalt precorrin 4 methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL4MT \"Cobalt precorrin 4 methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL5DA \"Cobalt precorrin 5a deacetylation\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL5DA \"Cobalt precorrin 5a deacetylation\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL5BMT \"Cobalt precorrin 5b methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL5BMT \"Cobalt precorrin 5b methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL6ARED \"Cobalt precorrin 6a reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL6ARED \"Cobalt precorrin 6a reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL6BMT \"Cobalt precorrin 6b methyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL6BMT \"Cobalt precorrin 6b methyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL7MTDC \"Cobalt precorrin 7 methyltransferase decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL7MTDC \"Cobalt precorrin 7 methyltransferase decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CODSCL8XI \"Cobalt precorrin 8x isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CODSCL8XI \"Cobalt precorrin 8x isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COBNAD \"Cobyrinate amidation\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COBNAD \"Cobyrinate amidation\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COB2NDARED \"cob II yrinate a c diamide reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COB2NDARED \"cob II yrinate a c diamide reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COB1NDAAT1 \"cob I yrinate a c diamide adenosyltransferase 1\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COB1NDAAT1 \"cob I yrinate a c diamide adenosyltransferase 1\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_COB1NDAAT2 \"cob I yrinate a c diamide adenosyltransferase 2\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_COB1NDAAT2 \"cob I yrinate a c diamide adenosyltransferase 2\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADCOBNSYN \"adenosylcobyric acid synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADCOBNSYN \"adenosylcobyric acid synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LTHRK \"L threonine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LTHRK \"L threonine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_THRPDC \"L threonine phosphate decarboxylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_THRPDC \"L threonine phosphate decarboxylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBIPS \"Adenosyl cobinamide phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBIPS \"Adenosyl cobinamide phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBLPS \"Adenosylcobalamin phosphate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBLPS \"Adenosylcobalamin phosphate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBLPP \"Adenosylcobalamin phosphate phosphatase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBLPP \"Adenosylcobalamin phosphate phosphatase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ADOCBIK \"Adenosyl cobinamide kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ADOCBIK \"Adenosyl cobinamide kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBLAT \"cob I alamin adenosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBLAT \"cob I alamin adenosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_APPK \"1 amino 2 propanol kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_remnant1_e \"residual atoms of reaction DMBZIDSYN exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_REMNANT1tex \"residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_REMNANT1tex \"residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_colipa20Oag_e \"O antigen x20 core oligosaccharide lipid A exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_colipa20Oagtex \"O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_udcdp20OagLpp \"O antigen x20 ligase periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_udcdp20OagLpp \"O antigen x20 ligase periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_udcdpgalrmnmanabetpp \"Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_udcdpgalrmnmanabetpp \"Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OGLT \"galactosyltransferase LPS O antigen biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OGLT \"galactosyltransferase LPS O antigen biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ORLT \"rhamnosyl transferase LPS O antigen biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ORLT \"rhamnosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OMLT \"mannosyl transferase LPS O antigen biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OMLT \"mannosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OALT \"abequosyl transferase LPS O antigen biosynthesis \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OALT \"abequosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MAN1PT2 \"mannose 1 phosphate guanylyltransferase GDP \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MAN1PT2 \"mannose 1 phosphate guanylyltransferase GDP \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PMANM \"phosphomannomutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PMANM \"phosphomannomutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP1pp \"O antigen polymerase 1 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP1pp \"O antigen polymerase 1 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP2pp \"O antigen polymerase 2 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP2pp \"O antigen polymerase 2 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP3pp \"O antigen polymerase 3 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP3pp \"O antigen polymerase 3 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP4pp \"O antigen polymerase 4 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP4pp \"O antigen polymerase 4 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP5pp \"O antigen polymerase 5 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP5pp \"O antigen polymerase 5 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP6pp \"O antigen polymerase 6 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP6pp \"O antigen polymerase 6 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP7pp \"O antigen polymerase 7 periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP7pp \"O antigen polymerase 7 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP8pp \"O antigen polymerase 8 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP8pp \"O antigen polymerase 8 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP9pp \"O antigen polymerase 9 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP9pp \"O antigen polymerase 9 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP10pp \"O antigen polymerase 10 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP10pp \"O antigen polymerase 10 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP11pp \"O antigen polymerase 11 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP11pp \"O antigen polymerase 11 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP12pp \"O antigen polymerase 12 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP12pp \"O antigen polymerase 12 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP13pp \"O antigen polymerase 13 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP13pp \"O antigen polymerase 13 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP14pp \"O antigen polymerase 14 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP14pp \"O antigen polymerase 14 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP15pp \"O antigen polymerase 15 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP15pp \"O antigen polymerase 15 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP16pp \"O antigen polymerase 16 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP16pp \"O antigen polymerase 16 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP17pp \"O antigen polymerase 17 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP17pp \"O antigen polymerase 17 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP18pp \"O antigen polymerase 18 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP18pp \"O antigen polymerase 18 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAP19pp \"O antigen polymerase 19 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAP19pp \"O antigen polymerase 19 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_G1PCT \"glucose 1 phosphate cytidylyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_G1PCT \"glucose 1 phosphate cytidylyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDPGLC46DH \"CDP glucose 4 6 dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDPGLC46DH \"CDP glucose 4 6 dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDP4D6DGLCRx \"CDP 4 dehydro 6 deoxyglucose reductase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDP4D6DGLCRx \"CDP 4 dehydro 6 deoxyglucose reductase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CDPABEQS \"CDP abequose synthase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CDPABEQS \"CDP abequose synthase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FEexs \"Salmochelin S4 Fe III binding spontaneous \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FEexs \"Salmochelin S4 Fe III binding spontaneous \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_SALCHS4_e \"Salmochelin S4 exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_SALCHS4FE_e \"Salmochelin S4 Fe III exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FEabcpp \"Salmochelin S4 Fe III transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FEabcpp \"Salmochelin S4 Fe III transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4tex \"Salmochelin S4 transport secretion periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4abcpp \"Salmochelin S4 transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4abcpp \"Salmochelin S4 transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTER2tpp \"enterochelin transport2 via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTER2tpp \"enterochelin transport2 via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_SALCHSX_e \"Salmochelin SX exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHSXtex \"Salmochelin SX via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHSXtex \"Salmochelin SX via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHSXtpp \"Salmochelin SX facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CSNt2pp \"cytosine transport in via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CSNt2pp \"cytosine transport in via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CSND \"Cytosine deaminase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CSND \"Cytosine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALCD19 \"alcohol dehydrogenase glycerol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALCD19 \"alcohol dehydrogenase glycerol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALCD2x \"alcohol dehydrogenase ethanol \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALCD2x \"alcohol dehydrogenase ethanol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FALDH2 \"formaldehyde dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FALDH2 \"formaldehyde dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DPR \"2 dehydropantoate 2 reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DPR \"2 dehydropantoate 2 reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LIPAHT2ex \"core oligosaccharide lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LIPAHT2ex \"core oligosaccharide lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LIPAHTex \"Lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LIPAHTex \"Lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTBD2pp \"cytochrome oxidase bd menaquinol 8 2 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTBD2pp \"cytochrome oxidase bd menaquinol 8 2 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYTBDpp \"cytochrome oxidase bd ubiquinol 8 2 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CYTBDpp \"cytochrome oxidase bd ubiquinol 8 2 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACANTHAT \"acetyl CoAanthranilate acetyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACANTHAT \"acetyl CoAanthranilate acetyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLTPD \"Galactitol 1 phosphate dehydrogenase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLTPD \"Galactitol 1 phosphate dehydrogenase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TGBPA \"Tagatose bisphosphate aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TGBPA \"Tagatose bisphosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUI1 \"glucuronate isomerase D glucuronate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GUI1 \"glucuronate isomerase D glucuronate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GUI2 \"glucuronate isomerase D galacturonate \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GUI2 \"glucuronate isomerase D galacturonate \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MNNH \"D mannonate hydrolyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MNNH \"D mannonate hydrolyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MANAO \"Mannonate oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MANAO \"Mannonate oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAADCS \"oxaloacetate decarboxylase sodium pump\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAADCS \"oxaloacetate decarboxylase sodium pump\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITt4pp \"Citrate transport via sodium symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITt4pp \"Citrate transport via sodium symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDGLCNt2rpp \"2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDGLCNt2rpp \"2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITt2pp \"Citrate proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITt2pp \"Citrate proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CITtupp \"Citrate transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CITtupp \"Citrate transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ICITtupp \"Isocitrate transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ICITtupp \"Isocitrate transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ACONCtupp \"Cisaconitate transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ACONCtupp \"Cisaconitate transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NI2uabcpp \"nickel transport via ABC system uptake periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NI2uabcpp \"nickel transport via ABC system uptake periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALTptspp \"Galactitol transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALTptspp \"Galactitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tag__D_e \"D Tagatose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TAGtex \"D Tagatose transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TAGtex \"D Tagatose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TAGptspp \"D Tagatose transport via PEPPyr PTS periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TAGptspp \"D Tagatose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TAG1PK \"D Tagatose 1 phosphate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TAG1PK \"D Tagatose 1 phosphate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE2abcpp \"iron II transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE2abcpp \"iron II transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MN2abcpp \"Manganese Mn2 transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MN2abcpp \"Manganese Mn2 transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TETDHpp1 \"Tetrathionate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TETDHpp1 \"Tetrathionate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TSULDHpp1 \"Thiosulfate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TSULDHpp1 \"Thiosulfate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TETDHpp2 \"Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TETDHpp2 \"Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TSULDHpp2 \"Thiosulfate Dehydrogenase Demethylmenaquinol 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TSULDHpp2 \"Thiosulfate Dehydrogenase Demethylmenaquinol 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TETDHpp3 \"Tetrathionate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TETDHpp3 \"Tetrathionate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TSULDHpp3 \"Thiosulfate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TSULDHpp3 \"Thiosulfate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SO3R \"Sulfite reductase \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SO3R \"Sulfite reductase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MG2uabcpp \"Magnesium Mg2 ABC transporter ubtake periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MG2uabcpp \"Magnesium Mg2 ABC transporter ubtake periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPPDC1 \"uroporphyrinogen decarboxylase uroporphyrinogen III \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPPDC1 \"uroporphyrinogen decarboxylase uroporphyrinogen III \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AIRSK \"Aminoimidazole riboside kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AIRSK \"Aminoimidazole riboside kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_airs_e \"Aminoimidazole riboside exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AIRStex \"Aminoimidazole riboside transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AIRStex \"Aminoimidazole riboside transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AIRStpp \"Aminoimidazole riboside facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_REMNANT1tpp \"residual atoms of reaction DMBZIDSYN facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ARGDA \"Arginine deiminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ARGDA \"Arginine deiminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCBT \"ornithine carbamoyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCBT \"ornithine carbamoyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CBMKr \"Carbamate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CBMKr \"Carbamate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3PGt6pp \"3 Phospho D glycerate phosphate antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3PGt6pp \"3 Phospho D glycerate phosphate antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2PGt6pp \"D Glycerate 2 phosphate phosphate antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2PGt6pp \"D Glycerate 2 phosphate phosphate antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PEPt6pp \"Phosphoenolpyruvate phosphate antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PEPt6pp \"Phosphoenolpyruvate phosphate antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_pep_e \"Phosphoenolpyruvate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PEPtex \"Phosphoenolpyruvate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PEPtex \"Phosphoenolpyruvate transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_2pg_e \"D Glycerate 2 phosphate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2PGtex \"D Glycerate 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2PGtex \"D Glycerate 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_3pg_e \"3 Phospho D glycerate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_3PGtex \"3 Phospho D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_3PGtex \"3 Phospho D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SERD_L \"L serine deaminase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SERD_L \"L serine deaminase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TARTD \"L  tartrate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TARTD \"L  tartrate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TARTRtpp \"Tartrate facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NI2tpp \"nickel 2 transport in via permease no H \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NI2tpp \"nickel 2 transport in via permease no H \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CAT \"catalase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CAT \"catalase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHORM \"chorismate mutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHORM \"chorismate mutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DAPAL \"2 3 diaminopropionate amonnia lyase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DAPAL \"2 3 diaminopropionate amonnia lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDPGALM \"UDPgalactopyranose mutase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDPGALM \"UDPgalactopyranose mutase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYD1pp \"hydrogenase ubiquinone 8 2 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HYD1pp \"hydrogenase ubiquinone 8 2 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYD2pp \"Hydrogenase menaquinone8 2 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HYD2pp \"Hydrogenase menaquinone8 2 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HYD3pp \"Hydrogenase Demethylmenaquinone 8 2 protons  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HYD3pp \"Hydrogenase Demethylmenaquinone 8 2 protons  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tet_e \"Tetrathionate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TETtex \"Tetrathionate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TETtex \"Tetrathionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_foam_e \"Formamide exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FOAMtex \"Formamide transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FOAMtex \"Formamide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tartr__D_e \"D tartrate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TARTRDtex \"D Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TARTRDtex \"D Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TARTRDtpp \"D Tartrate facilitated transport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TARTRDtpp \"D Tartrate facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTD \"galactarate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTD \"galactarate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SHSL1 \"O succinylhomoserine lyase L cysteine \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SHSL1 \"O succinylhomoserine lyase L cysteine \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ASPt2_3pp \"L asparate transport via proton symport 3 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ASPt2_3pp \"L asparate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCFUMtpp \"succinatefumarate antiporter periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCFUMtpp \"succinatefumarate antiporter periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SUCCt2_3pp \"Succintate transport via proton symport 3 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SUCCt2_3pp \"Succintate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FUMt2_3pp \"Fumarate transport via proton symport 3 H  periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FUMt2_3pp \"Fumarate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MALt2_3pp \"Malate transport via proton symport 3 H  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MALt2_3pp \"Malate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALAALAD \"D alanine D alanine dipeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALAALAD \"D alanine D alanine dipeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMSOR1 \"Dimethyl sulfoxide reductase Menaquinol 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMSOR1 \"Dimethyl sulfoxide reductase Menaquinol 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMSOR2 \"Dimethyl sulfoxide reductase Demethylmenaquinol 8 \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMSOR2 \"Dimethyl sulfoxide reductase Demethylmenaquinol 8 \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NAt3pp \"sodium transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NAt3pp \"sodium transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4IZ5PPH \"4 Imidazolone 5 propanoate propionase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4IZ5PPH \"4 Imidazolone 5 propanoate propionase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NFLGLNH \"N Formimino L glutamate formiminohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NFLGLNH \"N Formimino L glutamate formiminohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_4abz_e \"4 Aminobenzoate exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ABZtex \"4 aminobenzoate extracellular to cytosol \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxB_e \"Ferrioxamine B exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxBfe_e \"Ferrioxamine B fe exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxE_e \"Ferrioxamine E exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxEfe_e \"Ferrioxamine E fe exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxG_e \"Ferrioxamine G exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_feroxGfe_e \"Ferrioxamine G fe exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBFEabcpp \"Ferrioxamine B fe transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBFEabcpp \"Ferrioxamine B fe transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEFEabcpp \"Ferrioxamine E fe transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEFEabcpp \"Ferrioxamine E fe transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGFEabcpp \"Ferrioxamine G fe transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGFEabcpp \"Ferrioxamine G fe transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGFEtonex \"Ferrioxamine G fe transport via ton system extermal \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGFEtonex \"Ferrioxamine G fe transport via ton system extermal \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBFEtex \"Ferrioxamine B fe transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBFEtex \"Ferrioxamine B fe transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEFEtex \"Ferrioxamine E fe transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEFEtex \"Ferrioxamine E fe transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGtex \"Ferrioxamine G transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGtex \"Ferrioxamine G transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEtex \"Ferrioxamine E transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEtex \"Ferrioxamine E transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBtex \"Ferrioxamine B transport via diffusion extracellular to periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBtex \"Ferrioxamine B transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBtpp \"Ferrioxamine B facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEtpp \"Ferrioxamine E facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGtpp \"Ferrioxamine G facilitated transport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_drib_e \"deoxy D Ribose exchange\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DRIBtpp \"deoxy D ribose transport via proton symport periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DRIBtpp \"deoxy D ribose transport via proton symport periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DRBK \"deoxyribokinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DRBK \"deoxyribokinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DRIBtex \"deoxyribose transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DRIBtex \"deoxyribose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SCYSSL \"S-sulfo-L-cysteine sulfite lyase \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SLCYSS \"O-acetyl-L-serine sulfhydrylase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SLCYSS \"O-acetyl-L-serine sulfhydrylase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GSHPO \"glutathione peroxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GSHPO \"glutathione peroxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HHDDI \"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HHDDI \"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INOSR \"Ketoinositol reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_INOSR \"Ketoinositol reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MMSAD3 \"methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MMSAD3 \"methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHITPH \"chitobiose-6-phosphate hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHITPH \"chitobiose-6-phosphate hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_D5KGK \"2-Deoxy-5-Keto-D-gluconate kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_D5KGK \"2-Deoxy-5-Keto-D-gluconate kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_D5KGPA \"2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHEDAA \"2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHEDAA \"2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DKDID \"D-2,3-Diketo 4-deoxy-epi-inositol dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2INSD \"2-Inosose dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2INSD \"2-Inosose dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DTARTD \"D-tartrate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DTARTD \"D-tartrate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NMNR \"nmn hydrolysis\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NMNR \"nmn hydrolysis\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNMK \"ribosylnicotinamide kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNMK \"ribosylnicotinamide kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OACT \"O-antigen Acetyl-Transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OACT \"O-antigen Acetyl-Transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPAT \"Abequosyl transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPAT \"Abequosyl transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPMT \"mannosyl transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPMT \"mannosyl transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPRT \"rhamnosyl transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPRT \"rhamnosyl transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UDCPGT \"undecaprenol-phosphate galactosephosphotransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UDCPGT \"undecaprenol-phosphate galactosephosphotransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TCBO \"Tricarballylate oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TCBO \"Tricarballylate oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYBt6ex \"betaine (glycine betaine) transport into periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GLYBt6pp \"betaine (glycine betaine) transport in/out via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GLYBt6pp \"betaine (glycine betaine) transport in/out via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHITOBex \"Chitobiose transport into periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CHITOBpts \"Chitobiose transport via PTS\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_CHITOBpts \"Chitobiose transport via PTS\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNAMtex \"Nicotinamide riboside transport into periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_RNAMtpp \"Nicotinamide riboside transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_RNAMtpp \"Nicotinamide riboside transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAO5t3ex \"O-antigen unit (O5) translocase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAO5t3pp \"O-antigen unit (O5) translocase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAO5t3pp \"O-antigen unit (O5) translocase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TCBt2pp \"tricarballylate transport in via proton symport\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TCBt2pp \"tricarballylate transport in via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TCBt2ex \"tricarballylate transport into periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTONR1pp \"Trithionate Reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TTONR1pp \"Trithionate Reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTONtex \"Trithionate transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTONR2pp \"Trithionate Reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TTONR2pp \"Trithionate Reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_LEUt4rpp \"L-leucine transport in via sodium symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_LEUt4rpp \"L-leucine transport in via sodium symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UPLA4NT \"Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_UPLA4NT \"Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PSUDS \"Pseudouridylate synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PSUDS \"Pseudouridylate synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PFOR \"Pyruvate flavodoxin oxidoreductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PFOR \"Pyruvate flavodoxin oxidoreductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_NNDMBRT \"Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_NNDMBRT \"Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_biomass_iRR1083 \"biomass equation from http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_peptido_ST \"peptido_ST formation reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_pe2_ST \"membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_pg2_ST \"membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_clpn2_ST \"membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_pa2_ST \"membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ps2_ST \"membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_12dgr2_ST \"membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAL_ST \"O-antigen ligase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAL_ST \"O-antigen ligase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OA4L_ST \"O-antigen 4 polymerase with long chain\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OA4L_ST \"O-antigen 4 polymerase with long chain\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OA5L_ST \"O-antigen 5 polymerase with long chain\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OA5L_ST \"O-antigen 5 polymerase with long chain\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OA4VL_ST \"O-antigen 4 polymerase with very long chain\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OA4VL_ST \"O-antigen 4 polymerase with very long chain\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OA5VL_ST \"O-antigen 5 polymerase with very long chain\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OA5VL_ST \"O-antigen 5 polymerase with very long chain\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAO4t3pp \"O-antigen translocase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OAO4t3pp \"O-antigen translocase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OAO4t3ex \"O-antigen translocase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXtex \"Pyridoxal transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXtpp \"Pyridoxal transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXNtex \"Pyrdoxine transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PYDXNtpp \"Pyrdoxine transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HEXt2rpp \"hexanoate transport via proton symport, reversible (periplasm)\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HTHRtex \"4-hydroxy-L-threonine transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HTHRtex \"4-hydroxy-L-threonine transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HTHRtrpp \"4-hydroxy-L-threonine transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HTHRtrpp \"4-hydroxy-L-threonine transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_4HTHRK \"4-Hydroxy-L-threonine kinase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_4HTHRK \"4-Hydroxy-L-threonine kinase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_35PDE \"3,5-cAMP Phosphodiesterase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_UROCANH \"urocanate hydratase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AADDFT \"4-alpha-L-fucosyltransferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AADDFT \"4-alpha-L-fucosyltransferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTERHpp \"enterobactin hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTERHpp \"enterobactin hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4Hpp \"salmochelin s4 hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4Hpp \"salmochelin s4 hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FEHpp \"salmochelin s4 fe3 hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FEHpp \"salmochelin s4 fe3 hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBSZ3tex \"23dhbsz secretion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBSZ3FEexs \"23dhbsz3 Fe III sequestration\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBSZ3FEexs \"23dhbsz3 Fe III sequestration\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBSZ3FEtonex \"23dhbsz3  Fe III import\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBSZ3FEtonex \"23dhbsz3  Fe III import\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBSZ3FEabcpp \"23dhbsz3 Fe III transport via ABC system periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEDHBZS3R1 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEDHBZS3R1 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEDHBZS3R2 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEDHBZS3R2 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEDHBZS3R3 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEDHBZS3R3 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2tex \"Salmochelin s2 secretion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FEexs \"Salmochelin s2 Fe III sequestration\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FEexs \"Salmochelin s2 Fe III sequestration\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FEtonex \"Salmochelin s2 Fe III import\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FEtonex \"Salmochelin s2 Fe III import\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FEabcpp \"Salmochelin s2 Fe III transport via ABC system periplasm\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FEabcpp \"Salmochelin s2 Fe III transport via ABC system periplasm\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FER1 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FER1 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FER2 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FER2 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2FER3 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2FER3 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS2H \"Salmochelin s2 hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS2H \"Salmochelin s2 hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS1H \"Salmochelin s1 hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS1H \"Salmochelin s1 hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTERH \"enterobactin hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTERH \"enterobactin hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBZS3H \"23DHBS polymer hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBZS3H \"23DHBS polymer hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBZS2H \"23DHBS polymer hydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DHBZS2H \"23DHBS polymer hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTERtex \"Enterobactin secretion\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTERtex \"Enterobactin secretion\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTERGLCT1 \"Glycosyl transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTERGLCT1 \"Glycosyl transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ENTERGLCT2 \"Glycosyl transferase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ENTERGLCT2 \"Glycosyl transferase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBFER2 \"Ferrioxamine Fe III reduction and offloading\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXBFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXBFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXEFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXEFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEROXGFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEROXGFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GULNLtex \"L-gulonate transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GULNLtex \"L-gulonate transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GULNLtpp \"L-gulonate transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GULNLR \"L-gulonate reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DXYLUDtex \"1-deoxy-d-xyluose transport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DXYLUDtex \"1-deoxy-d-xyluose transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DXYLUDtpp \"1-deoxy-d-xyluose transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_MUREINLPPTP \"L,D-transpeptidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_MUREINLPPTP \"L,D-transpeptidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_APOLPPS \"lpp signal peptidase - murein\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_APOLPPS \"lpp signal peptidase - murein\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROLPPOATPE160 \"O-acyl Transferase - murein\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROLPPOATPG160 \"O-acyl Transferase - murein\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_PROLPPGT160 \"Glyceryl Transferase - murein\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_PROLPPGT160 \"Glyceryl Transferase - murein\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DMBZIDS \"DMB synthase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DMBZIDS \"DMB synthase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_2HH24DDH1 \"2hh24dd hydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_2HH24DDH1 \"2hh24dd hydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_GALCTND \"galactonate dehydratase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_GALCTND \"galactonate dehydratase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDPGALA \"2-dehydro-3-deoxy-6-phosphogalactonate aldolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FOAMtrpp \"Formamide transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERR1 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERR1 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERR2 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERR2 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEENTERR3 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEENTERR3 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FER1 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FER1 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FER2 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FER2 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FER3 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FER3 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SALCHS4FEtonex \"Salmochelin S4 Fe III transport via ton system extracellular \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SALCHS4FEtonex \"Salmochelin S4 Fe III transport via ton system extracellular \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HISNH4L \"Histidine ammonia lyase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HISNH4L \"Histidine ammonia lyase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_AB6PGH \"Arbutin 6 phosphate glucohydrolase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_AB6PGH \"Arbutin 6 phosphate glucohydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_SARCOX \"sarcosine oxidase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_SARCOX \"sarcosine oxidase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FE3HOXabcpp \"ferric hydroxamate transport via ABC system periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FE3HOXabcpp \"ferric hydroxamate transport via ABC system periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMR1 \"ferroxamine reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMR1 \"ferroxamine reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMR2 \"ferroxamine reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMR2 \"ferroxamine reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_FEOXAMR3 \"ferroxamine reductase\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_FEOXAMR3 \"ferroxamine reductase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DHBSH \"2 3 dihydroxybenzoylserine hydrolase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALPATE160pp \"apolipoprotein N acyltransferase phosphatidylethanolamine periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALPATE160pp \"apolipoprotein N acyltransferase phosphatidylethanolamine periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_ALPATG160pp \"apolipoprotein N acyltransferase phosphatidylglycerol periplasm \">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_ALPATG160pp \"apolipoprotein N acyltransferase phosphatidylglycerol periplasm \">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_CYSLDS \"L-cysteine desulfhydrase\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_INOSTtpp \"myo-inositol transport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_HDCAt2pp \"Hexadecanoate transport via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_HDCAt2pp \"Hexadecanoate transport via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCDCAt2pp \"Octadecanoate transport via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCDCAt2pp \"Octadecanoate transport via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_OCDCEAt2pp \"Octadecenoate transport via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_OCDCEAt2pp \"Octadecenoate transport via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_TTDCAt2pp \"Tetradecanoate transport via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_TTDCAt2pp \"Tetradecanoate transport via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_DDCAt2pp \"Dodecanoate transport via proton symport\">\n",
+      "Use of GENE ASSOCIATION or GENE_ASSOCIATION in the notes element is discouraged, use fbc:gpr instead: <Reaction R_DDCAt2pp \"Dodecanoate transport via proton symport\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_biomass_iRR1083_metals \"biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_dxyl_e \"dxyl_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_salchs2fe_e \"salchs2fe_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_rnam_e \"rnam_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_colipaOA_e \"colipaOA_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udcpo4_e \"udcpo4_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tcb_e \"tcb_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_fe3dhbzs3_e \"fe3dhbzs3_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_23dhbzs3_e \"23dhbzs3_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_guln__L_e \"guln__L_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_udcpo5_e \"udcpo5_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_4hthr_e \"4hthr_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_salchs2_e \"salchs2_e Boundary Reaction\">\n",
+      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction R_EX_tton_e \"tton_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR120tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR140tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR141tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR160tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR161tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR180tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12DGR181tipp \"1 2 diacylglycerol transport via flipping periplasm to cytoplasm n C181 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDRtex \" R Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDRtpp \" R Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDStex \" S Propane 1 2 diol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDStpp \" S Propane 1 2 diol facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_14GLUCANabcpp \"1 4 alpha D glucan transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_14GLUCANtexi \"1 4 alpha D glucan transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23CAMPtex \"23cAMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23CCMPtex \"23cCMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23CGMPtex \"23cGMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23CUMPtex \"23cUMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23DAPPAt2pp \"2 3 diaminopropionate transport in via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23DAPPAtex \"2 3 diaminopropionate transport via diffusion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23PDE2pp \"2 3 cyclic nucleotide phosphodiesterase UMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23PDE4pp \"2 3 cyclic nucleotide phosphodiesterase CMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23PDE7pp \"2 3 cyclic nucleotide phosphodiesterase AMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_23PDE9pp \"2 3 cyclic nucleotide phosphodiesterase GMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_26DAHtex \"meso 2 6 Diaminoheptanedioate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA120tipp \"2 Acyl sn glycero 3 phosphatidate n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA140tipp \"2 Acyl sn glycero 3 phosphatidate n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA141tipp \"2 Acyl sn glycero 3 phosphatidate n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA160tipp \"2 Acyl sn glycero 3 phosphatidate n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA161tipp \"2 Acyl sn glycero 3 phosphatidate n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA180tipp \"2 Acyl sn glycero 3 phosphatidate n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPA181tipp \"2 Acyl sn glycero 3 phosphatidate n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE120tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE140tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE141tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE160tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE161tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C161 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE180tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPE181tipp \"2 Acyl sn glycero 3 phosphoethanolamine n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT120 \"2 acyl glycerophospho ethanolamine acyltransferase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT140 \"2 acyl glycerophospho ethanolamine acyltransferase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT141 \"2 acyl glycerophospho ethanolamine acyltransferase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT160 \"2 acyl glycerophospho ethanolamine acyltransferase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT161 \"2 acyl glycerophospho ethanolamine acyltransferase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT180 \"2 acyl glycerophospho ethanolamine acyltransferase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPEAT181 \"2 acyl glycerophospho ethanolamine acyltransferase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG120tipp \"2 Acyl sn glycero 3 phosphoglycerol n C120 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG140tipp \"2 Acyl sn glycero 3 phosphoglycerol n C140 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG141tipp \"2 Acyl sn glycero 3 phosphoglycerol n C141 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG160tipp \"2 Acyl sn glycero 3 phosphoglycerol n C160 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG161tipp \"2 Acyl sn glycero 3 phosphoglycerol n C161 transporter via facilitated diffusion periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG180tipp \"2 Acyl sn glycero 3 phosphoglycerol n C180 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPG181tipp \"2 Acyl sn glycero 3 phosphoglycerol n C181 transporter via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT120 \"2 acyl glycerophospho glycerol acyltransferase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT140 \"2 acyl glycerophospho glycerol acyltransferase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT141 \"2 acyl glycerophospho glycerol acyltransferase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT160 \"2 acyl glycerophospho glycerol acyltransferase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT161 \"2 acyl glycerophospho glycerol acyltransferase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT180 \"2 acyl glycerophospho glycerol acyltransferase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2AGPGAT181 \"2 acyl glycerophospho glycerol acyltransferase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2DGLCNRx \"2 dehydro D gluconate reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2DGLCNRy \"2 dehydro D gluconate reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2DGULRx \"2 dehydro L gulonate reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2DGULRy \"2 dehydro L gulonate reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2MAHMP \"2 Methyl 4 amino 5 hydroxymethylpyrimidine diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_34dhpactex \"dihydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3AMPtex \"3AMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3CMPtex \"3CMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3GMPtex \"3GMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD100 \"3 hydroxyacyl acyl carrier protein dehydratase n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD120 \"3 hydroxyacyl acyl carrier protein dehydratase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD121 \"3 hydroxyacyl acyl carrier protein dehydratase n C121 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD140 \"3 hydroxyacyl acyl carrier protein dehydratase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD141 \"3 hydroxyacyl acyl carrier protein dehydratase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD160 \"3 hydroxyacyl acyl carrier protein dehydratase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD161 \"3 hydroxyacyl acyl carrier protein dehydratase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD180 \"3 hydroxyacyl acyl carrier protein dehydratase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD181 \"3 hydroxyacyl acyl carrier protein dehydratase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD40 \"3 hydroxyacyl acyl carrier protein dehydratase n C40 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD60 \"3 hydroxyacyl acyl carrier protein dehydratase n C60 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3HAD80 \"3 hydroxyacyl acyl carrier protein dehydratase n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3KGK \"3 keto L gulonate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3NTD2pp \"3 nucleotidase UMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3NTD4pp \"3 nucleotidase CMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3NTD7pp \"3 nucleotidase AMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3NTD9pp \"3 nucleotidase GMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR100 \"3 oxoacyl acyl carrier protein reductase n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR120 \"3 oxoacyl acyl carrier protein reductase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR121 \"3 oxoacyl acyl carrier protein reductase n C121 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR140 \"3 oxoacyl acyl carrier protein reductase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR141 \"3 oxoacyl acyl carrier protein reductase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR160 \"3 oxoacyl acyl carrier protein reductase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR161 \"3 oxoacyl acyl carrier protein reductase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR180 \"3 oxoacyl acyl carrier protein reductase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR181 \"3 oxoacyl acyl carrier protein reductase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR40 \"3 oxoacyl acyl carrier protein reductase n C40 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR60 \"3 oxoacyl acyl carrier protein reductase n C60 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAR80 \"3 oxoacyl acyl carrier protein reductase n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS100 \"3 oxoacyl acyl carrier protein synthase n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS120 \"3 oxoacyl acyl carrier protein synthase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS121 \"3 oxoacyl acyl carrier protein synthase n C121 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS140 \"3 oxoacyl acyl carrier protein synthase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS141 \"3 oxoacyl acyl carrier protein synthase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS160 \"3 oxoacyl acyl carrier protein synthase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS161 \"3 oxoacyl acyl carrier protein synthase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS180 \"3 oxoacyl acyl carrier protein synthase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS181 \"3 oxoacyl acyl carrier protein synthase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS60 \"3 oxoacyl acyl carrier protein synthase n C60 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3OAS80 \"3 oxoacyl acyl carrier protein synthase n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3PEPTabcpp \"tripeptide LalaDgluMdap transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3PEPTtex \"LalaDgluMdap tripeptide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3UMPtex \"3UMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HOXPACDtex \"4 hydroxyphenylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4PCP \"tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4PCPpp \"tetrapeptide L D carboxypeptidase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4PEPTabcpp \"tetrapeptide LalaDgluMdapDala transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4PEPTtex \"LalaDgluMdapDala pentapeptide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5DGLCNR \"5 dehydro D gluconate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5DGLCNt2rpp \"5 Dehydro D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5DGLCNtex \"5 Dehydro D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5DOAN \"5 deoxyadenosine nuclosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_A5PISO \"arabinose 5 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS1 \"acyl acyl carrier protein synthetase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS2 \"acyl acyl carrier protein synthetase  n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS3 \"acyl acyl carrier protein synthetase  n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS4 \"acyl acyl carrier protein synthetase  n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS5 \"acyl acyl carrier protein synthetase  n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS6 \"acyl acyl carrier protein synthetase  n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS7 \"acyl acyl carrier protein synthetase  n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS8 \"acyl acyl carrier protein synthetase  n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACPS9 \"acyl acyl carrier protein synthetase  n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AACTOOR \"Aminoacetoneoxygen oxidoreductase deaminating flavin containing \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AAMYL \"alpha amylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AAMYLpp \"alpha amylase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ABTA \"4 aminobutyrate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ABUTD \"Aminobutyraldehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ABUTt2pp \"4 aminobutyrate transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ABUTtex \"4 aminobutyrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACACtex \"acetoacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACALD \"acetaldehyde dehydrogenase acetylating \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACALDtex \"acetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACALDtpp \"acetaldehyde reversible transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACBIPGT \"Adenosyl cobinamide phosphate guanyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACCOAC \"acetyl CoA carboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACCOAL \"acetate CoA ligase ADP forming \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAL1PPpp \"N acetyl D galactosamine 1 phosphatase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAL1Ptex \"N acetyl D galactosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGALtex \"N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAM1PPpp \"N acetyl D glucosamine 1 phosphatase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAM1Ptex \"N acetyl D glucosamine 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAMK \"N acetylglucosamine kinase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAMT \"UDP N acetylglucosamineundecaprenylphosphate N acetylglucosamine 1 phosphate transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAptspp \"N Acetyl D glucosamine transport via PEPPyr PTS  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGAtex \"N Acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGK \"acetylglutamate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACGS \"N acetylglutamate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACHBS \"2 aceto 2 hydroxybutanoate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACKr \"acetate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACLS \"acetolactate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACM6PH \"N acetylmuramate 6 phosphate hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACMAMUT \"UDP N acetyl D mannosaminuronic acid transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACMANAptspp \"N acetyl D mannosamine transport via PTS  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACMANAtex \"N acetyl D mannosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACMUMtex \"N acetylmuramate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACNAMt2pp \"N acetylneuraminate proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACNAMtex \"N acetylneuraminate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACNML \"N Acetylneuraminate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD1f \"acyl CoA dehydrogenase butanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD2f \"acyl CoA dehydrogenase hexanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD3f \"acyl CoA dehydrogenase octanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD4f \"acyl CoA dehydrogenase decanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD5f \"acyl CoA dehydrogenase dodecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD6f \"acyl CoA dehydrogenase tetradecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD7f \"acyl CoA dehydrogenase hexadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOAD8f \"acyl CoA dehydrogenase octadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOATA \"Acetyl CoA ACP transacylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACODA \"acetylornithine deacetylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOLIPAtex \"arabinose modified core oligosaccharide lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACONIs \"aconitate isomerase spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACONTa \"aconitase half reaction A Citrate hydro lyase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACONTb \"aconitase half reaction B Isocitrate hydro lyase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACOTA \"acetylornithine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACPS1 \"acyl carrier protein synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACS \"acetyl CoA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACSERtex \"O Acetyl L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACSERtpp \"O Acetyl L serine export via facilitated transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACt2rpp \"acetate reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACt4pp \"NaAcetate symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACtex \"Acetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADA \"Adenosine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADCL \"4 aminobenzoate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADCS \"4 amino 4 deoxychorismate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADEt2rpp \"adenine transport via proton symport reversible  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADEtex \"adenine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADK1 \"adenylate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADK3 \"adentylate kinase GTP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADK4 \"adentylate kinase ITP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADMDC \"adenosylmethionine decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNCYC \"adenylate cyclase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNK1 \"adenosine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNUC \"adenosine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNt2pp \"adenosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNt2rpp \"adenosine transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADNtex \"adenosine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBLabcpp \"Adenosylcobalamin transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBLtonex \"Adenosylcobalimin transport via ton system extermal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADPRDP \"ADPribose diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADPT \"adenine phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADSK \"adenylyl sulfate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADSL1r \"adenylsuccinate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADSL2r \"adenylosuccinate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADSS \"adenylosuccinate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGDC \"N acetylglucosamine 6 phosphate deacetylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM3PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM3PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide amidase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM3PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tripeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM3Pt2pp \"GlcNAc anhMurNAc tripeptide transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4PA \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4PApp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide amidase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4PCP \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4PCPpp \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4PH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl tetrapeptide beta 1 4 N acetylglucosaminidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGM4Pt2pp \"GlcNAc anhMurNAc tetrapeptide transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGMH \"N Acetyl D glucosamine anhydrous N Acetylmuramyl beta 1 4 N acetylglucosaminidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGMHE \"ADP D glycero D manno heptose epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGMT \"agmatinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGMt2pp \"GlcNAc anhMurNAc transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGMtex \"agmatine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT120 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT140 \"1 tetradecanoyl sn glycerol 3 phosphate O acyltransferase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT141 \"1 tetradec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT160 \"1 hexadecanoyl sn glycerol 3 phosphate O acyltransferase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT161 \"1 hexadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT180 \"1 octadecanoyl sn glycerol 3 phosphate O acyltransferase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPAT181 \"1 octadec 7 enoyl sn glycerol 3 phosphate O acyltransferase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AGPR \"N acetyl g glutamyl phosphate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AHCYSNS \"S adenosylhomocysteine nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AICART \"phosphoribosylaminoimidazolecarboxamide formyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AIRC2 \"phosphoribosylaminoimidazole carboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AIRC3 \"phosphoribosylaminoimidazole carboxylase mutase rxn \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AKGDH \"2 Oxogluterate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AKGt2rpp \"2 oxoglutarate reversible transport via symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AKGtex \"alpha ketoglutarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAALAabcpp \"D alanyl D alanine DalaDala transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAALAr \"D alanine D alanine ligase reversible \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAALAtex \"D alanyl D alanine DalaDala transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAGLUE \"L alanyl gamma glutamate epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAR \"alanine racemase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALATA_D2 \"D alanine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALATA_L \"L alanine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALATA_L2 \"alanine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALATRS \"Alanyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAabcpp \"L alanine transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAt2pp \"L alanine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAt4pp \"L alanine transport in via sodium symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAtex \"L alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALDD2y \"aldehyde dehydrogenase acetaldehyde NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALDD3y \"aldehyde dehydrogenase propanal NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALLTAMH \"allantoate amidohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALLTN \"allantoinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALLTNt2rpp \"allantoin transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALLTNtex \"allantoin transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALLtex \"Allose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALR2 \"aldose reductase methylglyoxal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALR4x \"aldose reductase acetol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AM3PA \"anhydrous N Acetylmuramyl tripeptide amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AM4PA \"anhydrous N Acetylmuramyl tetrapeptide amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AM4PCP \"anhydrous N Acetylmuramyl tetrapeptide L D carboxypeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMALT1 \"Amylomaltase maltotriose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMALT2 \"Amylomaltase maltotetraose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMALT3 \"Amylomaltase maltopentaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMALT4 \"Amylomaltase maltohexaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMANAPEr \"N acetylmannosamine 6 phosphate epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMANK \"N acetyl D mannosamine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMAOTr \"adenosylmethionine 8 amino 7 oxononanoate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMMQLT8 \"S adenosylmethione2 demthylmenaquinole methyltransferase menaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMPMS2 \"4 amino 2 methyl 5 phosphomethylpyrimidine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMPN \"AMP nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMPTASECG \"alanyl aminopeptidase cys gly \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMPTASEPG \"aminopeptidase pro gly \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AMPtex \"AMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ANHGMtex \"GlcNAc anhMurNAc transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ANHMK \"1 6 anhydrous N Acetylmuramate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ANPRT \"anthranilate phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ANS \"anthranilate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AOBUTDs \"L 2 amino 3 oxobutanoate decarboxylation spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AOXSr \"8 amino 7 oxononanoate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AP4AH \"Ap4A hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AP5AH \"Ap5A hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_APRAUR \"5 amino 6 5 phosphoribosylamino uracil reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARAI \"L arabinose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNR1 \"aerobactin reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNR2 \"aerobactin reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNR3 \"aerobactin reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNabcpp \"aerobactin transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNexs \"aerobactin Fe loading reaction spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNtex \"aerobactin secretion to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNtonex \"aerobactin transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBTNtpp \"aerobactin secretion to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBt2rpp \"L arabinose transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBt3ipp \"L arabinose transport via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARBtex \"L arabinose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGAGMt7pp \"Arginineagmatine antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGDC \"arginine decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGDCpp \"arginine decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGORNt7pp \"arginineornithine antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGSL \"argininosuccinate lyase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGSS \"argininosuccinate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGTRS \"Arginyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGabcpp \"L arginine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGt3pp \"L arginine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGtex \"L arginine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASAD \"aspartate semialdehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASCBPL \"L ascorbate 6 phosphate lactonase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASCBptspp \"L ascorbate transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASCBtex \"L ascorbate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNN \"L asparaginase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNNpp \"L asparaginase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNS1 \"asparagine synthase glutamine hydrolysing \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNS2 \"asparagine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNTRS \"Asparaginyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNabcpp \"L asparagine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNt2rpp \"L asparagine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASNtex \"L asparagine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASO3tex \"arsenite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASP1DC \"aspartate 1 decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPCT \"aspartate carbamoyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPK \"aspartate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPO3 \"L aspartate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPO4 \"L aspartate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPO5 \"L aspartate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPO6 \"L aspartate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPT \"L aspartase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPTA \"aspartate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPTRS \"Aspartyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPabcpp \"L aspartate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPt2_2pp \"Aspartate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPt2pp \"L aspartate transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPtex \"L aspartate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AST \"Arginine succinyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ATHRDHr \"L allo threonine dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ATPHs \"ATP amine hydrolysis spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ATPM \"ATP maintenance requirement\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ATPPRT \"ATP phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ATPS4rpp \"ATP synthase four protons for one ATP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BALAt2pp \"beta alanine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BALAtex \"beta alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BPNT \"3 5 bisphosphate nucleotidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BSORx \"Biotin sulfoxide reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BSORy \"Biotin sulfoxide reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BTS4 \"Biotin synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BUTSO3tex \"butanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_BUTtex \"Butyrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CA2t3pp \"calcium Ca2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CA2tex \"calcium Ca2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CADVtpp \"LysineCadaverine antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CAt6pp \"calcium sodium antiporter 11 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBIAT \"Cobinamide adenyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBItonex \"Cobinamide transport via ton system extermal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBIuabcpp \"Cobinamide transport via ABC system uptake periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBL1abcpp \"Cob 1 alamin transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBL1tonex \"Cob 1 alamin transport via ton system extermal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBPS \"carbamoyl phosphate synthase glutamine hydrolysing \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CD2abcpp \"Cadmium Cd2 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CD2t3pp \"cadmium Cd2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CD2tex \"cadmium Cd2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CD2tpp \"cadmium 2 transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA120 \"CDP Diacylglycerol pyrophostatase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA140 \"CDP Diacylglycerol pyrophostatase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA141 \"CDP Diacylglycerol pyrophostatase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA160 \"CDP Diacylglycerol pyrophostatase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA161 \"CDP Diacylglycerol pyrophostatase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA180 \"CDP Diacylglycerol pyrophostatase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDAPPA181 \"CDP Diacylglycerol pyrophostatase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDPMEK \"4 cytidine 5 diphospho 2 C methyl D erythritol kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CFAS160E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CFAS160G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CFAS180E \"cyclopropane fatty acid synthase Phosphatidylethanolamine n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CFAS180G \"cyclopropane fatty acid synthase Phosphatidylglycerol n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CGLYabcpp \"L Cysteinylglycine Cys Gly transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CGLYtex \"L Cysteinylglycine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHLabcpp \"choline transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHLtex \"choline transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHORS \"chorismate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHRPL \"Chorismate pyruvate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITL \"Citrate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITt7pp \"Citrate transport via succinate antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICITtex \"citrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACONCtex \"cisaconitat transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLIPAtex \"cold lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH120pp \"cardiolipin hydrolase periplasm n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH140pp \"cardiolipin hydrolase periplasm n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH141pp \"cardiolipin hydrolase periplasm n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH160pp \"cardiolipin hydrolase periplasm n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH161pp \"cardiolipin hydrolase periplasm n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH180pp \"cardiolipin hydrolase periplasm n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNH181pp \"cardiolipin hydrolase periplasm n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS120pp \"cardiolipin synthase periplasmic n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS140pp \"cardiolipin synthase periplasmic n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS141pp \"cardiolipin synthase periplasmic n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS160pp \"cardiolipin synthase periplasmic n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS161pp \"cardiolipin synthase periplasmic n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS180pp \"cardiolipin synthase periplasmic n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLPNS181pp \"cardiolipin synthase periplasmic n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLt3_2pp \"chloride transport out via proton antiport 21  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CLtex \"chloride Cl 1 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CMPN \"CMP nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CMPtex \"CMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CO2tex \"CO2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CO2tpp \"CO2 transporter via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COBALT2abcpp \"Cobalt Co2 ABC transporter periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COBALT2t3pp \"cobalt Co2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COBALT2tex \"cobalt Co2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COBALT2tpp \"cobalt transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COLIPAabcpp \"core oligosaccharide lipid A transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COLIPAtex \"core oligosaccharide lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNR1 \"coprogen Fe III  reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNR2 \"coprogen Fe III  reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNR3 \"coprogen Fe III  reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNUtex \"coprogen unloaded secretion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNUtpp \"coprogen unloaded secretion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNabcpp \"coprogen transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNexs \"coprogen Fe loading reaction spontaneaous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPGNtonex \"Coprogen transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPPPGO \"coproporphyrinogen oxidase O2 required \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CPPPGO2 \"Oxygen Independent coproporphyrinogen III oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNBTCT \"gamma butyrobetainyl CoA carnitine CoA transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNCAL2 \"Carnitine CoA Ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNCAR \"carnitine CoA racemase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNCBCT \"crotonobetainyl CoA carnitine CoA transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNCDH \"Carnityl CoA dehydratse\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNDCAL2 \"D Carnitine CoA Ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNDabcpp \"D carnitine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNDt2rpp \"D carnitine outward transport H antiport \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNabcpp \"L carnitine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNt2rpp \"L carnitine outward transport H antiport \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNt7pp \"Carnitinebutyrobetaine antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNt8pp \"L carnitineD carnitine antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CRNtex \"L carnitine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CS \"citrate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CSNtex \"cytosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CTBTCAL2 \"Crotonobetaine CoA Ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CTBTabcpp \"crotonobetaine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CTBTt2rpp \"cronobetaine outward transport H antiport \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CTPS2 \"CTP synthase glutamine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CU1Opp \"Cuprous Oxidase Cu1 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CU1abcpp \"Copper Cu 1 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AU1abcpp \"Gold Au 1 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CU2abcpp \"Copper Cu2 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CU2tex \"copper Cu2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CU2tpp \"copper transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CUtex \"copper Cu1 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYANST \"Cyanide sulfurtransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYANSTpp \"Cyanide sulfurtransferase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYANtex \"Cyanide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYNTtex \"Cyanate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSDS \"Cysteine Desulfhydrase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSDtex \"D cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSS \"cysteine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSSADS \"L cysteine sulfinic acid desulfurase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSTL \"cystathionine b lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSTRS \"Cysteinyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSabc2pp \"L cysteine export via ABC system cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSabcpp \"L cysteine uptake via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSIabcpp \"L cystine uptake via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYStex \"L cysteine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSItex \"L cystine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYStpp \"L cysteine export via facilitated transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTBO3_4pp \"cytochrome oxidase bo3 ubiquinol 8 4 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTD \"cytidine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTDH \"Cytidine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTDK2 \"cytidine kinase GTP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTDt2pp \"cytidine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTDt2rpp \"cytidine transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTDtex \"cytidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTK1 \"cytidylate kinase CMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTK2 \"cytidylate kinase dCMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAAD \"D Amino acid dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DADA \"Deoxyadenosine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DADK \"deoxyadenylate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DADNt2pp \"deoxyadenosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DADNtex \"deoxyadenosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK120 \"diacylglycerol kinase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK140 \"diacylglycerol kinase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK141 \"diacylglycerol kinase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK160 \"diacylglycerol kinase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK161 \"diacylglycerol kinase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK180 \"diacylglycerol kinase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAGK181 \"diacylglycerol kinase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DALAt2pp \"D alanine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DALAtex \"D Alanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAMPtex \"dAMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAPDC \"diaminopimelate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAPE \"diaminopimelate epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAPabcpp \"M diaminopimelic acid ABC transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAPtex \"1 5 Diaminopentane transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN120 \"CDP diacylglycerol synthetase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN140 \"CDP diacylglycerol synthetase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN141 \"CDP diacylglycerol synthetase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN160 \"CDP diacylglycerol synthetase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN161 \"CDP diacylglycerol synthetase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN180 \"CDP diacylglycerol synthetase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DASYN181 \"CDP diacylglycerol synthetase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DATPHs \"dATP amine hydrolysis spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DB4PS \"3 4 Dihydroxy 2 butanone 4 phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DBTS \"dethiobiotin synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCAtex \"Decanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCMPtex \"dCMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCTPD \"dCTP deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCYTD \"deoxycytidine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCYTt2pp \"deoxycytidine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DCYTtex \"deoxycytidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDCAtexi \"Fatty acid dodecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDGALK \"2 dehydro 3 deoxygalactonokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDGLCNtex \"2 dehydro 3 deoxy D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDGLK \"2 dehydro 3 deoxygluconokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDPA \"3 deoxy D arabino heptulosonate 7 phosphate synthetase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DGK1 \"deoxyguanylate kinase dGMPATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DGMPtex \"dGMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DGSNt2pp \"deoxyguanosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DGSNtex \"deoxyguanosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHAD1 \"dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHAD2 \"Dihydroxy acid dehydratase 2 3 dihydroxy 3 methylpentanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHAtex \"Dihydroxyacetone transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHAtpp \"Dihydroxyacetone transport via facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBD \"2 3 dihydro 2 3 dihydroxybenzoate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBS \"2 3 dihydroxybenzoate adenylate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHDPRy \"dihydrodipicolinate reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHDPS \"dihydrodipicolinate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHFR \"dihydrofolate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHFS \"dihydrofolate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHNAOT4 \"1 4 dihydroxy 2 naphthoate octaprenyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHNPA2 \"dihydroneopterin aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHORD2 \"dihydoorotic acid dehydrogenase quinone8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHORD5 \"dihydroorotic acid menaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHORTS \"dihydroorotase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHPPDA2 \"diaminohydroxyphosphoribosylaminopryrimidine deaminase 25drapp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHPS2 \"dihydropteroate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHPTDCs \"4 5 dihydroxy 2 3 pentanedione cyclization spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHQS \"3 dehydroquinate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHQTi \"3 dehydroquinate dehydratase irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DIMPtex \"dIMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DINSt2pp \"deoxyinosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DINStex \"deoxyinosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKGLCNR1 \"2 5 diketo D gluconate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKGLCNR2x \"2 5 diketo D gluconate reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKGLCNR2y \"2 5 diketo D gluconate reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKMPPD \"2 3 diketo 5 methylthio 1 phosphopentane degradation reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKMPPD3 \"2 3 diketo 5 methylthio 1 phosphopentane degradation reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMATT \"dimethylallyltranstransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMPPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase dmpp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMQMT \"3 Dimethylubiquinonol 3 methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMSOtex \"Dimethyl sulfoxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMStex \"Dimethyl sulfide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DM_4HBA \"Sink needed to allow 4 hydroxy benzoate to leave system\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DM_5DRIB \"Sink needed to allow 5 deoxyribose to leave system\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DM_HMFURN \"Sink needed to allow 4 hydroxy 5 methyl 3 2H furanone to leave system\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DM_OXAM \"Sink needed to allow oxamate to leave system\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DNMPPA \"Dihydroneopterin monophosphate dephosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DNTPPA \"Dihydroneopterin triphosphate pyrophosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DOGULNR \"2 3 dioxo L gulonate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DOPAtex \"dopamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DPCOAK \"dephospho CoA kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DRPA \"deoxyribose phosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSBAO1 \"DsbA protein reoxidation reaction aerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSBAO2 \"DsbA protein reoxidation reaction anaerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSBCGT \"DsbCglutathione thiotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSBDR \"DsbD reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSBGGT \"DsbGglutathione thiotransferase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSERDHr \"D serine dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSERt2pp \"D serine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSERtex \"D serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DTMPK \"dTMP kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DTMPtex \"dTMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DUMPtex \"dUMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DURIK1 \"deoxyuridine kinase ATPDeoxyuridine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DURIPP \"deoxyuridine phosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DURIt2pp \"deoxyuridine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DURItex \"deoxyuridine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DUTPDP \"dUTP diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DXPRIi \"1 deoxy D xylulose reductoisomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DXPS \"1 deoxy D xylulose 5 phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DXYLK \"1 Deoxy D xylulose kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_D_LACt2pp \"D lactate transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_D_LACtex \"D lactate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_E4PD \"Erythrose 4 phosphate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR100x \"enoyl acyl carrier protein reductase NADH  n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR100y \"enoyl acyl carrier protein reductase NADPH  n C100 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR120x \"enoyl acyl carrier protein reductase NADH  n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR120y \"enoyl acyl carrier protein reductase NADPH  n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR121x \"enoyl acyl carrier protein reductase NADH  n C121 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR121y \"enoyl acyl carrier protein reductase NADPH  n C121 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR140x \"enoyl acyl carrier protein reductase NADH  n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR140y \"enoyl acyl carrier protein reductase NADPH  n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR141x \"enoyl acyl carrier protein reductase NADH  n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR141y \"enoyl acyl carrier protein reductase NADPH  n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR160x \"enoyl acyl carrier protein reductase NADH  n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR160y \"enoyl acyl carrier protein reductase NADPH  n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR161x \"enoyl acyl carrier protein reductase NADH  n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR161y \"enoyl acyl carrier protein reductase NADPH  n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR180x \"enoyl acyl carrier protein reductase NADH  n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR180y \"enoyl acyl carrier protein reductase NADPH  n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR181x \"enoyl acyl carrier protein reductase NADH  n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR181y \"enoyl acyl carrier protein reductase NADPH  n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR40x \"enoyl acyl carrier protein reductase NADH  n C40 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR40y \"enoyl acyl carrier protein reductase NADPH  n C40 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR60x \"enoyl acyl carrier protein reductase NADH  n C60 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR60y \"enoyl acyl carrier protein reductase NADPH  n C60 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR80x \"enoyl acyl carrier protein reductase NADH  n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EAR80y \"enoyl acyl carrier protein reductase NADPH  n C80 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECA4COLIPAtex \"enterobacterial common antigen x4 core oligosaccharide lipid A transport periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECA4OALpp \"enterobacterial common antigen x4 O antigen ligase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECAP1pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECAP2pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECAP3pp \"enterobacterial common antigen polymerase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECAtpp \"enterobacterial common antigen transferase flippase cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH1 \"3 hydroxyacyl CoA dehydratase 3 hydroxybutanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH2 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH3 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctanoyl CoA \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH4 \"3 hydroxyacyl CoA dehydratase 3 hydroxydecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH5 \"3 hydroxyacyl CoA dehydratase 3 hydroxydodecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH6 \"3 hydroxyacyl CoA dehydratase 3 hydroxytetradecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH7 \"3 hydroxyacyl CoA dehydratase 3 hydroxyhexadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ECOAH8 \"3 hydroxyacyl CoA dehydratase 3 hydroxyoctadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDA \"2 dehydro 3 deoxy phosphogluconate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDD \"6 phosphogluconate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDTXS1 \"Endotoxin Synthesis lauroyl transferase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDTXS2 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDTXS3 \"Endotoxin Synthesis palmitoleoyl ACP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EDTXS4 \"Endotoxin Synthesis myristoyl transferase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENLIPAtex \"phosphoethanolamine lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENO \"enolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTCS \"enterochelin synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETHAAL \"Ethanolamine ammonia lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETHAt2pp \"ethanolamine transport in via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETHAtex \"ethanolamine transport via diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETHSO3tex \"ethanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETOHt2rpp \"ethanol reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ETOHtex \"ethanol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_chitob_e \"Chitobiose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pydxn_e \"Pyridoxine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pydx_e \"Pyridoxal exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_12ppd__R_e \" R Propane 1 2 diol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_12ppd__S_e \" S Propane 1 2 diol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_14glucan_e \"1 4 alpha D glucan exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_15dap_e \"1 5 Diaminopentane exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23camp_e \"2 3 Cyclic AMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23ccmp_e \"2 3 Cyclic CMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23cgmp_e \"2 3 Cyclic GMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23cump_e \"2 3 Cyclic UMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23dappa_e \"2 3 diaminopropionate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_26dap__M_e \"meso 2 6 Diaminoheptanedioate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_2ddglcn_e \"2 Dehydro 3 deoxy D gluconate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_34dhpac_e \"3 4 Dihydroxyphenylacetaldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3amp_e \"3 AMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3cmp_e \"3 cmp exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3gmp_e \"3 GMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3hcinnm_e \"3 hydroxycinnamic acid exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3hpppn_e \"3 3 hydroxy phenyl propionate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3ump_e \"3 UMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_4abut_e \"4 Aminobutanoate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_4hoxpacd_e \"4 Hydroxyphenylacetaldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_5dglcn_e \"5 Dehydro D gluconate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_LalaDgluMdapDala_e \"L alanine D glutamate meso 2 6 diaminoheptanedioate D alanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_LalaDgluMdap_e \"L alanine D glutamate meso 2 6 diaminoheptanedioate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ac_e \"Acetate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acac_e \"Acetoacetate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acald_e \"Acetaldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acgal1p_e \"N Acetyl D galactosamine 1 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acgal_e \"N Acetyl D galactosamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acgam1p_e \"N Acetyl D glucosamine 1 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acgam_e \"N Acetyl D glucosamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acmana_e \"N Acetyl D mannosamine exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acmum_e \"N Acetylmuramate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acnam_e \"N Acetylneuraminate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acolipa_e \"4 Amino 4 deoxy L arabinose modified core oligosaccharide lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acser_e \"O Acetyl L serine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ade_e \"Adenine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_adn_e \"Adenosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_adocbl_e \"Adenosylcobalamin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ag_e \"silver exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_agm_e \"Agmatine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_akg_e \"2 Oxoglutarate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ala__B_e \"beta Alanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ala__D_e \"D Alanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ala__L_e \"L Alanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_alaala_e \"D Alanyl D alanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_all__D_e \"D Allose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_alltn_e \"Allantoin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_amp_e \"AMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_anhgm_e \"N Acetyl D glucosamine anhydrous N Acetylmuramic acid exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_arab__L_e \"L Arabinose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_arbtn_e \"aerobactin minus Fe3 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_arbtn__fe3_e \"Aerobactin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_arg__L_e \"L Arginine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ascb__L_e \"L Ascorbate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_asn__L_e \"L Asparagine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_aso3_e \"arsenite exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_asp__L_e \"L Aspartate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_but_e \"Butyrate n C40 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_butso3_e \"butanesulfonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ca2_e \"Calcium exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cbi_e \"Cobinamide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cbl1_e \"Cob I alamin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cd2_e \"Cadmium exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cgly_e \"Cys Gly exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_chol_e \"Choline exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cit_e \"Citrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_icit_e \"Isocitrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_acon__C_e \"cisaconitate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cl_e \"Chloride exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cmp_e \"CMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_co2_e \"CO2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cobalt2_e \"Co2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_colipa_e \"core oligosaccharide lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cpgn_e \"coprogen exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cpgn__un_e \"coprogen unloaded no Fe III  exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_crn_e \"L Carnitine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_csn_e \"Cytosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cu2_e \"Cu2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cu_e \"Cu exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cyan_e \"Hydrogen cyanide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cynt_e \"Cyanate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cys__D_e \"D Cysteine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cys__L_e \"L Cysteine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cysi__L_e \"L Cystine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_cytd_e \"Cytidine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dad__2_e \"Deoxyadenosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_damp_e \"dAMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dca_e \"Decanoate n C100 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dcmp_e \"dCMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dcyt_e \"Deoxycytidine exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ddca_e \"Dodecanoate n C120 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dgmp_e \"dGMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dgsn_e \"Deoxyguanosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dha_e \"Dihydroxyacetone exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dimp_e \"dIMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_din_e \"Deoxyinosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dms_e \"Dimethyl sulfide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dmso_e \"Dimethyl sulfoxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dopa_e \"Dopamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dtmp_e \"dTMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dump_e \"dUMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_duri_e \"Deoxyuridine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_eca4colipa_e \" enterobacterial common antigen x4 core oligosaccharide lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_enlipa_e \"phosphoethanolamine KDO 2 lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_enter_e \"Enterochelin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_etha_e \"Ethanolamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ethso3_e \"ethanesulfonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_etoh_e \"Ethanol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_f6p_e \"D fructose 6 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fald_e \"Formaldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe2_e \"Fe2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3_e \"Fe3 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3dcit_e \"Fe III dicitrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3dhbzs_e \"ferric 2 3 dihydroxybenzoylserine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3hox_e \"Fe III hydroxamate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3hox__un_e \"Fe III hydoxamate unloaded exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fecrm_e \"Ferrichrome exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fecrm__un_e \"Ferrichrome minus Fe III exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feenter_e \"Fe enterobactin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feoxam_e \"ferroxamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feoxam__un_e \"ferroxamine minus Fe 3 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_for_e \"Formate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fru_e \"D Fructose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_frulys_e \"fructoselysine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fruur_e \"D Fructuronate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fuc__L_e \"L Fucose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fum_e \"Fumarate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g1p_e \"D Glucose 1 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g3pc_e \"sn Glycero 3 phosphocholine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g3pe_e \"sn Glycero 3 phosphoethanolamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g3pg_e \"Glycerophosphoglycerol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g3pi_e \"sn Glycero 3 phospho 1 inositol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g3ps_e \"Glycerophosphoserine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_g6p_e \"D Glucose 6 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gal1p_e \"alpha D Galactose 1 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gal__bD_e \"beta D Galactose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gal_e \"D Galactose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_galct__D_e \"D Galactarate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_galctn__D_e \"D Galactonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_galctn__L_e \"L Galactonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_galt_e \"Galactitol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_galur_e \"D Galacturonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gam6p_e \"D Glucosamine 6 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gam_e \"D Glucosamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gbbtn_e \"gamma butyrobetaine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gdp_e \"GDP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glc__D_e \"D Glucose exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glcn_e \"D Gluconate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glcr_e \"D Glucarate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glcur1p_e \"D Glucuronate 1 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glcur_e \"D Glucuronate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gln__L_e \"L Glutamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glu__L_e \"L Glutamate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gly_e \"Glycine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyald_e \"D Glyceraldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyb_e \"Glycine betaine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyc2p_e \"Glycerol 2 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyc3p_e \"Glycerol 3 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyc__R_e \" R Glycerate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyc_e \"Glycerol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_glyclt_e \"Glycolate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gmp_e \"GMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gsn_e \"Guanosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gthox_e \"Oxidized glutathione exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gthrd_e \"Reduced glutathione exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gtp_e \"GTP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_gua_e \"Guanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_h2_e \"H2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_h2o2_e \"Hydrogen peroxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_h2o_e \"H2O exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_h2s_e \"Hydrogen sulfide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_h_e \"H exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hacolipa_e \"hepta acylated core oligosaccharide lipid A E coli exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_halipa_e \"hepta acylated KDO 2 lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hdca_e \"Hexadecanoate n C160 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hdcea_e \"hexadecenoate n C161 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hg2_e \"Hg2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_his__L_e \"L Histidine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hom__L_e \"L Homoserine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hxa_e \"Hexanoate n C60 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_hxan_e \"Hypoxanthine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_idon__L_e \"L Idonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ile__L_e \"L Isoleucine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_imp_e \"IMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_indole_e \"Indole exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_inost_e \"myo Inositol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ins_e \"Inosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_isetac_e \"Isethionic acid exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_k_e \"K exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_kdo2lipid4_e \"KDO 2 lipid IV A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lac__D_e \"D lactate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lac__L_e \"L Lactate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lcts_e \"Lactose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_leu__L_e \"L Leucine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lipa__cold_e \"cold adapted KDO 2 lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lipa_e \"KDO 2 lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lys__L_e \"L Lysine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_lyx__L_e \"L Lyxose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mal__D_e \"D Malate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mal__L_e \"L Malate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_malt_e \"Maltose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_malthx_e \"Maltohexaose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_maltpt_e \"Maltopentaose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_malttr_e \"Maltotriose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_maltttr_e \"Maltotetraose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_man6p_e \"D Mannose 6 phosphate exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_man_e \"D Mannose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_manglyc_e \"2 alpha D Mannosyl D glycerate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_melib_e \"Melibiose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_met__D_e \"D Methionine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_met__L_e \"L Methionine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_metsox__R__L_e \"L methionine R sulfoxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_metsox__S__L_e \"L Methionine S oxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mg2_e \"Mg exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_minohp_e \"myo Inositol hexakisphosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mmet_e \"S Methyl L methionine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mn2_e \"Mn2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mnl_e \"D Mannitol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mobd_e \"Molybdate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_mso3_e \"methanesulfonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_n2o_e \"Nitrous oxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_na1_e \"Sodium exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_nac_e \"Nicotinate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_nh4_e \"Ammonia exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ni2_e \"Ni2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_nmn_e \"NMN exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_no2_e \"Nitrite exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_no3_e \"Nitrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_no_e \"Nitric oxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_o2_e \"O2 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_o2s_e \"Superoxide anion exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ocdca_e \"octadecanoate n C180 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ocdcea_e \"octadecenoate n C181 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_octa_e \"octanoate n C80 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_orn_e \"Ornithine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_orot_e \"Orotate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_oaa_e \"Oxaloacetate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pacald_e \"Phenylacetaldehyde exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_peamn_e \"Phenethylamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_phe__L_e \"L Phenylalanine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pheme_e \"Protoheme exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pi_e \"Phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pnto__R_e \" R Pantothenate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ppa_e \"Propionate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ppal_e \"Propanal exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pppn_e \"Phenylpropanoate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ppt_e \"Phosphonate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pro__L_e \"L Proline exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_progly_e \"L Prolinylglycine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_psclys_e \"psicoselysine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pser__L_e \"O Phospho L serine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ptrc_e \"Putrescine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pyr_e \"Pyruvate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_r5p_e \"alpha D Ribose 5 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_rib__D_e \"D Ribose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_rmn_e \"L Rhamnose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_sbt__D_e \"D Sorbitol exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ser__D_e \"D Serine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ser__L_e \"L Serine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_skm_e \"Shikimate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_so2_e \"sulfur dioxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_so3_e \"Sulfite exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_so4_e \"Sulfate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_spmd_e \"Spermidine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_succ_e \"Succinate exchange\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_sucr_e \"Sucrose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_sulfac_e \"sulfoacetate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tartr__L_e \"L tartrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_taur_e \"Taurine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tcynt_e \"Thiocyanate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_thm_e \"Thiamin exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_thr__L_e \"L Threonine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_thrp_e \"L Threonine O 3 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_thym_e \"Thymine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_thymd_e \"Thymidine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tma_e \"Trimethylamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tmao_e \"Trimethylamine N oxide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tre_e \"Trehalose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_trp__L_e \"L Tryptophan exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tsul_e \"Thiosulfate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ttdca_e \"tetradecanoate n C140 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ttdcea_e \"tetradecenoate n C141 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tungs_e \"tungstate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tym_e \"Tyramine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tyr__L_e \"L Tyrosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tyrp_e \"Phosphotyrosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_uacgam_e \"UDP N acetyl D glucosamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udpacgal_e \"UDP N acetyl D galactosamine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udpg_e \"UDPglucose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udpgal_e \"UDPgalactose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udpglcur_e \"UDP D glucuronate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ump_e \"UMP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_ura_e \"Uracil exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_urea_e \"Urea exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_uri_e \"Uridine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_val__L_e \"L Valine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_xan_e \"Xanthine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_xmp_e \"Xanthosine 5 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_xtsn_e \"Xanthosine exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_xyl__D_e \"D Xylose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_xylu__L_e \"L Xylulose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_zn2_e \"Zinc exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Ec_biomass_iAF1260_core_59p81M \"E coli biomass objective function iAF1260   core  with 5981 GAM estimate\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_F6PA \"fructose 6 phosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_F6PP \"D fructose 6 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_F6Pt6_2pp \"Fructose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_F6Ptex \"fructose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA100ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA120ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA140ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA141ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA160ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA161ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FA80ACPHi \"fatty acyl ACP hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE100 \"fatty acid CoA thioesterase decanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE120 \"fatty acid CoA thioesterase dodecanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE140 \"fatty acid CoA thioesterase tetradecanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE141 \"fatty acid CoA thioesterase tetradecenoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE160 \"fatty acid CoA thioesterase hexadecanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE161 \"fatty acid CoA thioesterase hexadecenoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE180 \"fatty acid CoA thioesterase octadecanoate \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE181 \"fatty acid CoA thioesterase octadecenoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE60 \"fatty acid CoA thioesterase hexanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAE80 \"fatty acid CoA thioesterase octanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL100t2pp \"fatty acid CoA ligase decanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL120t2pp \"fatty acid CoA ligase dodecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL140t2pp \"fatty acid CoA ligase tetradecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL141t2pp \"fatty acid CoA ligase tetradecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL160t2pp \"fatty acid CoA ligase hexadecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL161t2pp \"fatty acid CoA ligase hexadecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL180t2pp \"fatty acid CoA ligase octadecanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL181t2pp \"fatty acid CoA ligase octadecenoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL60t2pp \"fatty acid CoA ligase hexanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FACOAL80t2pp \"fatty acid CoA ligase octanoate transport via vectoral Co A coupling \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FADRx \"FAD reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FADRx2 \"FAD reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FALDtex \"formaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FALDtpp \"formaldehyde transport via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FALGTHLs \"formaldehyde glutathione ligase spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FBA \"fructose bisphosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FBP \"fructose bisphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FCI \"L fucose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FCLK \"L fuculokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FCLPA \"L fuculose 1 phosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FCLT \"Ferrochelatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FDH4pp \"formate dehydrogenase quinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FDH5pp \"Formate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE2t2pp \"iron II transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE2tex \"iron II transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE2tpp \"iron 2 transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3DHBZR \"release of Fe III from ferric 2 3 dihydroxybenzoylserine\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3DHBZSabcpp \"ferric 2 3 dihydroxybenzoylserine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3DHBZStonex \"ferric 2 3 dihydroxybenzoylserine transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXR1 \"Fe III hydroxamate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXR2 \"Fe III hydroxamate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXR3 \"Fe III hydroxamate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXUtex \"Fe III hydroxamate unloaded secretion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXUtpp \"Fe III hydroxamate unloaded secretion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXexs \"Fe III hydroxamate Fe loading reaction spontaneaous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXtonex \"Fe III hydroxamine transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3Ri \"Fe III reduction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3tex \"iron III transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMR1 \"Ferrichrome reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMR2 \"Ferrichrome reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMR3 \"Ferrichrome reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMUtex \"ferrichrome minus Fe secretion to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMUtpp \"ferrichrome minus Fe secretion to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMabcpp \"ferrichrome transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMexs \"ferrichrome Fe III loading reaction spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FECRMtonex \"ferrichrome transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERabcpp \"Fe enterobactin transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERexs \"enterobactin Fe III binding spontaneous \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERtonex \"Fe enterobactin transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERtpp \"enterochelin transport secretion \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMUtex \"ferroxamine minus Fe3 secretion to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMUtpp \"ferroxamine minus Fe3 secretion to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMabcpp \"ferroxamine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMexs \"ferroxamine Fe3 loading reaction spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMtonex \"ferroxamine transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROpp \"ferroxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FHL \"Formate hydrogen lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FLDR \"flavodoxin reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FLVR \"flavin reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FLVRx \"flavin reductase NAD \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FMETTRS \"Methionyl tRNA formyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FMNAT \"FMN adenylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FMNRx \"FMN reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FMNRx2 \"FMN reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FORt2pp \"formate transport via proton symport uptake only periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FORtex \"formate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FORtppi \"formate transport via diffusion cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRD2 \"fumarate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRD3 \"fumarate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRUK \"fructose 1 phosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRULYStex \"fructoselysine transporter via diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRUURtex \"D fructuronate transport via diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRUpts2pp \"Fructose transport via PEPPyr PTS f6p generating  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRUptspp \"D fructose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FRUtex \"D fructose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FTHFD \"formyltetrahydrofolate deformylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUCtex \"L fucose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUCtpp \"L fucose transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUM \"fumarase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUMt2_2pp \"Fumarate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUMtex \"Fumarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1PACT \"glucosamine 1 phosphate N acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1PPpp \"Glucose 1 phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1PTT \"glucose 1 phosphate thymidylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1Ptex \"D glucose 1 phosphate transport via diffusion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1SAT \"glutamate 1 semialdehyde aminotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G2PPpp \"glycerol 2 phosphate phosphatase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT120 \"glycerol 3 phosphate acyltransferase C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT140 \"glycerol 3 phosphate acyltransferase C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT141 \"glycerol 3 phosphate acyltransferase C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT160 \"glycerol 3 phosphate acyltransferase C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT161 \"glycerol 3 phosphate acyltransferase C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT180 \"glycerol 3 phosphate acyltransferase C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PAT181 \"glycerol 3 phosphate acyltransferase C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PCabcpp \"sn glycerol 3 phosphocholine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PCtex \"glycero 3 phosphocholine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PD2 \"glycerol 3 phosphate dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PD5 \"glycerol 3 phosphate dehydrogenase ubiquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PD6 \"glycerol 3 phosphate dehydrogenase menaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PD7 \"glycerol 3 phosphate dehydrogenase demethylmenaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PEabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PEtex \"glycero 3 phosphoethanolamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PGabcpp \"sn glycerol 3 phosphoglycerol transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PGtex \"glycerophoglycerol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PIabcpp \"sn glycerol 3 phosphoethanolamine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PItex \"glycero 3 phospho 1 inositol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PSabcpp \"sn glycerol 3 phosphoserine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PStex \"glycerophosphserine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G3PT \"glycerol 3 phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G5SADs \"L glutamate 5 semialdehyde dehydratase spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G5SD \"glutamate 5 semialdehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G6PDA \"glucosamine 6 phosphate deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G6PDH2r \"glucose 6 phosphate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G6PP \"glucose 6 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G6Pt6_2pp \"Glucose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G6Ptex \"glucose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAL1PPpp \"D galactose 1 phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAL1Ptex \"D galactose 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALBDtex \"beta D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTNLtex \"L galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTNt2pp \"D galactonate transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTNtex \"D galactonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTt2rpp \"D galactarte transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTtex \"D galactarte transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALKr \"galactokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALM2pp \"aldose 1 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALS3 \"a galactosidase melibiose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALT1 \"galactosyltransferase I LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALTtex \"Galactitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALURt2rpp \"D galacturonate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALURtex \"D galacturonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALUi \"UTP glucose 1 phosphate uridylyltransferase irreversible \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALabcpp \"D galactose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALt2pp \"D galactose transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALtex \"D galactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAM6Pt6_2pp \"D Glucosamine 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAMAN6Ptex \"D glucosamine 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAMptspp \"D glucosamine transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAMtex \"D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GAPD \"glyceraldehyde 3 phosphate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GARFT \"phosphoribosylglycinamide formyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GART \"GAR transformylase T\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GBBTNtex \"gamma butyrobetaine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GDMANE \"GDP 4 dehydro 6 deoxy D mannose epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GDPDPK \"GDP diphosphokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GDPMNH \"GDP mannose mannosyl hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GDPMNP \"GDP mannose phyrophosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GDPtex \"GDP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GF6PTA \"glutamine fructose 6 phosphate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GHMT2r \"glycine hydroxymethyltransferase reversible\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GK1 \"guanylate kinase GMPATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLBRAN2 \"1 4 alpha glucan branching enzyme glycogen  bglycogen \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCATr \"D glucose O acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCDpp \"Glucose dehydrogenase ubiquinone 8 as acceptor  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCNt2rpp \"D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCNtex \"D gluconate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCP \"glycogen phosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCP2 \"glycogen phosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCRAL \"5 dehydro 4 deoxyglucarate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCRD \"glucarate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCRt2rpp \"D glucarate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCRtex \"D glucarate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCS1 \"glycogen synthase ADPGlc \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCTR1 \"glucosyltransferase I LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCTR2 \"glucosyltransferase II LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCTR3 \"glucosyltransferase III LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCUR1Ptex \"D glucuronate 1 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCURt2rpp \"D glucuronate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCURtex \"D glucuronat transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCabcpp \"D glucose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCptspp \"D glucose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCt2pp \"D glucose transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCtex \"glucose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLCtexi \"D glucoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLDBRAN2 \"glycogen debranching enzyme bglycogen  glycogen \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLGC \"glucose 1 phosphate adenylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLNS \"glutamine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLNTRS \"Glutaminyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLNabcpp \"L glutamine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLNtex \"L glutamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLU5K \"glutamate 5 kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUCYS \"gamma glutamylcysteine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUDy \"glutamate dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUN \"glutaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUNpp \"glutaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUPRT \"glutamine phosphoribosyldiphosphate amidotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUR \"glutamate racemase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUSy \"glutamate synthase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUTRR \"glutamyl tRNA reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUTRS \"Glutamyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUabcpp \"L glutamate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUt2rpp \"L glutamate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUt4pp \"Naglutamate symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLUtex \"L glutamate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLXCL \"glyoxalate carboligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYALDtex \"Glyceraldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYALDtpp \"Glyceraldehyde facilitated diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYAT \"glycine C acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYBabcpp \"Glycine betaine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYBtex \"Glycine betaine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYC2Ptex \"Glycerol 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYC3Pabcpp \"sn Glycerol 3 phosphate transport via ABC system periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYC3Pt6pp \"Glycerol 3 phosphate phosphate antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYC3Ptex \"Glycerol 3 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCAt2rpp \"D glycerate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCAtex \"D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCDx \"Glycerol dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCK \"glycerate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCK2 \"glycerate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCL \"Glycine Cleavage System\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCLTDx \"Glycolate dehydrogenase NAD \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCLTDy \"Glycolate dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCLTt2rpp \"glycolate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCLTt4pp \"glycolate transport via sodium symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCLTtex \"glycolate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCTO2 \"Glycolate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCTO3 \"Glycolate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCTO4 \"Glycolate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCtex \"glycerol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYCtpp \"glycerol transport via channel periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYK \"glycerol kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYOX \"hydroxyacylglutathione hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYOX3 \"glyoxalase III\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYTRS \"Glycyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYt2pp \"glycine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYtex \"Glycine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMAND \"GDP D mannose dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMHEPAT \"D glycero D manno hepose 1 phosphate adenyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMHEPK \"D glycero D manno heptose 7 phosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMHEPPA \"D glycero D manno heptose 1 7 bisphosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMPR \"GMP reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMPS2 \"GMP synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GMPtex \"GMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GND \"phosphogluconate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GNK \"gluconokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GOFUCR \"GDP 4 oxo L fucose reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA1 \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA1pp \"Glycerophosphodiester phosphodiesterase Glycerophosphocholine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA2 \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA2pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoethanolamine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA3 \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA3pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoserine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA4 \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA4pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoglycerol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA5 \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GPDDA5pp \"Glycerophosphodiester phosphodiesterase Glycerophosphoinositol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GRTT \"geranyltranstransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GRXR \"glutaredoxin reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSNK \"guanosine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSNt2pp \"guanosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSNtex \"guanosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSPMDA \"Glutathionylspermidine amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSPMDS \"Glutathionylspermidine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHOXtex \"glutathione ox transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHOr \"glutathione oxidoreductase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHRDHpp \"glutathione hydralase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHRDabc2pp \"glutathione export via ABC system cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHRDabcpp \"Reduced glutathione via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHRDtex \"glutathione transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTHS \"glutathione synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPCI \"GTP cyclohydrolase I\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPCII2 \"GTP cyclohydrolase II 25drapp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPDPDP \"guanosine 5 triphosphate 3 diphosphate diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPDPK \"GTP diphosphokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPHs \"GTP amine hydrolysis spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GTPtex \"GTP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUAPRT \"guanine phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUAt2pp \"guanine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUAtex \"Guanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUAtpp \"Guanine transport via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUR1PPpp \"Glucuronate 1 phosphate phosphatase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2O2tex \"hydrogen peroxide transport via diffusion external \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2Otex \"H2O transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2Otpp \"H2O transport via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2SO \"Hydrogen sulfide oxidation\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2St1pp \"h2s transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2Stex \"h2s transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2tex \"hydrogen transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_H2tpp \"hydrogen transport diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD1i \"3 hydroxyacyl CoA dehydrogenase acetoacetyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD2i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD3i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD4i \"3 hydroxyacyl CoA dehydrogenase 3 oxodecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD5i \"3 hydroxyacyl CoA dehydrogenase 3 oxododecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD6i \"3 hydroxyacyl CoA dehydrogenase 3 oxotetradecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD7i \"3 hydroxyacyl CoA dehydrogenase 3 oxohexadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HACD8i \"3 hydroxyacyl CoA dehydrogenase 3 oxooctadecanoyl CoA \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HBZOPT \"Hydroxybenzoate octaprenyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HCINNMtex \"3 hydroxycinnamic acid transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HCO3E \"HCO3 equilibration reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HDCAtexi \"Hexadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HDCEAtexi \"Hexadecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HDCOAI \"hexadecenoyl coa cis trans isomerization\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEMEOS \"Heme O synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPK1 \"LPS heptose kinase I LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPK2 \"LPS heptose kinase II LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPT1 \"heptosyltransferase I LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPT2 \"heptosyltransferase II LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPT3 \"heptosyltransferase III LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEPT4 \"heptosyltransferase IV LPS core synthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HETZK \"hydroxyethylthiazole kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEX1 \"hexokinase D glucoseATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEX4 \"hexokinase D mannoseATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEX7 \"hexokinase D fructoseATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HG2abcpp \"Mercury Hg2 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HG2tex \"mercury Hg2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISTD \"histidinol dehydrogenase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISTP \"histidinol phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISTRS \"Histidyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISabcpp \"L histidine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISt2rpp \"L histidine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HIStex \"L histidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HMBS \"hydroxymethylbilane synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HMPK1 \"hydroxymethylpyrimidine kinase ATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HOMt2pp \"L homoserineserine efflux via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HOMtex \"L homoserine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HPPK2 \"6 hydroxymethyl dihydropterin pyrophosphokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HPPPNtex \"3 3 hydroxyphenyl propionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HPYRI \"hydroxypyruvate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HPYRRx \"Hydroxypyruvate reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HPYRRy \"Hydroxypyruvate reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HSDy \"homoserine dehydrogenase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HSK \"homoserine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HSST \"homoserine O succinyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HSTPT \"histidinol phosphate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HXAtex \"Hexanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HXPRT \"hypoxanthine phosphoribosyltransferase Hypoxanthine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYPOE \"hypothetical enyme\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYXNtex \"Hypoxanthine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYXNtpp \"Hypoxanthine transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Htex \"proton transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICDHyr \"isocitrate dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICHORS \"isochorismate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICHORSi \"Isochorismate Synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICHORT \"isochorismatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICL \"Isocitrate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IDOND \"L idonate 5 dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IDOND2 \"L indonate 5 dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IDONt2rpp \"L idonate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IDONtex \"L idonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IG3PS \"Imidazole glycerol 3 phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IGPDH \"imidazoleglycerol phosphate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IGPS \"indole 3 glycerol phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ILETA \"isoleucine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ILETRS \"Isoleucyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ILEabcpp \"L isoleucine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ILEt2rpp \"L isoleucine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ILEtex \"L isoleucine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IMPC \"IMP cyclohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IMPD \"IMP dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IMPtex \"IMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INDOLEt2pp \"Indole transport via proton symport irreversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INDOLEt2rpp \"Indole transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INDOLEtex \"Indole transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INSH \"Inosine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INSK \"insosine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INSTtex \"inositol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INSt2pp \"inosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INSt2rpp \"inosine transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INStex \"inosine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPDDI \"isopentenyl diphosphate D isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPDPS \"1 hydroxy 2 methyl 2 E butenyl 4 diphosphate reductase ipdp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPMD \"3 isopropylmalate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPPMIa \"3 isopropylmalate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPPMIb \"2 isopropylmalate hydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_IPPS \"2 isopropylmalate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ISETACtex \"isethionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_K2L4Aabcpp \"KDO 2 lipid IV A transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_K2L4Atex \"KDO 2 lipid IV A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KARA1 \"ketol acid reductoisomerase 2 3 dihydroxy 3 methylbutanoate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KARA2 \"ketol acid reductoisomerase 2 Acetolactate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAS14 \"beta ketoacyl ACP synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAS15 \"beta ketoacyl ACP synthase 2 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT1 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT2 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT3 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT4 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT5 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT6 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT7 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KAT8 \"3 ketoacyl CoA thiolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KDOCT2 \"3 deoxy manno octulosonate cytidylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KDOPP \"3 deoxy manno octulosonate 8 phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KDOPS \"3 deoxy D manno octulosonic acid 8 phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_KG6PDC \"3 keto L gulonate 6 phosphate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Kabcpp \"Potassium ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Kt2pp \"potassium transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Kt3pp \"potassium transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Ktex \"potassium transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LA4NTpp \"4 amino 4 deoxy L arabinotransferase LPS lipid A modification periplasmic face of membrane \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LADGMDH \"L alanyl gamma D glutamyl meso diaminopimelate hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LALDO2x \"D LactaldehydeNAD 1 oxidoreductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LALGP \"L alanyl gamma L glutamate peptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LCARR \"lacaldehyde reductase R propane 1 2 diol forming \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LCARS \"lacaldehyde reductase S propane 1 2 diol forming \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LCTStex \"Lactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LDH_D \"D lactate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LDH_D2 \"D lactate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUTAi \"leucine transaminase irreversible \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUTRS \"Leucyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUabcpp \"L leucine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUt2rpp \"L leucine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUtex \"L leucine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LGTHL \"lactoylglutathione lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LIPACabcpp \"lipid cold A transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LIPAabcpp \"lipid A transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LIPAtex \"lipid A transport via vector periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPADSS \"Lipid A disaccaride synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A120pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A140pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A141pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A160pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C160  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A161pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A180pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1A181pp \"Lysophospholipase L1 2 acylglycerophosphotidate n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E120pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E140pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E141pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E160pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E161pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E180pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1E181pp \"Lysophospholipase L1 2 acylglycerophosphoethanolamine n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G120pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G140pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G141pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G160pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G161pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G180pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL1G181pp \"Lysophospholipase L1 2 acylglycerophosphoglycerol n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A120 \"Lysophospholipase L2 2 acylglycerophosphotidate n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A140 \"Lysophospholipase L2 2 acylglycerophosphotidate n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A141 \"Lysophospholipase L2 2 acylglycerophosphotidate n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A160 \"Lysophospholipase L2 2 acylglycerophosphotidate n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A161 \"Lysophospholipase L2 2 acylglycerophosphotidate n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A180 \"Lysophospholipase L2 2 acylglycerophosphotidate n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2A181 \"Lysophospholipase L2 2 acylglycerophosphotidate n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATE181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoethanolamine n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG120 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG140 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG141 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG160 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG161 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG180 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2ATG181 \"Lysophospholipase L2 acyltransferase 2 acyl glycerophosphoglycerol n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E120 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E140 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E141 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E160 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E161 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C161 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E180 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2E181 \"Lysophospholipase L2 2 acylglycerophosphoethanolamine n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G120 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G140 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G141 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G160 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G161 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G180 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LPLIPAL2G181 \"Lysophospholipase L2 2 acylglycerophosphoglycerol n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LSERDHr \"L serine dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYSDC \"lysine decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYSTRS \"Lysyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYSabcpp \"L lysine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYSt2pp \"L lysine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYSt3pp \"L lysine transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYStex \"L lysine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYXI \"Lyxose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYXt2pp \"L Lyxose transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LYXtex \"L Lyxose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_L_LACD2 \"L Lactate dehydrogenase ubiquinone \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_L_LACD3 \"L Lactate dehydrogenase menaquinone \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_L_LACt2rpp \"L lactate reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_L_LACtex \"L lactate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_M1PD \"mannitol 1 phosphate 5 dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MACPD \"Malonyl ACP decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALDt2_2pp \"D Malate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALDtex \"D Malate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALS \"malate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTATr \"maltose O acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTHXabcpp \"maltohexaose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTHXtexi \"maltohexaose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTPTabcpp \"maltopentaose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTPTtexi \"maltopentaoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTTRabcpp \"Maltotriose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTTRtexi \"Maltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTTTRabcpp \"maltotetraose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTTTRtexi \"maltotetraoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTabcpp \"maltose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTptspp \"maltose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALTtexi \"maltoseMaltotriose transport via diffusion extracellular to periplasm irreversible\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALt2_2pp \"Malate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALtex \"Malate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MAN6PI \"mannose 6 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MAN6Pt6_2pp \"Mannose 6 phosphate transport via phosphate antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MAN6Ptex \"Mannose 6 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MANGLYCtex \"2 O alpha mannosyl D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MANptspp \"D mannose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MANtex \"D mannose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCITD \"2 methylcitrate dehydratase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCITL2 \"methylisocitrate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCITS \"2 methylcitrate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCOATA \"Malonyl CoA ACP transacylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCPST \"3 mercaptopyruvate sulfurtransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCTP1App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCTP1Bpp \"murein crosslinking transpeptidase 1B A2pm A2pm  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MCTP2App \"murein crosslinking transpeptidase 1A A2pm D ala  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDCP1pp \"murein D D carboxypeptidase murein5px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDCP2pp \"murein D D carboxypeptidase murein5px4px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDCP3pp \"murein D D carboxypeptidase murein5p5p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDCP4pp \"murein D D carboxypeptidase murein5p4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDCP5pp \"murein D D carboxypeptidase murein5p3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDEP1pp \"murein D D endopeptidase murein4px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDEP2pp \"murein D D endopeptidase murein3px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDEP3pp \"murein D D endopeptidase murein5px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDDEP4pp \"murein D D endopeptidase murein4px4px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDH \"malate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MDRPD \"5 Methylthio 5 deoxy D ribulose 1 phosphate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ME1 \"malic enzyme NAD \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ME2 \"malic enzyme NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MECDPDH2 \"2C methyl D erythritol 2 4 cyclodiphosphate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MECDPS \"2 C methyl D erythritol 2 4 cyclodiphosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MELIBt2pp \"melibiose transport in via symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MELIBt3ipp \"melibiose transport in via antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MELIBtex \"melibiose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MEPCT \"2 C methyl D erythritol 4 phosphate cytidylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METAT \"methionine adenosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METDabcpp \"D methionine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METDtex \"D methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METOX1s \"methionine oxidation spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METOX2s \"methionine oxidation 2 spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METS \"methionine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOX1abcpp \"L methionine S oxide transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOX1tex \"L methionine S oxide diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOX2abcpp \"L methionine R oxide transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOX2tex \"L methionine R oxide diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOXR1 \"L methionine S oxide reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METSOXR2 \"L methionine R sulfoxide reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METTRS \"Methionyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METabcpp \"L methionine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_METtex \"L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MG2t3_2pp \"magnesium Mg2 transport inout via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MG2tex \"magnesium Mg2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MG2tpp \"magnesium 2 transport in via diffusion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MGSA \"methylglyoxal synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MI1PP \"myo inositol 1 phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MICITD \"2 methylisocitrate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MINOHPtexi \"myo inositol phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDCP1App \"murein L D carboxypeptidase murein5px4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDCP1Bpp \"murein L D carboxypeptidase murein4p4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDCP2App \"murein L D carboxypeptidase murein5p5p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDCP2Bpp \"murein L D carboxypeptidase murein4p3p  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDCP3App \"murein L D carboxypeptidase murein5px3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDEP1pp \"murein L D endopeptidase murein3px3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLDEP2pp \"murein L D endopeptidase murein5px3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTG1 \"Maltodextrin glucosidase maltotriose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTG2 \"Maltodextrin glucosidase maltotetraose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTG3 \"Maltodextrin glucosidase maltopentaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTG4 \"Maltodextrin glucosidase maltohexaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTG5 \"Maltodextrin glucosidase maltoheptaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTGY1pp \"murein lytic transglycosylase murein4p4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTGY2pp \"murein lytic transglycosylase murein4p3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTGY3pp \"murein lytic transglycosylase murein3p3p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTGY4pp \"murein lytic transglycosylase murein4px4p4p  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTP1 \"Maltodextrin phosphorylase maltopentaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTP2 \"Maltodextrin phosphorylase maltohexaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MLTP3 \"Maltodextrin phosphorylase maltoheptaose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MME \"methylmalonyl CoA epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MMETtex \"S methyl L methionine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MN2t3pp \"manganese Mn2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MN2tpp \"manganese transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MN6PP \"mannose 6 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MNLptspp \"mannitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MNLtex \"mannitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MNt2pp \"manganese Mn2 transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MNtex \"Manganese Mn2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOAT \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOAT2 \"3 deoxy D manno octulosonic acid transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOAT3C \"3 deoxy D manno octulosonic acid transferase III LPS core biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOBDabcpp \"molybdate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOBDtex \"molybdate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MOHMT \"3 methyl 2 oxobutanoate hydroxymethyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MPTG \"murein polymerizing transglycosylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MPTG2 \"murein polymerizing transglycosylase 2 three linked units \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MSO3tex \"methanesulfonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTAN \"methylthioadenosine nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTHFC \"methenyltetrahydrofolate cyclohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTHFD \"methylenetetrahydrofolate dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTHFR2 \"5 10 methylenetetrahydrofolate reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTRI \"5 methylthioribose 1 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTRK \"5 methylthioribose kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MTRPOX \"N methyltryptophan oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_N2Otex \"nitrious oxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_N2Otpp \"nitrious oxide transport diffusion \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NACODA \"N acetylornithine deacetylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NACtex \"Nicotinic acid transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NACtpp \"Nicotinic acid uptake periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADDP \"NAD diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH10 \"NADH dehydrogenase menaquinone 8 0 protons \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH16pp \"NADH dehydrogenase ubiquinone 8 3 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH17pp \"NADH dehydrogenase menaquinone 8 3 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH18pp \"NADH dehydrogenase demethylmenaquinone 8 3 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH5 \"NADH dehydrogenase ubiquinone 8 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADH9 \"NADH dehydrogenase demethylmenaquinone 8 0 protons \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADK \"NAD kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADN \"NAD nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADPHQR2 \"NADPH Quinone Reductase Ubiquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADPHQR3 \"NADPH Quinone Reductase Menaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADPHQR4 \"NADPH Quinone Reductase 2 Demethylmenaquinone 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADPPPS \"NADP phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADS1 \"NAD synthase nh3 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NADTRHD \"NAD transhydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NAMNPP \"nicotinic acid mononucleotide pyrophosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NAt3_1p5pp \"sodium proton antiporter HNA is 15  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NAt3_2pp \"sodium proton antiporter HNA is 2  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NAtex \"sodium transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK1 \"nucleoside diphosphate kinase ATPGDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK2 \"nucleoside diphosphate kinase ATPUDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK3 \"nucleoside diphosphate kinase ATPCDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK4 \"nucleoside diphosphate kinase ATPdTDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK5 \"nucleoside diphosphate kinase ATPdGDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK6 \"nucleoside diphosphate kinase ATPdUDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK7 \"nucleoside diphosphate kinase ATPdCDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NDPK8 \"nucleoside diphosphate kinase ATPdADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NH4tex \"ammonia transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NH4tpp \"ammonia reversible transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NHFRBO \"NADHflavorubredoxin oxidoreductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NI2abcpp \"Nickle Ni2 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NI2t3pp \"nickle Ni2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NI2tex \"nickel transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNAT \"nicotinamide nucleotide adenylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNDA \"nicotinamide nucleotide amidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNN \"NMN nucleosidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNPtpp \"NMN permease periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNt7pp \"NMN transport via NMN glycohydrolase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNtex \"NMN transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NNAM \"nicotinamidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NNATr \"nicotinate nucleotide adenylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NNDPR \"nicotinate nucleotide diphosphorylase carboxylating \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO2t2rpp \"nitrite transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO2tex \"nitrite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3R1bpp \"Nitrate reductase Ubiquinol 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3R1pp \"Nitrate reductase Ubiquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3R2bpp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3R2pp \"Nitrate reductase Menaquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3t7pp \"nitrate transport in via nitrite antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NO3tex \"nitrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NODOx \"nitric oxide dioxygenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NODOy \"nitric oxide dioxygenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NOtex \"nitric oxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NOtpp \"NO transport diffusion \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NPHS \"naphthoate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD1 \"5 nucleotidase dUMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD10 \"5 nucleotidase XMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD10pp \"5 nucleotidase XMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD11 \"5 nucleotidase IMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD11pp \"5 nucleotidase IMP \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD12 \"5 nucleotidase dIMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD12pp \"5 nucleotidase dIMP  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD1pp \"5 nucleotidase dUMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD2 \"5 nucleotidase UMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD2pp \"5 nucleotidase UMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD3 \"5 nucleotidase dCMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD3pp \"5 nucleotidase dCMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD4 \"5 nucleotidase CMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD4pp \"5 nucleotidase CMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD5 \"5 nucleotidase dTMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD5pp \"5 nucleotidase dTMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD6 \"5 nucleotidase dAMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD6pp \"5 nucleotidase dAMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD7 \"5 nucleotidase AMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD7pp \"5 nucleotidase AMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD8 \"5 nucleotidase dGMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD8pp \"5 nucleotidase dGMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD9 \"5 nucleotidase GMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTD9pp \"5 nucleotidase GMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP1 \"nucleoside triphosphatase ATP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP10 \"nucleoside triphosphatase ITP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP11 \"nucleoside triphosphatase dITP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP12 \"nucleoside triphosphatase XTP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP3 \"nucleoside triphosphatase GTP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTP5 \"nucleoside triphosphatase CTP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP1 \"Nucleoside triphosphate pyrophosphorylase dgtp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP10 \"Nucleoside triphosphate pyrophosphorylase ditp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP11 \"Nucleoside triphosphate pyrophosphorylase xtp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP2 \"Nucleoside triphosphate pyrophosphorylase gtp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP3 \"Nucleoside triphosphate pyrophosphorylase dctp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP4 \"Nucleoside triphosphate pyrophosphorylase ctp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP5 \"Nucleoside triphosphate pyrophosphorylase datp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP6 \"Nucleoside triphosphate pyrophosphorylase atp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP7 \"Nucleoside triphosphate pyrophosphorylase dttp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP8 \"Nucleoside triphosphate pyrophosphorylase utp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPP9 \"Nucleoside triphosphate pyrophosphorylase itp \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPTP1 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTPTP2 \"Nucleoside triphosphate tripolyhydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTRIR2x \"nitrite Reductase NADH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTRIR3pp \"nitrite Reductase Ubiquinole 8 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NTRIR4pp \"nitrite Reductase Menaquinole 8 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_O2Stex \"superoxide anion transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_O2tex \"oxygen transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_O2tpp \"o2 transport via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAADC \"oxaloacetate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OBTFL \"2 Oxobutanoate formate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCDCAtexi \"Octadecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCDCEAtexi \"Octadecenoate n C181 transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCTAtex \"Octanoate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCTDPS \"Octaprenyl pyrophosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ODECOAI \"Octadecenoyl coa cis trans isomerization\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OHPBAT \"O Phospho 4 hydroxy L threonine2 oxoglutarate aminotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OHPHM \"2 octaprenyl 6 hydroxyphenol methylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMBZLM \"2 Octaprenyl 6 methoxy benzoquinol methylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMCDC \"2 Oxo 4 methyl 3 carboxypentanoate decarboxylation\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMMBLHX \"2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMMBLHX3 \"2 Octaprenyl 3 methyl 6 methoxy 1 4 benzoquinol hydroxylase anaerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMPDC \"orotidine 5 phosphate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMPHHX \"2 octaprenyl 6 methoxyphenol hydroxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMPHHX3 \"2 octaprenyl 6 methoxyphenol hydroxylase anaerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OPHBDC \"Octaprenyl hydroxybenzoate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OPHHX \"2 Octaprenylphenol hydroxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OPHHX3 \"2 Octaprenylphenol hydroxylase anaerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ORNDC \"Ornithine Decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ORNabcpp \"ornithine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ORNtex \"ornithine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OROTt2_2pp \"Orotate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAAt2_2pp \"Oxaloacetate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OROTtex \"Orotate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAAtex \"Oxaloacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ORPT \"orotate phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OXAMTC \"oxamate transcarbamoylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OXGDC2 \"2 oxoglutarate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_P5CD \"1 pyrroline 5 carboxylate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_P5CR \"pyrroline 5 carboxylate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA120abcpp \"phosphatidate transport via ABC system n C120 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA140abcpp \"phosphatidate transport via ABC system n C140 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA141abcpp \"phosphatidate transport via ABC system n C141 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA160abcpp \"phosphatidate transport via ABC system n C160 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA161abcpp \"phosphatidate transport via ABC system n C161 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA180abcpp \"phosphatidate transport via ABC system n C180 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PA181abcpp \"phosphatidate transport via ABC system n C181 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PACALDt2rpp \"phenylacetaldehyde reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PACALDtex \"phenethylacetaldehyde transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PANTS \"pantothenate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA120 \"Phosphatidate phosphatase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA120pp \"Phosphatidate phosphatase periplasmic n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA140 \"Phosphatidate phosphatase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA140pp \"Phosphatidate phosphatase periplasmic n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA141 \"Phosphatidate phosphatase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA141pp \"Phosphatidate phosphatase periplasmic n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA160 \"Phosphatidate phosphatase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA160pp \"Phosphatidate phosphatase periplasmic n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA161 \"Phosphatidate phosphatase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA161pp \"Phosphatidate phosphatase periplasmic n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA180 \"Phosphatidate phosphatase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA180pp \"Phosphatidate phosphatase periplasmic n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA181 \"Phosphatidate phosphatase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPA181pp \"Phosphatidate phosphatase periplasmic n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPPT3 \"phospho N acetylmuramoyl pentapeptide transferase meso 2 6 diaminopimelate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPSR \"phosphoadenylyl sulfate reductase thioredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PAPSR2 \"phosphoadenylyl sulfate reductase glutaredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PDH \"pyruvate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PDX5PO2 \"pyridoxine 5 phosphate oxidase anaerboic\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PDX5POi \"pyridoxine 5 phosphate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PDX5PS \"Pyridoxine 5 phosphate synthase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PDXPP \"Pyridoxine 5 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE120abcpp \"phosphatidylethanolamine transport via ABC system n C120 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE140abcpp \"phosphatidylethanolamine transport via ABC system n C140 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE141abcpp \"phosphatidylethanolamine transport via ABC system n C141 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE160abcpp \"phosphatidylethanolamine transport via ABC system n C160 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE161abcpp \"phosphatidylethanolamine transport via ABC system n C161 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE180abcpp \"phosphatidylethanolamine transport via ABC system n C180 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PE181abcpp \"phosphatidylethanolamine transport via ABC system n C181 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PEAMNtex \"phenethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PERD \"Erythronate 4 phosphate 4per dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PETNT161pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PETNT181pp \"phosphoethanolamine transferase c C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PFK \"phosphofructokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PFK_2 \"Phosphofructokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PFL \"pyruvate formate lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG120abcpp \"phosphatidylglycerol transport via ABC system n C120 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG140abcpp \"phosphatidylglycerol transport via ABC system n C140 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG141abcpp \"phosphatidylglycerol transport via ABC system n C141 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG160abcpp \"phosphatidylglycerol transport via ABC system n C160 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG161abcpp \"phosphatidylglycerol transport via ABC system n C161 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG180abcpp \"phosphatidylglycerol transport via ABC system n C180 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PG181abcpp \"phosphatidylglycerol transport via ABC system n C181 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGAMT \"phosphoglucosamine mutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGCD \"phosphoglycerate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGI \"glucose 6 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGK \"phosphoglycerate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGL \"6 phosphogluconolactonase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGLYCP \"Phosphoglycolate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGM \"phosphoglycerate mutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGMT \"phosphoglucomutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP120abcpp \"phosphatidylglycerophosphate transport via ABC system n C120 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP140abcpp \"phosphatidylglycerophosphate transport via ABC system n C140 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP141abcpp \"phosphatidylglycerophosphate transport via ABC system n C141 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP160abcpp \"phosphatidylglycerophosphate transport via ABC system n C160 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP161abcpp \"phosphatidylglycerophosphate transport via ABC system n C161 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP180abcpp \"phosphatidylglycerophosphate transport via ABC system n C180 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGP181abcpp \"phosphatidylglycerophosphate transport via ABC system n C181 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP120 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP120pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP140 \"phosphatidylglycerol phosphate phosphatase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP140pp \"phosphatidylglycerol phosphate phosphatase periplasm n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP141 \"phosphatidylglycerol phosphate phosphatase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP141pp \"phosphatidylglycerol phosphate phosphatase periplasm n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP160 \"phosphatidylglycerol phosphate phosphatase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP160pp \"phosphatidylglycerol phosphate phosphatase periplasm n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP161 \"phosphatidylglycerol phosphate phosphatase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP161pp \"phosphatidylglycerol phosphate phosphatase periplasm n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP180 \"phosphatidylglycerol phosphate phosphatase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP180pp \"phosphatidylglycerol phosphate phosphatase periplasm n C180 \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP181 \"phosphatidylglycerol phosphate phosphatase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGPP181pp \"phosphatidylglycerol phosphate phosphatase periplasm n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA120 \"Phosphatidylglycerol synthase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA140 \"Phosphatidylglycerol synthase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA141 \"Phosphatidylglycerol synthase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA160 \"Phosphatidylglycerol synthase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA161 \"Phosphatidylglycerol synthase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA180 \"Phosphatidylglycerol synthase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PGSA181 \"Phosphatidylglycerol synthase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHEMEabcpp \"protoheme transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHEMEtiex \"protoheme transport irreversible out via diffusion periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHETA1 \"phenylalanine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHETRS \"Phenylalanyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHEt2rpp \"L phenylalanine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PHEtex \"L phenylalanine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PIt2rpp \"phosphate reversible transport via symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PItex \"phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PIuabcpp \"phosphate transport via ABC system uptake periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A120pp \"Phospholipase A1 phosphatidate n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A140pp \"Phospholipase A1 phosphatidate n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A141pp \"Phospholipase A1 phosphatidate n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A160pp \"Phospholipase A1 phosphatidate n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A161pp \"Phospholipase A1 phosphatidate n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A180pp \"Phospholipase A1 phosphatidate n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1A181pp \"Phospholipase A1 phosphatidate n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E120pp \"Phospholipase A1 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E140pp \"Phospholipase A1 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E141pp \"Phospholipase A1 phosphatidylethanolamine n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E160pp \"Phospholipase A1 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E161pp \"Phospholipase A1 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E180pp \"Phospholipase A1 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1E181pp \"Phospholipase A1 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G120pp \"Phospholipase A1 phosphatidylglycerol n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G140pp \"Phospholipase A1 phosphatidylglycerol n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G141pp \"Phospholipase A1 phosphatidylglycerol n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G160pp \"Phospholipase A1 phosphatidylglycerol n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G161pp \"Phospholipase A1 phosphatidylglycerol n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G180pp \"Phospholipase A1 phosphatidylglycerol n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA1G181pp \"Phospholipase A1 phosphatidylglycerol n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A120pp \"Phospholipase A2 phosphatidate n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A140pp \"Phospholipase A2 phosphatidate n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A141pp \"Phospholipase A2 phosphatidate n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A160pp \"Phospholipase A2 phosphatidate n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A161pp \"Phospholipase A2 phosphatidate n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A180pp \"Phospholipase A2 phosphatidate n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2A181pp \"Phospholipase A2 phosphatidate n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E120pp \"Phospholipase A2 phosphatidylethanolamine n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E140pp \"Phospholipase A2 phosphatidylethanolamine n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E141pp \"Phospholipase A2 phosphatidylethanolamine n C141  periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E160pp \"Phospholipase A2 phosphatidylethanolamine n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E161pp \"Phospholipase A2 phosphatidylethanolamine n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E180pp \"Phospholipase A2 phosphatidylethanolamine n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2E181pp \"Phospholipase A2 phosphatidylethanolamine n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G120pp \"Phospholipase A2 phosphatidylglycerol n C120  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G140pp \"Phospholipase A2 phosphatidylglycerol n C140  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G141pp \"Phospholipase A2 phosphatidylglycerol n C141  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G160pp \"Phospholipase A2 phosphatidylglycerol n C160  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G161pp \"Phospholipase A2 phosphatidylglycerol n C161  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G180pp \"Phospholipase A2 phosphatidylglycerol n C180  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PLIPA2G181pp \"Phospholipase A2 phosphatidylglycerol n C181  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PMDPHT \"pyrimidine phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PMPK \"phosphomethylpyrimidine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PNTK \"pantothenate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PNTOt4pp \"Pantothenate sodium symporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PNTOtex \"Pantothenate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_POX \"pyruvate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPA \"inorganic diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPA2 \"inorganic triphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPAKr \"Propionate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPALtex \"propanal transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPALtpp \"propanal transport via channel periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPAt4pp \"NaPropionate symporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPAtex \"propionate transport via diffusion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPBNGS \"porphobilinogen synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPC \"phosphoenolpyruvate carboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPCDC \"phosphopantothenoylcysteine decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPCK \"phosphoenolpyruvate carboxykinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPGPPDP \"guanosine 3 5 bis diphosphate 3 diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPK2r \"polyphosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPKr \"polyphosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPM \"phosphopentomutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPM2 \"phosphopentomutase 2 deoxyribose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPNCL2 \"phosphopantothenate cysteine ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPND \"prephenate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPNDH \"prephenate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPPGO \"protoporphyrinogen oxidase aerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPPGO3 \"protoporphyrinogen oxidase anaerobic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPPNt2rpp \"3 phenylpropionate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPPNtex \"3 phenylpropionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPS \"phosphoenolpyruvate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PPTtex \"Phosphonate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRAGSr \"phosphoribosylglycinamide synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRAIS \"phosphoribosylaminoimidazole synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRAIi \"phosphoribosylanthranilate isomerase irreversible \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRAMPC \"phosphoribosyl AMP cyclohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRASCSi \"phosphoribosylaminoimidazolesuccinocarboxamide synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRATPP \"phosphoribosyl ATP pyrophosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRFGS \"phosphoribosylformylglycinamidine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRMICI \"1 5 phosphoribosyl 5 5 phosphoribosylamino methylideneamino imidazole 4 carboxamide isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROD2 \"Proline dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROGLYabcpp \"L Prolinylglycine Pro Gly transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROGLYtex \"L Prolinylglycine transport via diffusion extracellular to periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROTRS \"Prolyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROabcpp \"L proline transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROt4pp \"NaProline L symporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROtex \"L proline transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PRPPS \"phosphoribosylpyrophosphate synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSCLYStex \"psicoselysine transporter via diffusion extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSCVT \"3 phosphoshikimate 1 carboxyvinyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD120 \"Phosphatidylserine decarboxylase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD140 \"Phosphatidylserine decarboxylase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD141 \"Phosphatidylserine decarboxylase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD160 \"Phosphatidylserine decarboxylase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD161 \"Phosphatidylserine decarboxylase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD180 \"Phosphatidylserine decarboxylase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSD181 \"Phosphatidylserine decarboxylase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSERT \"phosphoserine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSERtex \"phospho L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSP_L \"phosphoserine phosphatase L serine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSP_Lpp \"phospho L serine phosphatase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA120 \"Phosphatidylserine syntase n C120 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA140 \"Phosphatidylserine syntase n C140 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA141 \"Phosphatidylserine syntase n C141 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA160 \"Phosphatidylserine syntase n C160 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA161 \"Phosphatidylserine syntase n C161 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA180 \"Phosphatidylserine syntase n C180 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSSA181 \"Phosphatidylserine syntase n C181 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTA2 \"Phosphate acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTAr \"phosphotransacetylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTHRpp \"phospho L threonine phosphatase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTPATi \"pantetheine phosphate adenylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTRCORNt7pp \"putrescineornithine antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTRCTA \"Putrescine Transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTRCabcpp \"putrescine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTRCt2pp \"putrescine transport in via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PTRCtex \"putrescine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP1 \"purine nucleoside phosphorylase Adenosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP2 \"purine nucleoside phosphorylase Deoxyadenosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP3 \"purine nucleoside phosphorylase Guanosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP4 \"purine nucleoside phosphorylase Deoxyguanosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP5 \"purine nucleoside phosphorylase Inosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP6 \"purine nucleoside phosphorylase Deoxyinosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PUNP7 \"purine nucleoside phosphorylase Xanthosine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYAM5PO \"pyridoxamine 5 phosphate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDAMK \"pyridoxamine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXK \"pyridoxal kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXNK \"pyridoxine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXPP \"Pyridoxal 5 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYK \"pyruvate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYNP2r \"pyrimidine nucleoside phosphorylase uracil \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYRt2rpp \"pyruvate reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYRtex \"pyruvate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_QMO2 \"quinol monooxygenase Ubiquinol 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_QMO3 \"quinol monooxygenase menaquinol 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_QULNS \"quinolinate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_R5PP \"ribose 5 phosphate phosphatase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_R5PPpp \"ribose 5 phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_R5Ptex \"Ribose 5 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBFK \"riboflavin kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBFSa \"riboflavin synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBFSb \"riboflavin synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBK \"ribokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBK_L1 \"L ribulokinase L ribulose \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RBP4E \"L ribulose phosphate 4 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RHAT1 \"rhamnosyltransferase I LPS core biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RHCCE \"S ribosylhomocysteine cleavage enzyme\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RIBabcpp \"D ribose transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RIBtex \"ribose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RMI \"L rhamnose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RMK \"rhamnulokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RMNtex \"L rhamnose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RMNtpp \"L rhamnose transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RMPA \"Rhamnulose 1 phosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR1 \"ribonucleoside diphosphate reductase ADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR1b \"ribonucleoside diphosphate reductase ADP  glutaredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR2 \"ribonucleoside diphosphate reductase GDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR2b \"ribonucleoside diphosphate reductase GDP  glutaredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR3 \"ribonucleoside diphosphate reductase CDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR3b \"ribonucleoside diphosphate reductase CDP  glutaredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR4 \"ribonucleoside diphosphate reductase UDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNDR4b \"ribonucleoside diphosphate reductase UDP  glutaredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNTR1c \"ribonucleoside triphosphate reductase ATP  flavodoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNTR2c \"ribonucleoside triphosphate reductase GTP  flavodoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNTR3c \"ribonucleoside triphosphate reductase CTP  flavodoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNTR4c \"ribonucleoside triphosphate reductase UTP  flavodoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RPE \"ribulose 5 phosphate 3 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RPI \"ribose 5 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_S7PI \"sedoheptulose 7 phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SADH \"Succinylarginine dihydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SADT2 \"Sulfate adenyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SBTPD \"sorbitol 6 phosphate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SBTptspp \"D sorbitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SBTtex \"D sorbitol transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SDPDS \"succinyl diaminopimelate desuccinylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SDPTA \"succinyldiaminopimelate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SELCYSS \"selenocysteine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SELNPS \"Selenophosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERASr \" L seryl adenylate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERAT \"serine O acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERD_D \"D serine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERTRS \"Seryl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERTRS2 \"Seryl tRNA synthetase selenocystein \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERt2rpp \"L serine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERt4pp \"L serine via sodium symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERtex \"L serine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SFGTHi \"S Formylglutathione hydralase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SGDS \"Succinylglutamate desuccinylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SGSAD \"Succinylglutamic semialdehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHCHCS2 \"2 succinyl 6 hydroxy 2 4 cyclohexadiene 1 carboxylate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHCHD2 \"sirohydrochlorin dehydrogenase NAD \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHCHF \"sirohydrochlorin ferrochetalase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHK3Dr \"shikimate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHKK \"shikimate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SKMtex \"shikimate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SO2tex \"SO2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SO2tpp \"SO2 transport via diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SO3tex \"sulfite transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SO4tex \"sulfate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SOTA \"Succinylornithine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPMDAT1 \"Spermidine acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPMDAT2 \"Spermidine acetyltransferase N8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPMDabcpp \"spermidine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPMDtex \"spermidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPMS \"spermidine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPODM \"superoxide dismutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SPODMpp \"superoxide dismutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SSALx \"succinate semialdehyde dehydrogenase NAD \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SSALy \"succinate semialdehyde dehydrogenase NADP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCBZL \"o succinylbenzoate CoA ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCBZS \"O succinylbenzoate CoA synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCCt2_2pp \"succinate transport via proton symport 2 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCCt3pp \"succinate transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCCtex \"succinate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCDi \"succinate dehydrogenase irreversible \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCOAS \"succinyl CoA synthetase ADP forming \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCRtex \"sucrose transport transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SULFACtex \"sulfoaceate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SULRi \"sulfite reductase NADPH2 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SULabcpp \"sulfate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_T2DECAI \"trans 2 decenoyl ACP isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TALA \"transaldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TARTRtex \"Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TAURtex \"taurine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TCYNTtex \"Thiocyanate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDECOAI \"tetradecenoyl coa cis trans isomerization\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDP \"thiamin pyrophosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDPADGAT \"dTDP 4 amino 4 6 dideoxy D glucose acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDPAGTA \"dTDP 4 amino 4 6 dideoxy D glucose transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDPDRE \"dTDP 4 dehydrorhamnose 3 5 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDPDRR \"dTDP 4 dehydrorhamnose reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDPGDH \"dTDPglucose 4 6 dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDSK \"Tetraacyldisaccharide 4 kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDSR1 \"thioldisulfide reductase DsbC \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TDSR2 \"thioldisulfide reductase DsbG \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THD2pp \"NAD P transhydrogenase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THDPS \"tetrahydrodipicolinate succinylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THIORDXi \"hydrogen peroxide reductase thioredoxin \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THMDt2pp \"thymidine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THMDt2rpp \"thymidine transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THMDtex \"thymidine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THMabcpp \"thiamine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THMtex \"Thiamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRA2i \"L allo Threonine Aldolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRAi \"Threonine aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRD \"L threonine dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRD_L \"L threonine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRPtex \"phospho L threonine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRS \"threonine synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRTRS \"Threonyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRabcpp \"L threonine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRt2pp \"L threonine efflux transport via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRt2rpp \"L threonine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRt4pp \"L threonine via sodium symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRtex \"L threonine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THYMt3pp \"thymine transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THYMtex \"thymine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TKT1 \"transketolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TKT2 \"transketolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMAOR1pp \"Trimethylamine N oxide reductase menaquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMAOR2pp \"Trimethylamine N oxide reductase demethylmenaquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMAOtex \"Trimethylamine N oxide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMAtex \"Trimethylamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMDK1 \"thymidine kinase ATPthymidine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMDPP \"thymidine phosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMDS \"thymidylate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMK \"thiamine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMPK \"thiamine phosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TMPPP \"thiamine phosphate diphosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TPI \"triose phosphate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TPRDCOAS \"triphosphoribosyl dephospho CoA synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRDR \"thioredoxin reductase NADPH \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRE6PH \"trehalose 6 phosphate hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRE6PP \"trehalose phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRE6PS \"alpha alpha trehalose phosphate synthase UDP forming \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TREH \"alpha alpha trehalase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TREHpp \"alpha alpha trehalase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TREptspp \"trehalose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TREtex \"trehalose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPS1 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPS2 \"tryptophan synthase indole \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPS3 \"tryptophan synthase indoleglycerol phosphate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPTRS \"Tryptophanyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPt2rpp \"L tryptophan reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRPtex \"L tryptophan transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TRSARr \"tartronate semialdehyde reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TSULabcpp \"thiosulfate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TSULtex \"thiosulfate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTDCAtexi \"Tetradecanoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTDCEAtexi \"Tetradecenoate transport via facilitated irreversible diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TUNGSabcpp \"tungstate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TUNGStex \"tungstate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYMtex \"tyramine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRPpp \"phospho L tyrosine phosphatase periplasmic \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRPtex \"phopho L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRTA \"tyrosine transaminase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRTRS \"tyrosyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRt2rpp \"L tyrosine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TYRtex \"L tyrosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_U23GAAT \"UDP 3 O 3 hydroxymyristoyl glucosamine acyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAAGDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimelate synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UACGALPpp \"UDP N acetyl D galactosamine pyrophosphohydrolase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UACGAMPpp \"UDP N acetyl D glucosamine pyrophosphohydrolase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UACGAMtex \"UDP N acetyl D glucosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UACMAMO \"UDP N acetyl D mannosamine oxidoreductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAG2E \"UDP N acetylglucosamine 2 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAGAAT \"UDP N acetylglucosamine acyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAGCVT \"UDP N acetylglucosamine 1 carboxyvinyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAGDP \"UDP N acetylglucosamine diphosphorylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAGPT3 \"UDP N acetylglucosamine N acetylmuramyl pentapeptide pyrophosphoryl undecaprenol N acetylglucosamine transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAMAGS \"UDP N acetylmuramoyl L alanyl D glutamate synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAMAS \"UDP N acetylmuramoyl L alanine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UAPGR \"UDP N acetylenolpyruvoylglucosamine reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPDP \"undecaprenyl diphosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPDPS \"Undecaprenyl diphosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPDPpp \"undecaprenyl diphosphatase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPPtppi \"undecaprenyl phosphate transport cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPACGALtex \"UDP N acetyl D galactosamine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPG4E \"UDPglucose 4 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGALPpp \"UDPgalactose pyrophosphohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGALtex \"UDPgalactose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGD \"UDPglucose 6 dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGDC \"UDP glucuronate C 4  decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGLCURtex \"UDP D glucuronate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGPpp \"UDPglucose pyrophosphohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGtex \"UDPglucose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPKAAT \"UDP 4  ketopentoseUDP 4 amino 4 deoxy L arabinose aminotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UGLCURPpp \"UDP D glucuronate pyrophosphohydrolase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UGLT \"UDPglucose hexose 1 phosphate uridylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UGLYCH \"Ureidoglycolate hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UGMDDS \"UDP N acetylmuramoyl L alanyl D glutamyl meso 2 6 diaminopimeloyl D alanyl D alanine synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UHGADA \"UDP 3 O acetylglucosamine deacetylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ULA4NFT \"UDP L Ara4N formyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ULA4Ntppi \"transport cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UM3PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UM4PCP \"UDP N acetylmuramoyl L alanyl D gamma glutamyl meso 2 6 diaminopimelate D alanine L D carboxypeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UM4PL \"UDP N acetylmuramateL alanyl gamma D glutamyl meso diaminopimelate D alanine ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UMPK \"UMP kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UMPtex \"UMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UNK3 \"2 keto 4 methylthiobutyrate transamination\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPLA4FNF \"undecaprenyl phosphate L Ara4FN formylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPLA4FNT \"undecaprenyl phosphate L Ara4FN transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPP3MT \"uroporphyrinogen methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPP3S \"uroporphyrinogen III synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPPRT \"uracil phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URAt2pp \"uracil transport in via proton symport periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URAtex \"uracil transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URDGLYCD \"ureidoglycolate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UREAtex \"Urea transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UREAtpp \"Urea transport via facilitate diffusion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIC \"uricase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIDK2r \"uridylate kinase dUMP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIH \"Uridine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIK2 \"uridine kinase GTPUridine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIt2pp \"uridine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URIt2rpp \"uridine transport in via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_URItex \"uridine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_USHD \"UDP sugar hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VALTA \"valine transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VALTRS \"Valyl tRNA synthetase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VALabcpp \"L valine transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VALt2rpp \"L valine reversible transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VALtex \"L valine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_VPAMT \"Valine pyruvate aminotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_X5PL3E \"L xylulose 5 phosphate 3 epimerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XANt2pp \"xanthine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XANtex \"xanthine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XANtpp \"xanthine reversible transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XMPtex \"XMP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XPPT \"xanthine phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XTSNH \"Xanthosine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XTSNt2rpp \"Xanthosine transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XTSNtex \"xanthosine transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLI1 \"xylose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLI2 \"xylose isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLK \"xylulokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLK2 \"L xylulokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLUt2pp \"L xylulose transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLUtex \"L xylulose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLtex \"D xylose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_XYLt2pp \"D xylose transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ZN2abcpp \"Zinc Zn2 ABC transporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ZN2t3pp \"zinc Zn2 transport out via proton antiport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ZN2tpp \"zinc transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ZNabcpp \"zinc Zn2 transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Zn2tex \"zinc Zn2 transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GCALDD \"Glycolaldehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THZPSN \"thiazole phosphate synthesis\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_AEP_e \"AEP exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AEPtex \"AEP transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AEPabcpp \"AEP transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AEPPYRTA \"2 aminoethylphosphonate pyruvate transaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PALDH \"phosphonoacetaldehyde hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_4hoxpac_e \"4 hydroxyphenylacetate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4hoxpactex \"4 hydroxyphenylacetate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HOXPACt2pp \"4 hydroxyphenylacetate transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FLAVNADR \"Flavin NAD P H reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HOXPACMON \"4 hydroxyphenylacetate 3 monooxygenase nadh\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HOXPACMOF \"4 hydroxyphenylacetate 3 monooxygenase FADH2\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_34DHPACDO \"3 4 dihydroxyphenylacetate 2 3 dioxygenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4C2HM6SADH \"4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5CM2HMUDI \"5 carboxymethyl 2 hydroxymuconate delta isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_5C2O3EDDC \"5 carboxy 2 oxohept 3 enedioate decarboxylation\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2HH24DDH \"2hh24dd hydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4H2KPILY \"4h2kpi Lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDS2tpp \" S Propane 1 2 diol facilitated transport 2 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDRDH \" R Propane 1 2 diol dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12PPDSDH \" S Propane 1 2 diol dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALCDPPAL \"alcohol dehydrogenase Propanal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COAPPALDH \"CoA dependent Propanal dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DSCLCOCH \"Sirohydrochlorin cobaltochelatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Cobalt2abcppI \"cobalt II transport via ABC system periplasm I\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_Cobalt2abcppII \"cobalt II transport via ABC system periplasm II\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL2MT \"Cobalt precorrin 2 methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL3MT \"Cobalt precorrin 3 C17 methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL4MT \"Cobalt precorrin 4 methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL5DA \"Cobalt precorrin 5a deacetylation\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL5BMT \"Cobalt precorrin 5b methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL6ARED \"Cobalt precorrin 6a reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL6BMT \"Cobalt precorrin 6b methyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL7MTDC \"Cobalt precorrin 7 methyltransferase decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CODSCL8XI \"Cobalt precorrin 8x isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COBNAD \"Cobyrinate amidation\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COB2NDARED \"cob II yrinate a c diamide reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COB1NDAAT1 \"cob I yrinate a c diamide adenosyltransferase 1\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_COB1NDAAT2 \"cob I yrinate a c diamide adenosyltransferase 2\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADCOBNSYN \"adenosylcobyric acid synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LTHRK \"L threonine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_THRPDC \"L threonine phosphate decarboxylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBIPS \"Adenosyl cobinamide phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBLPS \"Adenosylcobalamin phosphate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBLPP \"Adenosylcobalamin phosphate phosphatase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ADOCBIK \"Adenosyl cobinamide kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBLAT \"cob I alamin adenosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_APPK \"1 amino 2 propanol kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_remnant1_e \"residual atoms of reaction DMBZIDSYN exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_REMNANT1tex \"residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_colipa20Oag_e \"O antigen x20 core oligosaccharide lipid A exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_colipa20Oagtex \"O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_udcdp20OagLpp \"O antigen x20 ligase periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_udcdpgalrmnmanabetpp \"Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OGLT \"galactosyltransferase LPS O antigen biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ORLT \"rhamnosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OMLT \"mannosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OALT \"abequosyl transferase LPS O antigen biosynthesis \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MAN1PT2 \"mannose 1 phosphate guanylyltransferase GDP \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PMANM \"phosphomannomutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP1pp \"O antigen polymerase 1 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP2pp \"O antigen polymerase 2 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP3pp \"O antigen polymerase 3 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP4pp \"O antigen polymerase 4 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP5pp \"O antigen polymerase 5 periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP6pp \"O antigen polymerase 6 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP7pp \"O antigen polymerase 7 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP8pp \"O antigen polymerase 8 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP9pp \"O antigen polymerase 9 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP10pp \"O antigen polymerase 10 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP11pp \"O antigen polymerase 11 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP12pp \"O antigen polymerase 12 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP13pp \"O antigen polymerase 13 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP14pp \"O antigen polymerase 14 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP15pp \"O antigen polymerase 15 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP16pp \"O antigen polymerase 16 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP17pp \"O antigen polymerase 17 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP18pp \"O antigen polymerase 18 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAP19pp \"O antigen polymerase 19 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_G1PCT \"glucose 1 phosphate cytidylyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDPGLC46DH \"CDP glucose 4 6 dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDP4D6DGLCRx \"CDP 4 dehydro 6 deoxyglucose reductase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CDPABEQS \"CDP abequose synthase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FEexs \"Salmochelin S4 Fe III binding spontaneous \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_SALCHS4_e \"Salmochelin S4 exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_SALCHS4FE_e \"Salmochelin S4 Fe III exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FEabcpp \"Salmochelin S4 Fe III transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4tex \"Salmochelin S4 transport secretion periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4abcpp \"Salmochelin S4 transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTER2tpp \"enterochelin transport2 via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_SALCHSX_e \"Salmochelin SX exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHSXtex \"Salmochelin SX via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHSXtpp \"Salmochelin SX facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CSNt2pp \"cytosine transport in via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CSND \"Cytosine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALCD19 \"alcohol dehydrogenase glycerol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALCD2x \"alcohol dehydrogenase ethanol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FALDH2 \"formaldehyde dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DPR \"2 dehydropantoate 2 reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LIPAHT2ex \"core oligosaccharide lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LIPAHTex \"Lipid Ahexadecanoate transferase n C160  extracellular membrane \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTBD2pp \"cytochrome oxidase bd menaquinol 8 2 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYTBDpp \"cytochrome oxidase bd ubiquinol 8 2 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACANTHAT \"acetyl CoAanthranilate acetyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLTPD \"Galactitol 1 phosphate dehydrogenase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TGBPA \"Tagatose bisphosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUI1 \"glucuronate isomerase D glucuronate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GUI2 \"glucuronate isomerase D galacturonate \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MNNH \"D mannonate hydrolyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MANAO \"Mannonate oxidoreductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAADCS \"oxaloacetate decarboxylase sodium pump\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITt4pp \"Citrate transport via sodium symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDGLCNt2rpp \"2 dehydro 3 deoxy D gluconate transport via proton symport reversible periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITt2pp \"Citrate proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CITtupp \"Citrate transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ICITtupp \"Isocitrate transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ACONCtupp \"Cisaconitate transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NI2uabcpp \"nickel transport via ABC system uptake periplasm \">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALTptspp \"Galactitol transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tag__D_e \"D Tagatose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TAGtex \"D Tagatose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TAGptspp \"D Tagatose transport via PEPPyr PTS periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TAG1PK \"D Tagatose 1 phosphate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE2abcpp \"iron II transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MN2abcpp \"Manganese Mn2 transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TETDHpp1 \"Tetrathionate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TSULDHpp1 \"Thiosulfate Dehydrogenase menaquinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TETDHpp2 \"Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TSULDHpp2 \"Thiosulfate Dehydrogenase Demethylmenaquinol 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TETDHpp3 \"Tetrathionate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TSULDHpp3 \"Thiosulfate Dehydrogenase ubiquinone 8  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SO3R \"Sulfite reductase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MG2uabcpp \"Magnesium Mg2 ABC transporter ubtake periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPPDC1 \"uroporphyrinogen decarboxylase uroporphyrinogen III \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AIRSK \"Aminoimidazole riboside kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_airs_e \"Aminoimidazole riboside exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AIRStex \"Aminoimidazole riboside transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AIRStpp \"Aminoimidazole riboside facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_REMNANT1tpp \"residual atoms of reaction DMBZIDSYN facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ARGDA \"Arginine deiminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCBT \"ornithine carbamoyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CBMKr \"Carbamate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3PGt6pp \"3 Phospho D glycerate phosphate antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2PGt6pp \"D Glycerate 2 phosphate phosphate antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PEPt6pp \"Phosphoenolpyruvate phosphate antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_pep_e \"Phosphoenolpyruvate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PEPtex \"Phosphoenolpyruvate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_2pg_e \"D Glycerate 2 phosphate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2PGtex \"D Glycerate 2 phosphate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_3pg_e \"3 Phospho D glycerate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_3PGtex \"3 Phospho D glycerate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SERD_L \"L serine deaminase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TARTD \"L  tartrate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TARTRtpp \"Tartrate facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NI2tpp \"nickel 2 transport in via permease no H \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CAT \"catalase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHORM \"chorismate mutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DAPAL \"2 3 diaminopropionate amonnia lyase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDPGALM \"UDPgalactopyranose mutase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYD1pp \"hydrogenase ubiquinone 8 2 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYD2pp \"Hydrogenase menaquinone8 2 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HYD3pp \"Hydrogenase Demethylmenaquinone 8 2 protons  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tet_e \"Tetrathionate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TETtex \"Tetrathionate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_foam_e \"Formamide exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FOAMtex \"Formamide transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tartr__D_e \"D tartrate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TARTRDtex \"D Tartrate transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TARTRDtpp \"D Tartrate facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTD \"galactarate dehydratase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SHSL1 \"O succinylhomoserine lyase L cysteine \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ASPt2_3pp \"L asparate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCFUMtpp \"succinatefumarate antiporter periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SUCCt2_3pp \"Succintate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FUMt2_3pp \"Fumarate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MALt2_3pp \"Malate transport via proton symport 3 H  periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALAALAD \"D alanine D alanine dipeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMSOR1 \"Dimethyl sulfoxide reductase Menaquinol 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMSOR2 \"Dimethyl sulfoxide reductase Demethylmenaquinol 8 \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NAt3pp \"sodium transport out via proton antiport cytoplasm to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4IZ5PPH \"4 Imidazolone 5 propanoate propionase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NFLGLNH \"N Formimino L glutamate formiminohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_4abz_e \"4 Aminobenzoate exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ABZtex \"4 aminobenzoate extracellular to cytosol \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxB_e \"Ferrioxamine B exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxBfe_e \"Ferrioxamine B fe exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxE_e \"Ferrioxamine E exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxEfe_e \"Ferrioxamine E fe exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxG_e \"Ferrioxamine G exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_feroxGfe_e \"Ferrioxamine G fe exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBFEabcpp \"Ferrioxamine B fe transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEFEabcpp \"Ferrioxamine E fe transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGFEabcpp \"Ferrioxamine G fe transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGFEtonex \"Ferrioxamine G fe transport via ton system extermal \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBFEtex \"Ferrioxamine B fe transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEFEtex \"Ferrioxamine E fe transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGtex \"Ferrioxamine G transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEtex \"Ferrioxamine E transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBtex \"Ferrioxamine B transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBtpp \"Ferrioxamine B facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEtpp \"Ferrioxamine E facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGtpp \"Ferrioxamine G facilitated transport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_drib_e \"deoxy D Ribose exchange\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DRIBtpp \"deoxy D ribose transport via proton symport periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DRBK \"deoxyribokinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DRIBtex \"deoxyribose transport via diffusion extracellular to periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SCYSSL \"S-sulfo-L-cysteine sulfite lyase \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SLCYSS \"O-acetyl-L-serine sulfhydrylase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GSHPO \"glutathione peroxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HHDDI \"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INOSR \"Ketoinositol reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MMSAD3 \"methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHITPH \"chitobiose-6-phosphate hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_D5KGK \"2-Deoxy-5-Keto-D-gluconate kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_D5KGPA \"2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHEDAA \"2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DKDID \"D-2,3-Diketo 4-deoxy-epi-inositol dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2INSD \"2-Inosose dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DTARTD \"D-tartrate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NMNR \"nmn hydrolysis\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNMK \"ribosylnicotinamide kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OACT \"O-antigen Acetyl-Transferase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPAT \"Abequosyl transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPMT \"mannosyl transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPRT \"rhamnosyl transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UDCPGT \"undecaprenol-phosphate galactosephosphotransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TCBO \"Tricarballylate oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYBt6ex \"betaine (glycine betaine) transport into periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GLYBt6pp \"betaine (glycine betaine) transport in/out via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHITOBex \"Chitobiose transport into periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CHITOBpts \"Chitobiose transport via PTS\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNAMtex \"Nicotinamide riboside transport into periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_RNAMtpp \"Nicotinamide riboside transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAO5t3ex \"O-antigen unit (O5) translocase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAO5t3pp \"O-antigen unit (O5) translocase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TCBt2pp \"tricarballylate transport in via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TCBt2ex \"tricarballylate transport into periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTONR1pp \"Trithionate Reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTONtex \"Trithionate transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTONR2pp \"Trithionate Reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_LEUt4rpp \"L-leucine transport in via sodium symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UPLA4NT \"Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PSUDS \"Pseudouridylate synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PFOR \"Pyruvate flavodoxin oxidoreductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_NNDMBRT \"Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_biomass_iRR1083 \"biomass equation from http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_peptido_ST \"peptido_ST formation reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_pe2_ST \"membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_pg2_ST \"membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_clpn2_ST \"membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_pa2_ST \"membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ps2_ST \"membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_12dgr2_ST \"membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAL_ST \"O-antigen ligase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OA4L_ST \"O-antigen 4 polymerase with long chain\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OA5L_ST \"O-antigen 5 polymerase with long chain\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OA4VL_ST \"O-antigen 4 polymerase with very long chain\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OA5VL_ST \"O-antigen 5 polymerase with very long chain\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAO4t3pp \"O-antigen translocase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OAO4t3ex \"O-antigen translocase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXtex \"Pyridoxal transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXtpp \"Pyridoxal transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXNtex \"Pyrdoxine transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PYDXNtpp \"Pyrdoxine transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HEXt2rpp \"hexanoate transport via proton symport, reversible (periplasm)\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HTHRtex \"4-hydroxy-L-threonine transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HTHRtrpp \"4-hydroxy-L-threonine transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_4HTHRK \"4-Hydroxy-L-threonine kinase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_35PDE \"3,5-cAMP Phosphodiesterase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_UROCANH \"urocanate hydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AADDFT \"4-alpha-L-fucosyltransferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTERHpp \"enterobactin hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4Hpp \"salmochelin s4 hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FEHpp \"salmochelin s4 fe3 hydrolase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBSZ3tex \"23dhbsz secretion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBSZ3FEexs \"23dhbsz3 Fe III sequestration\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBSZ3FEtonex \"23dhbsz3  Fe III import\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBSZ3FEabcpp \"23dhbsz3 Fe III transport via ABC system periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEDHBZS3R1 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEDHBZS3R2 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEDHBZS3R3 \"fe3dhbzs3 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2tex \"Salmochelin s2 secretion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FEexs \"Salmochelin s2 Fe III sequestration\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FEtonex \"Salmochelin s2 Fe III import\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FEabcpp \"Salmochelin s2 Fe III transport via ABC system periplasm\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FER1 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FER2 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2FER3 \"salmochelin s2 Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS2H \"Salmochelin s2 hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS1H \"Salmochelin s1 hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTERH \"enterobactin hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBZS3H \"23DHBS polymer hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBZS2H \"23DHBS polymer hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTERtex \"Enterobactin secretion\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTERGLCT1 \"Glycosyl transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ENTERGLCT2 \"Glycosyl transferase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXBFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXEFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGFER1 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGFER2 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEROXGFER3 \"Ferrioxamine Fe III reduction and offloading\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GULNLtex \"L-gulonate transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GULNLtpp \"L-gulonate transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GULNLR \"L-gulonate reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DXYLUDtex \"1-deoxy-d-xyluose transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DXYLUDtpp \"1-deoxy-d-xyluose transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_MUREINLPPTP \"L,D-transpeptidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_APOLPPS \"lpp signal peptidase - murein\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROLPPOATPE160 \"O-acyl Transferase - murein\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROLPPOATPG160 \"O-acyl Transferase - murein\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_PROLPPGT160 \"Glyceryl Transferase - murein\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DMBZIDS \"DMB synthase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_2HH24DDH1 \"2hh24dd hydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_GALCTND \"galactonate dehydratase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDPGALA \"2-dehydro-3-deoxy-6-phosphogalactonate aldolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FOAMtrpp \"Formamide transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERR1 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERR2 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEENTERR3 \"Fe enterobactin reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FER1 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FER2 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FER3 \"Salmochelin S4 Fe III reduction Fe III unloading \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SALCHS4FEtonex \"Salmochelin S4 Fe III transport via ton system extracellular \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HISNH4L \"Histidine ammonia lyase\">\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_AB6PGH \"Arbutin 6 phosphate glucohydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_SARCOX \"sarcosine oxidase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FE3HOXabcpp \"ferric hydroxamate transport via ABC system periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMR1 \"ferroxamine reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMR2 \"ferroxamine reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_FEOXAMR3 \"ferroxamine reductase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DHBSH \"2 3 dihydroxybenzoylserine hydrolase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALPATE160pp \"apolipoprotein N acyltransferase phosphatidylethanolamine periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_ALPATG160pp \"apolipoprotein N acyltransferase phosphatidylglycerol periplasm \">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_CYSLDS \"L-cysteine desulfhydrase\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_INOSTtpp \"myo-inositol transport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_HDCAt2pp \"Hexadecanoate transport via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCDCAt2pp \"Octadecanoate transport via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_OCDCEAt2pp \"Octadecenoate transport via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_TTDCAt2pp \"Tetradecanoate transport via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_DDCAt2pp \"Dodecanoate transport via proton symport\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_biomass_iRR1083_metals \"biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_dxyl_e \"dxyl_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_salchs2fe_e \"salchs2fe_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_rnam_e \"rnam_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_colipaOA_e \"colipaOA_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udcpo4_e \"udcpo4_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tcb_e \"tcb_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_fe3dhbzs3_e \"fe3dhbzs3_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_23dhbzs3_e \"23dhbzs3_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_guln__L_e \"guln__L_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_udcpo5_e \"udcpo5_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_4hthr_e \"4hthr_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_salchs2_e \"salchs2_e Boundary Reaction\">\n",
+      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: <Reaction R_EX_tton_e \"tton_e Boundary Reaction\">\n"
+     ]
+    }
+   ],
    "source": [
-    "salmonella = cobra.test.create_test_model('salmonella')\n",
+    "salmonella = load_model('salmonella')\n",
     "nominal = salmonella.optimize()\n",
     "loopless = loopless_solution(salmonella)"
    ]
@@ -79,11 +13022,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "import pandas\n",
@@ -93,16 +13032,12 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "<matplotlib.axes._subplots.AxesSubplot at 0x10f7cb3c8>"
+       "<AxesSubplot:xlabel='loopless', ylabel='nominal'>"
       ]
      },
      "execution_count": 4,
@@ -111,13 +13046,15 @@
     },
     {
      "data": {
-      "application/pdf": 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3oPwRf76yb56STBQICqqV+1CIBj39uCZKVar19MPT05dPS4vh9M+nv9ZHO3t2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\nMDAwMDAgbiAKMDAwMDAxMzgzNyAwMDA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\n",
+      "image/png": "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\n",
       "text/plain": [
-       "<matplotlib.figure.Figure at 0x103f18198>"
+       "<Figure size 432x288 with 1 Axes>"
       ]
      },
-     "metadata": {},
+     "metadata": {
+      "needs_background": "light"
+     },
      "output_type": "display_data"
     }
    ],
@@ -127,30 +13064,21 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "This functionality can also be used in FVA by using the `loopless=True` argument to avoid getting high flux ranges for reactions that essentially only can reach high fluxes if they are allowed to participate in loops (see the simulation notebook) leading to much narrower flux ranges."
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Loopless model"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Cobrapy also includes the \"classical\" loopless formulation by [Schellenberger et. al.](https://dx.doi.org/10.1016%2Fj.bpj.2010.12.3707) implemented in `cobra.flux_analysis.add_loopless` modify the model with additional mixed-integer constraints that make thermodynamically infeasible loops impossible. This is much slower than the strategy provided above and should only be used if one of the two following cases applies:\n",
     "\n",
@@ -164,21 +13092,20 @@
    "cell_type": "code",
    "execution_count": 5,
    "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true,
     "scrolled": true
    },
    "outputs": [
     {
      "data": {
-      "application/pdf": 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evQd2HGYC86Q1LIMZ6wM/Ywo3enF4TMbZ7XUZNQR712tPZlAyKxdxycQFU3XYyJnDT6aM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\n",
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\n",
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\n",
       "text/plain": [
-       "<matplotlib.figure.Figure at 0x104bd52e8>"
+       "<Figure size 756x324 with 1 Axes>"
       ]
      },
-     "metadata": {},
+     "metadata": {
+      "needs_background": "light"
+     },
      "output_type": "display_data"
     }
    ],
@@ -189,11 +13116,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "model = Model()\n",
@@ -212,10 +13135,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "While this model contains a loop, a flux state exists which has no flux through reaction v$_3$, and is identified by loopless FBA."
    ]
@@ -223,11 +13143,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -248,10 +13164,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "If there is no forced flux through a loopless reaction, parsimonious FBA will also have no flux through the loop."
    ]
@@ -259,11 +13172,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -282,10 +13191,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "However, if flux is forced through v$_3$, then there is no longer a feasible loopless solution, but the parsimonious solution will still exist."
    ]
@@ -293,24 +13199,14 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "model is infeasible\n"
-     ]
-    },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "cobra/util/solver.py:398 \u001b[1;31mUserWarning\u001b[0m: solver status is 'infeasible'\n"
+      "/Users/uridavidakavia/PycharmProjects/cobrapy/src/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'.\n",
+      "  warn(f\"Solver status is '{status}'.\", UserWarning)\n"
      ]
     }
    ],
@@ -327,11 +13223,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -350,20 +13242,14 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Method"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "`loopless_solution` is based on a given reference flux distribution. It will look for a new flux distribution with the following requirements:\n",
     "\n",
@@ -394,7 +13280,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -408,9 +13294,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.2"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 0
+ "nbformat_minor": 1
 }
diff --git a/documentation_builder/media.ipynb b/documentation_builder/media.ipynb
index 2c83c892a..ceeef1087 100644
--- a/documentation_builder/media.ipynb
+++ b/documentation_builder/media.ipynb
@@ -18,6 +18,15 @@
    "execution_count": 1,
    "metadata": {},
    "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    },
     {
      "data": {
       "text/plain": [
@@ -36,9 +45,9 @@
     }
    ],
    "source": [
-    "from cobra.test import create_test_model\n",
+    "from cobra.io import load_model\n",
     "\n",
-    "model = create_test_model(\"textbook\")\n",
+    "model = load_model(\"textbook\")\n",
     "model.medium"
    ]
   },
@@ -211,7 +220,7 @@
     }
    ],
    "source": [
-    "model = create_test_model(\"textbook\")\n",
+    "model = load_model(\"textbook\")\n",
     "\n",
     "with model:\n",
     "    medium = model.medium\n",
@@ -282,9 +291,9 @@
     {
      "data": {
       "text/plain": [
-       "EX_glc__D_e    10.000000\n",
-       "EX_nh4_e        1.042503\n",
-       "EX_pi_e         0.703318\n",
+       "EX_glc__D_e    10.00000\n",
+       "EX_nh4_e        0.54528\n",
+       "EX_pi_e         0.36787\n",
        "dtype: float64"
       ]
      },
@@ -334,79 +343,107 @@
        "      <th>1</th>\n",
        "      <th>2</th>\n",
        "      <th>3</th>\n",
+       "      <th>4</th>\n",
+       "      <th>5</th>\n",
        "    </tr>\n",
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
        "      <th>EX_fru_e</th>\n",
        "      <td>0.000000</td>\n",
-       "      <td>521.357767</td>\n",
+       "      <td>308.82944</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>31.58596</td>\n",
        "      <td>0.000000</td>\n",
        "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_glc__D_e</th>\n",
        "      <td>0.000000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>308.82944</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>31.157104</td>\n",
        "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>519.750758</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_gln__L_e</th>\n",
        "      <td>0.000000</td>\n",
-       "      <td>40.698058</td>\n",
-       "      <td>18.848678</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>2.18112</td>\n",
        "      <td>0.000000</td>\n",
+       "      <td>18.848678</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_glu__L_e</th>\n",
-       "      <td>348.101944</td>\n",
-       "      <td>0.000000</td>\n",
+       "      <td>277.588056</td>\n",
+       "      <td>6.10840</td>\n",
+       "      <td>6.10840</td>\n",
+       "      <td>0.00000</td>\n",
        "      <td>0.000000</td>\n",
        "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_mal__L_e</th>\n",
        "      <td>0.000000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
        "      <td>0.000000</td>\n",
        "      <td>1000.000000</td>\n",
-       "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_nh4_e</th>\n",
        "      <td>0.000000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>4.362240</td>\n",
        "      <td>0.000000</td>\n",
-       "      <td>0.000000</td>\n",
-       "      <td>81.026921</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_o2_e</th>\n",
        "      <td>500.000000</td>\n",
-       "      <td>0.000000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
+       "      <td>0.00000</td>\n",
        "      <td>0.000000</td>\n",
        "      <td>0.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>EX_pi_e</th>\n",
-       "      <td>66.431529</td>\n",
-       "      <td>54.913419</td>\n",
+       "      <td>46.944976</td>\n",
+       "      <td>2.94296</td>\n",
+       "      <td>2.94296</td>\n",
+       "      <td>2.94296</td>\n",
+       "      <td>2.942960</td>\n",
        "      <td>12.583458</td>\n",
-       "      <td>54.664344</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
        "</div>"
       ],
       "text/plain": [
-       "                      0           1            2           3\n",
-       "EX_fru_e       0.000000  521.357767     0.000000    0.000000\n",
-       "EX_glc__D_e    0.000000    0.000000     0.000000  519.750758\n",
-       "EX_gln__L_e    0.000000   40.698058    18.848678    0.000000\n",
-       "EX_glu__L_e  348.101944    0.000000     0.000000    0.000000\n",
-       "EX_mal__L_e    0.000000    0.000000  1000.000000    0.000000\n",
-       "EX_nh4_e       0.000000    0.000000     0.000000   81.026921\n",
-       "EX_o2_e      500.000000    0.000000     0.000000    0.000000\n",
-       "EX_pi_e       66.431529   54.913419    12.583458   54.664344"
+       "                      0          1          2         3          4  \\\n",
+       "EX_fru_e       0.000000  308.82944    0.00000  31.58596   0.000000   \n",
+       "EX_glc__D_e    0.000000    0.00000  308.82944   0.00000  31.157104   \n",
+       "EX_gln__L_e    0.000000    0.00000    0.00000   2.18112   0.000000   \n",
+       "EX_glu__L_e  277.588056    6.10840    6.10840   0.00000   0.000000   \n",
+       "EX_mal__L_e    0.000000    0.00000    0.00000   0.00000   0.000000   \n",
+       "EX_nh4_e       0.000000    0.00000    0.00000   0.00000   4.362240   \n",
+       "EX_o2_e      500.000000    0.00000    0.00000   0.00000   0.000000   \n",
+       "EX_pi_e       46.944976    2.94296    2.94296   2.94296   2.942960   \n",
+       "\n",
+       "                       5  \n",
+       "EX_fru_e        0.000000  \n",
+       "EX_glc__D_e     0.000000  \n",
+       "EX_gln__L_e    18.848678  \n",
+       "EX_glu__L_e     0.000000  \n",
+       "EX_mal__L_e  1000.000000  \n",
+       "EX_nh4_e        0.000000  \n",
+       "EX_o2_e         0.000000  \n",
+       "EX_pi_e        12.583458  "
       ]
      },
      "execution_count": 9,
@@ -444,11 +481,11 @@
     {
      "data": {
       "text/plain": [
-       "[<Reaction EX_12ppd__R_e at 0x131b4a58d0>,\n",
-       " <Reaction EX_12ppd__S_e at 0x131b471c50>,\n",
-       " <Reaction EX_14glucan_e at 0x131b471e10>,\n",
-       " <Reaction EX_15dap_e at 0x131b471e48>,\n",
-       " <Reaction EX_23camp_e at 0x131b471f98>]"
+       "[<Reaction EX_12ppd__R_e at 0x7f88afe3dcf8>,\n",
+       " <Reaction EX_12ppd__S_e at 0x7f88afe7c240>,\n",
+       " <Reaction EX_14glucan_e at 0x7f88afe46240>,\n",
+       " <Reaction EX_15dap_e at 0x7f88afe46278>,\n",
+       " <Reaction EX_23camp_e at 0x7f88afe463c8>]"
       ]
      },
      "execution_count": 10,
@@ -457,7 +494,7 @@
     }
    ],
    "source": [
-    "ecoli = create_test_model(\"ecoli\")\n",
+    "ecoli = load_model(\"iJO1366\")\n",
     "ecoli.exchanges[0:5]"
    ]
   },
@@ -476,12 +513,12 @@
     {
      "data": {
       "text/plain": [
-       "[<Reaction DM_4CRSOL at 0x131b3162b0>,\n",
-       " <Reaction DM_5DRIB at 0x131b4712e8>,\n",
-       " <Reaction DM_AACALD at 0x131b471400>,\n",
-       " <Reaction DM_AMOB at 0x131b4714e0>,\n",
-       " <Reaction DM_MTHTHF at 0x131b4715f8>,\n",
-       " <Reaction DM_OXAM at 0x131b4716d8>]"
+       "[<Reaction DM_4crsol_c at 0x7f88afe3d208>,\n",
+       " <Reaction DM_5drib_c at 0x7f88afe3d2e8>,\n",
+       " <Reaction DM_aacald_c at 0x7f88afe3d400>,\n",
+       " <Reaction DM_amob_c at 0x7f88afe3d630>,\n",
+       " <Reaction DM_mththf_c at 0x7f88afe3d7b8>,\n",
+       " <Reaction DM_oxam_c at 0x7f88afe3d8d0>]"
       ]
      },
      "execution_count": 11,
@@ -535,16 +572,16 @@
     {
      "data": {
       "text/plain": [
-       "[<Reaction DM_4CRSOL at 0x131b3162b0>,\n",
-       " <Reaction DM_5DRIB at 0x131b4712e8>,\n",
-       " <Reaction DM_AACALD at 0x131b471400>,\n",
-       " <Reaction DM_AMOB at 0x131b4714e0>,\n",
-       " <Reaction DM_MTHTHF at 0x131b4715f8>,\n",
-       " <Reaction DM_OXAM at 0x131b4716d8>,\n",
-       " <Reaction EX_12ppd__R_e at 0x131b4a58d0>,\n",
-       " <Reaction EX_12ppd__S_e at 0x131b471c50>,\n",
-       " <Reaction EX_14glucan_e at 0x131b471e10>,\n",
-       " <Reaction EX_15dap_e at 0x131b471e48>]"
+       "[<Reaction DM_4crsol_c at 0x7f88afe3d208>,\n",
+       " <Reaction DM_5drib_c at 0x7f88afe3d2e8>,\n",
+       " <Reaction DM_aacald_c at 0x7f88afe3d400>,\n",
+       " <Reaction DM_amob_c at 0x7f88afe3d630>,\n",
+       " <Reaction DM_mththf_c at 0x7f88afe3d7b8>,\n",
+       " <Reaction DM_oxam_c at 0x7f88afe3d8d0>,\n",
+       " <Reaction EX_12ppd__R_e at 0x7f88afe3dcf8>,\n",
+       " <Reaction EX_12ppd__S_e at 0x7f88afe7c240>,\n",
+       " <Reaction EX_14glucan_e at 0x7f88afe46240>,\n",
+       " <Reaction EX_15dap_e at 0x7f88afe46278>]"
       ]
      },
      "execution_count": 13,
@@ -555,11 +592,18 @@
    "source": [
     "ecoli.boundary[0:10]"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -573,7 +617,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/phenotype_phase_plane.ipynb b/documentation_builder/phenotype_phase_plane.ipynb
index 406bb87e9..c9291d3fd 100644
--- a/documentation_builder/phenotype_phase_plane.ipynb
+++ b/documentation_builder/phenotype_phase_plane.ipynb
@@ -20,12 +20,22 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "import cobra.test\n",
+    "from cobra.io import load_model\n",
     "from cobra.flux_analysis import production_envelope\n",
     "\n",
-    "model = cobra.test.create_test_model(\"textbook\")"
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -71,12 +81,12 @@
        "    <tr style=\"text-align: right;\">\n",
        "      <th></th>\n",
        "      <th>carbon_source</th>\n",
-       "      <th>carbon_yield_maximum</th>\n",
+       "      <th>flux_minimum</th>\n",
        "      <th>carbon_yield_minimum</th>\n",
+       "      <th>mass_yield_minimum</th>\n",
        "      <th>flux_maximum</th>\n",
-       "      <th>flux_minimum</th>\n",
+       "      <th>carbon_yield_maximum</th>\n",
        "      <th>mass_yield_maximum</th>\n",
-       "      <th>mass_yield_minimum</th>\n",
        "      <th>EX_glc__D_e</th>\n",
        "      <th>EX_o2_e</th>\n",
        "    </tr>\n",
@@ -85,11 +95,11 @@
        "    <tr>\n",
        "      <th>0</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>1.442300e-13</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.000000</td>\n",
        "      <td>0.0</td>\n",
        "      <td>NaN</td>\n",
+       "      <td>0.000000</td>\n",
+       "      <td>5.692701e-14</td>\n",
        "      <td>NaN</td>\n",
        "      <td>-10.0</td>\n",
        "      <td>-60.000000</td>\n",
@@ -97,11 +107,11 @@
        "    <tr>\n",
        "      <th>1</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>1.310050e+00</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.072244</td>\n",
        "      <td>0.0</td>\n",
        "      <td>NaN</td>\n",
+       "      <td>0.072244</td>\n",
+       "      <td>1.310050e+00</td>\n",
        "      <td>NaN</td>\n",
        "      <td>-10.0</td>\n",
        "      <td>-56.842105</td>\n",
@@ -109,11 +119,11 @@
        "    <tr>\n",
        "      <th>2</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>2.620100e+00</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.144488</td>\n",
        "      <td>0.0</td>\n",
        "      <td>NaN</td>\n",
+       "      <td>0.144488</td>\n",
+       "      <td>2.620100e+00</td>\n",
        "      <td>NaN</td>\n",
        "      <td>-10.0</td>\n",
        "      <td>-53.684211</td>\n",
@@ -121,11 +131,11 @@
        "    <tr>\n",
        "      <th>3</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>3.930150e+00</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.216732</td>\n",
        "      <td>0.0</td>\n",
        "      <td>NaN</td>\n",
+       "      <td>0.216732</td>\n",
+       "      <td>3.930150e+00</td>\n",
        "      <td>NaN</td>\n",
        "      <td>-10.0</td>\n",
        "      <td>-50.526316</td>\n",
@@ -133,11 +143,11 @@
        "    <tr>\n",
        "      <th>4</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>5.240200e+00</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.288975</td>\n",
        "      <td>0.0</td>\n",
        "      <td>NaN</td>\n",
+       "      <td>0.288975</td>\n",
+       "      <td>5.240200e+00</td>\n",
        "      <td>NaN</td>\n",
        "      <td>-10.0</td>\n",
        "      <td>-47.368421</td>\n",
@@ -147,19 +157,19 @@
        "</div>"
       ],
       "text/plain": [
-       "  carbon_source  carbon_yield_maximum  carbon_yield_minimum  flux_maximum  \\\n",
-       "0   EX_glc__D_e          1.442300e-13                   0.0      0.000000   \n",
-       "1   EX_glc__D_e          1.310050e+00                   0.0      0.072244   \n",
-       "2   EX_glc__D_e          2.620100e+00                   0.0      0.144488   \n",
-       "3   EX_glc__D_e          3.930150e+00                   0.0      0.216732   \n",
-       "4   EX_glc__D_e          5.240200e+00                   0.0      0.288975   \n",
+       "  carbon_source  flux_minimum  carbon_yield_minimum  mass_yield_minimum  \\\n",
+       "0   EX_glc__D_e           0.0                   0.0                 NaN   \n",
+       "1   EX_glc__D_e           0.0                   0.0                 NaN   \n",
+       "2   EX_glc__D_e           0.0                   0.0                 NaN   \n",
+       "3   EX_glc__D_e           0.0                   0.0                 NaN   \n",
+       "4   EX_glc__D_e           0.0                   0.0                 NaN   \n",
        "\n",
-       "   flux_minimum  mass_yield_maximum  mass_yield_minimum  EX_glc__D_e  \\\n",
-       "0           0.0                 NaN                 NaN        -10.0   \n",
-       "1           0.0                 NaN                 NaN        -10.0   \n",
-       "2           0.0                 NaN                 NaN        -10.0   \n",
-       "3           0.0                 NaN                 NaN        -10.0   \n",
-       "4           0.0                 NaN                 NaN        -10.0   \n",
+       "   flux_maximum  carbon_yield_maximum  mass_yield_maximum  EX_glc__D_e  \\\n",
+       "0      0.000000          5.692701e-14                 NaN        -10.0   \n",
+       "1      0.072244          1.310050e+00                 NaN        -10.0   \n",
+       "2      0.144488          2.620100e+00                 NaN        -10.0   \n",
+       "3      0.216732          3.930150e+00                 NaN        -10.0   \n",
+       "4      0.288975          5.240200e+00                 NaN        -10.0   \n",
        "\n",
        "     EX_o2_e  \n",
        "0 -60.000000  \n",
@@ -222,12 +232,12 @@
        "    <tr style=\"text-align: right;\">\n",
        "      <th></th>\n",
        "      <th>carbon_source</th>\n",
-       "      <th>carbon_yield_maximum</th>\n",
+       "      <th>flux_minimum</th>\n",
        "      <th>carbon_yield_minimum</th>\n",
+       "      <th>mass_yield_minimum</th>\n",
        "      <th>flux_maximum</th>\n",
-       "      <th>flux_minimum</th>\n",
+       "      <th>carbon_yield_maximum</th>\n",
        "      <th>mass_yield_maximum</th>\n",
-       "      <th>mass_yield_minimum</th>\n",
        "      <th>EX_o2_e</th>\n",
        "    </tr>\n",
        "  </thead>\n",
@@ -235,56 +245,56 @@
        "    <tr>\n",
        "      <th>0</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>2.385536e-15</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>0.000000</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>2.345496e-15</td>\n",
        "      <td>0.0</td>\n",
+       "      <td>0.000000</td>\n",
+       "      <td>0.000000</td>\n",
+       "      <td>0.000000</td>\n",
        "      <td>-60.000000</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>1</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>5.263158e-02</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>1.578947</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>5.174819e-02</td>\n",
        "      <td>0.0</td>\n",
+       "      <td>1.578947</td>\n",
+       "      <td>0.052632</td>\n",
+       "      <td>0.051748</td>\n",
        "      <td>-56.842105</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>2</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>1.052632e-01</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>3.157895</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>1.034964e-01</td>\n",
        "      <td>0.0</td>\n",
+       "      <td>3.157895</td>\n",
+       "      <td>0.105263</td>\n",
+       "      <td>0.103496</td>\n",
        "      <td>-53.684211</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>3</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>1.578947e-01</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>4.736842</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>1.552446e-01</td>\n",
        "      <td>0.0</td>\n",
+       "      <td>4.736842</td>\n",
+       "      <td>0.157895</td>\n",
+       "      <td>0.155245</td>\n",
        "      <td>-50.526316</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>4</th>\n",
        "      <td>EX_glc__D_e</td>\n",
-       "      <td>2.105263e-01</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>6.315789</td>\n",
        "      <td>0.0</td>\n",
-       "      <td>2.069927e-01</td>\n",
        "      <td>0.0</td>\n",
+       "      <td>6.315789</td>\n",
+       "      <td>0.210526</td>\n",
+       "      <td>0.206993</td>\n",
        "      <td>-47.368421</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
@@ -292,19 +302,19 @@
        "</div>"
       ],
       "text/plain": [
-       "  carbon_source  carbon_yield_maximum  carbon_yield_minimum  flux_maximum  \\\n",
-       "0   EX_glc__D_e          2.385536e-15                   0.0      0.000000   \n",
-       "1   EX_glc__D_e          5.263158e-02                   0.0      1.578947   \n",
-       "2   EX_glc__D_e          1.052632e-01                   0.0      3.157895   \n",
-       "3   EX_glc__D_e          1.578947e-01                   0.0      4.736842   \n",
-       "4   EX_glc__D_e          2.105263e-01                   0.0      6.315789   \n",
+       "  carbon_source  flux_minimum  carbon_yield_minimum  mass_yield_minimum  \\\n",
+       "0   EX_glc__D_e           0.0                   0.0                 0.0   \n",
+       "1   EX_glc__D_e           0.0                   0.0                 0.0   \n",
+       "2   EX_glc__D_e           0.0                   0.0                 0.0   \n",
+       "3   EX_glc__D_e           0.0                   0.0                 0.0   \n",
+       "4   EX_glc__D_e           0.0                   0.0                 0.0   \n",
        "\n",
-       "   flux_minimum  mass_yield_maximum  mass_yield_minimum    EX_o2_e  \n",
-       "0           0.0        2.345496e-15                 0.0 -60.000000  \n",
-       "1           0.0        5.174819e-02                 0.0 -56.842105  \n",
-       "2           0.0        1.034964e-01                 0.0 -53.684211  \n",
-       "3           0.0        1.552446e-01                 0.0 -50.526316  \n",
-       "4           0.0        2.069927e-01                 0.0 -47.368421  "
+       "   flux_maximum  carbon_yield_maximum  mass_yield_maximum    EX_o2_e  \n",
+       "0      0.000000              0.000000            0.000000 -60.000000  \n",
+       "1      1.578947              0.052632            0.051748 -56.842105  \n",
+       "2      3.157895              0.105263            0.103496 -53.684211  \n",
+       "3      4.736842              0.157895            0.155245 -50.526316  \n",
+       "4      6.315789              0.210526            0.206993 -47.368421  "
       ]
      },
      "execution_count": 5,
@@ -332,12 +342,14 @@
    "outputs": [
     {
      "data": {
-      "image/png": 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t3AgR4d+r95bZPrXcld3k5hpe/mw7M9ceYPhdwbzWuwVuWuxKUce3Eo9FBvHJ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\nTkSuQmCC\n",
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\n",
       "text/plain": [
-       "<matplotlib.figure.Figure at 0x7f1db7b6c048>"
+       "<Figure size 432x288 with 1 Axes>"
       ]
      },
-     "metadata": {},
+     "metadata": {
+      "needs_background": "light"
+     },
      "output_type": "display_data"
     }
    ],
@@ -356,7 +368,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -370,7 +382,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.3"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/sampling.ipynb b/documentation_builder/sampling.ipynb
index dadc07048..07705f680 100644
--- a/documentation_builder/sampling.ipynb
+++ b/documentation_builder/sampling.ipynb
@@ -26,6 +26,15 @@
    "execution_count": 1,
    "metadata": {},
    "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    },
     {
      "data": {
       "text/html": [
@@ -72,124 +81,124 @@
        "  </thead>\n",
        "  <tbody>\n",
        "    <tr>\n",
-       "      <td>0</td>\n",
-       "      <td>-2.060626</td>\n",
-       "      <td>-0.766231</td>\n",
-       "      <td>-1.746726</td>\n",
-       "      <td>6.136642</td>\n",
-       "      <td>6.136642</td>\n",
-       "      <td>-1.746726</td>\n",
-       "      <td>13.915541</td>\n",
-       "      <td>2.174506</td>\n",
-       "      <td>-0.242290</td>\n",
-       "      <td>-1.294395</td>\n",
+       "      <th>0</th>\n",
+       "      <td>-0.771296</td>\n",
+       "      <td>-0.431093</td>\n",
+       "      <td>-2.284246</td>\n",
+       "      <td>6.735302</td>\n",
+       "      <td>6.735302</td>\n",
+       "      <td>-2.284246</td>\n",
+       "      <td>2.273930</td>\n",
+       "      <td>3.942050</td>\n",
+       "      <td>-1.589360</td>\n",
+       "      <td>-0.340203</td>\n",
        "      <td>...</td>\n",
-       "      <td>-6.117270</td>\n",
-       "      <td>33.457990</td>\n",
-       "      <td>34.319917</td>\n",
-       "      <td>704.483302</td>\n",
-       "      <td>-2.174506</td>\n",
-       "      <td>6.109618</td>\n",
-       "      <td>0.230408</td>\n",
-       "      <td>6.109618</td>\n",
-       "      <td>6.106540</td>\n",
-       "      <td>3.122076</td>\n",
+       "      <td>-2.314416</td>\n",
+       "      <td>6.997002</td>\n",
+       "      <td>8.082133</td>\n",
+       "      <td>335.977726</td>\n",
+       "      <td>-3.942050</td>\n",
+       "      <td>2.152983</td>\n",
+       "      <td>12.850348</td>\n",
+       "      <td>2.152983</td>\n",
+       "      <td>2.088065</td>\n",
+       "      <td>7.542984</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <td>1</td>\n",
-       "      <td>-1.518217</td>\n",
-       "      <td>-1.265778</td>\n",
-       "      <td>-0.253608</td>\n",
-       "      <td>9.081331</td>\n",
-       "      <td>9.081331</td>\n",
-       "      <td>-0.253608</td>\n",
-       "      <td>7.194475</td>\n",
-       "      <td>5.979050</td>\n",
-       "      <td>-0.225992</td>\n",
-       "      <td>-0.252439</td>\n",
+       "      <th>1</th>\n",
+       "      <td>-2.089680</td>\n",
+       "      <td>-1.099843</td>\n",
+       "      <td>-0.386453</td>\n",
+       "      <td>10.477790</td>\n",
+       "      <td>10.477790</td>\n",
+       "      <td>-0.386453</td>\n",
+       "      <td>3.396770</td>\n",
+       "      <td>3.163168</td>\n",
+       "      <td>-1.592767</td>\n",
+       "      <td>-0.989837</td>\n",
        "      <td>...</td>\n",
-       "      <td>-5.072733</td>\n",
-       "      <td>39.902893</td>\n",
-       "      <td>40.343192</td>\n",
-       "      <td>718.488475</td>\n",
-       "      <td>-5.979050</td>\n",
-       "      <td>4.991843</td>\n",
-       "      <td>0.137019</td>\n",
-       "      <td>4.991843</td>\n",
-       "      <td>4.959315</td>\n",
-       "      <td>4.172389</td>\n",
+       "      <td>-1.756359</td>\n",
+       "      <td>3.093051</td>\n",
+       "      <td>3.415053</td>\n",
+       "      <td>540.804734</td>\n",
+       "      <td>-3.163168</td>\n",
+       "      <td>1.657479</td>\n",
+       "      <td>56.649368</td>\n",
+       "      <td>1.657479</td>\n",
+       "      <td>1.617715</td>\n",
+       "      <td>8.029587</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <td>2</td>\n",
-       "      <td>-3.790368</td>\n",
-       "      <td>-1.292543</td>\n",
-       "      <td>-0.457502</td>\n",
-       "      <td>9.340755</td>\n",
-       "      <td>9.340755</td>\n",
-       "      <td>-0.457502</td>\n",
-       "      <td>23.435794</td>\n",
-       "      <td>1.652395</td>\n",
-       "      <td>-0.333891</td>\n",
-       "      <td>-2.497825</td>\n",
+       "      <th>2</th>\n",
+       "      <td>-1.108346</td>\n",
+       "      <td>-0.126460</td>\n",
+       "      <td>-1.198639</td>\n",
+       "      <td>5.057819</td>\n",
+       "      <td>5.057819</td>\n",
+       "      <td>-1.198639</td>\n",
+       "      <td>7.154043</td>\n",
+       "      <td>0.313155</td>\n",
+       "      <td>-0.227554</td>\n",
+       "      <td>-0.981886</td>\n",
        "      <td>...</td>\n",
-       "      <td>-0.674220</td>\n",
-       "      <td>0.153276</td>\n",
-       "      <td>1.506968</td>\n",
-       "      <td>844.889698</td>\n",
-       "      <td>-1.652395</td>\n",
-       "      <td>0.673601</td>\n",
-       "      <td>9.198001</td>\n",
-       "      <td>0.673601</td>\n",
-       "      <td>0.673352</td>\n",
-       "      <td>7.770955</td>\n",
+       "      <td>-4.491355</td>\n",
+       "      <td>7.873466</td>\n",
+       "      <td>8.606818</td>\n",
+       "      <td>558.331088</td>\n",
+       "      <td>-0.313155</td>\n",
+       "      <td>4.295540</td>\n",
+       "      <td>12.141283</td>\n",
+       "      <td>4.295540</td>\n",
+       "      <td>4.216795</td>\n",
+       "      <td>5.181243</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <td>3</td>\n",
-       "      <td>-5.173189</td>\n",
-       "      <td>-4.511308</td>\n",
-       "      <td>-2.333962</td>\n",
-       "      <td>7.364836</td>\n",
-       "      <td>7.364836</td>\n",
-       "      <td>-2.333962</td>\n",
-       "      <td>11.725401</td>\n",
-       "      <td>2.504044</td>\n",
-       "      <td>-0.051420</td>\n",
-       "      <td>-0.661881</td>\n",
+       "      <th>3</th>\n",
+       "      <td>-1.239111</td>\n",
+       "      <td>-0.334024</td>\n",
+       "      <td>-1.284023</td>\n",
+       "      <td>12.035499</td>\n",
+       "      <td>12.035499</td>\n",
+       "      <td>-1.284023</td>\n",
+       "      <td>19.790232</td>\n",
+       "      <td>1.359155</td>\n",
+       "      <td>-0.007846</td>\n",
+       "      <td>-0.905088</td>\n",
        "      <td>...</td>\n",
-       "      <td>-0.681200</td>\n",
-       "      <td>7.506732</td>\n",
-       "      <td>9.110446</td>\n",
-       "      <td>885.755585</td>\n",
-       "      <td>-2.504044</td>\n",
-       "      <td>0.656561</td>\n",
-       "      <td>7.514520</td>\n",
-       "      <td>0.656561</td>\n",
-       "      <td>0.646653</td>\n",
-       "      <td>8.450394</td>\n",
+       "      <td>-2.063827</td>\n",
+       "      <td>9.002800</td>\n",
+       "      <td>10.772472</td>\n",
+       "      <td>647.037371</td>\n",
+       "      <td>-1.359155</td>\n",
+       "      <td>2.016495</td>\n",
+       "      <td>26.609381</td>\n",
+       "      <td>2.016495</td>\n",
+       "      <td>1.997461</td>\n",
+       "      <td>7.712080</td>\n",
        "    </tr>\n",
        "    <tr>\n",
-       "      <td>4</td>\n",
-       "      <td>-6.787036</td>\n",
-       "      <td>-5.645414</td>\n",
-       "      <td>-1.521566</td>\n",
-       "      <td>6.373250</td>\n",
-       "      <td>6.373250</td>\n",
-       "      <td>-1.521566</td>\n",
-       "      <td>4.823373</td>\n",
-       "      <td>3.452123</td>\n",
-       "      <td>-0.126943</td>\n",
-       "      <td>-1.141621</td>\n",
+       "      <th>4</th>\n",
+       "      <td>-1.943290</td>\n",
+       "      <td>-1.571257</td>\n",
+       "      <td>-0.842072</td>\n",
+       "      <td>11.035900</td>\n",
+       "      <td>11.035900</td>\n",
+       "      <td>-0.842072</td>\n",
+       "      <td>15.963163</td>\n",
+       "      <td>0.288986</td>\n",
+       "      <td>-0.861444</td>\n",
+       "      <td>-0.372033</td>\n",
        "      <td>...</td>\n",
-       "      <td>-0.510598</td>\n",
-       "      <td>9.307459</td>\n",
-       "      <td>10.941500</td>\n",
-       "      <td>749.854462</td>\n",
-       "      <td>-3.452123</td>\n",
-       "      <td>0.474878</td>\n",
-       "      <td>6.235982</td>\n",
-       "      <td>0.474878</td>\n",
-       "      <td>0.460514</td>\n",
-       "      <td>8.908012</td>\n",
+       "      <td>-1.468256</td>\n",
+       "      <td>7.188997</td>\n",
+       "      <td>8.085781</td>\n",
+       "      <td>368.039875</td>\n",
+       "      <td>-0.288986</td>\n",
+       "      <td>1.465663</td>\n",
+       "      <td>5.730886</td>\n",
+       "      <td>1.465663</td>\n",
+       "      <td>1.464620</td>\n",
+       "      <td>8.298285</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
        "</table>\n",
@@ -197,26 +206,26 @@
        "</div>"
       ],
       "text/plain": [
-       "      ACALD    ACALDt      ACKr    ACONTa    ACONTb     ACt2r       ADK1  \\\n",
-       "0 -2.060626 -0.766231 -1.746726  6.136642  6.136642 -1.746726  13.915541   \n",
-       "1 -1.518217 -1.265778 -0.253608  9.081331  9.081331 -0.253608   7.194475   \n",
-       "2 -3.790368 -1.292543 -0.457502  9.340755  9.340755 -0.457502  23.435794   \n",
-       "3 -5.173189 -4.511308 -2.333962  7.364836  7.364836 -2.333962  11.725401   \n",
-       "4 -6.787036 -5.645414 -1.521566  6.373250  6.373250 -1.521566   4.823373   \n",
+       "      ACALD    ACALDt      ACKr     ACONTa     ACONTb     ACt2r       ADK1  \\\n",
+       "0 -0.771296 -0.431093 -2.284246   6.735302   6.735302 -2.284246   2.273930   \n",
+       "1 -2.089680 -1.099843 -0.386453  10.477790  10.477790 -0.386453   3.396770   \n",
+       "2 -1.108346 -0.126460 -1.198639   5.057819   5.057819 -1.198639   7.154043   \n",
+       "3 -1.239111 -0.334024 -1.284023  12.035499  12.035499 -1.284023  19.790232   \n",
+       "4 -1.943290 -1.571257 -0.842072  11.035900  11.035900 -0.842072  15.963163   \n",
        "\n",
-       "      AKGDH    AKGt2r    ALCD2x  ...       RPI   SUCCt2_2     SUCCt3  \\\n",
-       "0  2.174506 -0.242290 -1.294395  ... -6.117270  33.457990  34.319917   \n",
-       "1  5.979050 -0.225992 -0.252439  ... -5.072733  39.902893  40.343192   \n",
-       "2  1.652395 -0.333891 -2.497825  ... -0.674220   0.153276   1.506968   \n",
-       "3  2.504044 -0.051420 -0.661881  ... -0.681200   7.506732   9.110446   \n",
-       "4  3.452123 -0.126943 -1.141621  ... -0.510598   9.307459  10.941500   \n",
+       "      AKGDH    AKGt2r    ALCD2x  ...       RPI  SUCCt2_2     SUCCt3  \\\n",
+       "0  3.942050 -1.589360 -0.340203  ... -2.314416  6.997002   8.082133   \n",
+       "1  3.163168 -1.592767 -0.989837  ... -1.756359  3.093051   3.415053   \n",
+       "2  0.313155 -0.227554 -0.981886  ... -4.491355  7.873466   8.606818   \n",
+       "3  1.359155 -0.007846 -0.905088  ... -2.063827  9.002800  10.772472   \n",
+       "4  0.288986 -0.861444 -0.372033  ... -1.468256  7.188997   8.085781   \n",
        "\n",
-       "        SUCDi    SUCOAS      TALA      THD2      TKT1      TKT2       TPI  \n",
-       "0  704.483302 -2.174506  6.109618  0.230408  6.109618  6.106540  3.122076  \n",
-       "1  718.488475 -5.979050  4.991843  0.137019  4.991843  4.959315  4.172389  \n",
-       "2  844.889698 -1.652395  0.673601  9.198001  0.673601  0.673352  7.770955  \n",
-       "3  885.755585 -2.504044  0.656561  7.514520  0.656561  0.646653  8.450394  \n",
-       "4  749.854462 -3.452123  0.474878  6.235982  0.474878  0.460514  8.908012  \n",
+       "        SUCDi    SUCOAS      TALA       THD2      TKT1      TKT2       TPI  \n",
+       "0  335.977726 -3.942050  2.152983  12.850348  2.152983  2.088065  7.542984  \n",
+       "1  540.804734 -3.163168  1.657479  56.649368  1.657479  1.617715  8.029587  \n",
+       "2  558.331088 -0.313155  4.295540  12.141283  4.295540  4.216795  5.181243  \n",
+       "3  647.037371 -1.359155  2.016495  26.609381  2.016495  1.997461  7.712080  \n",
+       "4  368.039875 -0.288986  1.465663   5.730886  1.465663  1.464620  8.298285  \n",
        "\n",
        "[5 rows x 95 columns]"
       ]
@@ -227,10 +236,10 @@
     }
    ],
    "source": [
-    "from cobra.test import create_test_model\n",
+    "from cobra.io import load_model\n",
     "from cobra.sampling import sample\n",
     "\n",
-    "model = create_test_model(\"textbook\")\n",
+    "model = load_model(\"textbook\")\n",
     "s = sample(model, 100)\n",
     "s.head()"
    ]
@@ -252,11 +261,11 @@
      "output_type": "stream",
      "text": [
       "One process:\n",
-      "CPU times: user 19.7 s, sys: 918 ms, total: 20.6 s\n",
-      "Wall time: 16.1 s\n",
+      "CPU times: user 9.8 s, sys: 333 ms, total: 10.1 s\n",
+      "Wall time: 9.21 s\n",
       "Two processes:\n",
-      "CPU times: user 1.31 s, sys: 154 ms, total: 1.46 s\n",
-      "Wall time: 8.76 s\n"
+      "CPU times: user 186 ms, sys: 41.2 ms, total: 227 ms\n",
+      "Wall time: 5.26 s\n"
      ]
     }
    ],
@@ -501,7 +510,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Usually 14.50% +- 2.16% grow...\n"
+      "Usually 6.30% +- 1.49% grow...\n"
      ]
     }
    ],
@@ -551,16 +560,16 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "0    0.124471\n",
-      "1    0.151331\n",
-      "2    0.108145\n",
-      "3    0.144076\n",
-      "4    0.110480\n",
-      "5    0.109024\n",
-      "6    0.111399\n",
-      "7    0.139682\n",
-      "8    0.103511\n",
-      "9    0.116880\n",
+      "0    0.106248\n",
+      "1    0.116061\n",
+      "2    0.113978\n",
+      "3    0.179056\n",
+      "4    0.117057\n",
+      "5    0.111005\n",
+      "6    0.182250\n",
+      "7    0.114853\n",
+      "8    0.128597\n",
+      "9    0.160970\n",
       "Name: Biomass_Ecoli_core, dtype: float64\n"
      ]
     }
@@ -581,7 +590,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -595,7 +604,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.7"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/simulating.ipynb b/documentation_builder/simulating.ipynb
index c9b8dc22f..6abdfe9cf 100644
--- a/documentation_builder/simulating.ipynb
+++ b/documentation_builder/simulating.ipynb
@@ -18,10 +18,20 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Scaling...\n",
+      " A: min|aij| =  1.000e+00  max|aij| =  1.000e+00  ratio =  1.000e+00\n",
+      "Problem data seem to be well scaled\n"
+     ]
+    }
+   ],
    "source": [
-    "import cobra.test\n",
-    "model = cobra.test.create_test_model(\"textbook\")"
+    "from cobra.io import load_model\n",
+    "model = load_model(\"textbook\")"
    ]
   },
   {
@@ -40,7 +50,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "<Solution 0.874 at 0x7f920c907d60>\n"
+      "<Solution 0.874 at 0x7f993e396048>\n"
      ]
     }
    ],
@@ -104,8 +114,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "CPU times: user 590 µs, sys: 642 µs, total: 1.23 ms\n",
-      "Wall time: 1.24 ms\n"
+      "CPU times: user 1.45 ms, sys: 8 µs, total: 1.46 ms\n",
+      "Wall time: 1.47 ms\n"
      ]
     },
     {
@@ -133,8 +143,8 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "CPU times: user 85 µs, sys: 91 µs, total: 176 µs\n",
-      "Wall time: 180 µs\n"
+      "CPU times: user 86 µs, sys: 0 ns, total: 86 µs\n",
+      "Wall time: 88.9 µs\n"
      ]
     },
     {
@@ -251,7 +261,7 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.model_summary.ModelSummary at 0x7f90db4c4a00>"
+       "<cobra.summary.model_summary.ModelSummary at 0x7f993e396a90>"
       ]
      },
      "execution_count": 6,
@@ -339,7 +349,7 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f90db3fe1c0>"
+       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f993e38f908>"
       ]
      },
      "execution_count": 7,
@@ -439,7 +449,7 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f920c91a670>"
+       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f993e38f978>"
       ]
      },
      "execution_count": 8,
@@ -489,7 +499,7 @@
     {
      "data": {
       "text/plain": [
-       "{<Reaction Biomass_Ecoli_core at 0x7f90db4d2d90>: 1.0}"
+       "{<Reaction Biomass_Ecoli_core at 0x7f9941fce128>: 1.0}"
       ]
      },
      "execution_count": 10,
@@ -517,7 +527,7 @@
     {
      "data": {
       "text/plain": [
-       "{<Reaction ATPM at 0x7f90db4d2c40>: 1.0}"
+       "{<Reaction ATPM at 0x7f9941fce828>: 1.0}"
       ]
      },
      "execution_count": 11,
@@ -658,7 +668,7 @@
        "    </tr>\n",
        "    <tr>\n",
        "      <th>AKGt2r</th>\n",
-       "      <td>-1.586328e-14</td>\n",
+       "      <td>-1.451321e-14</td>\n",
        "      <td>0.000000e+00</td>\n",
        "    </tr>\n",
        "    <tr>\n",
@@ -680,7 +690,7 @@
        "ACt2r  -4.012477e-14  0.000000e+00\n",
        "ADK1    0.000000e+00  1.705303e-13\n",
        "AKGDH   2.000000e+01  2.000000e+01\n",
-       "AKGt2r -1.586328e-14  0.000000e+00\n",
+       "AKGt2r -1.451321e-14  0.000000e+00\n",
        "ALCD2x -2.273737e-14  0.000000e+00"
       ]
      },
@@ -953,7 +963,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 17,
    "metadata": {},
    "outputs": [
     {
@@ -1116,10 +1126,10 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.model_summary.ModelSummary at 0x7f91ef756bb0>"
+       "<cobra.summary.model_summary.ModelSummary at 0x7f993e420ba8>"
       ]
      },
-     "execution_count": 18,
+     "execution_count": 17,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1138,7 +1148,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": 18,
    "metadata": {},
    "outputs": [
     {
@@ -1241,10 +1251,10 @@
        "</table>"
       ],
       "text/plain": [
-       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f91ef756e50>"
+       "<cobra.summary.metabolite_summary.MetaboliteSummary at 0x7f993e4780f0>"
       ]
      },
-     "execution_count": 19,
+     "execution_count": 18,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1276,7 +1286,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
+   "execution_count": 19,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1296,7 +1306,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 21,
+   "execution_count": 20,
    "metadata": {},
    "outputs": [
     {
@@ -1305,7 +1315,7 @@
        "8.881784197001252e-16"
       ]
      },
-     "execution_count": 21,
+     "execution_count": 20,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1317,7 +1327,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 22,
+   "execution_count": 21,
    "metadata": {},
    "outputs": [
     {
@@ -1326,7 +1336,7 @@
        "True"
       ]
      },
-     "execution_count": 22,
+     "execution_count": 21,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1355,7 +1365,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 22,
    "metadata": {},
    "outputs": [
     {
@@ -1445,10 +1455,10 @@
        "</div>"
       ],
       "text/plain": [
-       "<Solution 0.000 at 0x7f91ef658af0>"
+       "<Solution 0.000 at 0x7f993e4fb518>"
       ]
      },
-     "execution_count": 23,
+     "execution_count": 22,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1457,11 +1467,18 @@
     "geometric_fba_sol = cobra.flux_analysis.geometric_fba(model)\n",
     "geometric_fba_sol"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -1475,7 +1492,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.5"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/documentation_builder/solvers.ipynb b/documentation_builder/solvers.ipynb
index d2bc82211..f2e37115f 100644
--- a/documentation_builder/solvers.ipynb
+++ b/documentation_builder/solvers.ipynb
@@ -9,10 +9,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "A constraint-based reconstruction and analysis model for biological systems is actually just an application of a class of discrete optimization problems typically solved with [linear, mixed integer](https://en.wikipedia.org/wiki/Linear_programming) or [quadratic programming](https://en.wikipedia.org/wiki/Quadratic_programming) techniques. Cobrapy does not implement any algorithm to find solutions to such problems but rather creates a biologically motivated abstraction to these techniques to make it easier to think of how metabolic systems work without paying much attention to how that formulates to an optimization problem.\n",
     "\n",
@@ -24,25 +21,17 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "import cobra.test\n",
-    "model = cobra.test.create_test_model('textbook')"
+    "from cobra.io import load_model\n",
+    "model = load_model('textbook')"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "model.solver = 'glpk'\n",
@@ -52,10 +41,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "For information on how to configure and tune the solver, please see the [documentation for optlang project](http://optlang.readthedocs.io) and note that `model.solver` is simply an optlang object of class `Model`."
    ]
@@ -63,11 +49,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": false,
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -86,20 +68,14 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "## Internal solver interfaces"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "deletable": true,
-    "editable": true
-   },
+   "metadata": {},
    "source": [
     "Cobrapy also contains its own solver interfaces but these are now deprecated and will be removed completely in the near future. For documentation of how to use these, please refer to [older documentation](http://cobrapy.readthedocs.io/en/0.5.11/)."
    ]
@@ -107,7 +83,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -121,7 +97,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.2"
+   "version": "3.7.1"
   }
  },
  "nbformat": 4,
diff --git a/release-notes/next-release.md b/release-notes/next-release.md
index 0f1931f6d..ec2f3203b 100644
--- a/release-notes/next-release.md
+++ b/release-notes/next-release.md
@@ -22,6 +22,9 @@ fail more comprehensibly.
 
 ## Other
 
+Moved tests to a different directory, from `src/cobra/test` 
+to `tests`
+
 Added two tests for GPR fixes
 test_gpr_wrong_input()
 test_gpr_that_needs_two_replacements()
diff --git a/setup.cfg b/setup.cfg
index cfca70ef0..560467d06 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -79,8 +79,8 @@ where = src
 
 [options.package_data]
 cobra =
-	io/*.json
-	test/data/*
+    data/*
+    io/*.json
 
 [options.extras_require]
 array =
diff --git a/src/cobra/core/dictlist.py b/src/cobra/core/dictlist.py
index 6a862f9ab..b4a41f0e2 100644
--- a/src/cobra/core/dictlist.py
+++ b/src/cobra/core/dictlist.py
@@ -134,8 +134,8 @@ def query(
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model('textbook')
+        >>> from cobra.io import load_model
+        >>> model = load_model('textbook')
         >>> model.reactions.query(lambda x: x.boundary)
         >>> import re
         >>> regex = re.compile('^g', flags=re.IGNORECASE)
diff --git a/src/cobra/core/metabolite.py b/src/cobra/core/metabolite.py
index 2376f6945..6b3d31dc9 100644
--- a/src/cobra/core/metabolite.py
+++ b/src/cobra/core/metabolite.py
@@ -240,9 +240,8 @@ def shadow_price(self) -> float:
 
         Examples
         --------
-        >>> import cobra
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
+        >>> from cobra.io import load_model
+        >>> model = load_model("textbook")
         >>> solution = model.optimize()
         >>> model.metabolites.glc__D_e.shadow_price
         -0.09166474637510488
diff --git a/src/cobra/core/model.py b/src/cobra/core/model.py
index e6160209a..5abf5acaf 100644
--- a/src/cobra/core/model.py
+++ b/src/cobra/core/model.py
@@ -126,10 +126,9 @@ def solver(self):
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
-        >>> new = model.problem.Constraint(model.objective.expression,
-        >>> lb=0.99)
+        >>> from cobra.io import load_model
+        >>> model = load_model("textbook")
+        >>> new = model.problem.Constraint(model.objective.expression, lb=0.99)
         >>> model.solver.add(new)
         """
         return self._solver
@@ -217,9 +216,10 @@ def compartments(self, value):
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
+        >>> from cobra.io import load_model
+        >>> model = load_model("textbook")
         >>> model.compartments = {'c': 'the cytosol'}
+        >>> model.compartments
         {'c': 'the cytosol', 'e': 'extracellular'}
         """
         self._compartments.update(value)
@@ -580,8 +580,8 @@ def add_boundary(
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
+        >>> from cobra.io load_model
+        >>> model = load_model("textbook")
         >>> demand = model.add_boundary(model.metabolites.atp_c, type="demand")
         >>> demand.id
         'DM_atp_c'
diff --git a/src/cobra/core/reaction.py b/src/cobra/core/reaction.py
index 4620f16ad..4da43208f 100644
--- a/src/cobra/core/reaction.py
+++ b/src/cobra/core/reaction.py
@@ -485,8 +485,8 @@ def flux(self) -> float:
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
+        >>> from cobra.io import load_model
+        >>> model = load_model("textbook")
         >>> solution = model.optimize()
         >>> model.reactions.PFK.flux
         7.477381962160283
@@ -542,8 +542,8 @@ def reduced_cost(self) -> float:
 
         Examples
         --------
-        >>> import cobra.test
-        >>> model = cobra.test.create_test_model("textbook")
+        >>> from cobra.io import load_model
+        >>> model = load_model("textbook")
         >>> solution = model.optimize()
         >>> model.reactions.PFK.reduced_cost
         -8.673617379884035e-18
diff --git a/src/cobra/test/data/iJO1366.xml.gz b/src/cobra/data/iJO1366.xml.gz
similarity index 100%
rename from src/cobra/test/data/iJO1366.xml.gz
rename to src/cobra/data/iJO1366.xml.gz
diff --git a/src/cobra/data/iYS1720.xml.gz b/src/cobra/data/iYS1720.xml.gz
new file mode 100644
index 000000000..82b618ba2
Binary files /dev/null and b/src/cobra/data/iYS1720.xml.gz differ
diff --git a/src/cobra/test/test_manipulation/__init__.py b/src/cobra/data/init.py
similarity index 100%
rename from src/cobra/test/test_manipulation/__init__.py
rename to src/cobra/data/init.py
diff --git a/src/cobra/test/data/mini.json b/src/cobra/data/mini.json
similarity index 100%
rename from src/cobra/test/data/mini.json
rename to src/cobra/data/mini.json
diff --git a/src/cobra/data/mini.mat b/src/cobra/data/mini.mat
new file mode 100644
index 000000000..a470f0f50
Binary files /dev/null and b/src/cobra/data/mini.mat differ
diff --git a/src/cobra/test/data/mini.pickle b/src/cobra/data/mini.pickle
similarity index 100%
rename from src/cobra/test/data/mini.pickle
rename to src/cobra/data/mini.pickle
diff --git a/src/cobra/test/data/mini.yml b/src/cobra/data/mini.yml
similarity index 100%
rename from src/cobra/test/data/mini.yml
rename to src/cobra/data/mini.yml
diff --git a/src/cobra/data/mini_cobra.xml b/src/cobra/data/mini_cobra.xml
new file mode 100644
index 000000000..5f2e7b547
--- /dev/null
+++ b/src/cobra/data/mini_cobra.xml
@@ -0,0 +1,1418 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns="http://www.sbml.org/sbml/level3/version1/core" sboTerm="SBO:0000624" level="3" version="1" fbc:required="false">
+  <model metaid="meta_mini_textbook" id="mini_textbook" fbc:strict="true">
+    <listOfUnitDefinitions>
+      <unitDefinition id="mmol_per_gDW_per_hr">
+        <listOfUnits>
+          <unit kind="mole" exponent="1" scale="-3" multiplier="1"/>
+          <unit kind="gram" exponent="-1" scale="0" multiplier="1"/>
+          <unit kind="second" exponent="-1" scale="0" multiplier="3600"/>
+        </listOfUnits>
+      </unitDefinition>
+    </listOfUnitDefinitions>
+    <listOfCompartments>
+      <compartment id="c" name="cytosol" constant="true"/>
+      <compartment id="e" name="extracellular" constant="true"/>
+    </listOfCompartments>
+    <listOfSpecies>
+      <species metaid="meta_M_13dpg_c" id="M_13dpg_c" name="3-Phospho-D-glyceroyl phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_13dpg_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dpg"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/DPG"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16001"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1658"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:20189"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57604"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11881"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01270"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00236"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3535"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29800"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00203"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00236"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_2pg_c" id="M_2pg_c" name="D-Glycerate 2-phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_2pg_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2pg"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/2-PG"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1267"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58289"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17835"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:21028"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11651"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:12986"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:24344"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39868"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03391"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00362"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00631"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3904"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_30485"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00482"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00631"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_3pg_c" id="M_3pg_c" name="3-Phospho-D-glycerate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_3pg_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3pg"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/G3P"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:40016"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58272"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57998"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11879"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1657"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1659"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17050"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:21029"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11882"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11880"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:12987"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17794"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:24345"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00807"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00197"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00597"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3497"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29728"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00169"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00597"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00197"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_adp_c" id="M_adp_c" name="ADP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_adp_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/ADP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/ADP-GROUP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/cas/58-64-0"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13222"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16761"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2342"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22244"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:40553"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:456216"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01341"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00008"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.glycan/G11113"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3310"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_190072"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_481002"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_211606"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_429160"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29370"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_196180"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113581"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113582"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_114564"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_114565"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_429153"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00008"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00008"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_atp_c" id="M_atp_c" name="ATP" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_atp_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/ATP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/cas/56-65-5"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:40938"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15422"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57299"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13236"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10789"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30616"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22249"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10841"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2359"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00538"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00002"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D08646"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3304"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_190078"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113592"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113593"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_114570"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29358"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_389573"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_139836"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_211579"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00002"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00002"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_dhap_c" id="M_dhap_c" name="Dihydroxyacetone phosphate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_dhap_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhap"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/DIHYDROXY-ACETONE-PHOSPHATE"/>
+                  <rdf:li rdf:resource="https://identifiers.org/cas/57-04-5"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14341"/>
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+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14791"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34855"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29137"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29139"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63036"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26020"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39739"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32597"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32596"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:43474"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63051"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:43470"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9679"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35433"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4496"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45024"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18367"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26078"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39745"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:24838"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02142"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C13556"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C13558"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00009"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D05467"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3311"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_947590"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_109277"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113548"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_2255331"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29372"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113550"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113551"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd09464"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd09463"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00009"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00009"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_pi_e" id="M_pi_e" name="Phosphate" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_pi_e">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/Pi"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/PHOSPHATE-GROUP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/CPD0-1421"/>
+                  <rdf:li rdf:resource="https://identifiers.org/cas/14265-44-2"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37583"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7793"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37585"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34683"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14791"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34855"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29137"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29139"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63036"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26020"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39739"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32597"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32596"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:43474"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63051"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:43470"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9679"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35433"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4496"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45024"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18367"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26078"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39745"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:24838"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02142"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C13556"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C13558"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00009"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D05467"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3311"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_947590"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_109277"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113548"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_2255331"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29372"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113550"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113551"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd09464"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd09463"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00009"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00009"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="meta_M_pyr_c" id="M_pyr_c" name="Pyruvate" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_M_pyr_c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyr"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/PYRUVATE"/>
+                  <rdf:li rdf:resource="https://identifiers.org/cas/127-17-3"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15361"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14987"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:8685"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32816"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45253"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26466"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:26462"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00243"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00022"/>
+                  <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01060077"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.substance/3324"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_113557"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_389680"/>
+                  <rdf:li rdf:resource="https://identifiers.org/reactome/REACT_29398"/>
+                  <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00020"/>
+                  <rdf:li rdf:resource="https://identifiers.org/unipathway.compound/UPC00022"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+    </listOfSpecies>
+    <listOfParameters>
+      <parameter sboTerm="SBO:0000626" id="cobra_default_lb" value="-1000" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="cobra_default_ub" value="1000" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="cobra_0_bound" value="0" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="minus_inf" value="-INF" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="plus_inf" value="INF" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="R_ATPM_lower_bound" value="8.39" units="mmol_per_gDW_per_hr" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="R_EX_glc__D_e_lower_bound" value="-10" units="mmol_per_gDW_per_hr" constant="true"/>
+    </listOfParameters>
+    <listOfReactions>
+      <reaction metaid="meta_R_ATPM" id="R_ATPM" name="ATP maintenance requirement" reversible="false" fast="false" fbc:lowerFluxBound="R_ATPM_lower_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_ATPM">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPM"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction id="R_D_LACt2" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub"/>
+      <reaction metaid="meta_R_ENO" id="R_ENO" name="enolase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_ENO">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENO"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="G_b2779"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_EX_glc__D_e" sboTerm="SBO:0000627" id="R_EX_glc__D_e" name="D-Glucose exchange" reversible="true" fast="false" fbc:lowerFluxBound="R_EX_glc__D_e_lower_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_EX_glc__D_e">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/glc"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+      </reaction>
+      <reaction metaid="meta_R_EX_h_e" sboTerm="SBO:0000627" id="R_EX_h_e" name="H+ exchange" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_EX_h_e">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/h"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+      </reaction>
+      <reaction metaid="meta_R_EX_lac__D_e" sboTerm="SBO:0000627" id="R_EX_lac__D_e" name="D-lactate exchange" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_EX_lac__D_e">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/lac__D"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_lac__D_e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+      </reaction>
+      <reaction metaid="meta_R_FBA" id="R_FBA" name="fructose-bisphosphate aldolase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_FBA">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FBA"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b1773"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b2097"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b2925"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_GAPD" id="R_GAPD" name="glyceraldehyde-3-phosphate dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_GAPD">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAPD"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="G_b1779"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_GLCpts" id="R_GLCpts" name="D-glucose transport via PEP:Pyr PTS" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_GLCpts">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCpts"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_glc__D_e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:and>
+              <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b2417"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b1101"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
+            </fbc:and>
+            <fbc:and>
+              <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b2417"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b1621"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
+            </fbc:and>
+            <fbc:and>
+              <fbc:geneProductRef fbc:geneProduct="G_b2415"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b1818"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b1817"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b1819"/>
+              <fbc:geneProductRef fbc:geneProduct="G_b2416"/>
+            </fbc:and>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_H2Ot" id="R_H2Ot" name="R H2O transport via - diffusion" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_H2Ot">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Ot"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_h2o_e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_h2o_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b0875"/>
+            <fbc:geneProductRef fbc:geneProduct="G_s0001"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_LDH_D" sboTerm="SBO:0000375" id="R_LDH_D" name="D-lactate dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_LDH_D">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LDH_D"/>
+                  <rdf:li rdf:resource="https://identifiers.org/biocyc/META:DLACTDEHYDROGNAD-RXN"/>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.28"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00704"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101037"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/16369"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/16370"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/16371"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/16372"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_lac__D_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b2133"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b1380"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PFK" id="R_PFK" name="phosphofructokinase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PFK">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PFK"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_fdp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b3916"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b1723"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PGI" id="R_PGI" name="glucose-6-phosphate isomerase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PGI">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGI"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_g6p_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_f6p_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="G_b4025"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PGK" id="R_PGK" name="phosphoglycerate kinase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PGK">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGK"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_13dpg_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="G_b2926"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PGM" id="R_PGM" name="phosphoglycerate mutase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PGM">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGM"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_2pg_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_3pg_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b4395"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b3612"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b0755"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PIt2r" id="R_PIt2r" name="R phosphate reversible transport via - symport" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PIt2r">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt2r"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_pi_e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h_e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pi_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b2987"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b3493"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_PYK" id="R_PYK" name="pyruvate kinase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_PYK">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYK"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_adp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_h_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pep_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_atp_c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_pyr_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="G_b1854"/>
+            <fbc:geneProductRef fbc:geneProduct="G_b1676"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="meta_R_TPI" id="R_TPI" name="triose-phosphate isomerase" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_TPI">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TPI"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_dhap_c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_g3p_c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="G_b3919"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+    </listOfReactions>
+    <fbc:listOfObjectives fbc:activeObjective="obj">
+      <fbc:objective fbc:id="obj" fbc:type="maximize">
+        <fbc:listOfFluxObjectives>
+          <fbc:fluxObjective fbc:reaction="R_ATPM" fbc:coefficient="1"/>
+          <fbc:fluxObjective fbc:reaction="R_PFK" fbc:coefficient="1"/>
+        </fbc:listOfFluxObjectives>
+      </fbc:objective>
+    </fbc:listOfObjectives>
+    <fbc:listOfGeneProducts>
+      <fbc:geneProduct fbc:id="G_b0755" fbc:name="gpmA" fbc:label="G_b0755"/>
+      <fbc:geneProduct fbc:id="G_b0875" fbc:name="aqpZ" fbc:label="G_b0875"/>
+      <fbc:geneProduct fbc:id="G_b1101" fbc:name="ptsG" fbc:label="G_b1101"/>
+      <fbc:geneProduct fbc:id="G_b1380" fbc:name="ldhA" fbc:label="G_b1380"/>
+      <fbc:geneProduct fbc:id="G_b1621" fbc:name="malX" fbc:label="G_b1621"/>
+      <fbc:geneProduct metaid="meta_G_b1676" fbc:id="G_b1676" fbc:name="pykF" fbc:label="G_b1676">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_G_b1676">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1208453"/>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1652654"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </fbc:geneProduct>
+      <fbc:geneProduct fbc:id="G_b1723" fbc:name="pfkB" fbc:label="G_b1723"/>
+      <fbc:geneProduct fbc:id="G_b1773" fbc:name="ydjI" fbc:label="G_b1773"/>
+      <fbc:geneProduct fbc:id="G_b1779" fbc:name="gapA" fbc:label="G_b1779"/>
+      <fbc:geneProduct fbc:id="G_b1817" fbc:name="manX" fbc:label="G_b1817"/>
+      <fbc:geneProduct fbc:id="G_b1818" fbc:name="manY" fbc:label="G_b1818"/>
+      <fbc:geneProduct fbc:id="G_b1819" fbc:name="manZ" fbc:label="G_b1819"/>
+      <fbc:geneProduct fbc:id="G_b1854" fbc:name="pykA" fbc:label="G_b1854"/>
+      <fbc:geneProduct fbc:id="G_b2097" fbc:name="fbaB" fbc:label="G_b2097"/>
+      <fbc:geneProduct fbc:id="G_b2133" fbc:name="dld" fbc:label="G_b2133"/>
+      <fbc:geneProduct fbc:id="G_b2415" fbc:name="ptsH" fbc:label="G_b2415"/>
+      <fbc:geneProduct fbc:id="G_b2416" fbc:name="ptsI" fbc:label="G_b2416"/>
+      <fbc:geneProduct fbc:id="G_b2417" fbc:name="crr" fbc:label="G_b2417"/>
+      <fbc:geneProduct metaid="meta_G_b2779" fbc:id="G_b2779" fbc:name="eno" fbc:label="G_b2779">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_G_b2779">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1653839"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </fbc:geneProduct>
+      <fbc:geneProduct fbc:id="G_b2925" fbc:name="fbaA" fbc:label="G_b2925"/>
+      <fbc:geneProduct metaid="meta_G_b2926" fbc:id="G_b2926" fbc:name="pgk" fbc:label="G_b2926">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_G_b2926">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1653609"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </fbc:geneProduct>
+      <fbc:geneProduct fbc:id="G_b2987" fbc:name="pitB" fbc:label="G_b2987"/>
+      <fbc:geneProduct fbc:id="G_b3493" fbc:name="pitA" fbc:label="G_b3493"/>
+      <fbc:geneProduct fbc:id="G_b3612" fbc:name="gpmM" fbc:label="G_b3612"/>
+      <fbc:geneProduct metaid="meta_G_b3916" fbc:id="G_b3916" fbc:name="pfkA" fbc:label="G_b3916">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_G_b3916">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1006614"/>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1651919"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </fbc:geneProduct>
+      <fbc:geneProduct fbc:id="G_b3919" fbc:name="tpiA" fbc:label="G_b3919"/>
+      <fbc:geneProduct metaid="meta_G_b4025" fbc:id="G_b4025" fbc:name="pgi" fbc:label="G_b4025">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_G_b4025">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ncbigi/GI:1653253"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </fbc:geneProduct>
+      <fbc:geneProduct fbc:id="G_b4395" fbc:name="ytjC" fbc:label="G_b4395"/>
+      <fbc:geneProduct fbc:id="G_s0001" fbc:name="G_s0001" fbc:label="G_s0001"/>
+    </fbc:listOfGeneProducts>
+  </model>
+</sbml>
diff --git a/src/cobra/test/data/textbook.xml.gz b/src/cobra/data/textbook.xml.gz
similarity index 100%
rename from src/cobra/test/data/textbook.xml.gz
rename to src/cobra/data/textbook.xml.gz
diff --git a/src/cobra/flux_analysis/gapfilling.py b/src/cobra/flux_analysis/gapfilling.py
index c2a169c25..3012f6d74 100644
--- a/src/cobra/flux_analysis/gapfilling.py
+++ b/src/cobra/flux_analysis/gapfilling.py
@@ -385,10 +385,10 @@ def gapfill(
 
     Examples
     --------
-    >>> import cobra.test as ct
+    >>> from cobra.io import load_model
     >>> from cobra import Model
     >>> from cobra.flux_analysis import gapfill
-    >>> model = ct.create_test_model("salmonella")
+    >>> model = load_model("iYS1720")
     >>> universal = Model("universal")
     >>> universal.add_reactions([model.reactions.GF6PTA.copy()])
     >>> model.remove_reactions([model.reactions.GF6PTA])
diff --git a/src/cobra/flux_analysis/phenotype_phase_plane.py b/src/cobra/flux_analysis/phenotype_phase_plane.py
index d3beca9ae..51aeed661 100644
--- a/src/cobra/flux_analysis/phenotype_phase_plane.py
+++ b/src/cobra/flux_analysis/phenotype_phase_plane.py
@@ -81,9 +81,9 @@ def production_envelope(
 
     Examples
     --------
-    >>> import cobra.test
+    >>> import cobra.io
     >>> from cobra.flux_analysis import production_envelope
-    >>> model = cobra.test.create_test_model("textbook")
+    >>> model = cobra.io.load_model("textbook")
     >>> production_envelope(model, ["EX_glc__D_e", "EX_o2_e"])
         carbon_source  flux_minimum  carbon_yield_minimum  mass_yield_minimum ...
     0     EX_glc__D_e           0.0                   0.0                 NaN ...
diff --git a/src/cobra/io/json.py b/src/cobra/io/json.py
index d281b6f70..8fec5191d 100644
--- a/src/cobra/io/json.py
+++ b/src/cobra/io/json.py
@@ -1,6 +1,6 @@
 """Provide functions for I/O in JSON format."""
-
-from typing import TYPE_CHECKING, Any
+from pathlib import Path
+from typing import TYPE_CHECKING, Any, Union
 
 from .dict import model_from_dict, model_to_dict
 
@@ -69,7 +69,7 @@ def from_json(document: str) -> "Model":
 
 def save_json_model(
     model: "Model",
-    filename: str,
+    filename: Union[str, Path],
     sort: bool = False,
     pretty: bool = False,
     **kwargs: Any
@@ -118,14 +118,14 @@ def save_json_model(
         }
     dump_opts.update(**kwargs)
 
-    if isinstance(filename, str):
+    if isinstance(filename, (str, Path)):
         with open(filename, "w") as file_handle:
             json.dump(obj, file_handle, **dump_opts)
     else:
         json.dump(obj, filename, **dump_opts)
 
 
-def load_json_model(filename: str) -> "Model":
+def load_json_model(filename: Union[str, Path]) -> "Model":
     """Load a cobra model from a file in JSON format.
 
     Parameters
@@ -144,7 +144,7 @@ def load_json_model(filename: str) -> "Model":
     from_json : Load from a JSON string.
 
     """
-    if isinstance(filename, str):
+    if isinstance(filename, (str, Path)):
         with open(filename, "r") as file_handle:
             return model_from_dict(json.load(file_handle))
     else:
diff --git a/src/cobra/io/web/cobrapy_repository.py b/src/cobra/io/web/cobrapy_repository.py
new file mode 100644
index 000000000..0cb92a223
--- /dev/null
+++ b/src/cobra/io/web/cobrapy_repository.py
@@ -0,0 +1,57 @@
+"""Provide functions for loading metabolic models from local package data."""
+
+
+import importlib_resources
+
+import cobra.data
+
+from .abstract_model_repository import AbstractModelRepository
+
+
+class Cobrapy(AbstractModelRepository):
+    """
+    Define a concrete implementation of the cobrapy (local package) repository.
+
+     Attributes
+    ----------
+    name : str
+        The name of the Cobrapy repository.
+    """
+
+    name: str = "Cobrapy"
+
+    def __init__(
+        self,
+        **kwargs,
+    ) -> None:
+        """
+        Initialize a local Cobrapy repository interface.
+
+        Other Parameters
+        ----------------
+        kwargs
+            Passed to the parent constructor in order to enable multiple inheritance.
+
+        """
+        super().__init__(url="file:////", **kwargs)
+
+    def get_sbml(self, model_id: str) -> bytes:
+        """
+        Attempt to open an SBML document from the local repository.
+
+        Parameters
+        ----------
+        model_id : str
+            The identifier of the desired metabolic model. This is typically repository
+            specific.
+
+        Returns
+        -------
+        bytes
+            A gzip-compressed, UTF-8 encoded SBML document.
+        """
+        return (
+            importlib_resources.files("cobra.data")
+            .joinpath(f"{model_id}.xml.gz")
+            .read_bytes()
+        )
diff --git a/src/cobra/io/web/load.py b/src/cobra/io/web/load.py
index 4bf69c0d1..d734fec4c 100644
--- a/src/cobra/io/web/load.py
+++ b/src/cobra/io/web/load.py
@@ -14,6 +14,7 @@
 from .abstract_model_repository import AbstractModelRepository
 from .bigg_models_repository import BiGGModels
 from .biomodels_repository import BioModels
+from .cobrapy_repository import Cobrapy
 
 
 if TYPE_CHECKING:
@@ -26,7 +27,11 @@
 
 def load_model(
     model_id: str,
-    repositories: Iterable[AbstractModelRepository] = (BiGGModels(), BioModels()),
+    repositories: Iterable[AbstractModelRepository] = (
+        Cobrapy(),
+        BiGGModels(),
+        BioModels(),
+    ),
     cache: bool = True,
 ) -> "Model":
     """
@@ -150,6 +155,11 @@ def _fetch_model(
         )
         try:
             return repository.get_sbml(model_id=model_id)
+        except (FileNotFoundError, OSError):
+            logger.debug(
+                f"Model '{model_id} not found in the local "
+                f"repository {repository.name}.'"
+            )
         except httpx.HTTPStatusError as error:
             if error.response.status_code == 404:
                 logger.debug(
diff --git a/src/cobra/io/yaml.py b/src/cobra/io/yaml.py
index 69e875804..0d6b874d0 100644
--- a/src/cobra/io/yaml.py
+++ b/src/cobra/io/yaml.py
@@ -1,7 +1,8 @@
 """Provide functions for I/O in YAML format."""
 
 import io
-from typing import TYPE_CHECKING, Any, Dict, Optional
+from pathlib import Path
+from typing import TYPE_CHECKING, Any, Dict, Optional, Union
 
 from ruamel.yaml.compat import StringIO
 from ruamel.yaml.main import YAML
@@ -139,7 +140,7 @@ def save_yaml_model(
         yaml.dump(obj, filename, **kwargs)
 
 
-def load_yaml_model(filename: str) -> "Model":
+def load_yaml_model(filename: Union[str, Path]) -> "Model":
     """Load a cobra model from a file in YAML format.
 
     Parameters
@@ -158,7 +159,7 @@ def load_yaml_model(filename: str) -> "Model":
     from_yaml : Load from a string.
 
     """
-    if isinstance(filename, str):
+    if isinstance(filename, (str, Path)):
         with io.open(filename, "r") as file_handle:
             return model_from_dict(yaml.load(file_handle))
     else:
diff --git a/src/cobra/test/__init__.py b/src/cobra/test/__init__.py
deleted file mode 100644
index a3247c446..000000000
--- a/src/cobra/test/__init__.py
+++ /dev/null
@@ -1,59 +0,0 @@
-# -*- coding: utf-8 -*-
-
-from __future__ import absolute_import
-
-from os.path import abspath, dirname, join
-
-from cobra.io import read_sbml_model
-
-try:
-    import pytest
-    import pytest_benchmark
-except ImportError:
-    pytest = None
-try:
-    from cPickle import load as _load
-except ImportError:
-    from pickle import load as _load
-
-cobra_directory = abspath(join(dirname(abspath(__file__)), ".."))
-cobra_location = abspath(join(cobra_directory, ".."))
-data_dir = join(cobra_directory, "test", "data", "")
-
-
-def create_test_model(model_name="salmonella"):
-    """Returns a cobra model for testing
-
-    model_name: str
-        One of 'ecoli', 'textbook', or 'salmonella', or the
-        path to a pickled cobra.Model
-
-    """
-    if model_name == "ecoli":
-        ecoli_sbml = join(data_dir, "iJO1366.xml.gz")
-        return read_sbml_model(ecoli_sbml)
-    elif model_name == "textbook":
-        textbook_sbml = join(data_dir, "textbook.xml.gz")
-        return read_sbml_model(textbook_sbml)
-    elif model_name == "mini":
-        mini_sbml = join(data_dir, "mini_fbc2.xml")
-        return read_sbml_model(mini_sbml)
-    elif model_name == "salmonella":
-        salmonella_pickle = join(data_dir, "salmonella.pickle")
-        model_name = salmonella_pickle
-    with open(model_name, "rb") as infile:
-        return _load(infile)
-
-
-def test_all(args=None):
-    """alias for running all unit-tests on installed cobra"""
-    if pytest:
-        args = args if args else []
-
-        return pytest.main(
-            ["--pyargs", "cobra", "--benchmark-skip", "-v", "-rs"] + args
-        )
-    else:
-        raise ImportError(
-            "missing package pytest and pytest_benchmark" " required for testing"
-        )
diff --git a/src/cobra/test/test_io/conftest.py b/src/cobra/test/test_io/conftest.py
deleted file mode 100644
index aeb9b38d3..000000000
--- a/src/cobra/test/test_io/conftest.py
+++ /dev/null
@@ -1,110 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""Contains module level fixtures and utility functions."""
-
-from __future__ import absolute_import
-
-from os.path import join
-from pickle import load
-
-import pytest
-from optlang.interface import OPTIMAL
-
-
-@pytest.fixture(scope="module")
-def mini_model(data_directory):
-    """Fixture for mini model."""
-    with open(join(data_directory, "mini.pickle"), "rb") as infile:
-        return load(infile)
-
-
-def compare_models(model_1, model_2):
-    """Compare two models (only for testing purposes)."""
-    assert len(model_1.reactions) == len(model_2.reactions)
-    assert len(model_1.metabolites) == len(model_2.metabolites)
-    assert len(model_1.genes) == len(model_2.genes)
-    assert model_1.objective.direction == model_2.objective.direction
-
-    # check Reaction attributes
-    for attr in (
-        "id",
-        "name",
-        "lower_bound",
-        "upper_bound",
-        "objective_coefficient",
-        "gene_reaction_rule",
-    ):
-        assert getattr(model_1.reactions[0], attr) == getattr(
-            model_2.reactions[0], attr
-        )
-        assert getattr(model_1.reactions[5], attr) == getattr(
-            model_2.reactions[5], attr
-        )
-        assert getattr(model_1.reactions[-1], attr) == getattr(
-            model_2.reactions[-1], attr
-        )
-
-    # check Metabolite attributes
-    for attr in ("id", "name", "compartment", "formula", "charge"):
-        assert getattr(model_1.metabolites[0], attr) == getattr(
-            model_2.metabolites[0], attr
-        )
-        assert getattr(model_1.metabolites[5], attr) == getattr(
-            model_2.metabolites[5], attr
-        )
-        assert getattr(model_1.metabolites[-1], attr) == getattr(
-            model_2.metabolites[-1], attr
-        )
-        assert len(model_1.reactions[0].metabolites) == len(
-            model_2.reactions[0].metabolites
-        )
-    # TODO: either relax gene attribute checking or fix models for testing.
-    # check Gene attributes
-    # for attr in ("id", "name"):
-    #     assert getattr(model_1.genes[0], attr) == getattr(model_2.genes[0],
-    #                                                       attr)
-    #     assert getattr(model_1.genes[10], attr) == getattr(model_2.genes[10],
-    #                                                        attr)
-    #     assert getattr(model_1.genes[-1], attr) == getattr(model_2.genes[-1],
-    #                                                        attr)
-
-    assert len(model_1.reactions[8].metabolites) == len(
-        model_2.reactions[8].metabolites
-    )
-    assert len(model_1.reactions[-1].metabolites) == len(
-        model_2.reactions[-1].metabolites
-    )
-    assert len(model_1.genes) == len(model_2.genes)
-
-    # ensure they have the same solution max
-    solution_1 = model_1.optimize()
-    solution_2 = model_2.optimize()
-    if solution_1.status == OPTIMAL and solution_2.status == OPTIMAL:
-        assert abs(
-            solution_1.objective_value - solution_2.objective_value
-        ) == pytest.approx(0.0)
-    else:
-        assert solution_1.status == solution_2.status
-
-    # ensure the references are correct
-    # metabolite -> model reference
-    assert model_1.metabolites[0]._model is model_1
-    assert model_2.metabolites[0]._model is model_2
-
-    # reaction -> model reference
-    assert model_1.reactions[0]._model is model_1
-    assert model_2.reactions[0]._model is model_2
-
-    # gene -> model reference
-    if len(model_1.genes):
-        assert model_1.genes[0]._model is model_1
-        assert model_2.genes[0]._model is model_2
-
-    # extra comparisons
-    # assert model_1.compartments == model_2.compartments
-    # assert dict(model_1.metabolites[4].annotation) == dict(
-    #     model_2.metabolites[4].annotation)
-    # assert dict(model_1.reactions[4].annotation) == dict(
-    #     model_2.reactions[4].annotation)
-    # assert dict(model_1.genes[5].annotation) == dict(
-    #     model_2.genes[5].annotation)
diff --git a/src/cobra/test/test_io/test_pickle.py b/src/cobra/test/test_io/test_pickle.py
deleted file mode 100644
index 56e1c5e59..000000000
--- a/src/cobra/test/test_io/test_pickle.py
+++ /dev/null
@@ -1,47 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""Test data storage and recovery using pickle."""
-
-from __future__ import absolute_import
-
-from os.path import join
-from pickle import dump, load
-
-import pytest
-
-from cobra.test.test_io.conftest import compare_models
-
-
-try:
-    import cPickle
-
-    cload = cPickle.load
-    cdump = cPickle.dump
-except ImportError:
-    cload = None
-    cdump = None
-
-
-@pytest.mark.parametrize("load_function", [load, cload])
-def test_read_pickle(data_directory, mini_model, load_function):
-    """Test the reading of model from pickle."""
-    if load_function is None:
-        pytest.skip()
-
-    with open(join(data_directory, "mini.pickle"), "rb") as infile:
-        pickle_model = load_function(infile)
-
-    assert compare_models(mini_model, pickle_model) is None
-
-
-@pytest.mark.parametrize("dump_function", [dump, cdump])
-def test_write_pickle(tmpdir, mini_model, dump_function):
-    """Test the writing of model to pickle."""
-    if dump_function is None:
-        pytest.skip()
-
-    output_file = tmpdir.join("mini.pickle")
-    with open(str(output_file), "wb") as outfile:
-        dump_function(mini_model, outfile)
-
-    assert output_file.check()
diff --git a/src/cobra/test/conftest.py b/tests/conftest.py
similarity index 70%
rename from src/cobra/test/conftest.py
rename to tests/conftest.py
index c8d51bade..f5c37545b 100644
--- a/src/cobra/test/conftest.py
+++ b/tests/conftest.py
@@ -1,30 +1,46 @@
 """Define global fixtures."""
 
 from os.path import join
-
-import pytest
+from pathlib import Path
+from pickle import load as _load
 
 from cobra import Metabolite, Model, Reaction
-from cobra.test import create_test_model, data_dir
+from cobra.io import read_sbml_model
 from cobra.util import solver as sutil
 
 
 try:
-    from cPickle import load as _load
+    import pytest
+    import pytest_benchmark
 except ImportError:
-    from pickle import load as _load
-
-
-def pytest_addoption(parser):
-    try:
-        parser.addoption("--run-slow", action="store_true", help="run slow tests")
-        parser.addoption(
-            "--run-non-deterministic",
-            action="store_true",
-            help="run tests that sometimes (rarely) fail",
-        )
-    except ValueError:
-        pass
+    pytest = None
+
+
+data_dir = Path(__file__).parent / "data"
+
+
+def create_test_model(model_name="salmonella") -> Model:
+    """Return a cobra model for testing.
+
+    model_name: str
+        One of 'ecoli', 'textbook', or 'salmonella', or the
+        path to a pickled cobra.Model
+
+    """
+    if model_name == "ecoli":
+        ecoli_sbml = str(data_dir / "iJO1366.xml.gz")
+        return read_sbml_model(ecoli_sbml)
+    elif model_name == "textbook":
+        textbook_sbml = join(data_dir, "textbook.xml.gz")
+        return read_sbml_model(textbook_sbml)
+    elif model_name == "mini":
+        mini_sbml = join(data_dir, "mini_fbc2.xml")
+        return read_sbml_model(mini_sbml)
+    elif model_name == "salmonella":
+        salmonella_pickle = join(data_dir, "salmonella.pickle")
+        model_name = salmonella_pickle
+    with open(model_name, "rb") as infile:
+        return _load(infile)
 
 
 @pytest.fixture(scope="session")
diff --git a/src/cobra/test/data/AntCore.mat b/tests/data/AntCore.mat
similarity index 100%
rename from src/cobra/test/data/AntCore.mat
rename to tests/data/AntCore.mat
diff --git a/src/cobra/test/data/Ec_iAF1260_flux1.mat b/tests/data/Ec_iAF1260_flux1.mat
similarity index 100%
rename from src/cobra/test/data/Ec_iAF1260_flux1.mat
rename to tests/data/Ec_iAF1260_flux1.mat
diff --git a/src/cobra/test/data/JSON_with_inf_bounds.json b/tests/data/JSON_with_inf_bounds.json
similarity index 100%
rename from src/cobra/test/data/JSON_with_inf_bounds.json
rename to tests/data/JSON_with_inf_bounds.json
diff --git a/src/cobra/test/data/annotation.xml b/tests/data/annotation.xml
similarity index 100%
rename from src/cobra/test/data/annotation.xml
rename to tests/data/annotation.xml
diff --git a/src/cobra/test/data/cardiac_mit_glcuptake_atpmax.mat b/tests/data/cardiac_mit_glcuptake_atpmax.mat
similarity index 100%
rename from src/cobra/test/data/cardiac_mit_glcuptake_atpmax.mat
rename to tests/data/cardiac_mit_glcuptake_atpmax.mat
diff --git a/src/cobra/test/data/compartments.mat b/tests/data/compartments.mat
similarity index 100%
rename from src/cobra/test/data/compartments.mat
rename to tests/data/compartments.mat
diff --git a/src/cobra/test/data/e_coli_core.xml b/tests/data/e_coli_core.xml
similarity index 100%
rename from src/cobra/test/data/e_coli_core.xml
rename to tests/data/e_coli_core.xml
diff --git a/src/cobra/test/data/example_notes.xml b/tests/data/example_notes.xml
similarity index 100%
rename from src/cobra/test/data/example_notes.xml
rename to tests/data/example_notes.xml
diff --git a/src/cobra/test/data/fbc_ex1.xml b/tests/data/fbc_ex1.xml
similarity index 100%
rename from src/cobra/test/data/fbc_ex1.xml
rename to tests/data/fbc_ex1.xml
diff --git a/src/cobra/test/data/fbc_ex2.xml b/tests/data/fbc_ex2.xml
similarity index 100%
rename from src/cobra/test/data/fbc_ex2.xml
rename to tests/data/fbc_ex2.xml
diff --git a/src/cobra/test/data/iJO1366.pickle b/tests/data/iJO1366.pickle
similarity index 100%
rename from src/cobra/test/data/iJO1366.pickle
rename to tests/data/iJO1366.pickle
diff --git a/tests/data/iJO1366.xml.gz b/tests/data/iJO1366.xml.gz
new file mode 100644
index 000000000..a65b366c7
Binary files /dev/null and b/tests/data/iJO1366.xml.gz differ
diff --git a/src/cobra/test/data/invalid0.xml b/tests/data/invalid0.xml
similarity index 100%
rename from src/cobra/test/data/invalid0.xml
rename to tests/data/invalid0.xml
diff --git a/src/cobra/test/data/invalid1.xml b/tests/data/invalid1.xml
similarity index 100%
rename from src/cobra/test/data/invalid1.xml
rename to tests/data/invalid1.xml
diff --git a/src/cobra/test/data/invalid2.xml b/tests/data/invalid2.xml
similarity index 100%
rename from src/cobra/test/data/invalid2.xml
rename to tests/data/invalid2.xml
diff --git a/src/cobra/test/data/invalid_annotation_format.json b/tests/data/invalid_annotation_format.json
similarity index 100%
rename from src/cobra/test/data/invalid_annotation_format.json
rename to tests/data/invalid_annotation_format.json
diff --git a/tests/data/mini.json b/tests/data/mini.json
new file mode 100644
index 000000000..658bd26c1
--- /dev/null
+++ b/tests/data/mini.json
@@ -0,0 +1,1394 @@
+{
+    "compartments": {
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+            },
+            "charge": -1,
+            "compartment": "c",
+            "formula": "C3H5O3",
+            "id": "lac__D_c",
+            "name": "D-Lactate"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "lac__D",
+                "biocyc": "META:D-LACTATE",
+                "chebi": [
+                    "CHEBI:11001",
+                    "CHEBI:16004",
+                    "CHEBI:18684",
+                    "CHEBI:341",
+                    "CHEBI:42105",
+                    "CHEBI:42111",
+                    "CHEBI:43701"
+                ],
+                "hmdb": [
+                    "HMDB00171",
+                    "HMDB01311"
+                ],
+                "kegg.compound": "C00256",
+                "metanetx.chemical": "MNXM285",
+                "seed.compound": "cpd00221"
+            },
+            "charge": -1,
+            "compartment": "e",
+            "formula": "C3H5O3",
+            "id": "lac__D_e",
+            "name": "D-Lactate"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "nad",
+                "biocyc": "NAD",
+                "cas": [
+                    "53-84-9"
+                ],
+                "chebi": [
+                    "CHEBI:21901",
+                    "CHEBI:7422",
+                    "CHEBI:44214",
+                    "CHEBI:15846",
+                    "CHEBI:13394",
+                    "CHEBI:13393",
+                    "CHEBI:44215",
+                    "CHEBI:13389",
+                    "CHEBI:57540",
+                    "CHEBI:44281"
+                ],
+                "hmdb": "HMDB00902",
+                "kegg.compound": "C00003",
+                "kegg.drug": "D00002",
+                "pubchem.substance": "3305",
+                "reactome": [
+                    "REACT_192307",
+                    "REACT_29360",
+                    "REACT_427523",
+                    "REACT_194653",
+                    "REACT_113526"
+                ],
+                "seed.compound": "cpd00003",
+                "unipathway.compound": "UPC00003"
+            },
+            "charge": -1,
+            "compartment": "c",
+            "formula": "C21H26N7O14P2",
+            "id": "nad_c",
+            "name": "Nicotinamide adenine dinucleotide"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "nadh",
+                "biocyc": "NADH",
+                "cas": [
+                    "58-68-4"
+                ],
+                "chebi": [
+                    "CHEBI:13395",
+                    "CHEBI:21902",
+                    "CHEBI:16908",
+                    "CHEBI:7423",
+                    "CHEBI:44216",
+                    "CHEBI:57945",
+                    "CHEBI:13396"
+                ],
+                "hmdb": "HMDB01487",
+                "kegg.compound": "C00004",
+                "pubchem.substance": "3306",
+                "reactome": [
+                    "REACT_192305",
+                    "REACT_73473",
+                    "REACT_194697",
+                    "REACT_29362"
+                ],
+                "seed.compound": "cpd00004",
+                "unipathway.compound": "UPC00004"
+            },
+            "charge": -2,
+            "compartment": "c",
+            "formula": "C21H27N7O14P2",
+            "id": "nadh_c",
+            "name": "Nicotinamide adenine dinucleotide - reduced"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "pep",
+                "biocyc": "PHOSPHO-ENOL-PYRUVATE",
+                "cas": [
+                    "138-08-9"
+                ],
+                "chebi": [
+                    "CHEBI:44897",
+                    "CHEBI:44894",
+                    "CHEBI:14812",
+                    "CHEBI:8147",
+                    "CHEBI:26055",
+                    "CHEBI:26054",
+                    "CHEBI:58702",
+                    "CHEBI:18021"
+                ],
+                "hmdb": "HMDB00263",
+                "kegg.compound": "C00074",
+                "pubchem.substance": "3374",
+                "reactome": [
+                    "REACT_29492",
+                    "REACT_372364"
+                ],
+                "seed.compound": "cpd00061",
+                "unipathway.compound": "UPC00074"
+            },
+            "charge": -3,
+            "compartment": "c",
+            "formula": "C3H2O6P",
+            "id": "pep_c",
+            "name": "Phosphoenolpyruvate"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "pi",
+                "biocyc": [
+                    "Pi",
+                    "PHOSPHATE-GROUP",
+                    "CPD0-1421"
+                ],
+                "cas": [
+                    "14265-44-2"
+                ],
+                "chebi": [
+                    "CHEBI:37583",
+                    "CHEBI:7793",
+                    "CHEBI:37585",
+                    "CHEBI:34683",
+                    "CHEBI:14791",
+                    "CHEBI:34855",
+                    "CHEBI:29137",
+                    "CHEBI:29139",
+                    "CHEBI:63036",
+                    "CHEBI:26020",
+                    "CHEBI:39739",
+                    "CHEBI:32597",
+                    "CHEBI:32596",
+                    "CHEBI:43474",
+                    "CHEBI:63051",
+                    "CHEBI:43470",
+                    "CHEBI:9679",
+                    "CHEBI:35433",
+                    "CHEBI:4496",
+                    "CHEBI:45024",
+                    "CHEBI:18367",
+                    "CHEBI:26078",
+                    "CHEBI:39745",
+                    "CHEBI:24838"
+                ],
+                "hmdb": "HMDB02142",
+                "kegg.compound": [
+                    "C13556",
+                    "C13558",
+                    "C00009"
+                ],
+                "kegg.drug": "D05467",
+                "pubchem.substance": "3311",
+                "reactome": [
+                    "REACT_947590",
+                    "REACT_109277",
+                    "REACT_113548",
+                    "REACT_2255331",
+                    "REACT_29372",
+                    "REACT_113550",
+                    "REACT_113551"
+                ],
+                "seed.compound": [
+                    "cpd09464",
+                    "cpd09463",
+                    "cpd00009"
+                ],
+                "unipathway.compound": "UPC00009"
+            },
+            "charge": -2,
+            "compartment": "c",
+            "formula": "HO4P",
+            "id": "pi_c",
+            "name": "Phosphate"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "pi",
+                "biocyc": [
+                    "Pi",
+                    "PHOSPHATE-GROUP",
+                    "CPD0-1421"
+                ],
+                "cas": [
+                    "14265-44-2"
+                ],
+                "chebi": [
+                    "CHEBI:37583",
+                    "CHEBI:7793",
+                    "CHEBI:37585",
+                    "CHEBI:34683",
+                    "CHEBI:14791",
+                    "CHEBI:34855",
+                    "CHEBI:29137",
+                    "CHEBI:29139",
+                    "CHEBI:63036",
+                    "CHEBI:26020",
+                    "CHEBI:39739",
+                    "CHEBI:32597",
+                    "CHEBI:32596",
+                    "CHEBI:43474",
+                    "CHEBI:63051",
+                    "CHEBI:43470",
+                    "CHEBI:9679",
+                    "CHEBI:35433",
+                    "CHEBI:4496",
+                    "CHEBI:45024",
+                    "CHEBI:18367",
+                    "CHEBI:26078",
+                    "CHEBI:39745",
+                    "CHEBI:24838"
+                ],
+                "hmdb": "HMDB02142",
+                "kegg.compound": [
+                    "C13556",
+                    "C13558",
+                    "C00009"
+                ],
+                "kegg.drug": "D05467",
+                "pubchem.substance": "3311",
+                "reactome": [
+                    "REACT_947590",
+                    "REACT_109277",
+                    "REACT_113548",
+                    "REACT_2255331",
+                    "REACT_29372",
+                    "REACT_113550",
+                    "REACT_113551"
+                ],
+                "seed.compound": [
+                    "cpd09464",
+                    "cpd09463",
+                    "cpd00009"
+                ],
+                "unipathway.compound": "UPC00009"
+            },
+            "charge": -2,
+            "compartment": "e",
+            "formula": "HO4P",
+            "id": "pi_e",
+            "name": "Phosphate"
+        },
+        {
+            "annotation": {
+                "bigg.metabolite": "pyr",
+                "biocyc": "PYRUVATE",
+                "cas": [
+                    "127-17-3"
+                ],
+                "chebi": [
+                    "CHEBI:15361",
+                    "CHEBI:14987",
+                    "CHEBI:8685",
+                    "CHEBI:32816",
+                    "CHEBI:45253",
+                    "CHEBI:26466",
+                    "CHEBI:26462"
+                ],
+                "hmdb": "HMDB00243",
+                "kegg.compound": "C00022",
+                "lipidmaps": "LMFA01060077",
+                "pubchem.substance": "3324",
+                "reactome": [
+                    "REACT_113557",
+                    "REACT_389680",
+                    "REACT_29398"
+                ],
+                "seed.compound": "cpd00020",
+                "unipathway.compound": "UPC00022"
+            },
+            "charge": -1,
+            "compartment": "c",
+            "formula": "C3H3O3",
+            "id": "pyr_c",
+            "name": "Pyruvate"
+        }
+    ],
+    "reactions": [
+        {
+            "annotation": {
+                "bigg.reaction": "ATPM"
+            },
+            "gene_reaction_rule": "",
+            "id": "ATPM",
+            "lower_bound": 8.39,
+            "metabolites": {
+                "adp_c": 1.0,
+                "atp_c": -1.0,
+                "h2o_c": -1.0,
+                "h_c": 1.0,
+                "pi_c": 1.0
+            },
+            "name": "ATP maintenance requirement",
+            "objective_coefficient": 1.0,
+            "upper_bound": 1000.0
+        },
+        {
+            "gene_reaction_rule": "",
+            "id": "D_LACt2",
+            "lower_bound": -1000.0,
+            "metabolites": {},
+            "name": "",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "ENO"
+            },
+            "gene_reaction_rule": "b2779",
+            "id": "ENO",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "2pg_c": -1.0,
+                "h2o_c": 1.0,
+                "pep_c": 1.0
+            },
+            "name": "enolase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "glc",
+                "sbo": "SBO:0000627"
+            },
+            "gene_reaction_rule": "",
+            "id": "EX_glc__D_e",
+            "lower_bound": -10.0,
+            "metabolites": {
+                "glc__D_e": -1.0
+            },
+            "name": "D-Glucose exchange",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "h",
+                "sbo": "SBO:0000627"
+            },
+            "gene_reaction_rule": "",
+            "id": "EX_h_e",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "h_e": -1.0
+            },
+            "name": "H+ exchange",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "lac__D",
+                "sbo": "SBO:0000627"
+            },
+            "gene_reaction_rule": "",
+            "id": "EX_lac__D_e",
+            "lower_bound": 0.0,
+            "metabolites": {
+                "lac__D_e": -1.0
+            },
+            "name": "D-lactate exchange",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "FBA"
+            },
+            "gene_reaction_rule": "b1773 or b2097 or b2925",
+            "id": "FBA",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "dhap_c": 1.0,
+                "fdp_c": -1.0,
+                "g3p_c": 1.0
+            },
+            "name": "fructose-bisphosphate aldolase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "GAPD"
+            },
+            "gene_reaction_rule": "b1779",
+            "id": "GAPD",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "13dpg_c": 1.0,
+                "g3p_c": -1.0,
+                "h_c": 1.0,
+                "nad_c": -1.0,
+                "nadh_c": 1.0,
+                "pi_c": -1.0
+            },
+            "name": "glyceraldehyde-3-phosphate dehydrogenase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "GLCpts"
+            },
+            "gene_reaction_rule": "(b2415 and b2417 and b1101 and b2416) or (b2415 and b2417 and b1621 and b2416) or (b2415 and b1818 and b1817 and b1819 and b2416)",
+            "id": "GLCpts",
+            "lower_bound": 0.0,
+            "metabolites": {
+                "g6p_c": 1.0,
+                "glc__D_e": -1.0,
+                "pep_c": -1.0,
+                "pyr_c": 1.0
+            },
+            "name": "D-glucose transport via PEP:Pyr PTS",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "H2Ot"
+            },
+            "gene_reaction_rule": "b0875 or s0001",
+            "id": "H2Ot",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "h2o_c": 1.0,
+                "h2o_e": -1.0
+            },
+            "name": "R H2O transport via - diffusion",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "LDH_D",
+                "biocyc": "META:DLACTDEHYDROGNAD-RXN",
+                "ec-code": "1.1.1.28",
+                "kegg.reaction": "R00704",
+                "metanetx.reaction": "MNXR101037",
+                "rhea": [
+                    "16369",
+                    "16370",
+                    "16371",
+                    "16372"
+                ],
+                "sbo": "SBO:0000375"
+            },
+            "gene_reaction_rule": "b2133 or b1380",
+            "id": "LDH_D",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "h_c": 1.0,
+                "lac__D_c": -1.0,
+                "nad_c": -1.0,
+                "nadh_c": 1.0,
+                "pyr_c": 1.0
+            },
+            "name": "D-lactate dehydrogenase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PFK"
+            },
+            "gene_reaction_rule": "b3916 or b1723",
+            "id": "PFK",
+            "lower_bound": 0.0,
+            "metabolites": {
+                "adp_c": 1.0,
+                "atp_c": -1.0,
+                "f6p_c": -1.0,
+                "fdp_c": 1.0,
+                "h_c": 1.0
+            },
+            "name": "phosphofructokinase",
+            "objective_coefficient": 1.0,
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PGI"
+            },
+            "gene_reaction_rule": "b4025",
+            "id": "PGI",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "f6p_c": 1.0,
+                "g6p_c": -1.0
+            },
+            "name": "glucose-6-phosphate isomerase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PGK"
+            },
+            "gene_reaction_rule": "b2926",
+            "id": "PGK",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "13dpg_c": 1.0,
+                "3pg_c": -1.0,
+                "adp_c": 1.0,
+                "atp_c": -1.0
+            },
+            "name": "phosphoglycerate kinase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PGM"
+            },
+            "gene_reaction_rule": "b4395 or b3612 or b0755",
+            "id": "PGM",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "2pg_c": -1.0,
+                "3pg_c": 1.0
+            },
+            "name": "phosphoglycerate mutase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PIt2r"
+            },
+            "gene_reaction_rule": "b2987 or b3493",
+            "id": "PIt2r",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "h_c": 1.0,
+                "h_e": -1.0,
+                "pi_c": 1.0,
+                "pi_e": -1.0
+            },
+            "name": "R phosphate reversible transport via - symport",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "PYK"
+            },
+            "gene_reaction_rule": "b1854 or b1676",
+            "id": "PYK",
+            "lower_bound": 0.0,
+            "metabolites": {
+                "adp_c": -1.0,
+                "atp_c": 1.0,
+                "h_c": -1.0,
+                "pep_c": -1.0,
+                "pyr_c": 1.0
+            },
+            "name": "pyruvate kinase",
+            "upper_bound": 1000.0
+        },
+        {
+            "annotation": {
+                "bigg.reaction": "TPI"
+            },
+            "gene_reaction_rule": "b3919",
+            "id": "TPI",
+            "lower_bound": -1000.0,
+            "metabolites": {
+                "dhap_c": -1.0,
+                "g3p_c": 1.0
+            },
+            "name": "triose-phosphate isomerase",
+            "upper_bound": 1000.0
+        }
+    ],
+    "version": "1"
+}
\ No newline at end of file
diff --git a/src/cobra/test/data/mini.mat b/tests/data/mini.mat
similarity index 100%
rename from src/cobra/test/data/mini.mat
rename to tests/data/mini.mat
diff --git a/tests/data/mini.pickle b/tests/data/mini.pickle
new file mode 100644
index 000000000..135ce225e
Binary files /dev/null and b/tests/data/mini.pickle differ
diff --git a/tests/data/mini.yml b/tests/data/mini.yml
new file mode 100644
index 000000000..e5e9e3b05
--- /dev/null
+++ b/tests/data/mini.yml
@@ -0,0 +1,1169 @@
+!!omap
+- metabolites:
+  - !!omap
+    - id: 13dpg_c
+    - name: 3-Phospho-D-glyceroyl phosphate
+    - compartment: c
+    - charge: -4
+    - formula: C3H4O10P2
+    - annotation: !!omap
+      - bigg.metabolite: 13dpg
+      - biocyc: DPG
+      - chebi:
+        - CHEBI:16001
+        - CHEBI:1658
+        - CHEBI:20189
+        - CHEBI:57604
+        - CHEBI:11881
+      - hmdb: HMDB01270
+      - kegg.compound: C00236
+      - pubchem.substance: '3535'
+      - reactome: REACT_29800
+      - seed.compound: cpd00203
+      - unipathway.compound: UPC00236
+  - !!omap
+    - id: 2pg_c
+    - name: D-Glycerate 2-phosphate
+    - compartment: c
+    - charge: -3
+    - formula: C3H4O7P
+    - annotation: !!omap
+      - bigg.metabolite: 2pg
+      - biocyc: 2-PG
+      - chebi:
+        - CHEBI:1267
+        - CHEBI:58289
+        - CHEBI:17835
+        - CHEBI:21028
+        - CHEBI:11651
+        - CHEBI:12986
+        - CHEBI:24344
+        - CHEBI:39868
+      - hmdb:
+        - HMDB03391
+        - HMDB00362
+      - kegg.compound: C00631
+      - pubchem.substance: '3904'
+      - reactome: REACT_30485
+      - seed.compound: cpd00482
+      - unipathway.compound: UPC00631
+  - !!omap
+    - id: 3pg_c
+    - name: 3-Phospho-D-glycerate
+    - compartment: c
+    - charge: -3
+    - formula: C3H4O7P
+    - annotation: !!omap
+      - bigg.metabolite: 3pg
+      - biocyc: G3P
+      - chebi:
+        - CHEBI:40016
+        - CHEBI:58272
+        - CHEBI:57998
+        - CHEBI:11879
+        - CHEBI:1657
+        - CHEBI:1659
+        - CHEBI:17050
+        - CHEBI:21029
+        - CHEBI:11882
+        - CHEBI:11880
+        - CHEBI:12987
+        - CHEBI:17794
+        - CHEBI:24345
+      - hmdb: HMDB00807
+      - kegg.compound:
+        - C00197
+        - C00597
+      - pubchem.substance: '3497'
+      - reactome: REACT_29728
+      - seed.compound: cpd00169
+      - unipathway.compound:
+        - UPC00597
+        - UPC00197
+  - !!omap
+    - id: adp_c
+    - name: ADP
+    - compartment: c
+    - charge: -3
+    - formula: C10H12N5O10P2
+    - annotation: !!omap
+      - bigg.metabolite: adp
+      - biocyc:
+        - ADP
+        - ADP-GROUP
+      - cas:
+        - 58-64-0
+      - chebi:
+        - CHEBI:13222
+        - CHEBI:16761
+        - CHEBI:2342
+        - CHEBI:22244
+        - CHEBI:40553
+        - CHEBI:456216
+      - hmdb: HMDB01341
+      - kegg.compound: C00008
+      - kegg.glycan: G11113
+      - pubchem.substance: '3310'
+      - reactome:
+        - REACT_190072
+        - REACT_481002
+        - REACT_211606
+        - REACT_429160
+        - REACT_29370
+        - REACT_196180
+        - REACT_113581
+        - REACT_113582
+        - REACT_114564
+        - REACT_114565
+        - REACT_429153
+      - seed.compound: cpd00008
+      - unipathway.compound: UPC00008
+  - !!omap
+    - id: atp_c
+    - name: ATP
+    - compartment: c
+    - charge: -4
+    - formula: C10H12N5O13P3
+    - annotation: !!omap
+      - bigg.metabolite: atp
+      - biocyc: ATP
+      - cas:
+        - 56-65-5
+      - chebi:
+        - CHEBI:40938
+        - CHEBI:15422
+        - CHEBI:57299
+        - CHEBI:13236
+        - CHEBI:10789
+        - CHEBI:30616
+        - CHEBI:22249
+        - CHEBI:10841
+        - CHEBI:2359
+      - hmdb: HMDB00538
+      - kegg.compound: C00002
+      - kegg.drug: D08646
+      - pubchem.substance: '3304'
+      - reactome:
+        - REACT_190078
+        - REACT_113592
+        - REACT_113593
+        - REACT_114570
+        - REACT_29358
+        - REACT_389573
+        - REACT_139836
+        - REACT_211579
+      - seed.compound: cpd00002
+      - unipathway.compound: UPC00002
+  - !!omap
+    - id: dhap_c
+    - name: Dihydroxyacetone phosphate
+    - compartment: c
+    - charge: -2
+    - formula: C3H5O6P
+    - annotation: !!omap
+      - bigg.metabolite: dhap
+      - biocyc: DIHYDROXY-ACETONE-PHOSPHATE
+      - cas:
+        - 57-04-5
+      - chebi:
+        - CHEBI:14341
+        - CHEBI:57642
+        - CHEBI:14342
+        - CHEBI:16108
+        - CHEBI:5454
+        - CHEBI:24355
+        - CHEBI:39571
+      - hmdb:
+        - HMDB01473
+        - HMDB11735
+      - kegg.compound: C00111
+      - pubchem.substance: '3411'
+      - reactome:
+        - REACT_188451
+        - REACT_75970
+        - REACT_390404
+      - seed.compound: cpd00095
+      - unipathway.compound: UPC00111
+  - !!omap
+    - id: f6p_c
+    - name: D-Fructose 6-phosphate
+    - compartment: c
+    - charge: -2
+    - formula: C6H11O9P
+    - annotation: !!omap
+      - bigg.metabolite: f6p
+      - biocyc: FRUCTOSE-6P
+      - cas:
+        - 643-13-0
+      - chebi:
+        - CHEBI:57634
+        - CHEBI:12352
+        - CHEBI:45804
+        - CHEBI:61527
+        - CHEBI:61553
+        - CHEBI:10375
+        - CHEBI:16084
+        - CHEBI:42378
+        - CHEBI:22768
+      - hmdb: HMDB03971
+      - kegg.compound:
+        - C05345
+        - C00085
+      - pubchem.substance: '3385'
+      - seed.compound: cpd00072
+      - unipathway.compound:
+        - UPC05345
+        - UPC00085
+  - !!omap
+    - id: fdp_c
+    - name: D-Fructose 1,6-bisphosphate
+    - compartment: c
+    - charge: -4
+    - formula: C6H10O12P2
+    - annotation: !!omap
+      - bigg.metabolite: fdp
+      - biocyc: FRUCTOSE-16-DIPHOSPHATE
+      - cas:
+        - 488-69-7
+      - chebi:
+        - CHEBI:32968
+        - CHEBI:49299
+        - CHEBI:42553
+        - CHEBI:32966
+        - CHEBI:37736
+        - CHEBI:28013
+        - CHEBI:32967
+        - CHEBI:41014
+        - CHEBI:22767
+        - CHEBI:10374
+        - CHEBI:40595
+        - CHEBI:40591
+      - kegg.compound:
+        - C05378
+        - C00354
+      - pubchem.substance: '3647'
+      - seed.compound: cpd00290
+      - unipathway.compound: UPC00354
+  - !!omap
+    - id: g3p_c
+    - name: Glyceraldehyde 3-phosphate
+    - compartment: c
+    - charge: -2
+    - formula: C3H5O6P
+    - annotation: !!omap
+      - bigg.metabolite: g3p
+      - cas:
+        - 142-10-9
+      - chebi:
+        - CHEBI:17138
+        - CHEBI:14333
+        - CHEBI:5446
+        - CHEBI:58027
+      - hmdb: HMDB01112
+      - kegg.compound:
+        - C00661
+        - C00118
+      - pubchem.substance: '3930'
+      - seed.compound: cpd00102
+      - unipathway.compound:
+        - UPC00661
+        - UPC00118
+  - !!omap
+    - id: g6p_c
+    - name: D-Glucose 6-phosphate
+    - compartment: c
+    - charge: -2
+    - formula: C6H11O9P
+    - annotation: !!omap
+      - bigg.metabolite: g6p
+      - biocyc:
+        - D-glucose-6-phosphate
+        - GLC-6-P
+      - cas:
+        - 56-73-5
+      - chebi:
+        - CHEBI:10399
+        - CHEBI:22797
+        - CHEBI:41041
+        - CHEBI:17719
+        - CHEBI:4170
+        - CHEBI:61548
+        - CHEBI:58247
+        - CHEBI:12375
+      - hmdb:
+        - HMDB03498
+        - HMDB06793
+        - HMDB01401
+        - HMDB01549
+      - kegg.compound:
+        - C00092
+        - C01172
+      - pubchem.substance: '3392'
+      - reactome: REACT_1629756
+      - seed.compound: cpd00079
+      - unipathway.compound: UPC00092
+  - !!omap
+    - id: glc__D_e
+    - name: D-Glucose
+    - compartment: e
+    - charge: 0
+    - formula: C6H12O6
+    - annotation: !!omap
+      - bigg.metabolite: glc__D
+      - cas:
+        - 50-99-7
+      - kegg.compound: C00031
+      - pubchem.substance: '3333'
+  - !!omap
+    - id: h2o_c
+    - name: H2O
+    - compartment: c
+    - charge: 0
+    - formula: H2O
+    - annotation: !!omap
+      - bigg.metabolite: h2o
+      - biocyc:
+        - WATER
+        - OH
+        - OXONIUM
+      - cas:
+        - 7732-18-5
+      - chebi:
+        - CHEBI:15377
+        - CHEBI:13365
+        - CHEBI:41979
+        - CHEBI:16234
+        - CHEBI:36385
+        - CHEBI:42857
+        - CHEBI:27313
+        - CHEBI:44819
+        - CHEBI:29373
+        - CHEBI:10743
+        - CHEBI:5594
+        - CHEBI:29356
+        - CHEBI:53442
+        - CHEBI:29375
+        - CHEBI:29374
+        - CHEBI:13419
+        - CHEBI:43228
+        - CHEBI:44292
+        - CHEBI:13352
+        - CHEBI:41981
+        - CHEBI:29412
+        - CHEBI:42043
+        - CHEBI:33811
+        - CHEBI:33813
+        - CHEBI:35511
+        - CHEBI:5585
+        - CHEBI:44641
+        - CHEBI:44701
+      - hmdb:
+        - HMDB01039
+        - HMDB02111
+      - kegg.compound:
+        - C01328
+        - C00001
+        - C18714
+        - C18712
+      - kegg.drug:
+        - D00001
+        - D06322
+        - D03703
+      - pubchem.substance: '3303'
+      - reactome:
+        - REACT_947593
+        - REACT_189422
+        - REACT_141343
+        - REACT_113518
+        - REACT_1605715
+        - REACT_109276
+        - REACT_113521
+        - REACT_113519
+        - REACT_2022884
+        - REACT_351603
+        - REACT_29356
+      - seed.compound:
+        - cpd15275
+        - cpd00001
+      - unipathway.compound:
+        - UPC00001
+        - UPC01328
+  - !!omap
+    - id: h2o_e
+    - name: H2O
+    - compartment: e
+    - charge: 0
+    - formula: H2O
+    - annotation: !!omap
+      - bigg.metabolite: h2o
+      - biocyc:
+        - WATER
+        - OH
+        - OXONIUM
+      - cas:
+        - 7732-18-5
+      - chebi:
+        - CHEBI:15377
+        - CHEBI:13365
+        - CHEBI:41979
+        - CHEBI:16234
+        - CHEBI:36385
+        - CHEBI:42857
+        - CHEBI:27313
+        - CHEBI:44819
+        - CHEBI:29373
+        - CHEBI:10743
+        - CHEBI:5594
+        - CHEBI:29356
+        - CHEBI:53442
+        - CHEBI:29375
+        - CHEBI:29374
+        - CHEBI:13419
+        - CHEBI:43228
+        - CHEBI:44292
+        - CHEBI:13352
+        - CHEBI:41981
+        - CHEBI:29412
+        - CHEBI:42043
+        - CHEBI:33811
+        - CHEBI:33813
+        - CHEBI:35511
+        - CHEBI:5585
+        - CHEBI:44641
+        - CHEBI:44701
+      - hmdb:
+        - HMDB01039
+        - HMDB02111
+      - kegg.compound:
+        - C01328
+        - C00001
+        - C18714
+        - C18712
+      - kegg.drug:
+        - D00001
+        - D06322
+        - D03703
+      - pubchem.substance: '3303'
+      - reactome:
+        - REACT_947593
+        - REACT_189422
+        - REACT_141343
+        - REACT_113518
+        - REACT_1605715
+        - REACT_109276
+        - REACT_113521
+        - REACT_113519
+        - REACT_2022884
+        - REACT_351603
+        - REACT_29356
+      - seed.compound:
+        - cpd15275
+        - cpd00001
+      - unipathway.compound:
+        - UPC00001
+        - UPC01328
+  - !!omap
+    - id: h_c
+    - name: H+
+    - compartment: c
+    - charge: 1
+    - formula: H
+    - annotation: !!omap
+      - bigg.metabolite: h
+      - biocyc: PROTON
+      - cas:
+        - 12408-02-5
+      - chebi:
+        - CHEBI:24636
+        - CHEBI:15378
+        - CHEBI:10744
+        - CHEBI:13357
+        - CHEBI:5584
+      - kegg.compound: C00080
+      - pubchem.substance: '3380'
+      - reactome:
+        - REACT_194688
+        - REACT_425978
+        - REACT_193465
+        - REACT_374900
+        - REACT_74722
+        - REACT_425999
+        - REACT_428040
+        - REACT_163953
+        - REACT_372511
+        - REACT_2000349
+        - REACT_70106
+        - REACT_1470067
+        - REACT_113529
+        - REACT_425969
+        - REACT_428548
+        - REACT_156540
+        - REACT_1614597
+        - REACT_351626
+        - REACT_427899
+      - seed.compound: cpd00067
+      - unipathway.compound: UPC00080
+  - !!omap
+    - id: h_e
+    - name: H+
+    - compartment: e
+    - charge: 1
+    - formula: H
+    - annotation: !!omap
+      - bigg.metabolite: h
+      - biocyc: PROTON
+      - cas:
+        - 12408-02-5
+      - chebi:
+        - CHEBI:24636
+        - CHEBI:15378
+        - CHEBI:10744
+        - CHEBI:13357
+        - CHEBI:5584
+      - kegg.compound: C00080
+      - pubchem.substance: '3380'
+      - reactome:
+        - REACT_194688
+        - REACT_425978
+        - REACT_193465
+        - REACT_374900
+        - REACT_74722
+        - REACT_425999
+        - REACT_428040
+        - REACT_163953
+        - REACT_372511
+        - REACT_2000349
+        - REACT_70106
+        - REACT_1470067
+        - REACT_113529
+        - REACT_425969
+        - REACT_428548
+        - REACT_156540
+        - REACT_1614597
+        - REACT_351626
+        - REACT_427899
+      - seed.compound: cpd00067
+      - unipathway.compound: UPC00080
+  - !!omap
+    - id: lac__D_c
+    - name: D-Lactate
+    - compartment: c
+    - charge: -1
+    - formula: C3H5O3
+    - annotation: !!omap
+      - bigg.metabolite: lac__D
+      - biocyc: META:D-LACTATE
+      - chebi:
+        - CHEBI:11001
+        - CHEBI:16004
+        - CHEBI:18684
+        - CHEBI:341
+        - CHEBI:42105
+        - CHEBI:42111
+        - CHEBI:43701
+      - hmdb:
+        - HMDB00171
+        - HMDB01311
+      - kegg.compound: C00256
+      - metanetx.chemical: MNXM285
+      - seed.compound: cpd00221
+  - !!omap
+    - id: lac__D_e
+    - name: D-Lactate
+    - compartment: e
+    - charge: -1
+    - formula: C3H5O3
+    - annotation: !!omap
+      - bigg.metabolite: lac__D
+      - biocyc: META:D-LACTATE
+      - chebi:
+        - CHEBI:11001
+        - CHEBI:16004
+        - CHEBI:18684
+        - CHEBI:341
+        - CHEBI:42105
+        - CHEBI:42111
+        - CHEBI:43701
+      - hmdb:
+        - HMDB00171
+        - HMDB01311
+      - kegg.compound: C00256
+      - metanetx.chemical: MNXM285
+      - seed.compound: cpd00221
+  - !!omap
+    - id: nad_c
+    - name: Nicotinamide adenine dinucleotide
+    - compartment: c
+    - charge: -1
+    - formula: C21H26N7O14P2
+    - annotation: !!omap
+      - bigg.metabolite: nad
+      - biocyc: NAD
+      - cas:
+        - 53-84-9
+      - chebi:
+        - CHEBI:21901
+        - CHEBI:7422
+        - CHEBI:44214
+        - CHEBI:15846
+        - CHEBI:13394
+        - CHEBI:13393
+        - CHEBI:44215
+        - CHEBI:13389
+        - CHEBI:57540
+        - CHEBI:44281
+      - hmdb: HMDB00902
+      - kegg.compound: C00003
+      - kegg.drug: D00002
+      - pubchem.substance: '3305'
+      - reactome:
+        - REACT_192307
+        - REACT_29360
+        - REACT_427523
+        - REACT_194653
+        - REACT_113526
+      - seed.compound: cpd00003
+      - unipathway.compound: UPC00003
+  - !!omap
+    - id: nadh_c
+    - name: Nicotinamide adenine dinucleotide - reduced
+    - compartment: c
+    - charge: -2
+    - formula: C21H27N7O14P2
+    - annotation: !!omap
+      - bigg.metabolite: nadh
+      - biocyc: NADH
+      - cas:
+        - 58-68-4
+      - chebi:
+        - CHEBI:13395
+        - CHEBI:21902
+        - CHEBI:16908
+        - CHEBI:7423
+        - CHEBI:44216
+        - CHEBI:57945
+        - CHEBI:13396
+      - hmdb: HMDB01487
+      - kegg.compound: C00004
+      - pubchem.substance: '3306'
+      - reactome:
+        - REACT_192305
+        - REACT_73473
+        - REACT_194697
+        - REACT_29362
+      - seed.compound: cpd00004
+      - unipathway.compound: UPC00004
+  - !!omap
+    - id: pep_c
+    - name: Phosphoenolpyruvate
+    - compartment: c
+    - charge: -3
+    - formula: C3H2O6P
+    - annotation: !!omap
+      - bigg.metabolite: pep
+      - biocyc: PHOSPHO-ENOL-PYRUVATE
+      - cas:
+        - 138-08-9
+      - chebi:
+        - CHEBI:44897
+        - CHEBI:44894
+        - CHEBI:14812
+        - CHEBI:8147
+        - CHEBI:26055
+        - CHEBI:26054
+        - CHEBI:58702
+        - CHEBI:18021
+      - hmdb: HMDB00263
+      - kegg.compound: C00074
+      - pubchem.substance: '3374'
+      - reactome:
+        - REACT_29492
+        - REACT_372364
+      - seed.compound: cpd00061
+      - unipathway.compound: UPC00074
+  - !!omap
+    - id: pi_c
+    - name: Phosphate
+    - compartment: c
+    - charge: -2
+    - formula: HO4P
+    - annotation: !!omap
+      - bigg.metabolite: pi
+      - biocyc:
+        - Pi
+        - PHOSPHATE-GROUP
+        - CPD0-1421
+      - cas:
+        - 14265-44-2
+      - chebi:
+        - CHEBI:37583
+        - CHEBI:7793
+        - CHEBI:37585
+        - CHEBI:34683
+        - CHEBI:14791
+        - CHEBI:34855
+        - CHEBI:29137
+        - CHEBI:29139
+        - CHEBI:63036
+        - CHEBI:26020
+        - CHEBI:39739
+        - CHEBI:32597
+        - CHEBI:32596
+        - CHEBI:43474
+        - CHEBI:63051
+        - CHEBI:43470
+        - CHEBI:9679
+        - CHEBI:35433
+        - CHEBI:4496
+        - CHEBI:45024
+        - CHEBI:18367
+        - CHEBI:26078
+        - CHEBI:39745
+        - CHEBI:24838
+      - hmdb: HMDB02142
+      - kegg.compound:
+        - C13556
+        - C13558
+        - C00009
+      - kegg.drug: D05467
+      - pubchem.substance: '3311'
+      - reactome:
+        - REACT_947590
+        - REACT_109277
+        - REACT_113548
+        - REACT_2255331
+        - REACT_29372
+        - REACT_113550
+        - REACT_113551
+      - seed.compound:
+        - cpd09464
+        - cpd09463
+        - cpd00009
+      - unipathway.compound: UPC00009
+  - !!omap
+    - id: pi_e
+    - name: Phosphate
+    - compartment: e
+    - charge: -2
+    - formula: HO4P
+    - annotation: !!omap
+      - bigg.metabolite: pi
+      - biocyc:
+        - Pi
+        - PHOSPHATE-GROUP
+        - CPD0-1421
+      - cas:
+        - 14265-44-2
+      - chebi:
+        - CHEBI:37583
+        - CHEBI:7793
+        - CHEBI:37585
+        - CHEBI:34683
+        - CHEBI:14791
+        - CHEBI:34855
+        - CHEBI:29137
+        - CHEBI:29139
+        - CHEBI:63036
+        - CHEBI:26020
+        - CHEBI:39739
+        - CHEBI:32597
+        - CHEBI:32596
+        - CHEBI:43474
+        - CHEBI:63051
+        - CHEBI:43470
+        - CHEBI:9679
+        - CHEBI:35433
+        - CHEBI:4496
+        - CHEBI:45024
+        - CHEBI:18367
+        - CHEBI:26078
+        - CHEBI:39745
+        - CHEBI:24838
+      - hmdb: HMDB02142
+      - kegg.compound:
+        - C13556
+        - C13558
+        - C00009
+      - kegg.drug: D05467
+      - pubchem.substance: '3311'
+      - reactome:
+        - REACT_947590
+        - REACT_109277
+        - REACT_113548
+        - REACT_2255331
+        - REACT_29372
+        - REACT_113550
+        - REACT_113551
+      - seed.compound:
+        - cpd09464
+        - cpd09463
+        - cpd00009
+      - unipathway.compound: UPC00009
+  - !!omap
+    - id: pyr_c
+    - name: Pyruvate
+    - compartment: c
+    - charge: -1
+    - formula: C3H3O3
+    - annotation: !!omap
+      - bigg.metabolite: pyr
+      - biocyc: PYRUVATE
+      - cas:
+        - 127-17-3
+      - chebi:
+        - CHEBI:15361
+        - CHEBI:14987
+        - CHEBI:8685
+        - CHEBI:32816
+        - CHEBI:45253
+        - CHEBI:26466
+        - CHEBI:26462
+      - hmdb: HMDB00243
+      - kegg.compound: C00022
+      - lipidmaps: LMFA01060077
+      - pubchem.substance: '3324'
+      - reactome:
+        - REACT_113557
+        - REACT_389680
+        - REACT_29398
+      - seed.compound: cpd00020
+      - unipathway.compound: UPC00022
+- reactions:
+  - !!omap
+    - id: ATPM
+    - name: ATP maintenance requirement
+    - metabolites: !!omap
+      - adp_c: 1.0
+      - atp_c: -1.0
+      - h2o_c: -1.0
+      - h_c: 1.0
+      - pi_c: 1.0
+    - lower_bound: 8.39
+    - upper_bound: 1000.0
+    - gene_reaction_rule: ''
+    - objective_coefficient: 1.0
+    - annotation: !!omap
+      - bigg.reaction: ATPM
+  - !!omap
+    - id: D_LACt2
+    - name: ''
+    - metabolites: !!omap []
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: ''
+  - !!omap
+    - id: ENO
+    - name: enolase
+    - metabolites: !!omap
+      - 2pg_c: -1.0
+      - h2o_c: 1.0
+      - pep_c: 1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b2779
+    - annotation: !!omap
+      - bigg.reaction: ENO
+  - !!omap
+    - id: EX_glc__D_e
+    - name: D-Glucose exchange
+    - metabolites: !!omap
+      - glc__D_e: -1.0
+    - lower_bound: -10.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: ''
+    - annotation: !!omap
+      - bigg.reaction: glc
+      - sbo: SBO:0000627
+  - !!omap
+    - id: EX_h_e
+    - name: H+ exchange
+    - metabolites: !!omap
+      - h_e: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: ''
+    - annotation: !!omap
+      - bigg.reaction: h
+      - sbo: SBO:0000627
+  - !!omap
+    - id: EX_lac__D_e
+    - name: D-lactate exchange
+    - metabolites: !!omap
+      - lac__D_e: -1.0
+    - lower_bound: 0.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: ''
+    - annotation: !!omap
+      - bigg.reaction: lac__D
+      - sbo: SBO:0000627
+  - !!omap
+    - id: FBA
+    - name: fructose-bisphosphate aldolase
+    - metabolites: !!omap
+      - dhap_c: 1.0
+      - fdp_c: -1.0
+      - g3p_c: 1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b1773 or b2097 or b2925
+    - annotation: !!omap
+      - bigg.reaction: FBA
+  - !!omap
+    - id: GAPD
+    - name: glyceraldehyde-3-phosphate dehydrogenase
+    - metabolites: !!omap
+      - 13dpg_c: 1.0
+      - g3p_c: -1.0
+      - h_c: 1.0
+      - nad_c: -1.0
+      - nadh_c: 1.0
+      - pi_c: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b1779
+    - annotation: !!omap
+      - bigg.reaction: GAPD
+  - !!omap
+    - id: GLCpts
+    - name: D-glucose transport via PEP:Pyr PTS
+    - metabolites: !!omap
+      - g6p_c: 1.0
+      - glc__D_e: -1.0
+      - pep_c: -1.0
+      - pyr_c: 1.0
+    - lower_bound: 0.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: (b2415 and b2417 and b1101 and b2416) or (b2415 and b2417
+        and b1621 and b2416) or (b2415 and b1818 and b1817 and b1819 and b2416)
+    - annotation: !!omap
+      - bigg.reaction: GLCpts
+  - !!omap
+    - id: H2Ot
+    - name: R H2O transport via - diffusion
+    - metabolites: !!omap
+      - h2o_c: 1.0
+      - h2o_e: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b0875 or s0001
+    - annotation: !!omap
+      - bigg.reaction: H2Ot
+  - !!omap
+    - id: LDH_D
+    - name: D-lactate dehydrogenase
+    - metabolites: !!omap
+      - h_c: 1.0
+      - lac__D_c: -1.0
+      - nad_c: -1.0
+      - nadh_c: 1.0
+      - pyr_c: 1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b2133 or b1380
+    - annotation: !!omap
+      - bigg.reaction: LDH_D
+      - biocyc: META:DLACTDEHYDROGNAD-RXN
+      - ec-code: 1.1.1.28
+      - kegg.reaction: R00704
+      - metanetx.reaction: MNXR101037
+      - rhea:
+        - '16369'
+        - '16370'
+        - '16371'
+        - '16372'
+      - sbo: SBO:0000375
+  - !!omap
+    - id: PFK
+    - name: phosphofructokinase
+    - metabolites: !!omap
+      - adp_c: 1.0
+      - atp_c: -1.0
+      - f6p_c: -1.0
+      - fdp_c: 1.0
+      - h_c: 1.0
+    - lower_bound: 0.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b3916 or b1723
+    - objective_coefficient: 1.0
+    - annotation: !!omap
+      - bigg.reaction: PFK
+  - !!omap
+    - id: PGI
+    - name: glucose-6-phosphate isomerase
+    - metabolites: !!omap
+      - f6p_c: 1.0
+      - g6p_c: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b4025
+    - annotation: !!omap
+      - bigg.reaction: PGI
+  - !!omap
+    - id: PGK
+    - name: phosphoglycerate kinase
+    - metabolites: !!omap
+      - 13dpg_c: 1.0
+      - 3pg_c: -1.0
+      - adp_c: 1.0
+      - atp_c: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b2926
+    - annotation: !!omap
+      - bigg.reaction: PGK
+  - !!omap
+    - id: PGM
+    - name: phosphoglycerate mutase
+    - metabolites: !!omap
+      - 2pg_c: -1.0
+      - 3pg_c: 1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b4395 or b3612 or b0755
+    - annotation: !!omap
+      - bigg.reaction: PGM
+  - !!omap
+    - id: PIt2r
+    - name: R phosphate reversible transport via - symport
+    - metabolites: !!omap
+      - h_c: 1.0
+      - h_e: -1.0
+      - pi_c: 1.0
+      - pi_e: -1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b2987 or b3493
+    - annotation: !!omap
+      - bigg.reaction: PIt2r
+  - !!omap
+    - id: PYK
+    - name: pyruvate kinase
+    - metabolites: !!omap
+      - adp_c: -1.0
+      - atp_c: 1.0
+      - h_c: -1.0
+      - pep_c: -1.0
+      - pyr_c: 1.0
+    - lower_bound: 0.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b1854 or b1676
+    - annotation: !!omap
+      - bigg.reaction: PYK
+  - !!omap
+    - id: TPI
+    - name: triose-phosphate isomerase
+    - metabolites: !!omap
+      - dhap_c: -1.0
+      - g3p_c: 1.0
+    - lower_bound: -1000.0
+    - upper_bound: 1000.0
+    - gene_reaction_rule: b3919
+    - annotation: !!omap
+      - bigg.reaction: TPI
+- genes:
+  - !!omap
+    - id: b0755
+    - name: gpmA
+  - !!omap
+    - id: b0875
+    - name: aqpZ
+  - !!omap
+    - id: b1101
+    - name: ptsG
+  - !!omap
+    - id: b1380
+    - name: ldhA
+  - !!omap
+    - id: b1621
+    - name: malX
+  - !!omap
+    - id: b1676
+    - name: pykF
+    - annotation: !!omap
+      - ncbigi:
+        - GI:1208453
+        - GI:1652654
+  - !!omap
+    - id: b1723
+    - name: pfkB
+  - !!omap
+    - id: b1773
+    - name: ydjI
+  - !!omap
+    - id: b1779
+    - name: gapA
+  - !!omap
+    - id: b1817
+    - name: manX
+  - !!omap
+    - id: b1818
+    - name: manY
+  - !!omap
+    - id: b1819
+    - name: manZ
+  - !!omap
+    - id: b1854
+    - name: pykA
+  - !!omap
+    - id: b2097
+    - name: fbaB
+  - !!omap
+    - id: b2133
+    - name: dld
+  - !!omap
+    - id: b2415
+    - name: ptsH
+  - !!omap
+    - id: b2416
+    - name: ptsI
+  - !!omap
+    - id: b2417
+    - name: crr
+  - !!omap
+    - id: b2779
+    - name: eno
+    - annotation: !!omap
+      - ncbigi: GI:1653839
+  - !!omap
+    - id: b2925
+    - name: fbaA
+  - !!omap
+    - id: b2926
+    - name: pgk
+    - annotation: !!omap
+      - ncbigi: GI:1653609
+  - !!omap
+    - id: b2987
+    - name: pitB
+  - !!omap
+    - id: b3493
+    - name: pitA
+  - !!omap
+    - id: b3612
+    - name: gpmM
+  - !!omap
+    - id: b3916
+    - name: pfkA
+    - annotation: !!omap
+      - ncbigi:
+        - GI:1006614
+        - GI:1651919
+  - !!omap
+    - id: b3919
+    - name: tpiA
+  - !!omap
+    - id: b4025
+    - name: pgi
+    - annotation: !!omap
+      - ncbigi: GI:1653253
+  - !!omap
+    - id: b4395
+    - name: ytjC
+  - !!omap
+    - id: s0001
+    - name: G_s0001
+- id: mini_textbook
+- compartments: !!omap
+  - c: cytosol
+  - e: extracellular
+- version: '1.2'
diff --git a/src/cobra/test/data/mini_cobra.xml b/tests/data/mini_cobra.xml
similarity index 100%
rename from src/cobra/test/data/mini_cobra.xml
rename to tests/data/mini_cobra.xml
diff --git a/src/cobra/test/data/mini_fbc1.xml b/tests/data/mini_fbc1.xml
similarity index 100%
rename from src/cobra/test/data/mini_fbc1.xml
rename to tests/data/mini_fbc1.xml
diff --git a/src/cobra/test/data/mini_fbc2.xml b/tests/data/mini_fbc2.xml
similarity index 100%
rename from src/cobra/test/data/mini_fbc2.xml
rename to tests/data/mini_fbc2.xml
diff --git a/src/cobra/test/data/mini_fbc2.xml.bz2 b/tests/data/mini_fbc2.xml.bz2
similarity index 100%
rename from src/cobra/test/data/mini_fbc2.xml.bz2
rename to tests/data/mini_fbc2.xml.bz2
diff --git a/src/cobra/test/data/mini_fbc2.xml.gz b/tests/data/mini_fbc2.xml.gz
similarity index 100%
rename from src/cobra/test/data/mini_fbc2.xml.gz
rename to tests/data/mini_fbc2.xml.gz
diff --git a/src/cobra/test/data/mini_wrong_key_caps.mat b/tests/data/mini_wrong_key_caps.mat
similarity index 100%
rename from src/cobra/test/data/mini_wrong_key_caps.mat
rename to tests/data/mini_wrong_key_caps.mat
diff --git a/src/cobra/test/data/raven.mat b/tests/data/raven.mat
similarity index 100%
rename from src/cobra/test/data/raven.mat
rename to tests/data/raven.mat
diff --git a/src/cobra/test/data/raven.pickle b/tests/data/raven.pickle
similarity index 100%
rename from src/cobra/test/data/raven.pickle
rename to tests/data/raven.pickle
diff --git a/src/cobra/test/data/salmonella.genes b/tests/data/salmonella.genes
similarity index 100%
rename from src/cobra/test/data/salmonella.genes
rename to tests/data/salmonella.genes
diff --git a/src/cobra/test/data/salmonella.media b/tests/data/salmonella.media
similarity index 100%
rename from src/cobra/test/data/salmonella.media
rename to tests/data/salmonella.media
diff --git a/src/cobra/test/data/salmonella.pickle b/tests/data/salmonella.pickle
similarity index 100%
rename from src/cobra/test/data/salmonella.pickle
rename to tests/data/salmonella.pickle
diff --git a/src/cobra/test/data/salmonella.xml b/tests/data/salmonella.xml
similarity index 100%
rename from src/cobra/test/data/salmonella.xml
rename to tests/data/salmonella.xml
diff --git a/tests/data/textbook.xml.gz b/tests/data/textbook.xml.gz
new file mode 100644
index 000000000..a5d1fbc51
Binary files /dev/null and b/tests/data/textbook.xml.gz differ
diff --git a/src/cobra/test/data/textbook_fva.json b/tests/data/textbook_fva.json
similarity index 100%
rename from src/cobra/test/data/textbook_fva.json
rename to tests/data/textbook_fva.json
diff --git a/src/cobra/test/data/textbook_pfba_fva.json b/tests/data/textbook_pfba_fva.json
similarity index 100%
rename from src/cobra/test/data/textbook_pfba_fva.json
rename to tests/data/textbook_pfba_fva.json
diff --git a/src/cobra/test/data/textbook_solution.pickle b/tests/data/textbook_solution.pickle
similarity index 100%
rename from src/cobra/test/data/textbook_solution.pickle
rename to tests/data/textbook_solution.pickle
diff --git a/src/cobra/test/data/update_pickles.py b/tests/data/update_pickles.py
similarity index 100%
rename from src/cobra/test/data/update_pickles.py
rename to tests/data/update_pickles.py
diff --git a/src/cobra/test/data/valid_annotation_format.json b/tests/data/valid_annotation_format.json
similarity index 100%
rename from src/cobra/test/data/valid_annotation_format.json
rename to tests/data/valid_annotation_format.json
diff --git a/src/cobra/test/data/valid_annotation_output.xml b/tests/data/valid_annotation_output.xml
similarity index 100%
rename from src/cobra/test/data/valid_annotation_output.xml
rename to tests/data/valid_annotation_output.xml
diff --git a/src/cobra/test/data/validation.xml b/tests/data/validation.xml
similarity index 100%
rename from src/cobra/test/data/validation.xml
rename to tests/data/validation.xml
diff --git a/src/cobra/test/test_core/conftest.py b/tests/test_core/conftest.py
similarity index 100%
rename from src/cobra/test/test_core/conftest.py
rename to tests/test_core/conftest.py
diff --git a/src/cobra/test/test_core/test_configuration.py b/tests/test_core/test_configuration.py
similarity index 100%
rename from src/cobra/test/test_core/test_configuration.py
rename to tests/test_core/test_configuration.py
diff --git a/src/cobra/test/test_core/test_core_reaction.py b/tests/test_core/test_core_reaction.py
similarity index 100%
rename from src/cobra/test/test_core/test_core_reaction.py
rename to tests/test_core/test_core_reaction.py
diff --git a/src/cobra/test/test_core/test_dictlist.py b/tests/test_core/test_dictlist.py
similarity index 100%
rename from src/cobra/test/test_core/test_dictlist.py
rename to tests/test_core/test_dictlist.py
diff --git a/src/cobra/test/test_core/test_gene.py b/tests/test_core/test_gene.py
similarity index 100%
rename from src/cobra/test/test_core/test_gene.py
rename to tests/test_core/test_gene.py
diff --git a/src/cobra/test/test_core/test_gpr.py b/tests/test_core/test_gpr.py
similarity index 100%
rename from src/cobra/test/test_core/test_gpr.py
rename to tests/test_core/test_gpr.py
diff --git a/src/cobra/test/test_core/test_group.py b/tests/test_core/test_group.py
similarity index 100%
rename from src/cobra/test/test_core/test_group.py
rename to tests/test_core/test_group.py
diff --git a/src/cobra/test/test_core/test_metabolite.py b/tests/test_core/test_metabolite.py
similarity index 100%
rename from src/cobra/test/test_core/test_metabolite.py
rename to tests/test_core/test_metabolite.py
diff --git a/src/cobra/test/test_core/test_model.py b/tests/test_core/test_model.py
similarity index 100%
rename from src/cobra/test/test_core/test_model.py
rename to tests/test_core/test_model.py
diff --git a/src/cobra/test/test_core/test_solution.py b/tests/test_core/test_solution.py
similarity index 100%
rename from src/cobra/test/test_core/test_solution.py
rename to tests/test_core/test_solution.py
diff --git a/src/cobra/test/test_flux_analysis/conftest.py b/tests/test_flux_analysis/conftest.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/conftest.py
rename to tests/test_flux_analysis/conftest.py
diff --git a/src/cobra/test/test_flux_analysis/test_deletion.py b/tests/test_flux_analysis/test_deletion.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_deletion.py
rename to tests/test_flux_analysis/test_deletion.py
diff --git a/src/cobra/test/test_flux_analysis/test_fastcc.py b/tests/test_flux_analysis/test_fastcc.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_fastcc.py
rename to tests/test_flux_analysis/test_fastcc.py
diff --git a/src/cobra/test/test_flux_analysis/test_gapfilling.py b/tests/test_flux_analysis/test_gapfilling.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_gapfilling.py
rename to tests/test_flux_analysis/test_gapfilling.py
diff --git a/src/cobra/test/test_flux_analysis/test_geometric.py b/tests/test_flux_analysis/test_geometric.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_geometric.py
rename to tests/test_flux_analysis/test_geometric.py
diff --git a/src/cobra/test/test_flux_analysis/test_helpers.py b/tests/test_flux_analysis/test_helpers.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_helpers.py
rename to tests/test_flux_analysis/test_helpers.py
diff --git a/src/cobra/test/test_flux_analysis/test_loopless.py b/tests/test_flux_analysis/test_loopless.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_loopless.py
rename to tests/test_flux_analysis/test_loopless.py
diff --git a/src/cobra/test/test_flux_analysis/test_moma.py b/tests/test_flux_analysis/test_moma.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_moma.py
rename to tests/test_flux_analysis/test_moma.py
diff --git a/src/cobra/test/test_flux_analysis/test_parsimonious.py b/tests/test_flux_analysis/test_parsimonious.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_parsimonious.py
rename to tests/test_flux_analysis/test_parsimonious.py
diff --git a/src/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py b/tests/test_flux_analysis/test_phenotype_phase_plane.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py
rename to tests/test_flux_analysis/test_phenotype_phase_plane.py
diff --git a/src/cobra/test/test_flux_analysis/test_reaction.py b/tests/test_flux_analysis/test_reaction.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_reaction.py
rename to tests/test_flux_analysis/test_reaction.py
diff --git a/src/cobra/test/test_flux_analysis/test_room.py b/tests/test_flux_analysis/test_room.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_room.py
rename to tests/test_flux_analysis/test_room.py
diff --git a/src/cobra/test/test_flux_analysis/test_variability.py b/tests/test_flux_analysis/test_variability.py
similarity index 100%
rename from src/cobra/test/test_flux_analysis/test_variability.py
rename to tests/test_flux_analysis/test_variability.py
diff --git a/tests/test_io/conftest.py b/tests/test_io/conftest.py
new file mode 100644
index 000000000..5fc4be2d1
--- /dev/null
+++ b/tests/test_io/conftest.py
@@ -0,0 +1,136 @@
+"""Contains module level fixtures and utility functions."""
+
+from pathlib import Path
+from pickle import load
+from typing import Callable
+
+import pytest
+from optlang.interface import OPTIMAL
+
+from cobra import Model
+
+
+@pytest.fixture(scope="module")
+def mini_model(data_directory: Path) -> Model:
+    """Fixture for mini model."""
+    with (data_directory / "mini.pickle").open(mode="rb") as infile:
+        return load(infile)
+
+
+@pytest.fixture
+def compare_models() -> Callable:
+    """Compare models as a fixture.
+
+    Returns
+    -------
+    _compare_models: Callable
+        A function that will assert that the models are identical.
+
+    """
+
+    def _compare_models(model_1: Model, model_2: Model) -> None:
+        """Compare two models (only for testing purposes).
+
+        Parameters
+        ----------
+        model_1: Model
+            First model to compare.
+
+        model_2: Model
+            Second model to compare.
+
+        This function does not return anything, and does a series of asserts on the
+        two models. If the models are not identical, the asserts, and the test that
+        called them will fail.
+
+        """
+        assert len(model_1.reactions) == len(model_2.reactions)
+        assert len(model_1.metabolites) == len(model_2.metabolites)
+        assert len(model_1.genes) == len(model_2.genes)
+        assert model_1.objective.direction == model_2.objective.direction
+
+        # check Reaction attributes
+        for attr in (
+            "id",
+            "name",
+            "lower_bound",
+            "upper_bound",
+            "objective_coefficient",
+            "gene_reaction_rule",
+        ):
+            assert getattr(model_1.reactions[0], attr) == getattr(
+                model_2.reactions[0], attr
+            )
+            assert getattr(model_1.reactions[5], attr) == getattr(
+                model_2.reactions[5], attr
+            )
+            assert getattr(model_1.reactions[-1], attr) == getattr(
+                model_2.reactions[-1], attr
+            )
+
+        # check Metabolite attributes
+        for attr in ("id", "name", "compartment", "formula", "charge"):
+            assert getattr(model_1.metabolites[0], attr) == getattr(
+                model_2.metabolites[0], attr
+            )
+            assert getattr(model_1.metabolites[5], attr) == getattr(
+                model_2.metabolites[5], attr
+            )
+            assert getattr(model_1.metabolites[-1], attr) == getattr(
+                model_2.metabolites[-1], attr
+            )
+            assert len(model_1.reactions[0].metabolites) == len(
+                model_2.reactions[0].metabolites
+            )
+        # TODO: either relax gene attribute checking or fix models for testing.
+        # check Gene attributes
+        # for attr in ("id", "name"):
+        #     assert getattr(model_1.genes[0], attr) == getattr(model_2.genes[0],
+        #                                                       attr)
+        #     assert getattr(model_1.genes[10], attr) == getattr(model_2.genes[10],
+        #                                                        attr)
+        #     assert getattr(model_1.genes[-1], attr) == getattr(model_2.genes[-1],
+        #                                                        attr)
+
+        assert len(model_1.reactions[8].metabolites) == len(
+            model_2.reactions[8].metabolites
+        )
+        assert len(model_1.reactions[-1].metabolites) == len(
+            model_2.reactions[-1].metabolites
+        )
+        assert len(model_1.genes) == len(model_2.genes)
+
+        # ensure they have the same solution max
+        solution_1 = model_1.optimize()
+        solution_2 = model_2.optimize()
+        if solution_1.status == OPTIMAL and solution_2.status == OPTIMAL:
+            assert abs(
+                solution_1.objective_value - solution_2.objective_value
+            ) == pytest.approx(0.0)
+        else:
+            assert solution_1.status == solution_2.status
+
+        # ensure the references are correct
+        # metabolite -> model reference
+        assert model_1.metabolites[0]._model is model_1
+        assert model_2.metabolites[0]._model is model_2
+
+        # reaction -> model reference
+        assert model_1.reactions[0]._model is model_1
+        assert model_2.reactions[0]._model is model_2
+
+        # gene -> model reference
+        if model_1.genes:
+            assert model_1.genes[0]._model is model_1
+            assert model_2.genes[0]._model is model_2
+
+        # extra comparisons
+        # assert model_1.compartments == model_2.compartments
+        # assert dict(model_1.metabolites[4].annotation) == dict(
+        #     model_2.metabolites[4].annotation)
+        # assert dict(model_1.reactions[4].annotation) == dict(
+        #     model_2.reactions[4].annotation)
+        # assert dict(model_1.genes[5].annotation) == dict(
+        #     model_2.genes[5].annotation)
+
+    return _compare_models
diff --git a/src/cobra/test/test_io/test_annotation.py b/tests/test_io/test_annotation.py
similarity index 100%
rename from src/cobra/test/test_io/test_annotation.py
rename to tests/test_io/test_annotation.py
diff --git a/src/cobra/test/test_io/test_annotation_format.py b/tests/test_io/test_annotation_format.py
similarity index 98%
rename from src/cobra/test/test_io/test_annotation_format.py
rename to tests/test_io/test_annotation_format.py
index 6e87a2fd3..74b49bdcf 100644
--- a/src/cobra/test/test_io/test_annotation_format.py
+++ b/tests/test_io/test_annotation_format.py
@@ -21,7 +21,7 @@ def test_load_json_model_valid(data_directory, tmp_path):
 
 
 def test_load_json_model_invalid(data_directory):
-    """Test that loading an invalid annotation from JSON raises TypeError"""
+    """Test that loading an invalid annotation from JSON raises TypeError."""
     path = join(data_directory, "invalid_annotation_format.json")
     with pytest.raises(TypeError):
         model = load_json_model(path)
diff --git a/src/cobra/test/test_io/test_io_order.py b/tests/test_io/test_io_order.py
similarity index 94%
rename from src/cobra/test/test_io/test_io_order.py
rename to tests/test_io/test_io_order.py
index 82bcc7c07..5703736ce 100644
--- a/src/cobra/test/test_io/test_io_order.py
+++ b/tests/test_io/test_io_order.py
@@ -17,8 +17,8 @@
 
 
 @pytest.fixture(scope="module")
-def tmp_path(tmpdir_factory):
-    return str(tmpdir_factory.mktemp("model_order"))
+def tmp_path_order(tmp_path_factory):
+    return str(tmp_path_factory.mktemp("model_order"))
 
 
 @pytest.fixture(scope="module")
@@ -86,10 +86,10 @@ def get_ids(iterable):
         ("load_yaml_model", "save_yaml_model", ".yml"),
     ],
 )
-def test_io_order(attribute, read, write, ext, template, tmp_path):
+def test_io_order(attribute, read, write, ext, template, tmp_path_order):
     read = getattr(cio, read)
     write = getattr(cio, write)
-    filename = join(tmp_path, "template" + ext)
+    filename = join(tmp_path_order, "template" + ext)
     write(template, filename)
     model = read(filename)
     model_elements = get_ids(getattr(model, attribute))
diff --git a/src/cobra/test/test_io/test_json.py b/tests/test_io/test_json.py
similarity index 65%
rename from src/cobra/test/test_io/test_json.py
rename to tests/test_io/test_json.py
index 983b45b9a..866a8f5b1 100644
--- a/src/cobra/test/test_io/test_json.py
+++ b/tests/test_io/test_json.py
@@ -2,64 +2,66 @@
 
 import json
 from os.path import join
-from typing import Any, Dict, Union
+from pathlib import Path
+from typing import Any, Callable, Dict, Union
 
 import pytest
-from importlib_resources import open_text
+from importlib_resources import files
 
 from cobra import Model
 from cobra import io as cio
-from cobra.test.test_io.conftest import compare_models
 
 
 @pytest.fixture(scope="module")
 def json_schema_v1() -> Dict[str, Union[str, bool, Any]]:
     """Fixture for cobra JSON-schema."""
-    with open_text(cio, "schema_v1.json") as handle:
+    with files(cio).joinpath("schema_v1.json").open("r") as handle:
         schema_v1 = json.load(handle)
     return schema_v1
 
 
 def test_validate_json(
-    data_directory: str, json_schema_v1: Dict[str, Union[str, bool, Any]]
+    data_directory: Path, json_schema_v1: Dict[str, Union[str, bool, Any]]
 ) -> None:
     """Validate file according to JSON-schema."""
     jsonschema = pytest.importorskip("jsonschema")
-    with open(join(data_directory, "mini.json"), "r", encoding="utf-8") as infile:
+    with open(data_directory.joinpath("mini.json"), "r", encoding="utf-8") as infile:
         loaded = json.load(infile)
     assert jsonschema.validate(loaded, json_schema_v1) is None
 
 
-def test_load_json_model(data_directory: str, mini_model: Model) -> None:
+def test_load_json_model(
+    compare_models: Callable, data_directory: Path, mini_model: Model
+) -> None:
     """Test the reading of JSON model."""
-    json_model = cio.load_json_model(join(data_directory, "mini.json"))
+    json_model = cio.load_json_model(data_directory / "mini.json")
     assert compare_models(mini_model, json_model) is None
 
 
 def test_save_json_model(
-    tmpdir: str,
+    tmp_path: Path,
     mini_model: Model,
     json_schema_v1: Dict[str, Union[str, bool, Any]],
 ) -> None:
     """Test the writing of JSON model."""
     jsonschema = pytest.importorskip("jsonschema")
-    output_file = tmpdir.join("mini.json")
-    cio.save_json_model(mini_model, output_file.strpath, pretty=True)
+    output_file = tmp_path.joinpath("mini.json")
+    cio.save_json_model(mini_model, output_file, pretty=True)
     # validate against JSONSchema
     with open(str(output_file), "r") as infile:
         loaded = json.load(infile)
     assert jsonschema.validate(loaded, json_schema_v1) is None
 
 
-def test_reaction_bounds_json(data_directory: str, tmp_path: str) -> None:
+def test_reaction_bounds_json(data_directory: Path, tmp_path: Path) -> None:
     """Test reading and writing of model with inf bounds in JSON."""
     # Path to XML file with INF bounds
     path_to_xml_inf_file = join(data_directory, "fbc_ex1.xml")
     model_xml_inf = cio.read_sbml_model(path_to_xml_inf_file)
-    path_to_output = join(str(tmp_path), "fbc_ex1_json.json")
+    path_to_output = tmp_path.joinpath("fbc_ex1_json.json")
     # Saving model with inf bounds in json form without error
     cio.save_json_model(model_xml_inf, path_to_output)
     # Path to JSON file with INF bounds
-    path_to_JSON_inf_file = join(data_directory, "JSON_with_inf_bounds.json")
+    path_to_JSON_inf_file = data_directory.joinpath("JSON_with_inf_bounds.json")
     model_json_inf = cio.load_json_model(path_to_JSON_inf_file)
     assert model_json_inf.reactions[0].upper_bound == float("inf")
diff --git a/src/cobra/test/test_io/test_mat.py b/tests/test_io/test_mat.py
similarity index 88%
rename from src/cobra/test/test_io/test_mat.py
rename to tests/test_io/test_mat.py
index 462af4e46..b6d7594e5 100644
--- a/src/cobra/test/test_io/test_mat.py
+++ b/tests/test_io/test_mat.py
@@ -1,13 +1,13 @@
 """Test functionalities of I/O in MATLAB (.mat) format."""
 
 from os.path import join
+from pathlib import Path
 from pickle import load
-from typing import TYPE_CHECKING
+from typing import TYPE_CHECKING, Callable
 
 import pytest
 
 from cobra import io
-from cobra.test.test_io.conftest import compare_models
 
 
 try:
@@ -17,7 +17,6 @@
 
 
 if TYPE_CHECKING:
-    import py.path
 
     from cobra import Model
 
@@ -37,7 +36,10 @@ def raven_model(data_directory: str) -> "Model":
 #                            "raven.mat")])
 # TODO: wait for pytest.fixture_request() to get approved
 def test_load_matlab_model(
-    data_directory: str, mini_model: "Model", raven_model: "Model"
+    compare_models: Callable,
+    data_directory: Path,
+    mini_model: "Model",
+    raven_model: "Model",
 ) -> None:
     """Test the reading of MAT model."""
     mini_mat_model = io.load_matlab_model(join(data_directory, "mini.mat"))
@@ -55,24 +57,24 @@ def test_load_matlab_model(
 #                            "raven.mat")])
 # TODO: wait for pytest.fixture_request() to get approved
 def test_save_matlab_model(
-    tmpdir: "py.path.local", mini_model: "Model", raven_model: "Model"
+    tmp_path: Path, mini_model: "Model", raven_model: "Model"
 ) -> None:
     """Test the writing of MAT model."""
-    mini_output_file = tmpdir.join("mini.mat")
-    raven_output_file = tmpdir.join("raven.mat")
+    mini_output_file = tmp_path.joinpath("mini.mat")
+    raven_output_file = tmp_path.joinpath("raven.mat")
     # scipy.io.savemat() doesn't support anything other than
     # str or file-stream object, hence the str conversion
     io.save_matlab_model(mini_model, str(mini_output_file))
     io.save_matlab_model(raven_model, str(raven_output_file))
-    assert mini_output_file.check()
-    assert raven_output_file.check()
+    assert mini_output_file.exists()
+    assert raven_output_file.exists()
 
 
 @pytest.mark.skipif(scipy is None, reason="scipy unavailable")
-def test_large_bounds(tmpdir: "py.path.local", model: "Model") -> None:
+def test_large_bounds(tmp_path: Path, model: "Model") -> None:
     """Verify that mat bounds don't get broken by the config defaults."""
     model.reactions[0].bounds = -1e6, 1e6
-    filepath = str(tmpdir.join("model.mat"))
+    filepath = str(tmp_path.joinpath("model.mat"))
     io.save_matlab_model(model, filepath)
     read = io.load_matlab_model(filepath)
     assert read.reactions[0].bounds == (-1e6, 1e6)
@@ -80,13 +82,13 @@ def test_large_bounds(tmpdir: "py.path.local", model: "Model") -> None:
 
 @pytest.mark.skipif(scipy is None, reason="scipy unavailable")
 def test_read_rewrite_matlab_model(
-    tmpdir: "py.path.local", data_directory: str
+    compare_models: Callable, tmp_path: Path, data_directory: Path
 ) -> None:
     """Verify that rewritten matlab model is identical to original."""
     mini_mat_model = io.load_matlab_model(join(data_directory, "mini.mat"))
     raven_mat_model = io.load_matlab_model(join(data_directory, "raven.mat"))
-    mini_output_file = tmpdir.join("mini.mat")
-    raven_output_file = tmpdir.join("raven.mat")
+    mini_output_file = tmp_path.joinpath("mini.mat")
+    raven_output_file = tmp_path.joinpath("raven.mat")
     # scipy.io.savemat() doesn't support anything other than
     # str or file-stream object, hence the str conversion
     io.save_matlab_model(mini_mat_model, str(mini_output_file))
@@ -153,12 +155,15 @@ def _fix_xml_annotation_to_identifiers(model: "Model") -> None:
 # "valid_annotation_output.xml" has reaction annotations in a metabolite, so they would
 # be thrown out by matlab
 def test_compare_xml_to_written_matlab_model(
-    data_directory: str, tmpdir: "py.path.local", xml_file: str
+    compare_models: Callable,
+    data_directory: Path,
+    tmp_path: Path,
+    xml_file: str,
 ) -> None:
     """Verify that xml rewritten as mat file is written and read correctly."""
     xml_model = io.read_sbml_model(join(data_directory, xml_file))
     _fix_xml_annotation_to_identifiers(xml_model)
-    mat_output_file = tmpdir.join(xml_file.replace(".xml", ".mat"))
+    mat_output_file = tmp_path.joinpath(xml_file.replace(".xml", ".mat"))
     io.save_matlab_model(
         xml_model, str(mat_output_file)
     )  # lac__D_e_boundary confuses the reading of matlab
@@ -181,9 +186,9 @@ def test_fail_on_problematic_compartments(data_directory: str) -> None:
 
 @pytest.mark.skipif(scipy is None, reason="scipy unavailable")
 def test_mat_model_with_long_compartment_ids(
-    data_directory: str, tmpdir: "py.path.local"
+    compare_models: Callable, data_directory: Path, tmp_path: Path
 ) -> None:
-    """Test that long compartment IDs like "luSI" are correctly loaded"""
+    """Test that long compartment IDs like "luSI" are correctly loaded."""
     model_compartments = io.load_matlab_model(join(data_directory, "compartments.mat"))
     assert model_compartments.compartments == {
         "csf": "csf",
@@ -204,27 +209,29 @@ def test_mat_model_with_long_compartment_ids(
             "kegg.compound": ["C00031"],
             "pubchem.substance": ["3333"],
         }
-    output_file = tmpdir.join("compartments.mat")
+    output_file = tmp_path.joinpath("compartments.mat")
     io.save_matlab_model(model_compartments, str(output_file))
     model_compartments_reloaded = io.load_matlab_model(str(output_file))
     assert compare_models(model_compartments, model_compartments_reloaded) is None
 
 
 @pytest.mark.skipif(scipy is None, reason="scipy unavailable")
-def test_mat_model_with_no_genes(data_directory: str, tmpdir: "py.path.local") -> None:
+def test_mat_model_with_no_genes(
+    compare_models: Callable, data_directory: Path, tmp_path: Path
+) -> None:
     """Test that a model with no genes is loaded and reloaded correctly."""
     model_no_genes = io.load_matlab_model(
         join(data_directory, "cardiac_mit_glcuptake_atpmax.mat")
     )
     assert not len(model_no_genes.genes)
-    output_file = tmpdir.join("cardiac_mit_glcuptake_atpmax.mat")
+    output_file = tmp_path.joinpath("cardiac_mit_glcuptake_atpmax.mat")
     io.save_matlab_model(model_no_genes, str(output_file))
     model_no_genes_reloaded = io.load_matlab_model(str(output_file))
     assert compare_models(model_no_genes, model_no_genes_reloaded) is None
 
 
 @pytest.mark.skipif(scipy is None, reason="scipy unavailable")
-def test_mat_model_wrong_caps(data_directory: str) -> None:
+def test_mat_model_wrong_caps(compare_models: Callable, data_directory: Path) -> None:
     """Check that wrong capitalization in matlab field names is processed correctly.
 
     See https://gist.github.com/akaviaLab/3dcb0eed6563a9d3d1e07198337300ac to create it
diff --git a/src/cobra/test/test_io/test_notes.py b/tests/test_io/test_notes.py
similarity index 95%
rename from src/cobra/test/test_io/test_notes.py
rename to tests/test_io/test_notes.py
index a0b99040e..a1fbf0b2c 100644
--- a/src/cobra/test/test_io/test_notes.py
+++ b/tests/test_io/test_notes.py
@@ -5,7 +5,7 @@
 
 
 def test_notes(tmp_path):
-    """Testing if model notes are written in SBML"""
+    """Testing if model notes are written in SBML."""
     path_to_file = join(str(tmp_path), "model_notes.xml")
 
     # making a minimal cobra model to test notes
diff --git a/tests/test_io/test_pickle.py b/tests/test_io/test_pickle.py
new file mode 100644
index 000000000..3a0901fcb
--- /dev/null
+++ b/tests/test_io/test_pickle.py
@@ -0,0 +1,39 @@
+"""Test data storage and recovery using pickle."""
+
+from pathlib import Path
+from pickle import dump, load
+from typing import Callable
+
+import pytest
+
+from cobra import Model
+
+
+@pytest.mark.parametrize("load_function", [load])
+def test_read_pickle(
+    compare_models: Callable,
+    data_directory: Path,
+    mini_model: Model,
+    load_function: Callable,
+):
+    """Test the reading of model from pickle."""
+    if load_function is None:
+        pytest.skip()
+
+    with open(data_directory.joinpath("mini.pickle"), "rb") as infile:
+        pickle_model = load_function(infile)
+
+    assert compare_models(mini_model, pickle_model) is None
+
+
+@pytest.mark.parametrize("dump_function", [dump])
+def test_write_pickle(tmp_path: Path, mini_model: Model, dump_function: Callable):
+    """Test the writing of model to pickle."""
+    if dump_function is None:
+        pytest.skip()
+
+    output_file = tmp_path.joinpath("mini.pickle")
+    with open(str(output_file), "wb") as outfile:
+        dump_function(mini_model, outfile)
+
+    assert output_file.exists()
diff --git a/src/cobra/test/test_io/test_sbml.py b/tests/test_io/test_sbml.py
similarity index 97%
rename from src/cobra/test/test_io/test_sbml.py
rename to tests/test_io/test_sbml.py
index f7bb6631a..776c3dcb8 100644
--- a/src/cobra/test/test_io/test_sbml.py
+++ b/tests/test_io/test_sbml.py
@@ -3,6 +3,7 @@
 from collections import namedtuple
 from os import unlink
 from os.path import join, split
+from pathlib import Path
 from pickle import load
 from tempfile import gettempdir
 from typing import List, Tuple
@@ -276,14 +277,14 @@ def io_trial(
     return request.param.name, reference_model, test_model, reread_model
 
 
-def test_filehandle(data_directory: str, tmp_path: str) -> None:
+def test_filehandle(data_directory: str, tmp_path: Path) -> None:
     """Test reading and writing to file handle.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     with open(join(data_directory, "mini_fbc2.xml"), "r") as f_in:
@@ -318,12 +319,12 @@ def test_from_sbml_string(data_directory: str) -> None:
 
 
 @pytest.mark.skip(reason="Model history currently not written")
-def test_model_history(tmp_path: str) -> None:
+def test_model_history(tmp_path: Path) -> None:
     """Testing reading and writing of ModelHistory.
 
     Parameters
     ----------
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     model = Model("test")
@@ -354,14 +355,14 @@ def test_model_history(tmp_path: str) -> None:
     assert c["email"] == "muster@university.com"
 
 
-def test_groups(data_directory: str, tmp_path: str) -> None:
+def test_groups(data_directory: str, tmp_path: Path) -> None:
     """Testing reading and writing of groups.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     sbml_path = join(data_directory, "e_coli_core.xml")
@@ -455,14 +456,14 @@ def test_validation_warnings(data_directory: str) -> None:
         assert "No objective in listOfObjectives" in errors["COBRA_WARNING"]
 
 
-def test_infinity_bounds(data_directory: str, tmp_path: str) -> None:
+def test_infinity_bounds(data_directory: str, tmp_path: Path) -> None:
     """Test infinity bound example.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     sbml_path = join(data_directory, "fbc_ex1.xml")
@@ -512,14 +513,14 @@ def test_boundary_conditions(data_directory: str) -> None:
     assert sol1.objective_value == sol2.objective_value
 
 
-def test_gprs(data_directory: str, tmp_path: str) -> None:
+def test_gprs(data_directory: str, tmp_path: Path) -> None:
     """Test that GPRs are written and read correctly.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     model1 = read_sbml_model(join(data_directory, "iJO1366.xml.gz"))
@@ -574,14 +575,14 @@ def test_identifiers_annotation() -> None:
         assert data is None
 
 
-def test_smbl_with_notes(data_directory: str, tmp_path: str) -> None:
+def test_smbl_with_notes(data_directory: str, tmp_path: Path) -> None:
     """Test that NOTES in the RECON 2.2 style are written and read correctly.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     sbml_path = join(data_directory, "example_notes.xml")
@@ -689,14 +690,14 @@ def test_smbl_with_notes(data_directory: str, tmp_path: str) -> None:
         )
 
 
-def test_stable_gprs(data_directory: str, tmp_path: str) -> None:
+def test_stable_gprs(data_directory: str, tmp_path: Path) -> None:
     """Test that GPRs are written correctly after manual changes.
 
     Parameters
     ----------
     data_directory: str
         Directory where the data is.
-    tmp_path: str
+    tmp_path: Path
         Directory to use for temporary data.
     """
     mini = read_sbml_model(join(data_directory, "mini_fbc2.xml"))
diff --git a/src/cobra/test/test_io/test_web/test_load.py b/tests/test_io/test_web/test_load.py
similarity index 95%
rename from src/cobra/test/test_io/test_web/test_load.py
rename to tests/test_io/test_web/test_load.py
index 3f91d72bb..abfb4b809 100644
--- a/src/cobra/test/test_io/test_web/test_load.py
+++ b/tests/test_io/test_web/test_load.py
@@ -71,3 +71,8 @@ def test_cache(monkeypatch, tmp_path, bigg_models, biomodels):
     biomodels.get_sbml.assert_not_called()
     assert len(cached_model.metabolites) == len(remote_model.metabolites)
     assert len(cached_model.reactions) == len(remote_model.reactions)
+
+
+def test_local_load(model, compare_models):
+    model_local = load_model("textbook")
+    compare_models(model, model_local)
diff --git a/src/cobra/test/test_io/test_yaml.py b/tests/test_io/test_yaml.py
similarity index 58%
rename from src/cobra/test/test_io/test_yaml.py
rename to tests/test_io/test_yaml.py
index a440281ea..4bb2e593e 100644
--- a/src/cobra/test/test_io/test_yaml.py
+++ b/tests/test_io/test_yaml.py
@@ -1,31 +1,33 @@
 """Test functionalities of I/O in YAML format."""
 
 import json
-from os.path import join
+from pathlib import Path
+from typing import Callable
 
 import pytest
 from ruamel.yaml import YAML
 
 from cobra import Model
 from cobra import io as cio
-from cobra.test.test_io.conftest import compare_models
 
 
-def test_load_yaml_model(data_directory: str, mini_model: Model) -> None:
+def test_load_yaml_model(
+    compare_models: Callable, data_directory: Path, mini_model: Model
+) -> None:
     """Test the reading of YAML model."""
-    yaml_model = cio.load_yaml_model(join(data_directory, "mini.yml"))
+    yaml_model = cio.load_yaml_model(data_directory.joinpath("mini.yml"))
     assert compare_models(mini_model, yaml_model) is None
 
 
 @pytest.mark.xfail(reason="schema outdated")
-def test_save_yaml_model(tmpdir: str, mini_model: Model) -> None:
+def test_save_yaml_model(tmp_path: Path, mini_model: Model) -> None:
     """Test the writing of YAML model."""
     jsonschema = pytest.importorskip("jsonschema")
-    output_file = tmpdir.join("mini.yml")
-    cio.save_yaml_model(mini_model, output_file.strpath, sort=True)
+    output_file = tmp_path.joinpath("mini.yml")
+    cio.save_yaml_model(mini_model, str(output_file), sort=True)
     # validate against JSONSchema
     yaml = YAML(typ="unsafe")
-    with open(output_file.strpath, "r") as infile:
+    with open(output_file, "r") as infile:
         yaml_to_dict = yaml.load(infile)
     dict_to_json = json.dumps(yaml_to_dict)
     loaded = json.loads(dict_to_json)
diff --git a/src/cobra/test/test_manipulation/test_annotate.py b/tests/test_manipulation/test_annotate.py
similarity index 100%
rename from src/cobra/test/test_manipulation/test_annotate.py
rename to tests/test_manipulation/test_annotate.py
diff --git a/src/cobra/test/test_manipulation/test_delete.py b/tests/test_manipulation/test_delete.py
similarity index 100%
rename from src/cobra/test/test_manipulation/test_delete.py
rename to tests/test_manipulation/test_delete.py
diff --git a/src/cobra/test/test_manipulation/test_modify.py b/tests/test_manipulation/test_modify.py
similarity index 100%
rename from src/cobra/test/test_manipulation/test_modify.py
rename to tests/test_manipulation/test_modify.py
diff --git a/src/cobra/test/test_manipulation/test_validate.py b/tests/test_manipulation/test_validate.py
similarity index 91%
rename from src/cobra/test/test_manipulation/test_validate.py
rename to tests/test_manipulation/test_validate.py
index e09eafb26..587647e29 100644
--- a/src/cobra/test/test_manipulation/test_validate.py
+++ b/tests/test_manipulation/test_validate.py
@@ -3,7 +3,10 @@
 import pytest
 
 from cobra.core import Metabolite, Model, Reaction
-from cobra.manipulation import check_mass_balance, check_metabolite_compartment_formula
+from cobra.manipulation import (
+    check_mass_balance,
+    check_metabolite_compartment_formula,
+)
 
 
 def test_validate_mass_balance(model: Model) -> None:
diff --git a/src/cobra/test/test_medium/test_boundary_types.py b/tests/test_medium/test_boundary_types.py
similarity index 100%
rename from src/cobra/test/test_medium/test_boundary_types.py
rename to tests/test_medium/test_boundary_types.py
diff --git a/src/cobra/test/test_medium/test_minimal_medium.py b/tests/test_medium/test_minimal_medium.py
similarity index 100%
rename from src/cobra/test/test_medium/test_minimal_medium.py
rename to tests/test_medium/test_minimal_medium.py
diff --git a/src/cobra/test/test_sampling/conftest.py b/tests/test_sampling/conftest.py
similarity index 100%
rename from src/cobra/test/test_sampling/conftest.py
rename to tests/test_sampling/conftest.py
diff --git a/src/cobra/test/test_sampling/test_achr.py b/tests/test_sampling/test_achr.py
similarity index 100%
rename from src/cobra/test/test_sampling/test_achr.py
rename to tests/test_sampling/test_achr.py
diff --git a/src/cobra/test/test_sampling/test_optgp.py b/tests/test_sampling/test_optgp.py
similarity index 100%
rename from src/cobra/test/test_sampling/test_optgp.py
rename to tests/test_sampling/test_optgp.py
diff --git a/src/cobra/test/test_sampling/test_sampling.py b/tests/test_sampling/test_sampling.py
similarity index 100%
rename from src/cobra/test/test_sampling/test_sampling.py
rename to tests/test_sampling/test_sampling.py
diff --git a/src/cobra/test/test_summary/test_metabolite_summary.py b/tests/test_summary/test_metabolite_summary.py
similarity index 100%
rename from src/cobra/test/test_summary/test_metabolite_summary.py
rename to tests/test_summary/test_metabolite_summary.py
diff --git a/src/cobra/test/test_summary/test_model_summary.py b/tests/test_summary/test_model_summary.py
similarity index 100%
rename from src/cobra/test/test_summary/test_model_summary.py
rename to tests/test_summary/test_model_summary.py
diff --git a/src/cobra/test/test_summary/test_reaction_summary.py b/tests/test_summary/test_reaction_summary.py
similarity index 100%
rename from src/cobra/test/test_summary/test_reaction_summary.py
rename to tests/test_summary/test_reaction_summary.py
diff --git a/src/cobra/test/test_util/test_array.py b/tests/test_util/test_array.py
similarity index 100%
rename from src/cobra/test/test_util/test_array.py
rename to tests/test_util/test_array.py
diff --git a/src/cobra/test/test_util/test_context.py b/tests/test_util/test_context.py
similarity index 100%
rename from src/cobra/test/test_util/test_context.py
rename to tests/test_util/test_context.py
diff --git a/src/cobra/test/test_util/test_process_pool.py b/tests/test_util/test_process_pool.py
similarity index 100%
rename from src/cobra/test/test_util/test_process_pool.py
rename to tests/test_util/test_process_pool.py
diff --git a/src/cobra/test/test_util/test_solver.py b/tests/test_util/test_solver.py
similarity index 100%
rename from src/cobra/test/test_util/test_solver.py
rename to tests/test_util/test_solver.py
diff --git a/src/cobra/test/test_util/test_util.py b/tests/test_util/test_util.py
similarity index 100%
rename from src/cobra/test/test_util/test_util.py
rename to tests/test_util/test_util.py
diff --git a/tox.ini b/tox.ini
index 871aff7c0..dc978e5ef 100644
--- a/tox.ini
+++ b/tox.ini
@@ -82,7 +82,7 @@ commands=
 
 [pytest]
 testpaths =
-    src/cobra/test
+    tests
 markers =
     raises
 
@@ -94,16 +94,12 @@ source =
 [coverage:run]
 branch = true
 parallel = true
-omit =
-    */cobra/test/*
 
 [coverage:report]
 exclude_lines =
 # Have to re-enable the standard pragma
     pragma: no cover
 precision = 2
-omit =
-    */cobra/test/*
 
 [isort]
 skip = __init__.py