From cb1ee0ba9dcde80f2885f437bb57afcb9a29c314 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Rapha=C3=ABl=20GAZZOTTI?= Date: Wed, 4 Sep 2024 10:14:38 +0200 Subject: [PATCH 1/4] Removal of former namespace. --- .../actors/accountInformation.schema.tpl.json | 4 +- schemas/actors/affiliation.schema.tpl.json | 6 +- schemas/actors/consortium.schema.tpl.json | 4 +- .../actors/contactInformation.schema.tpl.json | 2 +- schemas/actors/contribution.schema.tpl.json | 4 +- schemas/actors/organization.schema.tpl.json | 12 ++-- schemas/actors/person.schema.tpl.json | 10 ++-- schemas/data/contentType.schema.tpl.json | 4 +- .../data/contentTypePattern.schema.tpl.json | 4 +- schemas/data/copyright.schema.tpl.json | 2 +- schemas/data/file.schema.tpl.json | 16 +++--- schemas/data/fileArchive.schema.tpl.json | 6 +- schemas/data/fileBundle.schema.tpl.json | 14 ++--- schemas/data/filePathPattern.schema.tpl.json | 4 +- schemas/data/fileRepository.schema.tpl.json | 16 +++--- .../fileRepositoryStructure.schema.tpl.json | 4 +- schemas/data/hash.schema.tpl.json | 2 +- schemas/data/license.schema.tpl.json | 2 +- schemas/data/measurement.schema.tpl.json | 8 +-- schemas/data/serviceLink.schema.tpl.json | 18 +++--- schemas/digitalIdentifier/DOI.schema.tpl.json | 2 +- .../digitalIdentifier/GRIDID.schema.tpl.json | 2 +- .../digitalIdentifier/HANDLE.schema.tpl.json | 2 +- .../digitalIdentifier/ISBN.schema.tpl.json | 2 +- .../digitalIdentifier/ISSN.schema.tpl.json | 2 +- .../IdentifiersDotOrgID.schema.tpl.json | 2 +- .../digitalIdentifier/ORCID.schema.tpl.json | 2 +- .../digitalIdentifier/RORID.schema.tpl.json | 2 +- .../digitalIdentifier/RRID.schema.tpl.json | 2 +- .../digitalIdentifier/SWHID.schema.tpl.json | 2 +- .../genericIdentifier.tpl.json | 4 +- .../stockNumber.schema.tpl.json | 4 +- schemas/miscellaneous/comment.schema.tpl.json | 4 +- schemas/miscellaneous/funding.schema.tpl.json | 2 +- .../quantitativeValue.schema.tpl.json | 6 +- .../quantitativeValueArray.schema.tpl.json | 6 +- .../quantitativeValueRange.schema.tpl.json | 6 +- .../researchProductGroup.schema.tpl.json | 2 +- .../miscellaneous/webResource.schema.tpl.json | 4 +- schemas/products/dataset.schema.tpl.json | 8 +-- .../products/datasetVersion.schema.tpl.json | 56 +++++++++---------- schemas/products/device.schema.tpl.json | 6 +- .../products/metaDataModel.schema.tpl.json | 8 +-- .../metaDataModelVersion.schema.tpl.json | 18 +++--- schemas/products/model.schema.tpl.json | 12 ++-- schemas/products/modelVersion.schema.tpl.json | 30 +++++----- schemas/products/project.schema.tpl.json | 2 +- .../researchProductVersion.schema.tpl.json | 18 +++--- schemas/products/setup.schema.tpl.json | 4 +- schemas/products/software.schema.tpl.json | 10 ++-- .../products/softwareVersion.schema.tpl.json | 32 +++++------ schemas/products/webService.schema.tpl.json | 4 +- .../webServiceVersion.schema.tpl.json | 12 ++-- schemas/research/activity.schema.tpl.json | 10 ++-- .../behavioralProtocol.schema.tpl.json | 12 ++-- .../research/configuration.schema.tpl.json | 4 +- .../customPropertySet.schema.tpl.json | 8 +-- schemas/research/deviceUsage.schema.tpl.json | 8 +-- .../experimentalActivity.schema.tpl.json | 6 +- .../numericalProperty.schema.tpl.json | 6 +- .../propertyValueList.schema.tpl.json | 6 +- schemas/research/protocol.schema.tpl.json | 8 +-- .../protocolExecution.schema.tpl.json | 32 +++++------ schemas/research/specimen.schema.tpl.json | 6 +- schemas/research/specimenSet.schema.tpl.json | 6 +- .../research/specimenState.schema.tpl.json | 16 +++--- schemas/research/strain.schema.tpl.json | 18 +++--- .../research/stringProperty.schema.tpl.json | 2 +- schemas/research/subject.schema.tpl.json | 6 +- schemas/research/subjectGroup.schema.tpl.json | 4 +- .../subjectGroupState.schema.tpl.json | 10 ++-- schemas/research/subjectState.schema.tpl.json | 10 ++-- schemas/research/tissueSample.schema.tpl.json | 16 +++--- .../tissueSampleCollection.schema.tpl.json | 14 ++--- ...issueSampleCollectionState.schema.tpl.json | 12 ++-- .../tissueSampleState.schema.tpl.json | 12 ++-- version.txt | 2 +- 77 files changed, 327 insertions(+), 327 deletions(-) diff --git a/schemas/actors/accountInformation.schema.tpl.json b/schemas/actors/accountInformation.schema.tpl.json index 2c298754..92a4b997 100644 --- a/schemas/actors/accountInformation.schema.tpl.json +++ b/schemas/actors/accountInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/AccountInformation", + "_type": "/core/AccountInformation", "required": [ "service", "userName" @@ -8,7 +8,7 @@ "service": { "_instruction": "Add the web service of this account.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/WebService" + "/core/WebService" ] }, "userName": { diff --git a/schemas/actors/affiliation.schema.tpl.json b/schemas/actors/affiliation.schema.tpl.json index e8227e4c..4a8fe39c 100644 --- a/schemas/actors/affiliation.schema.tpl.json +++ b/schemas/actors/affiliation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Affiliation", + "_type": "/core/Affiliation", "required": [ "memberOf" ], @@ -14,8 +14,8 @@ "memberOf": { "_instruction": "Add the organization or consortium another party was or still is a member of.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Consortium", - "https://openminds.ebrains.eu/core/Organization" + "/core/Consortium", + "/core/Organization" ] }, "startDate": { diff --git a/schemas/actors/consortium.schema.tpl.json b/schemas/actors/consortium.schema.tpl.json index 30ee7c59..4668a1d6 100644 --- a/schemas/actors/consortium.schema.tpl.json +++ b/schemas/actors/consortium.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Consortium", + "_type": "/core/Consortium", "_categories": [ "legalPerson" ], @@ -10,7 +10,7 @@ "contactInformation": { "_instruction": "Add the contact information of this consortium.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContactInformation" + "/core/ContactInformation" ] }, "fullName": { diff --git a/schemas/actors/contactInformation.schema.tpl.json b/schemas/actors/contactInformation.schema.tpl.json index eee17d4e..ed7a3d8f 100644 --- a/schemas/actors/contactInformation.schema.tpl.json +++ b/schemas/actors/contactInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ContactInformation", + "_type": "/core/ContactInformation", "required": [ "email" ], diff --git a/schemas/actors/contribution.schema.tpl.json b/schemas/actors/contribution.schema.tpl.json index a4a43546..345d280f 100644 --- a/schemas/actors/contribution.schema.tpl.json +++ b/schemas/actors/contribution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Contribution", + "_type": "/core/Contribution", "required": [ "contributor", "type" @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add the party that performed the contribution.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ContributionType" + "/controlledTerms/ContributionType" ] } } diff --git a/schemas/actors/organization.schema.tpl.json b/schemas/actors/organization.schema.tpl.json index 0ff1a6f2..41332cc5 100644 --- a/schemas/actors/organization.schema.tpl.json +++ b/schemas/actors/organization.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Organization", + "_type": "/core/Organization", "_categories": [ "legalPerson" ], @@ -13,7 +13,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if necessary, past affiliations of this organization.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Affiliation" + "/core/Affiliation" ] }, "digitalIdentifier": { @@ -22,9 +22,9 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this organization.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/GRIDID", - "https://openminds.ebrains.eu/core/RORID", - "https://openminds.ebrains.eu/core/RRID" + "/core/GRIDID", + "/core/RORID", + "/core/RRID" ] }, "fullName": { @@ -37,7 +37,7 @@ "uniqueItems": true, "_instruction": "Add all parent organizations of this organization.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Organization" + "/core/Organization" ] }, "homepage": { diff --git a/schemas/actors/person.schema.tpl.json b/schemas/actors/person.schema.tpl.json index f1ce1c1e..383f5015 100644 --- a/schemas/actors/person.schema.tpl.json +++ b/schemas/actors/person.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Person", + "_type": "/core/Person", "_categories": [ "agent", "legalPerson" @@ -14,7 +14,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if desired, past affiliations of this person.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Affiliation" + "/core/Affiliation" ] }, "alternateName": { @@ -32,13 +32,13 @@ "uniqueItems": true, "_instruction": "Add the information about web service accounts held by this person.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/AccountInformation" + "/core/AccountInformation" ] }, "contactInformation": { "_instruction": "Add the contact information of this person.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContactInformation" + "/core/ContactInformation" ] }, "digitalIdentifier": { @@ -47,7 +47,7 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this person.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ORCID" + "/core/ORCID" ] }, "familyName": { diff --git a/schemas/data/contentType.schema.tpl.json b/schemas/data/contentType.schema.tpl.json index 7fc60187..4742550b 100644 --- a/schemas/data/contentType.schema.tpl.json +++ b/schemas/data/contentType.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ContentType", + "_type": "/core/ContentType", "required": [ "name" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all data types that may be represented via this content type.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/DataType" + "/controlledTerms/DataType" ] }, "description": { diff --git a/schemas/data/contentTypePattern.schema.tpl.json b/schemas/data/contentTypePattern.schema.tpl.json index ae58fb49..5ce6b3bf 100644 --- a/schemas/data/contentTypePattern.schema.tpl.json +++ b/schemas/data/contentTypePattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ContentTypePattern", + "_type": "/core/ContentTypePattern", "required": [ "contentType", "regex" @@ -8,7 +8,7 @@ "contentType": { "_instruction": "Add the content type that can be defined by the regular expression of this content type pattern (e.g., for file extensions).", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "lookupLabel": { diff --git a/schemas/data/copyright.schema.tpl.json b/schemas/data/copyright.schema.tpl.json index 0a476575..ef5b64d9 100644 --- a/schemas/data/copyright.schema.tpl.json +++ b/schemas/data/copyright.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Copyright", + "_type": "/core/Copyright", "required": [ "holder", "year" diff --git a/schemas/data/file.schema.tpl.json b/schemas/data/file.schema.tpl.json index 1471dfb5..be7542b5 100644 --- a/schemas/data/file.schema.tpl.json +++ b/schemas/data/file.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/File", + "_type": "/core/File", "_categories": [ "fileOrigin" ], @@ -18,19 +18,19 @@ "uniqueItems": true, "_instruction": "Add all data types that are specifically represented in this file instance.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/DataType" + "/controlledTerms/DataType" ] }, "fileRepository": { "_instruction": "Add the overarching repository to which this file instance belongs.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/FileRepository" + "/core/FileRepository" ] }, "format": { "_instruction": "Add the content type of this file instance.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "hash": { @@ -39,7 +39,7 @@ "uniqueItems": true, "_instruction": "Add all hashes that were generated for this file instance.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Hash" + "/core/Hash" ] }, "IRI": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all file bundles in which this file instance is grouped into.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/FileBundle" + "/core/FileBundle" ] }, "name": { @@ -65,13 +65,13 @@ "specialUsageRole": { "_instruction": "Add the special usage role of this file instance.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/FileUsageRole" + "/controlledTerms/FileUsageRole" ] }, "storageSize": { "_instruction": "Enter the storage size of this file instance.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue" + "/core/QuantitativeValue" ] } } diff --git a/schemas/data/fileArchive.schema.tpl.json b/schemas/data/fileArchive.schema.tpl.json index 3b63d376..83e7479a 100644 --- a/schemas/data/fileArchive.schema.tpl.json +++ b/schemas/data/fileArchive.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/FileArchive", + "_type": "/core/FileArchive", "required": [ "format", "IRI" @@ -8,7 +8,7 @@ "format": { "_instruction": "Add the content type of this file archive.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "IRI": { @@ -24,7 +24,7 @@ "uniqueItems": true, "_instruction": "Add the data that were ingested and modified to create this file archive.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File" + "/core/File" ] } } diff --git a/schemas/data/fileBundle.schema.tpl.json b/schemas/data/fileBundle.schema.tpl.json index 5e2a7962..5c2cf622 100644 --- a/schemas/data/fileBundle.schema.tpl.json +++ b/schemas/data/fileBundle.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/FileBundle", + "_type": "/core/FileBundle", "_categories": [ "fileOrigin" ], @@ -15,7 +15,7 @@ "format": { "_instruction": "If the files within this bundle are organised and formatted according to a formal data structure, add the content type of this file bundle. Leave blank if no formal data structure has been applied to the files within this bundle.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "groupedBy": { @@ -35,20 +35,20 @@ "uniqueItems": true, "_instruction": "Add all grouping types that were used to define this file bundle. Note that the grouping types define the possible schema type of the instances stated under 'groupedBy'.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/FileBundleGrouping" + "/controlledTerms/FileBundleGrouping" ] }, "hash": { "_instruction": "Add the hash that was generated for this file bundle.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Hash" + "/core/Hash" ] }, "isPartOf": { "_instruction": "Add the file bundle or file repository this file bundle is part of.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/FileRepository" + "/core/FileBundle", + "/core/FileRepository" ] }, "name": { @@ -58,7 +58,7 @@ "storageSize": { "_instruction": "Enter the storage size of this file bundle.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue" + "/core/QuantitativeValue" ] } } diff --git a/schemas/data/filePathPattern.schema.tpl.json b/schemas/data/filePathPattern.schema.tpl.json index af924dbc..7aa3f3a4 100644 --- a/schemas/data/filePathPattern.schema.tpl.json +++ b/schemas/data/filePathPattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/FilePathPattern", + "_type": "/core/FilePathPattern", "required": [ "groupingType", "regex" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all grouping types that are defined by this file path pattern.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/FileBundleGrouping" + "/controlledTerms/FileBundleGrouping" ] }, "regex": { diff --git a/schemas/data/fileRepository.schema.tpl.json b/schemas/data/fileRepository.schema.tpl.json index b1fd99ac..1ebf3646 100644 --- a/schemas/data/fileRepository.schema.tpl.json +++ b/schemas/data/fileRepository.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/FileRepository", + "_type": "/core/FileRepository", "required": [ "hostedBy", "IRI", @@ -9,19 +9,19 @@ "format": { "_instruction": "If the files and file bundles within this repository are organised and formatted according to a formal data structure, add the content type of this formal data structure. Leave blank if no formal data structure has been applied.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "hash": { "_instruction": "Add the hash that was generated for this file repository.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Hash" + "/core/Hash" ] }, "hostedBy": { "_instruction": "Add the host organization of this file repository.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Organization" + "/core/Organization" ] }, "IRI": { @@ -41,25 +41,25 @@ "uniqueItems": true, "_instruction": "Add all content type patterns that identify matching content types for files within this file repository.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentTypePattern" + "/core/ContentTypePattern" ] }, "storageSize": { "_instruction": "Enter the storage size of this file repository.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue" + "/core/QuantitativeValue" ] }, "structurePattern": { "_instruction": "Add the file repository structure that identifies the file path patterns used in this file repository.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/FileRepositoryStructure" + "/core/FileRepositoryStructure" ] }, "type": { "_instruction": "Add the type of this file repository.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/FileRepositoryType" + "/controlledTerms/FileRepositoryType" ] } } diff --git a/schemas/data/fileRepositoryStructure.schema.tpl.json b/schemas/data/fileRepositoryStructure.schema.tpl.json index f65e10e6..bdaebfac 100644 --- a/schemas/data/fileRepositoryStructure.schema.tpl.json +++ b/schemas/data/fileRepositoryStructure.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/FileRepositoryStructure", + "_type": "/core/FileRepositoryStructure", "required": [ "filePathPattern" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all file path patterns that define this file repository structure.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/FilePathPattern" + "/core/FilePathPattern" ] }, "lookupLabel": { diff --git a/schemas/data/hash.schema.tpl.json b/schemas/data/hash.schema.tpl.json index d863f96a..ff270a45 100644 --- a/schemas/data/hash.schema.tpl.json +++ b/schemas/data/hash.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Hash", + "_type": "/core/Hash", "required": [ "algorithm", "digest" diff --git a/schemas/data/license.schema.tpl.json b/schemas/data/license.schema.tpl.json index 26d39001..637574c8 100644 --- a/schemas/data/license.schema.tpl.json +++ b/schemas/data/license.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/License", + "_type": "/core/License", "required": [ "fullName", "legalCode", diff --git a/schemas/data/measurement.schema.tpl.json b/schemas/data/measurement.schema.tpl.json index 18336723..f8c7bd3e 100644 --- a/schemas/data/measurement.schema.tpl.json +++ b/schemas/data/measurement.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Measurement", + "_type": "/core/Measurement", "required": [ "measuredQuantity", "value" @@ -12,7 +12,7 @@ "measuredQuantity": { "_instruction": "Add the quantity that was measured during this measurement.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/MeasuredQuantity" + "/controlledTerms/MeasuredQuantity" ] }, "measuredWith": { @@ -34,8 +34,8 @@ "uniqueItems": true, "_instruction": "Enter all values that were measured at the same time and are of the same measured quantity.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue", - "https://openminds.ebrains.eu/core/QuantitativeValueRange" + "/core/QuantitativeValue", + "/core/QuantitativeValueRange" ] } } diff --git a/schemas/data/serviceLink.schema.tpl.json b/schemas/data/serviceLink.schema.tpl.json index 7a929319..2f7cb3ee 100644 --- a/schemas/data/serviceLink.schema.tpl.json +++ b/schemas/data/serviceLink.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ServiceLink", + "_type": "/core/ServiceLink", "required": [ "dataLocation", "openDataIn", @@ -9,12 +9,12 @@ "dataLocation": { "_instruction": "Add the location of the data that are linked to this specific service (e.g., stored as file (bundles) or registered as other entities such as atlas annotations).", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileArchive", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/ModelVersion", - "https://openminds.ebrains.eu/publications/LivePaperResourceItem", - "https://openminds.ebrains.eu/sands/ParcellationEntityVersion" + "/core/File", + "/core/FileArchive", + "/core/FileBundle", + "/core/ModelVersion", + "/publications/LivePaperResourceItem", + "/sands/ParcellationEntityVersion" ] }, "displayLabel": { @@ -31,13 +31,13 @@ "previewImage": { "_instruction": "Add an image file to this service link that acts as a preview of its content or could function as an icon.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File" + "/core/File" ] }, "service": { "_instruction": "Add the service in which the specified data can be opened.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Service" + "/controlledTerms/Service" ] } } diff --git a/schemas/digitalIdentifier/DOI.schema.tpl.json b/schemas/digitalIdentifier/DOI.schema.tpl.json index 64a90a51..b727c72c 100644 --- a/schemas/digitalIdentifier/DOI.schema.tpl.json +++ b/schemas/digitalIdentifier/DOI.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/DOI", + "_type": "/core/DOI", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/GRIDID.schema.tpl.json b/schemas/digitalIdentifier/GRIDID.schema.tpl.json index c2f64f86..a3a5f861 100644 --- a/schemas/digitalIdentifier/GRIDID.schema.tpl.json +++ b/schemas/digitalIdentifier/GRIDID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/GRIDID", + "_type": "/core/GRIDID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/HANDLE.schema.tpl.json b/schemas/digitalIdentifier/HANDLE.schema.tpl.json index 65837c19..703c55be 100644 --- a/schemas/digitalIdentifier/HANDLE.schema.tpl.json +++ b/schemas/digitalIdentifier/HANDLE.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/HANDLE", + "_type": "/core/HANDLE", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISBN.schema.tpl.json b/schemas/digitalIdentifier/ISBN.schema.tpl.json index 0dc4efb1..e470811b 100644 --- a/schemas/digitalIdentifier/ISBN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISBN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ISBN", + "_type": "/core/ISBN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISSN.schema.tpl.json b/schemas/digitalIdentifier/ISSN.schema.tpl.json index 384ad1d6..4adff968 100644 --- a/schemas/digitalIdentifier/ISSN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISSN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ISSN", + "_type": "/core/ISSN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json index d5c203da..66489c64 100644 --- a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json +++ b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/IdentifiersDotOrgID", + "_type": "/core/IdentifiersDotOrgID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/ORCID.schema.tpl.json b/schemas/digitalIdentifier/ORCID.schema.tpl.json index 7c6c5d93..b88dda93 100644 --- a/schemas/digitalIdentifier/ORCID.schema.tpl.json +++ b/schemas/digitalIdentifier/ORCID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ORCID", + "_type": "/core/ORCID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RORID.schema.tpl.json b/schemas/digitalIdentifier/RORID.schema.tpl.json index 2237dc51..5b8c3a37 100644 --- a/schemas/digitalIdentifier/RORID.schema.tpl.json +++ b/schemas/digitalIdentifier/RORID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/RORID", + "_type": "/core/RORID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RRID.schema.tpl.json b/schemas/digitalIdentifier/RRID.schema.tpl.json index bca9316a..714d4ddf 100644 --- a/schemas/digitalIdentifier/RRID.schema.tpl.json +++ b/schemas/digitalIdentifier/RRID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/RRID", + "_type": "/core/RRID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/SWHID.schema.tpl.json b/schemas/digitalIdentifier/SWHID.schema.tpl.json index b1fc5573..de8b59b0 100644 --- a/schemas/digitalIdentifier/SWHID.schema.tpl.json +++ b/schemas/digitalIdentifier/SWHID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/SWHID", + "_type": "/core/SWHID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/genericIdentifier.tpl.json b/schemas/digitalIdentifier/genericIdentifier.tpl.json index 2f6576f0..c8719c90 100644 --- a/schemas/digitalIdentifier/genericIdentifier.tpl.json +++ b/schemas/digitalIdentifier/genericIdentifier.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/GenericIdentifier", + "_type": "/core/GenericIdentifier", "required": [ "emitter", "identifier" @@ -7,7 +7,7 @@ "properties": { "emitter": { "_instruction": "Add the organization that governs and/or emits the identifier.", - "_linkedTypes": ["https://openminds.ebrains.eu/core/Organization"] + "_linkedTypes": ["/core/Organization"] }, "identifier": { "type": "string", diff --git a/schemas/digitalIdentifier/stockNumber.schema.tpl.json b/schemas/digitalIdentifier/stockNumber.schema.tpl.json index f5736491..07b3de35 100644 --- a/schemas/digitalIdentifier/stockNumber.schema.tpl.json +++ b/schemas/digitalIdentifier/stockNumber.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/StockNumber", + "_type": "/core/StockNumber", "required": [ "identifier", "vendor" @@ -12,7 +12,7 @@ "vendor": { "_instruction": "Add the vendor that has the item with this identifier in stock.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Organization" + "/core/Organization" ] } } diff --git a/schemas/miscellaneous/comment.schema.tpl.json b/schemas/miscellaneous/comment.schema.tpl.json index 9bddfa78..d8af7273 100644 --- a/schemas/miscellaneous/comment.schema.tpl.json +++ b/schemas/miscellaneous/comment.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Comment", + "_type": "/core/Comment", "required": [ "about", "comment", @@ -20,7 +20,7 @@ "commenter": { "_instruction": "Add the person that created this comment.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Person" + "/core/Person" ] }, "timestamp": { diff --git a/schemas/miscellaneous/funding.schema.tpl.json b/schemas/miscellaneous/funding.schema.tpl.json index c3d1c340..f202ff59 100644 --- a/schemas/miscellaneous/funding.schema.tpl.json +++ b/schemas/miscellaneous/funding.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Funding", + "_type": "/core/Funding", "required": [ "funder" ], diff --git a/schemas/miscellaneous/quantitativeValue.schema.tpl.json b/schemas/miscellaneous/quantitativeValue.schema.tpl.json index 56e16286..7c2a1ba0 100644 --- a/schemas/miscellaneous/quantitativeValue.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValue.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/QuantitativeValue", + "_type": "/core/QuantitativeValue", "required": [ "value" ], @@ -7,7 +7,7 @@ "typeOfUncertainty": { "_instruction": "Add the type of uncertainty used to determine the uncertainty for this quantitative value.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TypeOfUncertainty" + "/controlledTerms/TypeOfUncertainty" ] }, "uncertainty": { @@ -22,7 +22,7 @@ "unit": { "_instruction": "Add the unit of measurement of this quantitative value and its uncertainty.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement" + "/controlledTerms/UnitOfMeasurement" ] }, "value": { diff --git a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json index b2364732..db9a6509 100644 --- a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/QuantitativeValueArray", + "_type": "/core/QuantitativeValueArray", "required": [ "values" ], @@ -23,13 +23,13 @@ "typeOfUncertainty": { "_instruction": "Add the type of estimation for the uncertainties.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TypeOfUncertainty" + "/controlledTerms/TypeOfUncertainty" ] }, "unit": { "_instruction": "Add the unit of measurement of the values and their uncertainties.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement" + "/controlledTerms/UnitOfMeasurement" ] }, "values": { diff --git a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json index ae50caab..fe29e8a2 100644 --- a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/QuantitativeValueRange", + "_type": "/core/QuantitativeValueRange", "required": [ "maxValue", "minValue" @@ -12,7 +12,7 @@ "maxValueUnit": { "_instruction": "Add the unit of measurement for the maximum value.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement" + "/controlledTerms/UnitOfMeasurement" ] }, "minValue": { @@ -22,7 +22,7 @@ "minValueUnit": { "_instruction": "Add the unit of measurement for the minimum value.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/UnitOfMeasurement" + "/controlledTerms/UnitOfMeasurement" ] } } diff --git a/schemas/miscellaneous/researchProductGroup.schema.tpl.json b/schemas/miscellaneous/researchProductGroup.schema.tpl.json index c79722b8..184e969d 100644 --- a/schemas/miscellaneous/researchProductGroup.schema.tpl.json +++ b/schemas/miscellaneous/researchProductGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ResearchProductGroup", + "_type": "/core/ResearchProductGroup", "required": [ "context", "hasPart" diff --git a/schemas/miscellaneous/webResource.schema.tpl.json b/schemas/miscellaneous/webResource.schema.tpl.json index 258a1257..2c36f1e9 100644 --- a/schemas/miscellaneous/webResource.schema.tpl.json +++ b/schemas/miscellaneous/webResource.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/WebResource", + "_type": "/core/WebResource", "required": [ "IRI" ], @@ -11,7 +11,7 @@ "format": { "_instruction": "Add the expected content type of the document at this web resource.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "IRI": { diff --git a/schemas/products/dataset.schema.tpl.json b/schemas/products/dataset.schema.tpl.json index fdddb720..dd0384b2 100644 --- a/schemas/products/dataset.schema.tpl.json +++ b/schemas/products/dataset.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Dataset", + "_type": "/core/Dataset", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "author" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/IdentifiersDotOrgID" + "/core/DOI", + "/core/IdentifiersDotOrgID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this dataset.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DatasetVersion" + "/core/DatasetVersion" ] } } diff --git a/schemas/products/datasetVersion.schema.tpl.json b/schemas/products/datasetVersion.schema.tpl.json index d780e631..603ff5b9 100644 --- a/schemas/products/datasetVersion.schema.tpl.json +++ b/schemas/products/datasetVersion.schema.tpl.json @@ -1,7 +1,7 @@ { - "_type": "https://openminds.ebrains.eu/core/DatasetVersion", + "_type": "/core/DatasetVersion", "_extends": "products/researchProductVersion.schema.tpl.json", - "required": [ + "required": [ "dataType", "digitalIdentifier", "ethicsAssessment", @@ -25,29 +25,29 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed in this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/BehavioralProtocol" + "/core/BehavioralProtocol" ] - }, + }, "dataType": { "type": "array", "minItems": 1, "uniqueItems": true, "_instruction": "Add all semantic data types (raw, derived and/or simulated) provided in this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SemanticDataType" + "/controlledTerms/SemanticDataType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/IdentifiersDotOrgID" + "/core/DOI", + "/core/IdentifiersDotOrgID" ] }, "ethicsAssessment": { "_instruction": "Add the result of the ethics assessment of this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/EthicsAssessment" + "/controlledTerms/EthicsAssessment" ] }, "experimentalApproach": { @@ -56,23 +56,23 @@ "uniqueItems": true, "_instruction": "Add all experimental approaches which this dataset version has deployed.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach" + "/controlledTerms/ExperimentalApproach" ] - }, + }, "inputData": { "type": "array", "minItems": 1, "uniqueItems": true, "_instruction": "Add the data that was used as input for this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/WebResource", - "https://openminds.ebrains.eu/sands/BrainAtlas", - "https://openminds.ebrains.eu/sands/BrainAtlasVersion", - "https://openminds.ebrains.eu/sands/CommonCoordinateSpace", - "https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion" + "/core/DOI", + "/core/File", + "/core/FileBundle", + "/core/WebResource", + "/sands/BrainAtlas", + "/sands/BrainAtlasVersion", + "/sands/CommonCoordinateSpace", + "/sands/CommonCoordinateSpaceVersion" ] }, "isAlternativeVersionOf": { @@ -81,20 +81,20 @@ "uniqueItems": true, "_instruction": "Add all dataset versions that can be used alternatively to this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DatasetVersion" + "/core/DatasetVersion" ] }, "isNewVersionOf": { "_instruction": "Add the dataset version preceding this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DatasetVersion" + "/core/DatasetVersion" ] }, "license": { "_instruction": "Add the license or an online available data usage agreement for this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/License", - "https://openminds.ebrains.eu/core/WebResource" + "/core/License", + "/core/WebResource" ] }, "preparationDesign": { @@ -103,7 +103,7 @@ "uniqueItems": true, "_instruction": "Add all preparation types used in this dataset version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/PreparationType" + "/controlledTerms/PreparationType" ] }, "protocol": { @@ -112,7 +112,7 @@ "uniqueItems": true, "_instruction": "Add all protocols that were performed in this dataset version (e.g., for data acquisition or processing).", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Protocol" + "/core/Protocol" ] }, "studiedSpecimen": { @@ -121,10 +121,10 @@ "uniqueItems": true, "_instruction": "Add all specimens or sets of specimen that were studied in this dataset.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Subject", - "https://openminds.ebrains.eu/core/SubjectGroup", - "https://openminds.ebrains.eu/core/TissueSample", - "https://openminds.ebrains.eu/core/TissueSampleCollection" + "/core/Subject", + "/core/SubjectGroup", + "/core/TissueSample", + "/core/TissueSampleCollection" ] }, "studyTarget": { diff --git a/schemas/products/device.schema.tpl.json b/schemas/products/device.schema.tpl.json index 109f967e..ce3c649f 100644 --- a/schemas/products/device.schema.tpl.json +++ b/schemas/products/device.schema.tpl.json @@ -14,14 +14,14 @@ "deviceType": { "_instruction": "Add the type of this device.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/DeviceType" + "/controlledTerms/DeviceType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this device.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/RRID" + "/core/DOI", + "/core/RRID" ] }, "lookupLabel": { diff --git a/schemas/products/metaDataModel.schema.tpl.json b/schemas/products/metaDataModel.schema.tpl.json index ddc4fd7d..30386728 100644 --- a/schemas/products/metaDataModel.schema.tpl.json +++ b/schemas/products/metaDataModel.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/MetaDataModel", + "_type": "/core/MetaDataModel", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/SWHID" + "/core/DOI", + "/core/SWHID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this (meta)data model.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/MetaDataModelVersion" + "/core/MetaDataModelVersion" ] } } diff --git a/schemas/products/metaDataModelVersion.schema.tpl.json b/schemas/products/metaDataModelVersion.schema.tpl.json index 525b39d2..aad8e2a9 100644 --- a/schemas/products/metaDataModelVersion.schema.tpl.json +++ b/schemas/products/metaDataModelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/MetaDataModelVersion", + "_type": "/core/MetaDataModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "license", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/SWHID" + "/core/DOI", + "/core/SWHID" ] }, "isAlternativeVersionOf": { @@ -28,19 +28,19 @@ "uniqueItems": true, "_instruction": "Add all (meta)data model versions that can be used alternatively to this (meta)data model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/MetaDataModelVersion" + "/core/MetaDataModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the (meta)data version preceding this (meta)data model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/MetaDataModelVersion" + "/core/MetaDataModelVersion" ] }, "license": { "_instruction": "Add the license of this (meta)data model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/License" + "/core/License" ] }, "serializationFormat": { @@ -49,7 +49,7 @@ "uniqueItems": true, "_instruction": "Add all content types in which (meta)data compliant with this (meta)data model version can be stored in.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "specificationFormat": { @@ -58,13 +58,13 @@ "uniqueItems": true, "_instruction": "Add all content types in which the schemas of this (meta)data model version are stored in.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "type": { "_instruction": "Add the type of this (meta)data model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/MetaDataModelType" + "/controlledTerms/MetaDataModelType" ] } } diff --git a/schemas/products/model.schema.tpl.json b/schemas/products/model.schema.tpl.json index 251f2d6f..64825918 100644 --- a/schemas/products/model.schema.tpl.json +++ b/schemas/products/model.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Model", + "_type": "/core/Model", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "abstractionLevel", @@ -11,7 +11,7 @@ "abstractionLevel": { "_instruction": "Add the abstraction level of this computational model.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ModelAbstractionLevel" + "/controlledTerms/ModelAbstractionLevel" ] }, "developer": { @@ -26,8 +26,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/SWHID" + "/core/DOI", + "/core/SWHID" ] }, "hasVersion": { @@ -36,13 +36,13 @@ "uniqueItems": true, "_instruction": "Add all versions of this computational model.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ModelVersion" + "/core/ModelVersion" ] }, "scope": { "_instruction": "Add the scope of this computational model.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ModelScope" + "/controlledTerms/ModelScope" ] }, "studyTarget": { diff --git a/schemas/products/modelVersion.schema.tpl.json b/schemas/products/modelVersion.schema.tpl.json index 93748dfd..69657702 100644 --- a/schemas/products/modelVersion.schema.tpl.json +++ b/schemas/products/modelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ModelVersion", + "_type": "/core/ModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "format", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/SWHID" + "/core/DOI", + "/core/SWHID" ] }, "format": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add the content type of this computational model version, or the content types of the files composing the model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "inputData": { @@ -37,10 +37,10 @@ "uniqueItems": true, "_instruction": "Add the data that was used as input for this computational model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/WebResource" + "/core/DOI", + "/core/File", + "/core/FileBundle", + "/core/WebResource" ] }, "isAlternativeVersionOf": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all computational model versions that can be used alternatively to this computational model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ModelVersion" + "/core/ModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the computational model version preceding this computational model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ModelVersion" + "/core/ModelVersion" ] }, "license": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this computational model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/License" + "/core/License" ] }, "outputData": { @@ -73,10 +73,10 @@ "uniqueItems": true, "_instruction": "Add the data that was generated as output by this computational model version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/WebResource" + "/core/DOI", + "/core/File", + "/core/FileBundle", + "/core/WebResource" ] } } diff --git a/schemas/products/project.schema.tpl.json b/schemas/products/project.schema.tpl.json index 57a00099..d333a238 100644 --- a/schemas/products/project.schema.tpl.json +++ b/schemas/products/project.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Project", + "_type": "/core/Project", "required": [ "description", "fullName", diff --git a/schemas/products/researchProductVersion.schema.tpl.json b/schemas/products/researchProductVersion.schema.tpl.json index ed27c91c..1daa0d36 100644 --- a/schemas/products/researchProductVersion.schema.tpl.json +++ b/schemas/products/researchProductVersion.schema.tpl.json @@ -14,13 +14,13 @@ "accessibility": { "_instruction": "Add the accessibility of the data for this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ProductAccessibility" + "/controlledTerms/ProductAccessibility" ] }, "copyright": { "_instruction": "Enter the copyright information of this research product version.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Copyright" + "/core/Copyright" ] }, "custodian": { @@ -39,10 +39,10 @@ "fullDocumentation": { "_instruction": "Add the publication or file that acts as the full documentation of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/ISBN", - "https://openminds.ebrains.eu/core/WebResource" + "/core/DOI", + "/core/File", + "/core/ISBN", + "/core/WebResource" ] }, "fullName": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all funding information of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Funding" + "/core/Funding" ] }, "homepage": { @@ -84,7 +84,7 @@ "uniqueItems": true, "_instruction": "Add any other contributions to this research product version that are not covered under 'author'/'developer' or 'custodian'.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/Contribution" + "/core/Contribution" ] }, "relatedPublication": { @@ -106,7 +106,7 @@ "repository": { "_instruction": "Add the file repository of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/FileRepository" + "/core/FileRepository" ] }, "shortName": { diff --git a/schemas/products/setup.schema.tpl.json b/schemas/products/setup.schema.tpl.json index 8188d119..793b0b80 100644 --- a/schemas/products/setup.schema.tpl.json +++ b/schemas/products/setup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Setup", + "_type": "/core/Setup", "_categories": [ "setupComponent" ], @@ -45,7 +45,7 @@ "uniqueItems": true, "_instruction": "Add all types that describe this setup.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SetupType" + "/controlledTerms/SetupType" ] } } diff --git a/schemas/products/software.schema.tpl.json b/schemas/products/software.schema.tpl.json index 81891336..89581f59 100644 --- a/schemas/products/software.schema.tpl.json +++ b/schemas/products/software.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Software", + "_type": "/core/Software", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,9 +17,9 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/RRID", - "https://openminds.ebrains.eu/core/SWHID" + "/core/DOI", + "/core/RRID", + "/core/SWHID" ] }, "hasVersion": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this software tool.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SoftwareVersion" + "/core/SoftwareVersion" ] } } diff --git a/schemas/products/softwareVersion.schema.tpl.json b/schemas/products/softwareVersion.schema.tpl.json index 7abdfd55..baf21e24 100644 --- a/schemas/products/softwareVersion.schema.tpl.json +++ b/schemas/products/softwareVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/SoftwareVersion", + "_type": "/core/SoftwareVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "_categories": [ "setupComponent" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all categories to which this software version belongs.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SoftwareApplicationCategory" + "/controlledTerms/SoftwareApplicationCategory" ] }, "developer": { @@ -38,15 +38,15 @@ "uniqueItems": true, "_instruction": "Add all operating devices compatible with this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/OperatingDevice" + "/controlledTerms/OperatingDevice" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/SWHID", - "https://openminds.ebrains.eu/core/RRID" + "/core/DOI", + "/core/SWHID", + "/core/RRID" ] }, "feature": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all distinguishing characteristics of this software version (e.g., performance, portability or functionality).", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SoftwareFeature" + "/controlledTerms/SoftwareFeature" ] }, "hasPart": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that supplement this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SoftwareVersion" + "/core/SoftwareVersion" ] }, "inputFormat": { @@ -73,7 +73,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "isAlternativeVersionOf": { @@ -82,13 +82,13 @@ "uniqueItems": true, "_instruction": "Add all software versions that can be used alternatively to this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SoftwareVersion" + "/core/SoftwareVersion" ] }, "isNewVersionOf": { "_instruction": "Add the software version preceding this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SoftwareVersion" + "/core/SoftwareVersion" ] }, "language": { @@ -97,7 +97,7 @@ "uniqueItems": true, "_instruction": "Add all languages supported by this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Language" + "/controlledTerms/Language" ] }, "license": { @@ -106,7 +106,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/License" + "/core/License" ] }, "operatingSystem": { @@ -115,7 +115,7 @@ "uniqueItems": true, "_instruction": "Add all operating systems supported by this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/OperatingSystem" + "/controlledTerms/OperatingSystem" ] }, "outputFormat": { @@ -124,7 +124,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "programmingLanguage": { @@ -133,7 +133,7 @@ "uniqueItems": true, "_instruction": "Add all programming languages used to develop this software version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/ProgrammingLanguage" + "/controlledTerms/ProgrammingLanguage" ] }, "requirement": { diff --git a/schemas/products/webService.schema.tpl.json b/schemas/products/webService.schema.tpl.json index 8cb66dbd..9375a65e 100644 --- a/schemas/products/webService.schema.tpl.json +++ b/schemas/products/webService.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/WebService", + "_type": "/core/WebService", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this web service.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/WebServiceVersion" + "/core/WebServiceVersion" ] } } diff --git a/schemas/products/webServiceVersion.schema.tpl.json b/schemas/products/webServiceVersion.schema.tpl.json index f8b84dce..7421d9b5 100644 --- a/schemas/products/webServiceVersion.schema.tpl.json +++ b/schemas/products/webServiceVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/WebServiceVersion", + "_type": "/core/WebServiceVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "properties": { "developer": { @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that are components of this web service version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SoftwareVersion" + "/core/SoftwareVersion" ] }, "inputFormat": { @@ -26,7 +26,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this web service version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "isAlternativeVersionOf": { @@ -35,13 +35,13 @@ "uniqueItems": true, "_instruction": "Add all web service versions that can be used alternatively to this web service version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/WebServiceVersion" + "/core/WebServiceVersion" ] }, "isNewVersionOf": { "_instruction": "Add the web service version preceding this web service version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/WebServiceVersion" + "/core/WebServiceVersion" ] }, "outputFormat": { @@ -50,7 +50,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this web service version.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] } } diff --git a/schemas/research/activity.schema.tpl.json b/schemas/research/activity.schema.tpl.json index e64b44ca..c2b8a45b 100644 --- a/schemas/research/activity.schema.tpl.json +++ b/schemas/research/activity.schema.tpl.json @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add any user-defined parameters grouped in context-specific sets that are not covered in the standardized properties of this activity.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/CustomPropertySet" + "/core/CustomPropertySet" ] }, "description": { @@ -31,8 +31,8 @@ "uniqueItems": true, "_instruction": "Add all inputs used by this activity.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle" + "/core/File", + "/core/FileBundle" ] }, "lookupLabel": { @@ -45,8 +45,8 @@ "uniqueItems": true, "_instruction": "Add all outputs generated by this activity.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle" + "/core/File", + "/core/FileBundle" ] }, "performedBy": { diff --git a/schemas/research/behavioralProtocol.schema.tpl.json b/schemas/research/behavioralProtocol.schema.tpl.json index 92d2707c..5216a673 100644 --- a/schemas/research/behavioralProtocol.schema.tpl.json +++ b/schemas/research/behavioralProtocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/BehavioralProtocol", + "_type": "/core/BehavioralProtocol", "_categories": [ "fileOrigin" ], @@ -14,9 +14,9 @@ "uniqueItems": true, "_instruction": "Add all sources in which this behavioral protocol is described in detail.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/WebResource" + "/core/DOI", + "/core/File", + "/core/WebResource" ] }, "description": { @@ -37,8 +37,8 @@ "uniqueItems": true, "_instruction": "Add all stimulation approaches and/or techniques used within this behavioral protocol.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/StimulationApproach", - "https://openminds.ebrains.eu/controlledTerms/StimulationTechnique" + "/controlledTerms/StimulationApproach", + "/controlledTerms/StimulationTechnique" ] }, "stimulusType": { diff --git a/schemas/research/configuration.schema.tpl.json b/schemas/research/configuration.schema.tpl.json index cacaf48a..f41c249c 100644 --- a/schemas/research/configuration.schema.tpl.json +++ b/schemas/research/configuration.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Configuration", + "_type": "/core/Configuration", "required": [ "configuration", "format" @@ -12,7 +12,7 @@ "format": { "_instruction": "Add the content type of this configuration.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/ContentType" + "/core/ContentType" ] }, "lookupLabel": { diff --git a/schemas/research/customPropertySet.schema.tpl.json b/schemas/research/customPropertySet.schema.tpl.json index 027e5cca..f61cff3c 100644 --- a/schemas/research/customPropertySet.schema.tpl.json +++ b/schemas/research/customPropertySet.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/CustomPropertySet", + "_type": "/core/CustomPropertySet", "required": [ "context", "dataLocation", @@ -13,9 +13,9 @@ "dataLocation": { "_instruction": "Add the location of the data that define the custom property set for the given context (e.g., stored as file or other entities such as property-value lists).", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Configuration", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/PropertyValueList" + "/core/Configuration", + "/core/File", + "/core/PropertyValueList" ] }, "relevantFor": { diff --git a/schemas/research/deviceUsage.schema.tpl.json b/schemas/research/deviceUsage.schema.tpl.json index 6f017053..2a853559 100644 --- a/schemas/research/deviceUsage.schema.tpl.json +++ b/schemas/research/deviceUsage.schema.tpl.json @@ -12,8 +12,8 @@ "uniqueItems": true, "_instruction": "Add all files or file bundles containing additional information about the usage of this device.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle" + "/core/File", + "/core/FileBundle" ] }, "lookupLabel": { @@ -23,8 +23,8 @@ "usedSpecimen": { "_instruction": "Add the state of the tissue sample or subject that this device was used on.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectState", - "https://openminds.ebrains.eu/core/TissueSampleState" + "/core/SubjectState", + "/core/TissueSampleState" ] } } diff --git a/schemas/research/experimentalActivity.schema.tpl.json b/schemas/research/experimentalActivity.schema.tpl.json index 31350d3c..9ceadcdc 100644 --- a/schemas/research/experimentalActivity.schema.tpl.json +++ b/schemas/research/experimentalActivity.schema.tpl.json @@ -8,13 +8,13 @@ "isPartOf": { "_instruction": "Add the dataset version in which this activity was conducted.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DatasetVersion" + "/core/DatasetVersion" ] }, "preparationDesign": { "_instruction": "Add the initial preparation type for this activity.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/PreparationType" + "/controlledTerms/PreparationType" ] }, "protocol": { @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add all protocols used during this activity.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Protocol" + "/core/Protocol" ] } } diff --git a/schemas/research/numericalProperty.schema.tpl.json b/schemas/research/numericalProperty.schema.tpl.json index 36249ca9..0ae04cdd 100644 --- a/schemas/research/numericalProperty.schema.tpl.json +++ b/schemas/research/numericalProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/NumericalProperty", + "_type": "/core/NumericalProperty", "required": [ "name", "value" @@ -14,8 +14,8 @@ "minItems": 1, "_instruction": "Enter all quantitative values that are described by this numerical property.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue", - "https://openminds.ebrains.eu/core/QuantitativeValueRange" + "/core/QuantitativeValue", + "/core/QuantitativeValueRange" ] } } diff --git a/schemas/research/propertyValueList.schema.tpl.json b/schemas/research/propertyValueList.schema.tpl.json index d4b83848..76f3160c 100644 --- a/schemas/research/propertyValueList.schema.tpl.json +++ b/schemas/research/propertyValueList.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/PropertyValueList", + "_type": "/core/PropertyValueList", "required": [ "propertyValuePair" ], @@ -14,8 +14,8 @@ "uniqueItems": true, "_instruction": "Enter all numerical and string property-value pairs that belong to this property-value list.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/NumericalProperty", - "https://openminds.ebrains.eu/core/StringProperty" + "/core/NumericalProperty", + "/core/StringProperty" ] } } diff --git a/schemas/research/protocol.schema.tpl.json b/schemas/research/protocol.schema.tpl.json index cd75a702..22615e76 100644 --- a/schemas/research/protocol.schema.tpl.json +++ b/schemas/research/protocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Protocol", + "_type": "/core/Protocol", "required": [ "description", "name", @@ -9,9 +9,9 @@ "describedIn": { "_instruction": "Add a publication or file in which this protocol is (originally) described in detail.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/DOI", - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/WebResource" + "/core/DOI", + "/core/File", + "/core/WebResource" ] }, "description": { diff --git a/schemas/research/protocolExecution.schema.tpl.json b/schemas/research/protocolExecution.schema.tpl.json index 57ddb1e4..e02d08c3 100644 --- a/schemas/research/protocolExecution.schema.tpl.json +++ b/schemas/research/protocolExecution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/ProtocolExecution", + "_type": "/core/ProtocolExecution", "_extends": "research/experimentalActivity.schema.tpl.json", "properties": { "behavioralProtocol": { @@ -8,29 +8,29 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed during this protocol execution.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/BehavioralProtocol" + "/core/BehavioralProtocol" ] }, "input": { "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/SubjectGroupState", - "https://openminds.ebrains.eu/core/SubjectState", - "https://openminds.ebrains.eu/core/TissueSampleCollectionState", - "https://openminds.ebrains.eu/core/TissueSampleState", - "https://openminds.ebrains.eu/sands/BrainAtlasVersion", - "https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion" + "/core/File", + "/core/FileBundle", + "/core/SubjectGroupState", + "/core/SubjectState", + "/core/TissueSampleCollectionState", + "/core/TissueSampleState", + "/sands/BrainAtlasVersion", + "/sands/CommonCoordinateSpaceVersion" ] }, "output": { "_linkedTypes": [ - "https://openminds.ebrains.eu/core/File", - "https://openminds.ebrains.eu/core/FileBundle", - "https://openminds.ebrains.eu/core/SubjectGroupState", - "https://openminds.ebrains.eu/core/SubjectState", - "https://openminds.ebrains.eu/core/TissueSampleCollectionState", - "https://openminds.ebrains.eu/core/TissueSampleState" + "/core/File", + "/core/FileBundle", + "/core/SubjectGroupState", + "/core/SubjectState", + "/core/TissueSampleCollectionState", + "/core/TissueSampleState" ] } } diff --git a/schemas/research/specimen.schema.tpl.json b/schemas/research/specimen.schema.tpl.json index 9653b3e3..8d04e884 100644 --- a/schemas/research/specimen.schema.tpl.json +++ b/schemas/research/specimen.schema.tpl.json @@ -9,7 +9,7 @@ "biologicalSex": { "_instruction": "Add the biological sex of this specimen.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/BiologicalSex" + "/controlledTerms/BiologicalSex" ] }, "internalIdentifier": { @@ -23,8 +23,8 @@ "species": { "_instruction": "Add the species or strain (a sub-type of a genetic variant of species) of this specimen.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Species", - "https://openminds.ebrains.eu/core/Strain" + "/controlledTerms/Species", + "/core/Strain" ] } } diff --git a/schemas/research/specimenSet.schema.tpl.json b/schemas/research/specimenSet.schema.tpl.json index 7d0be557..42dfe63b 100644 --- a/schemas/research/specimenSet.schema.tpl.json +++ b/schemas/research/specimenSet.schema.tpl.json @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add the biological sex of all specimen in this set.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/BiologicalSex" + "/controlledTerms/BiologicalSex" ] }, "internalIdentifier": { @@ -33,8 +33,8 @@ "uniqueItems": true, "_instruction": "Add the species and/or strain (a sub-type of a genetic variant of species) of all specimen in this set.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Species", - "https://openminds.ebrains.eu/core/Strain" + "/controlledTerms/Species", + "/core/Strain" ] } } diff --git a/schemas/research/specimenState.schema.tpl.json b/schemas/research/specimenState.schema.tpl.json index f4943308..9d85c5f1 100644 --- a/schemas/research/specimenState.schema.tpl.json +++ b/schemas/research/specimenState.schema.tpl.json @@ -10,8 +10,8 @@ "age": { "_instruction": "Enter the age of the specimen (set) in this state.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue", - "https://openminds.ebrains.eu/core/QuantitativeValueRange" + "/core/QuantitativeValue", + "/core/QuantitativeValueRange" ] }, "internalIdentifier": { @@ -28,22 +28,22 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that the specimen (set) in this state has and/or is a model for.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Disease", - "https://openminds.ebrains.eu/controlledTerms/DiseaseModel" + "/controlledTerms/Disease", + "/controlledTerms/DiseaseModel" ] }, "relativeTimeIndication": { "_instruction": "If there is a temporal relation between the states of a specimen (set), enter the relative time that has passed between this and the preceding specimen (set) state referenced under 'descendedFrom'.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue", - "https://openminds.ebrains.eu/core/QuantitativeValueRange" + "/core/QuantitativeValue", + "/core/QuantitativeValueRange" ] }, "weight": { "_instruction": "Enter the weight of the specimen (set) in this state.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/QuantitativeValue", - "https://openminds.ebrains.eu/core/QuantitativeValueRange" + "/core/QuantitativeValue", + "/core/QuantitativeValueRange" ] } } diff --git a/schemas/research/strain.schema.tpl.json b/schemas/research/strain.schema.tpl.json index d3842a5f..0cd571d9 100644 --- a/schemas/research/strain.schema.tpl.json +++ b/schemas/research/strain.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Strain", + "_type": "/core/Strain", "required": [ "geneticStrainType", "name", @@ -22,13 +22,13 @@ "uniqueItems": true, "_instruction": "Add the background strain that explains the majority of the genetic background and/or causes the majority of the prominent traits. If two strains contributed equally, state both.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/Strain" + "/core/Strain" ] }, "breedingType": { "_instruction": "Add the breeding type for this strain.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/BreedingType" + "/controlledTerms/BreedingType" ] }, "description": { @@ -38,7 +38,7 @@ "digitalIdentifier": { "_instruction": "Add the 'Research Resource Identifier' (RRID) of this strain.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/RRID" + "/core/RRID" ] }, "diseaseModel": { @@ -47,14 +47,14 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that this strain is a model for.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Disease", - "https://openminds.ebrains.eu/controlledTerms/DiseaseModel" + "/controlledTerms/Disease", + "/controlledTerms/DiseaseModel" ] }, "geneticStrainType": { "_instruction": "Add the genetic background type of this strain.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/GeneticStrainType" + "/controlledTerms/GeneticStrainType" ] }, "laboratoryCode": { @@ -85,13 +85,13 @@ "species": { "_instruction": "Add the species of this strain.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Species" + "/controlledTerms/Species" ] }, "stockNumber": { "_instruction": "Add the stock number from the vendor the strain was supplied from/is in stock at.", "_embeddedTypes": [ - "https://openminds.ebrains.eu/core/StockNumber" + "/core/StockNumber" ] }, "synonym": { diff --git a/schemas/research/stringProperty.schema.tpl.json b/schemas/research/stringProperty.schema.tpl.json index 97b7f5c0..4269a0db 100644 --- a/schemas/research/stringProperty.schema.tpl.json +++ b/schemas/research/stringProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/StringProperty", + "_type": "/core/StringProperty", "required": [ "name", "value" diff --git a/schemas/research/subject.schema.tpl.json b/schemas/research/subject.schema.tpl.json index 2b6f5788..ddcf1472 100644 --- a/schemas/research/subject.schema.tpl.json +++ b/schemas/research/subject.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/Subject", + "_type": "/core/Subject", "_extends": "research/specimen.schema.tpl.json", "required": [ "studiedState" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all subject groups of which this subject is a member.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectGroup" + "/core/SubjectGroup" ] }, "studiedState": { @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject was studied.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectState" + "/core/SubjectState" ] } } diff --git a/schemas/research/subjectGroup.schema.tpl.json b/schemas/research/subjectGroup.schema.tpl.json index bc30421d..53515620 100644 --- a/schemas/research/subjectGroup.schema.tpl.json +++ b/schemas/research/subjectGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/SubjectGroup", + "_type": "/core/SubjectGroup", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "studiedState" @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject group was studied.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectGroupState" + "/core/SubjectGroupState" ] } } diff --git a/schemas/research/subjectGroupState.schema.tpl.json b/schemas/research/subjectGroupState.schema.tpl.json index ec2b4d4c..f3305698 100644 --- a/schemas/research/subjectGroupState.schema.tpl.json +++ b/schemas/research/subjectGroupState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/SubjectGroupState", + "_type": "/core/SubjectGroupState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/AgeCategory" + "/controlledTerms/AgeCategory" ] }, "attribute": { @@ -20,13 +20,13 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject group state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute" + "/controlledTerms/SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject group state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectGroupState" + "/core/SubjectGroupState" ] }, "handedness": { @@ -35,7 +35,7 @@ "uniqueItems": true, "_instruction": "Add all preferred types of handedness of the subject group in this state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Handedness" + "/controlledTerms/Handedness" ] } } diff --git a/schemas/research/subjectState.schema.tpl.json b/schemas/research/subjectState.schema.tpl.json index 9068a744..a2c2371e 100644 --- a/schemas/research/subjectState.schema.tpl.json +++ b/schemas/research/subjectState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/SubjectState", + "_type": "/core/SubjectState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -8,7 +8,7 @@ "ageCategory": { "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/AgeCategory" + "/controlledTerms/AgeCategory" ] }, "attribute": { @@ -17,19 +17,19 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/SubjectAttribute" + "/controlledTerms/SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectState" + "/core/SubjectState" ] }, "handedness": { "_instruction": "Add the preferred handedness of the subject in this state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Handedness" + "/controlledTerms/Handedness" ] } } diff --git a/schemas/research/tissueSample.schema.tpl.json b/schemas/research/tissueSample.schema.tpl.json index 652cc376..b47ae145 100644 --- a/schemas/research/tissueSample.schema.tpl.json +++ b/schemas/research/tissueSample.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/TissueSample", + "_type": "/core/TissueSample", "_extends": "research/specimen.schema.tpl.json", "required": [ "origin", @@ -22,7 +22,7 @@ "uniqueItems": true, "_instruction": "Add all tissue sample collections this tissue sample is part of.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/TissueSampleCollection" + "/core/TissueSampleCollection" ] }, "laterality": { @@ -32,15 +32,15 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample originates from.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Laterality" + "/controlledTerms/Laterality" ] }, "origin": { "_instruction": "Add the biogical origin of this tissue sample.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/CellType", - "https://openminds.ebrains.eu/controlledTerms/Organ", - "https://openminds.ebrains.eu/controlledTerms/OrganismSubstance" + "/controlledTerms/CellType", + "/controlledTerms/Organ", + "/controlledTerms/OrganismSubstance" ] }, "studiedState": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample was studied.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/TissueSampleState" + "/core/TissueSampleState" ] }, "type": { "_instruction": "Add the type of this tissue sample.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TissueSampleType" + "/controlledTerms/TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollection.schema.tpl.json b/schemas/research/tissueSampleCollection.schema.tpl.json index dd40e6a9..1b8fa8dc 100644 --- a/schemas/research/tissueSampleCollection.schema.tpl.json +++ b/schemas/research/tissueSampleCollection.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/TissueSampleCollection", + "_type": "/core/TissueSampleCollection", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "origin", @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample collection originates from.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/Laterality" + "/controlledTerms/Laterality" ] }, "numberOfTissueSamples": { @@ -37,9 +37,9 @@ "uniqueItems": true, "_instruction": "Add the biogical origin of all tissue samples in this collection.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/CellType", - "https://openminds.ebrains.eu/controlledTerms/Organ", - "https://openminds.ebrains.eu/controlledTerms/OrganismSubstance" + "/controlledTerms/CellType", + "/controlledTerms/Organ", + "/controlledTerms/OrganismSubstance" ] }, "studiedState": { @@ -48,7 +48,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample collection was studied.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/TissueSampleCollectionState" + "/core/TissueSampleCollectionState" ] }, "type": { @@ -57,7 +57,7 @@ "uniqueItems": true, "_instruction": "Add the type of all tissue samples in this collection.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TissueSampleType" + "/controlledTerms/TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollectionState.schema.tpl.json b/schemas/research/tissueSampleCollectionState.schema.tpl.json index 780d11dd..fe4b5d03 100644 --- a/schemas/research/tissueSampleCollectionState.schema.tpl.json +++ b/schemas/research/tissueSampleCollectionState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/TissueSampleCollectionState", + "_type": "/core/TissueSampleCollectionState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample collection state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TissueSampleAttribute" + "/controlledTerms/TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample collection state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectGroupState", - "https://openminds.ebrains.eu/core/SubjectState", - "https://openminds.ebrains.eu/core/TissueSampleCollectionState", - "https://openminds.ebrains.eu/core/TissueSampleState" + "/core/SubjectGroupState", + "/core/SubjectState", + "/core/TissueSampleCollectionState", + "/core/TissueSampleState" ] } } diff --git a/schemas/research/tissueSampleState.schema.tpl.json b/schemas/research/tissueSampleState.schema.tpl.json index 27856b61..6628b58b 100644 --- a/schemas/research/tissueSampleState.schema.tpl.json +++ b/schemas/research/tissueSampleState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "https://openminds.ebrains.eu/core/TissueSampleState", + "_type": "/core/TissueSampleState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/controlledTerms/TissueSampleAttribute" + "/controlledTerms/TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample state.", "_linkedTypes": [ - "https://openminds.ebrains.eu/core/SubjectGroupState", - "https://openminds.ebrains.eu/core/SubjectState", - "https://openminds.ebrains.eu/core/TissueSampleCollectionState", - "https://openminds.ebrains.eu/core/TissueSampleState" + "/core/SubjectGroupState", + "/core/SubjectState", + "/core/TissueSampleCollectionState", + "/core/TissueSampleState" ] } } diff --git a/version.txt b/version.txt index c694117f..47e5d40a 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -v4 +v5 From 58d3aba34de95c4e6683dd0139f8ed4227097926 Mon Sep 17 00:00:00 2001 From: raphaelgazzotti Date: Mon, 9 Sep 2024 16:13:09 +0200 Subject: [PATCH 2/4] Removal of submodule name in paths. --- .../actors/accountInformation.schema.tpl.json | 4 +- schemas/actors/affiliation.schema.tpl.json | 6 +-- schemas/actors/consortium.schema.tpl.json | 4 +- .../actors/contactInformation.schema.tpl.json | 2 +- schemas/actors/contribution.schema.tpl.json | 4 +- schemas/actors/organization.schema.tpl.json | 12 ++--- schemas/actors/person.schema.tpl.json | 10 ++-- schemas/data/contentType.schema.tpl.json | 4 +- .../data/contentTypePattern.schema.tpl.json | 4 +- schemas/data/copyright.schema.tpl.json | 2 +- schemas/data/file.schema.tpl.json | 16 +++--- schemas/data/fileArchive.schema.tpl.json | 6 +-- schemas/data/fileBundle.schema.tpl.json | 14 +++--- schemas/data/filePathPattern.schema.tpl.json | 4 +- schemas/data/fileRepository.schema.tpl.json | 16 +++--- .../fileRepositoryStructure.schema.tpl.json | 4 +- schemas/data/hash.schema.tpl.json | 2 +- schemas/data/license.schema.tpl.json | 2 +- schemas/data/measurement.schema.tpl.json | 8 +-- schemas/data/serviceLink.schema.tpl.json | 18 +++---- schemas/digitalIdentifier/DOI.schema.tpl.json | 2 +- .../digitalIdentifier/GRIDID.schema.tpl.json | 2 +- .../digitalIdentifier/HANDLE.schema.tpl.json | 2 +- .../digitalIdentifier/ISBN.schema.tpl.json | 2 +- .../digitalIdentifier/ISSN.schema.tpl.json | 2 +- .../IdentifiersDotOrgID.schema.tpl.json | 2 +- .../digitalIdentifier/ORCID.schema.tpl.json | 2 +- .../digitalIdentifier/RORID.schema.tpl.json | 2 +- .../digitalIdentifier/RRID.schema.tpl.json | 2 +- .../digitalIdentifier/SWHID.schema.tpl.json | 2 +- .../genericIdentifier.tpl.json | 6 ++- .../stockNumber.schema.tpl.json | 4 +- schemas/miscellaneous/comment.schema.tpl.json | 4 +- schemas/miscellaneous/funding.schema.tpl.json | 2 +- .../quantitativeValue.schema.tpl.json | 6 +-- .../quantitativeValueArray.schema.tpl.json | 10 ++-- .../quantitativeValueRange.schema.tpl.json | 6 +-- .../researchProductGroup.schema.tpl.json | 2 +- .../miscellaneous/webResource.schema.tpl.json | 4 +- schemas/products/dataset.schema.tpl.json | 8 +-- .../products/datasetVersion.schema.tpl.json | 50 +++++++++---------- schemas/products/device.schema.tpl.json | 6 +-- .../products/metaDataModel.schema.tpl.json | 8 +-- .../metaDataModelVersion.schema.tpl.json | 18 +++---- schemas/products/model.schema.tpl.json | 12 ++--- schemas/products/modelVersion.schema.tpl.json | 30 +++++------ schemas/products/project.schema.tpl.json | 2 +- .../researchProductVersion.schema.tpl.json | 18 +++---- schemas/products/setup.schema.tpl.json | 4 +- schemas/products/software.schema.tpl.json | 10 ++-- .../products/softwareVersion.schema.tpl.json | 32 ++++++------ schemas/products/webService.schema.tpl.json | 4 +- .../webServiceVersion.schema.tpl.json | 12 ++--- schemas/research/activity.schema.tpl.json | 10 ++-- .../behavioralProtocol.schema.tpl.json | 12 ++--- .../research/configuration.schema.tpl.json | 4 +- .../customPropertySet.schema.tpl.json | 8 +-- schemas/research/deviceUsage.schema.tpl.json | 8 +-- .../experimentalActivity.schema.tpl.json | 6 +-- .../numericalProperty.schema.tpl.json | 6 +-- .../propertyValueList.schema.tpl.json | 6 +-- schemas/research/protocol.schema.tpl.json | 8 +-- .../protocolExecution.schema.tpl.json | 32 ++++++------ schemas/research/specimen.schema.tpl.json | 6 +-- schemas/research/specimenSet.schema.tpl.json | 6 +-- .../research/specimenState.schema.tpl.json | 16 +++--- schemas/research/strain.schema.tpl.json | 18 +++---- .../research/stringProperty.schema.tpl.json | 2 +- schemas/research/subject.schema.tpl.json | 6 +-- schemas/research/subjectGroup.schema.tpl.json | 4 +- .../subjectGroupState.schema.tpl.json | 10 ++-- schemas/research/subjectState.schema.tpl.json | 10 ++-- schemas/research/tissueSample.schema.tpl.json | 16 +++--- .../tissueSampleCollection.schema.tpl.json | 14 +++--- ...issueSampleCollectionState.schema.tpl.json | 12 ++--- .../tissueSampleState.schema.tpl.json | 12 ++--- 76 files changed, 327 insertions(+), 325 deletions(-) diff --git a/schemas/actors/accountInformation.schema.tpl.json b/schemas/actors/accountInformation.schema.tpl.json index 92a4b997..39d9b46b 100644 --- a/schemas/actors/accountInformation.schema.tpl.json +++ b/schemas/actors/accountInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/AccountInformation", + "_type": "AccountInformation", "required": [ "service", "userName" @@ -8,7 +8,7 @@ "service": { "_instruction": "Add the web service of this account.", "_linkedTypes": [ - "/core/WebService" + "WebService" ] }, "userName": { diff --git a/schemas/actors/affiliation.schema.tpl.json b/schemas/actors/affiliation.schema.tpl.json index 4a8fe39c..b14d3cf4 100644 --- a/schemas/actors/affiliation.schema.tpl.json +++ b/schemas/actors/affiliation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Affiliation", + "_type": "Affiliation", "required": [ "memberOf" ], @@ -14,8 +14,8 @@ "memberOf": { "_instruction": "Add the organization or consortium another party was or still is a member of.", "_linkedTypes": [ - "/core/Consortium", - "/core/Organization" + "Consortium", + "Organization" ] }, "startDate": { diff --git a/schemas/actors/consortium.schema.tpl.json b/schemas/actors/consortium.schema.tpl.json index 4668a1d6..7b3028f8 100644 --- a/schemas/actors/consortium.schema.tpl.json +++ b/schemas/actors/consortium.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Consortium", + "_type": "Consortium", "_categories": [ "legalPerson" ], @@ -10,7 +10,7 @@ "contactInformation": { "_instruction": "Add the contact information of this consortium.", "_linkedTypes": [ - "/core/ContactInformation" + "ContactInformation" ] }, "fullName": { diff --git a/schemas/actors/contactInformation.schema.tpl.json b/schemas/actors/contactInformation.schema.tpl.json index ed7a3d8f..1aa2a16d 100644 --- a/schemas/actors/contactInformation.schema.tpl.json +++ b/schemas/actors/contactInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ContactInformation", + "_type": "ContactInformation", "required": [ "email" ], diff --git a/schemas/actors/contribution.schema.tpl.json b/schemas/actors/contribution.schema.tpl.json index 345d280f..42a7f9d5 100644 --- a/schemas/actors/contribution.schema.tpl.json +++ b/schemas/actors/contribution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Contribution", + "_type": "Contribution", "required": [ "contributor", "type" @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add the party that performed the contribution.", "_linkedTypes": [ - "/controlledTerms/ContributionType" + "ContributionType" ] } } diff --git a/schemas/actors/organization.schema.tpl.json b/schemas/actors/organization.schema.tpl.json index 41332cc5..249cf39d 100644 --- a/schemas/actors/organization.schema.tpl.json +++ b/schemas/actors/organization.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Organization", + "_type": "Organization", "_categories": [ "legalPerson" ], @@ -13,7 +13,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if necessary, past affiliations of this organization.", "_embeddedTypes": [ - "/core/Affiliation" + "Affiliation" ] }, "digitalIdentifier": { @@ -22,9 +22,9 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this organization.", "_linkedTypes": [ - "/core/GRIDID", - "/core/RORID", - "/core/RRID" + "GRIDID", + "RORID", + "RRID" ] }, "fullName": { @@ -37,7 +37,7 @@ "uniqueItems": true, "_instruction": "Add all parent organizations of this organization.", "_linkedTypes": [ - "/core/Organization" + "Organization" ] }, "homepage": { diff --git a/schemas/actors/person.schema.tpl.json b/schemas/actors/person.schema.tpl.json index 383f5015..8134c431 100644 --- a/schemas/actors/person.schema.tpl.json +++ b/schemas/actors/person.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Person", + "_type": "Person", "_categories": [ "agent", "legalPerson" @@ -14,7 +14,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if desired, past affiliations of this person.", "_embeddedTypes": [ - "/core/Affiliation" + "Affiliation" ] }, "alternateName": { @@ -32,13 +32,13 @@ "uniqueItems": true, "_instruction": "Add the information about web service accounts held by this person.", "_linkedTypes": [ - "/core/AccountInformation" + "AccountInformation" ] }, "contactInformation": { "_instruction": "Add the contact information of this person.", "_linkedTypes": [ - "/core/ContactInformation" + "ContactInformation" ] }, "digitalIdentifier": { @@ -47,7 +47,7 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this person.", "_linkedTypes": [ - "/core/ORCID" + "ORCID" ] }, "familyName": { diff --git a/schemas/data/contentType.schema.tpl.json b/schemas/data/contentType.schema.tpl.json index 4742550b..5327a3d3 100644 --- a/schemas/data/contentType.schema.tpl.json +++ b/schemas/data/contentType.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ContentType", + "_type": "ContentType", "required": [ "name" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all data types that may be represented via this content type.", "_linkedTypes": [ - "/controlledTerms/DataType" + "DataType" ] }, "description": { diff --git a/schemas/data/contentTypePattern.schema.tpl.json b/schemas/data/contentTypePattern.schema.tpl.json index 5ce6b3bf..d0d5ce26 100644 --- a/schemas/data/contentTypePattern.schema.tpl.json +++ b/schemas/data/contentTypePattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ContentTypePattern", + "_type": "ContentTypePattern", "required": [ "contentType", "regex" @@ -8,7 +8,7 @@ "contentType": { "_instruction": "Add the content type that can be defined by the regular expression of this content type pattern (e.g., for file extensions).", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "lookupLabel": { diff --git a/schemas/data/copyright.schema.tpl.json b/schemas/data/copyright.schema.tpl.json index ef5b64d9..130a143b 100644 --- a/schemas/data/copyright.schema.tpl.json +++ b/schemas/data/copyright.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Copyright", + "_type": "Copyright", "required": [ "holder", "year" diff --git a/schemas/data/file.schema.tpl.json b/schemas/data/file.schema.tpl.json index be7542b5..6000f048 100644 --- a/schemas/data/file.schema.tpl.json +++ b/schemas/data/file.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/File", + "_type": "File", "_categories": [ "fileOrigin" ], @@ -18,19 +18,19 @@ "uniqueItems": true, "_instruction": "Add all data types that are specifically represented in this file instance.", "_linkedTypes": [ - "/controlledTerms/DataType" + "DataType" ] }, "fileRepository": { "_instruction": "Add the overarching repository to which this file instance belongs.", "_linkedTypes": [ - "/core/FileRepository" + "FileRepository" ] }, "format": { "_instruction": "Add the content type of this file instance.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "hash": { @@ -39,7 +39,7 @@ "uniqueItems": true, "_instruction": "Add all hashes that were generated for this file instance.", "_embeddedTypes": [ - "/core/Hash" + "Hash" ] }, "IRI": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all file bundles in which this file instance is grouped into.", "_linkedTypes": [ - "/core/FileBundle" + "FileBundle" ] }, "name": { @@ -65,13 +65,13 @@ "specialUsageRole": { "_instruction": "Add the special usage role of this file instance.", "_linkedTypes": [ - "/controlledTerms/FileUsageRole" + "FileUsageRole" ] }, "storageSize": { "_instruction": "Enter the storage size of this file instance.", "_embeddedTypes": [ - "/core/QuantitativeValue" + "QuantitativeValue" ] } } diff --git a/schemas/data/fileArchive.schema.tpl.json b/schemas/data/fileArchive.schema.tpl.json index 83e7479a..462da64e 100644 --- a/schemas/data/fileArchive.schema.tpl.json +++ b/schemas/data/fileArchive.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/FileArchive", + "_type": "FileArchive", "required": [ "format", "IRI" @@ -8,7 +8,7 @@ "format": { "_instruction": "Add the content type of this file archive.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "IRI": { @@ -24,7 +24,7 @@ "uniqueItems": true, "_instruction": "Add the data that were ingested and modified to create this file archive.", "_linkedTypes": [ - "/core/File" + "File" ] } } diff --git a/schemas/data/fileBundle.schema.tpl.json b/schemas/data/fileBundle.schema.tpl.json index 5c2cf622..00413367 100644 --- a/schemas/data/fileBundle.schema.tpl.json +++ b/schemas/data/fileBundle.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/FileBundle", + "_type": "FileBundle", "_categories": [ "fileOrigin" ], @@ -15,7 +15,7 @@ "format": { "_instruction": "If the files within this bundle are organised and formatted according to a formal data structure, add the content type of this file bundle. Leave blank if no formal data structure has been applied to the files within this bundle.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "groupedBy": { @@ -35,20 +35,20 @@ "uniqueItems": true, "_instruction": "Add all grouping types that were used to define this file bundle. Note that the grouping types define the possible schema type of the instances stated under 'groupedBy'.", "_linkedTypes": [ - "/controlledTerms/FileBundleGrouping" + "FileBundleGrouping" ] }, "hash": { "_instruction": "Add the hash that was generated for this file bundle.", "_embeddedTypes": [ - "/core/Hash" + "Hash" ] }, "isPartOf": { "_instruction": "Add the file bundle or file repository this file bundle is part of.", "_linkedTypes": [ - "/core/FileBundle", - "/core/FileRepository" + "FileBundle", + "FileRepository" ] }, "name": { @@ -58,7 +58,7 @@ "storageSize": { "_instruction": "Enter the storage size of this file bundle.", "_embeddedTypes": [ - "/core/QuantitativeValue" + "QuantitativeValue" ] } } diff --git a/schemas/data/filePathPattern.schema.tpl.json b/schemas/data/filePathPattern.schema.tpl.json index 7aa3f3a4..12a4c10a 100644 --- a/schemas/data/filePathPattern.schema.tpl.json +++ b/schemas/data/filePathPattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/FilePathPattern", + "_type": "FilePathPattern", "required": [ "groupingType", "regex" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all grouping types that are defined by this file path pattern.", "_linkedTypes": [ - "/controlledTerms/FileBundleGrouping" + "FileBundleGrouping" ] }, "regex": { diff --git a/schemas/data/fileRepository.schema.tpl.json b/schemas/data/fileRepository.schema.tpl.json index 1ebf3646..5110e0fc 100644 --- a/schemas/data/fileRepository.schema.tpl.json +++ b/schemas/data/fileRepository.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/FileRepository", + "_type": "FileRepository", "required": [ "hostedBy", "IRI", @@ -9,19 +9,19 @@ "format": { "_instruction": "If the files and file bundles within this repository are organised and formatted according to a formal data structure, add the content type of this formal data structure. Leave blank if no formal data structure has been applied.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "hash": { "_instruction": "Add the hash that was generated for this file repository.", "_embeddedTypes": [ - "/core/Hash" + "Hash" ] }, "hostedBy": { "_instruction": "Add the host organization of this file repository.", "_linkedTypes": [ - "/core/Organization" + "Organization" ] }, "IRI": { @@ -41,25 +41,25 @@ "uniqueItems": true, "_instruction": "Add all content type patterns that identify matching content types for files within this file repository.", "_linkedTypes": [ - "/core/ContentTypePattern" + "ContentTypePattern" ] }, "storageSize": { "_instruction": "Enter the storage size of this file repository.", "_embeddedTypes": [ - "/core/QuantitativeValue" + "QuantitativeValue" ] }, "structurePattern": { "_instruction": "Add the file repository structure that identifies the file path patterns used in this file repository.", "_linkedTypes": [ - "/core/FileRepositoryStructure" + "FileRepositoryStructure" ] }, "type": { "_instruction": "Add the type of this file repository.", "_linkedTypes": [ - "/controlledTerms/FileRepositoryType" + "FileRepositoryType" ] } } diff --git a/schemas/data/fileRepositoryStructure.schema.tpl.json b/schemas/data/fileRepositoryStructure.schema.tpl.json index bdaebfac..58bfe94e 100644 --- a/schemas/data/fileRepositoryStructure.schema.tpl.json +++ b/schemas/data/fileRepositoryStructure.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/FileRepositoryStructure", + "_type": "FileRepositoryStructure", "required": [ "filePathPattern" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all file path patterns that define this file repository structure.", "_embeddedTypes": [ - "/core/FilePathPattern" + "FilePathPattern" ] }, "lookupLabel": { diff --git a/schemas/data/hash.schema.tpl.json b/schemas/data/hash.schema.tpl.json index ff270a45..cdfdfcee 100644 --- a/schemas/data/hash.schema.tpl.json +++ b/schemas/data/hash.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Hash", + "_type": "Hash", "required": [ "algorithm", "digest" diff --git a/schemas/data/license.schema.tpl.json b/schemas/data/license.schema.tpl.json index 637574c8..31be13c1 100644 --- a/schemas/data/license.schema.tpl.json +++ b/schemas/data/license.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/License", + "_type": "License", "required": [ "fullName", "legalCode", diff --git a/schemas/data/measurement.schema.tpl.json b/schemas/data/measurement.schema.tpl.json index f8c7bd3e..293dd4a9 100644 --- a/schemas/data/measurement.schema.tpl.json +++ b/schemas/data/measurement.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Measurement", + "_type": "Measurement", "required": [ "measuredQuantity", "value" @@ -12,7 +12,7 @@ "measuredQuantity": { "_instruction": "Add the quantity that was measured during this measurement.", "_linkedTypes": [ - "/controlledTerms/MeasuredQuantity" + "MeasuredQuantity" ] }, "measuredWith": { @@ -34,8 +34,8 @@ "uniqueItems": true, "_instruction": "Enter all values that were measured at the same time and are of the same measured quantity.", "_embeddedTypes": [ - "/core/QuantitativeValue", - "/core/QuantitativeValueRange" + "QuantitativeValue", + "QuantitativeValueRange" ] } } diff --git a/schemas/data/serviceLink.schema.tpl.json b/schemas/data/serviceLink.schema.tpl.json index 2f7cb3ee..10fbcf0a 100644 --- a/schemas/data/serviceLink.schema.tpl.json +++ b/schemas/data/serviceLink.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ServiceLink", + "_type": "ServiceLink", "required": [ "dataLocation", "openDataIn", @@ -9,12 +9,12 @@ "dataLocation": { "_instruction": "Add the location of the data that are linked to this specific service (e.g., stored as file (bundles) or registered as other entities such as atlas annotations).", "_linkedTypes": [ - "/core/File", - "/core/FileArchive", - "/core/FileBundle", - "/core/ModelVersion", - "/publications/LivePaperResourceItem", - "/sands/ParcellationEntityVersion" + "File", + "FileArchive", + "FileBundle", + "ModelVersion", + "LivePaperResourceItem", + "ParcellationEntityVersion" ] }, "displayLabel": { @@ -31,13 +31,13 @@ "previewImage": { "_instruction": "Add an image file to this service link that acts as a preview of its content or could function as an icon.", "_linkedTypes": [ - "/core/File" + "File" ] }, "service": { "_instruction": "Add the service in which the specified data can be opened.", "_linkedTypes": [ - "/controlledTerms/Service" + "Service" ] } } diff --git a/schemas/digitalIdentifier/DOI.schema.tpl.json b/schemas/digitalIdentifier/DOI.schema.tpl.json index b727c72c..e41424a3 100644 --- a/schemas/digitalIdentifier/DOI.schema.tpl.json +++ b/schemas/digitalIdentifier/DOI.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/DOI", + "_type": "DOI", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/GRIDID.schema.tpl.json b/schemas/digitalIdentifier/GRIDID.schema.tpl.json index a3a5f861..daf3b580 100644 --- a/schemas/digitalIdentifier/GRIDID.schema.tpl.json +++ b/schemas/digitalIdentifier/GRIDID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/GRIDID", + "_type": "GRIDID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/HANDLE.schema.tpl.json b/schemas/digitalIdentifier/HANDLE.schema.tpl.json index 703c55be..ec27d366 100644 --- a/schemas/digitalIdentifier/HANDLE.schema.tpl.json +++ b/schemas/digitalIdentifier/HANDLE.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/HANDLE", + "_type": "HANDLE", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISBN.schema.tpl.json b/schemas/digitalIdentifier/ISBN.schema.tpl.json index e470811b..b7f42a6f 100644 --- a/schemas/digitalIdentifier/ISBN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISBN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ISBN", + "_type": "ISBN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISSN.schema.tpl.json b/schemas/digitalIdentifier/ISSN.schema.tpl.json index 4adff968..43253a7a 100644 --- a/schemas/digitalIdentifier/ISSN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISSN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ISSN", + "_type": "ISSN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json index 66489c64..29ca9e22 100644 --- a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json +++ b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/IdentifiersDotOrgID", + "_type": "IdentifiersDotOrgID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/ORCID.schema.tpl.json b/schemas/digitalIdentifier/ORCID.schema.tpl.json index b88dda93..fb5cf58f 100644 --- a/schemas/digitalIdentifier/ORCID.schema.tpl.json +++ b/schemas/digitalIdentifier/ORCID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ORCID", + "_type": "ORCID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RORID.schema.tpl.json b/schemas/digitalIdentifier/RORID.schema.tpl.json index 5b8c3a37..4a5a6fd7 100644 --- a/schemas/digitalIdentifier/RORID.schema.tpl.json +++ b/schemas/digitalIdentifier/RORID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/RORID", + "_type": "RORID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RRID.schema.tpl.json b/schemas/digitalIdentifier/RRID.schema.tpl.json index 714d4ddf..806feca2 100644 --- a/schemas/digitalIdentifier/RRID.schema.tpl.json +++ b/schemas/digitalIdentifier/RRID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/RRID", + "_type": "RRID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/SWHID.schema.tpl.json b/schemas/digitalIdentifier/SWHID.schema.tpl.json index de8b59b0..c0c78c23 100644 --- a/schemas/digitalIdentifier/SWHID.schema.tpl.json +++ b/schemas/digitalIdentifier/SWHID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/SWHID", + "_type": "SWHID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/genericIdentifier.tpl.json b/schemas/digitalIdentifier/genericIdentifier.tpl.json index c8719c90..739b110c 100644 --- a/schemas/digitalIdentifier/genericIdentifier.tpl.json +++ b/schemas/digitalIdentifier/genericIdentifier.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/GenericIdentifier", + "_type": "GenericIdentifier", "required": [ "emitter", "identifier" @@ -7,7 +7,9 @@ "properties": { "emitter": { "_instruction": "Add the organization that governs and/or emits the identifier.", - "_linkedTypes": ["/core/Organization"] + "_linkedTypes": [ + "Organization" + ] }, "identifier": { "type": "string", diff --git a/schemas/digitalIdentifier/stockNumber.schema.tpl.json b/schemas/digitalIdentifier/stockNumber.schema.tpl.json index 07b3de35..07299a85 100644 --- a/schemas/digitalIdentifier/stockNumber.schema.tpl.json +++ b/schemas/digitalIdentifier/stockNumber.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/StockNumber", + "_type": "StockNumber", "required": [ "identifier", "vendor" @@ -12,7 +12,7 @@ "vendor": { "_instruction": "Add the vendor that has the item with this identifier in stock.", "_linkedTypes": [ - "/core/Organization" + "Organization" ] } } diff --git a/schemas/miscellaneous/comment.schema.tpl.json b/schemas/miscellaneous/comment.schema.tpl.json index d8af7273..cb0492b1 100644 --- a/schemas/miscellaneous/comment.schema.tpl.json +++ b/schemas/miscellaneous/comment.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Comment", + "_type": "Comment", "required": [ "about", "comment", @@ -20,7 +20,7 @@ "commenter": { "_instruction": "Add the person that created this comment.", "_linkedTypes": [ - "/core/Person" + "Person" ] }, "timestamp": { diff --git a/schemas/miscellaneous/funding.schema.tpl.json b/schemas/miscellaneous/funding.schema.tpl.json index f202ff59..529f867d 100644 --- a/schemas/miscellaneous/funding.schema.tpl.json +++ b/schemas/miscellaneous/funding.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Funding", + "_type": "Funding", "required": [ "funder" ], diff --git a/schemas/miscellaneous/quantitativeValue.schema.tpl.json b/schemas/miscellaneous/quantitativeValue.schema.tpl.json index 7c2a1ba0..1a3ca463 100644 --- a/schemas/miscellaneous/quantitativeValue.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValue.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/QuantitativeValue", + "_type": "QuantitativeValue", "required": [ "value" ], @@ -7,7 +7,7 @@ "typeOfUncertainty": { "_instruction": "Add the type of uncertainty used to determine the uncertainty for this quantitative value.", "_linkedTypes": [ - "/controlledTerms/TypeOfUncertainty" + "TypeOfUncertainty" ] }, "uncertainty": { @@ -22,7 +22,7 @@ "unit": { "_instruction": "Add the unit of measurement of this quantitative value and its uncertainty.", "_linkedTypes": [ - "/controlledTerms/UnitOfMeasurement" + "UnitOfMeasurement" ] }, "value": { diff --git a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json index db9a6509..dd1cc7d2 100644 --- a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/QuantitativeValueArray", + "_type": "QuantitativeValueArray", "required": [ "values" ], @@ -23,15 +23,15 @@ "typeOfUncertainty": { "_instruction": "Add the type of estimation for the uncertainties.", "_linkedTypes": [ - "/controlledTerms/TypeOfUncertainty" + "TypeOfUncertainty" ] - }, + }, "unit": { "_instruction": "Add the unit of measurement of the values and their uncertainties.", "_linkedTypes": [ - "/controlledTerms/UnitOfMeasurement" + "UnitOfMeasurement" ] - }, + }, "values": { "type": "array", "minItems": 2, diff --git a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json index fe29e8a2..bf6a6b73 100644 --- a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/QuantitativeValueRange", + "_type": "QuantitativeValueRange", "required": [ "maxValue", "minValue" @@ -12,7 +12,7 @@ "maxValueUnit": { "_instruction": "Add the unit of measurement for the maximum value.", "_linkedTypes": [ - "/controlledTerms/UnitOfMeasurement" + "UnitOfMeasurement" ] }, "minValue": { @@ -22,7 +22,7 @@ "minValueUnit": { "_instruction": "Add the unit of measurement for the minimum value.", "_linkedTypes": [ - "/controlledTerms/UnitOfMeasurement" + "UnitOfMeasurement" ] } } diff --git a/schemas/miscellaneous/researchProductGroup.schema.tpl.json b/schemas/miscellaneous/researchProductGroup.schema.tpl.json index 184e969d..3720e382 100644 --- a/schemas/miscellaneous/researchProductGroup.schema.tpl.json +++ b/schemas/miscellaneous/researchProductGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ResearchProductGroup", + "_type": "ResearchProductGroup", "required": [ "context", "hasPart" diff --git a/schemas/miscellaneous/webResource.schema.tpl.json b/schemas/miscellaneous/webResource.schema.tpl.json index 2c36f1e9..c0f9c264 100644 --- a/schemas/miscellaneous/webResource.schema.tpl.json +++ b/schemas/miscellaneous/webResource.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/WebResource", + "_type": "WebResource", "required": [ "IRI" ], @@ -11,7 +11,7 @@ "format": { "_instruction": "Add the expected content type of the document at this web resource.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "IRI": { diff --git a/schemas/products/dataset.schema.tpl.json b/schemas/products/dataset.schema.tpl.json index dd0384b2..601856eb 100644 --- a/schemas/products/dataset.schema.tpl.json +++ b/schemas/products/dataset.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Dataset", + "_type": "Dataset", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "author" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "/core/DOI", - "/core/IdentifiersDotOrgID" + "DOI", + "IdentifiersDotOrgID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this dataset.", "_linkedTypes": [ - "/core/DatasetVersion" + "DatasetVersion" ] } } diff --git a/schemas/products/datasetVersion.schema.tpl.json b/schemas/products/datasetVersion.schema.tpl.json index 603ff5b9..8e2f24a2 100644 --- a/schemas/products/datasetVersion.schema.tpl.json +++ b/schemas/products/datasetVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/DatasetVersion", + "_type": "DatasetVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "dataType", @@ -25,7 +25,7 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed in this dataset version.", "_linkedTypes": [ - "/core/BehavioralProtocol" + "BehavioralProtocol" ] }, "dataType": { @@ -34,20 +34,20 @@ "uniqueItems": true, "_instruction": "Add all semantic data types (raw, derived and/or simulated) provided in this dataset version.", "_linkedTypes": [ - "/controlledTerms/SemanticDataType" + "SemanticDataType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "/core/DOI", - "/core/IdentifiersDotOrgID" + "DOI", + "IdentifiersDotOrgID" ] }, "ethicsAssessment": { "_instruction": "Add the result of the ethics assessment of this dataset version.", "_linkedTypes": [ - "/controlledTerms/EthicsAssessment" + "EthicsAssessment" ] }, "experimentalApproach": { @@ -56,7 +56,7 @@ "uniqueItems": true, "_instruction": "Add all experimental approaches which this dataset version has deployed.", "_linkedTypes": [ - "/controlledTerms/ExperimentalApproach" + "ExperimentalApproach" ] }, "inputData": { @@ -65,14 +65,14 @@ "uniqueItems": true, "_instruction": "Add the data that was used as input for this dataset version.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/FileBundle", - "/core/WebResource", - "/sands/BrainAtlas", - "/sands/BrainAtlasVersion", - "/sands/CommonCoordinateSpace", - "/sands/CommonCoordinateSpaceVersion" + "DOI", + "File", + "FileBundle", + "WebResource", + "BrainAtlas", + "BrainAtlasVersion", + "CommonCoordinateSpace", + "CommonCoordinateSpaceVersion" ] }, "isAlternativeVersionOf": { @@ -81,20 +81,20 @@ "uniqueItems": true, "_instruction": "Add all dataset versions that can be used alternatively to this dataset version.", "_linkedTypes": [ - "/core/DatasetVersion" + "DatasetVersion" ] }, "isNewVersionOf": { "_instruction": "Add the dataset version preceding this dataset version.", "_linkedTypes": [ - "/core/DatasetVersion" + "DatasetVersion" ] }, "license": { "_instruction": "Add the license or an online available data usage agreement for this dataset version.", "_linkedTypes": [ - "/core/License", - "/core/WebResource" + "License", + "WebResource" ] }, "preparationDesign": { @@ -103,7 +103,7 @@ "uniqueItems": true, "_instruction": "Add all preparation types used in this dataset version.", "_linkedTypes": [ - "/controlledTerms/PreparationType" + "PreparationType" ] }, "protocol": { @@ -112,7 +112,7 @@ "uniqueItems": true, "_instruction": "Add all protocols that were performed in this dataset version (e.g., for data acquisition or processing).", "_linkedTypes": [ - "/core/Protocol" + "Protocol" ] }, "studiedSpecimen": { @@ -121,10 +121,10 @@ "uniqueItems": true, "_instruction": "Add all specimens or sets of specimen that were studied in this dataset.", "_linkedTypes": [ - "/core/Subject", - "/core/SubjectGroup", - "/core/TissueSample", - "/core/TissueSampleCollection" + "Subject", + "SubjectGroup", + "TissueSample", + "TissueSampleCollection" ] }, "studyTarget": { diff --git a/schemas/products/device.schema.tpl.json b/schemas/products/device.schema.tpl.json index ce3c649f..2e31381e 100644 --- a/schemas/products/device.schema.tpl.json +++ b/schemas/products/device.schema.tpl.json @@ -14,14 +14,14 @@ "deviceType": { "_instruction": "Add the type of this device.", "_linkedTypes": [ - "/controlledTerms/DeviceType" + "DeviceType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this device.", "_linkedTypes": [ - "/core/DOI", - "/core/RRID" + "DOI", + "RRID" ] }, "lookupLabel": { diff --git a/schemas/products/metaDataModel.schema.tpl.json b/schemas/products/metaDataModel.schema.tpl.json index 30386728..d7b5cfe2 100644 --- a/schemas/products/metaDataModel.schema.tpl.json +++ b/schemas/products/metaDataModel.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/MetaDataModel", + "_type": "MetaDataModel", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "/core/DOI", - "/core/SWHID" + "DOI", + "SWHID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this (meta)data model.", "_linkedTypes": [ - "/core/MetaDataModelVersion" + "MetaDataModelVersion" ] } } diff --git a/schemas/products/metaDataModelVersion.schema.tpl.json b/schemas/products/metaDataModelVersion.schema.tpl.json index aad8e2a9..dce40bf2 100644 --- a/schemas/products/metaDataModelVersion.schema.tpl.json +++ b/schemas/products/metaDataModelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/MetaDataModelVersion", + "_type": "MetaDataModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "license", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "/core/DOI", - "/core/SWHID" + "DOI", + "SWHID" ] }, "isAlternativeVersionOf": { @@ -28,19 +28,19 @@ "uniqueItems": true, "_instruction": "Add all (meta)data model versions that can be used alternatively to this (meta)data model version.", "_linkedTypes": [ - "/core/MetaDataModelVersion" + "MetaDataModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the (meta)data version preceding this (meta)data model version.", "_linkedTypes": [ - "/core/MetaDataModelVersion" + "MetaDataModelVersion" ] }, "license": { "_instruction": "Add the license of this (meta)data model version.", "_linkedTypes": [ - "/core/License" + "License" ] }, "serializationFormat": { @@ -49,7 +49,7 @@ "uniqueItems": true, "_instruction": "Add all content types in which (meta)data compliant with this (meta)data model version can be stored in.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "specificationFormat": { @@ -58,13 +58,13 @@ "uniqueItems": true, "_instruction": "Add all content types in which the schemas of this (meta)data model version are stored in.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "type": { "_instruction": "Add the type of this (meta)data model version.", "_linkedTypes": [ - "/controlledTerms/MetaDataModelType" + "MetaDataModelType" ] } } diff --git a/schemas/products/model.schema.tpl.json b/schemas/products/model.schema.tpl.json index 64825918..86e3a8ed 100644 --- a/schemas/products/model.schema.tpl.json +++ b/schemas/products/model.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Model", + "_type": "Model", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "abstractionLevel", @@ -11,7 +11,7 @@ "abstractionLevel": { "_instruction": "Add the abstraction level of this computational model.", "_linkedTypes": [ - "/controlledTerms/ModelAbstractionLevel" + "ModelAbstractionLevel" ] }, "developer": { @@ -26,8 +26,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "/core/DOI", - "/core/SWHID" + "DOI", + "SWHID" ] }, "hasVersion": { @@ -36,13 +36,13 @@ "uniqueItems": true, "_instruction": "Add all versions of this computational model.", "_linkedTypes": [ - "/core/ModelVersion" + "ModelVersion" ] }, "scope": { "_instruction": "Add the scope of this computational model.", "_linkedTypes": [ - "/controlledTerms/ModelScope" + "ModelScope" ] }, "studyTarget": { diff --git a/schemas/products/modelVersion.schema.tpl.json b/schemas/products/modelVersion.schema.tpl.json index 69657702..1278977a 100644 --- a/schemas/products/modelVersion.schema.tpl.json +++ b/schemas/products/modelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ModelVersion", + "_type": "ModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "format", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "/core/DOI", - "/core/SWHID" + "DOI", + "SWHID" ] }, "format": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add the content type of this computational model version, or the content types of the files composing the model version.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "inputData": { @@ -37,10 +37,10 @@ "uniqueItems": true, "_instruction": "Add the data that was used as input for this computational model version.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/FileBundle", - "/core/WebResource" + "DOI", + "File", + "FileBundle", + "WebResource" ] }, "isAlternativeVersionOf": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all computational model versions that can be used alternatively to this computational model version.", "_linkedTypes": [ - "/core/ModelVersion" + "ModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the computational model version preceding this computational model version.", "_linkedTypes": [ - "/core/ModelVersion" + "ModelVersion" ] }, "license": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this computational model version.", "_linkedTypes": [ - "/core/License" + "License" ] }, "outputData": { @@ -73,10 +73,10 @@ "uniqueItems": true, "_instruction": "Add the data that was generated as output by this computational model version.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/FileBundle", - "/core/WebResource" + "DOI", + "File", + "FileBundle", + "WebResource" ] } } diff --git a/schemas/products/project.schema.tpl.json b/schemas/products/project.schema.tpl.json index d333a238..55e1ffba 100644 --- a/schemas/products/project.schema.tpl.json +++ b/schemas/products/project.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Project", + "_type": "Project", "required": [ "description", "fullName", diff --git a/schemas/products/researchProductVersion.schema.tpl.json b/schemas/products/researchProductVersion.schema.tpl.json index 1daa0d36..b8f34acc 100644 --- a/schemas/products/researchProductVersion.schema.tpl.json +++ b/schemas/products/researchProductVersion.schema.tpl.json @@ -14,13 +14,13 @@ "accessibility": { "_instruction": "Add the accessibility of the data for this research product version.", "_linkedTypes": [ - "/controlledTerms/ProductAccessibility" + "ProductAccessibility" ] }, "copyright": { "_instruction": "Enter the copyright information of this research product version.", "_embeddedTypes": [ - "/core/Copyright" + "Copyright" ] }, "custodian": { @@ -39,10 +39,10 @@ "fullDocumentation": { "_instruction": "Add the publication or file that acts as the full documentation of this research product version.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/ISBN", - "/core/WebResource" + "DOI", + "File", + "ISBN", + "WebResource" ] }, "fullName": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all funding information of this research product version.", "_linkedTypes": [ - "/core/Funding" + "Funding" ] }, "homepage": { @@ -84,7 +84,7 @@ "uniqueItems": true, "_instruction": "Add any other contributions to this research product version that are not covered under 'author'/'developer' or 'custodian'.", "_embeddedTypes": [ - "/core/Contribution" + "Contribution" ] }, "relatedPublication": { @@ -106,7 +106,7 @@ "repository": { "_instruction": "Add the file repository of this research product version.", "_linkedTypes": [ - "/core/FileRepository" + "FileRepository" ] }, "shortName": { diff --git a/schemas/products/setup.schema.tpl.json b/schemas/products/setup.schema.tpl.json index 793b0b80..4527b5f6 100644 --- a/schemas/products/setup.schema.tpl.json +++ b/schemas/products/setup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Setup", + "_type": "Setup", "_categories": [ "setupComponent" ], @@ -45,7 +45,7 @@ "uniqueItems": true, "_instruction": "Add all types that describe this setup.", "_linkedTypes": [ - "/controlledTerms/SetupType" + "SetupType" ] } } diff --git a/schemas/products/software.schema.tpl.json b/schemas/products/software.schema.tpl.json index 89581f59..7577d9ea 100644 --- a/schemas/products/software.schema.tpl.json +++ b/schemas/products/software.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Software", + "_type": "Software", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,9 +17,9 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "/core/DOI", - "/core/RRID", - "/core/SWHID" + "DOI", + "RRID", + "SWHID" ] }, "hasVersion": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this software tool.", "_linkedTypes": [ - "/core/SoftwareVersion" + "SoftwareVersion" ] } } diff --git a/schemas/products/softwareVersion.schema.tpl.json b/schemas/products/softwareVersion.schema.tpl.json index baf21e24..3125e4db 100644 --- a/schemas/products/softwareVersion.schema.tpl.json +++ b/schemas/products/softwareVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/SoftwareVersion", + "_type": "SoftwareVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "_categories": [ "setupComponent" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all categories to which this software version belongs.", "_linkedTypes": [ - "/controlledTerms/SoftwareApplicationCategory" + "SoftwareApplicationCategory" ] }, "developer": { @@ -38,15 +38,15 @@ "uniqueItems": true, "_instruction": "Add all operating devices compatible with this software version.", "_linkedTypes": [ - "/controlledTerms/OperatingDevice" + "OperatingDevice" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "/core/DOI", - "/core/SWHID", - "/core/RRID" + "DOI", + "SWHID", + "RRID" ] }, "feature": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all distinguishing characteristics of this software version (e.g., performance, portability or functionality).", "_linkedTypes": [ - "/controlledTerms/SoftwareFeature" + "SoftwareFeature" ] }, "hasPart": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that supplement this software version.", "_linkedTypes": [ - "/core/SoftwareVersion" + "SoftwareVersion" ] }, "inputFormat": { @@ -73,7 +73,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this software version.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "isAlternativeVersionOf": { @@ -82,13 +82,13 @@ "uniqueItems": true, "_instruction": "Add all software versions that can be used alternatively to this software version.", "_linkedTypes": [ - "/core/SoftwareVersion" + "SoftwareVersion" ] }, "isNewVersionOf": { "_instruction": "Add the software version preceding this software version.", "_linkedTypes": [ - "/core/SoftwareVersion" + "SoftwareVersion" ] }, "language": { @@ -97,7 +97,7 @@ "uniqueItems": true, "_instruction": "Add all languages supported by this software version.", "_linkedTypes": [ - "/controlledTerms/Language" + "Language" ] }, "license": { @@ -106,7 +106,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this software version.", "_linkedTypes": [ - "/core/License" + "License" ] }, "operatingSystem": { @@ -115,7 +115,7 @@ "uniqueItems": true, "_instruction": "Add all operating systems supported by this software version.", "_linkedTypes": [ - "/controlledTerms/OperatingSystem" + "OperatingSystem" ] }, "outputFormat": { @@ -124,7 +124,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this software version.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "programmingLanguage": { @@ -133,7 +133,7 @@ "uniqueItems": true, "_instruction": "Add all programming languages used to develop this software version.", "_linkedTypes": [ - "/controlledTerms/ProgrammingLanguage" + "ProgrammingLanguage" ] }, "requirement": { diff --git a/schemas/products/webService.schema.tpl.json b/schemas/products/webService.schema.tpl.json index 9375a65e..69b9095d 100644 --- a/schemas/products/webService.schema.tpl.json +++ b/schemas/products/webService.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/WebService", + "_type": "WebService", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this web service.", "_linkedTypes": [ - "/core/WebServiceVersion" + "WebServiceVersion" ] } } diff --git a/schemas/products/webServiceVersion.schema.tpl.json b/schemas/products/webServiceVersion.schema.tpl.json index 7421d9b5..1619947d 100644 --- a/schemas/products/webServiceVersion.schema.tpl.json +++ b/schemas/products/webServiceVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/WebServiceVersion", + "_type": "WebServiceVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "properties": { "developer": { @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that are components of this web service version.", "_linkedTypes": [ - "/core/SoftwareVersion" + "SoftwareVersion" ] }, "inputFormat": { @@ -26,7 +26,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this web service version.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "isAlternativeVersionOf": { @@ -35,13 +35,13 @@ "uniqueItems": true, "_instruction": "Add all web service versions that can be used alternatively to this web service version.", "_linkedTypes": [ - "/core/WebServiceVersion" + "WebServiceVersion" ] }, "isNewVersionOf": { "_instruction": "Add the web service version preceding this web service version.", "_linkedTypes": [ - "/core/WebServiceVersion" + "WebServiceVersion" ] }, "outputFormat": { @@ -50,7 +50,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this web service version.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] } } diff --git a/schemas/research/activity.schema.tpl.json b/schemas/research/activity.schema.tpl.json index c2b8a45b..6e4cbdb5 100644 --- a/schemas/research/activity.schema.tpl.json +++ b/schemas/research/activity.schema.tpl.json @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add any user-defined parameters grouped in context-specific sets that are not covered in the standardized properties of this activity.", "_embeddedTypes": [ - "/core/CustomPropertySet" + "CustomPropertySet" ] }, "description": { @@ -31,8 +31,8 @@ "uniqueItems": true, "_instruction": "Add all inputs used by this activity.", "_linkedTypes": [ - "/core/File", - "/core/FileBundle" + "File", + "FileBundle" ] }, "lookupLabel": { @@ -45,8 +45,8 @@ "uniqueItems": true, "_instruction": "Add all outputs generated by this activity.", "_linkedTypes": [ - "/core/File", - "/core/FileBundle" + "File", + "FileBundle" ] }, "performedBy": { diff --git a/schemas/research/behavioralProtocol.schema.tpl.json b/schemas/research/behavioralProtocol.schema.tpl.json index 5216a673..7378fd8d 100644 --- a/schemas/research/behavioralProtocol.schema.tpl.json +++ b/schemas/research/behavioralProtocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/BehavioralProtocol", + "_type": "BehavioralProtocol", "_categories": [ "fileOrigin" ], @@ -14,9 +14,9 @@ "uniqueItems": true, "_instruction": "Add all sources in which this behavioral protocol is described in detail.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/WebResource" + "DOI", + "File", + "WebResource" ] }, "description": { @@ -37,8 +37,8 @@ "uniqueItems": true, "_instruction": "Add all stimulation approaches and/or techniques used within this behavioral protocol.", "_linkedTypes": [ - "/controlledTerms/StimulationApproach", - "/controlledTerms/StimulationTechnique" + "StimulationApproach", + "StimulationTechnique" ] }, "stimulusType": { diff --git a/schemas/research/configuration.schema.tpl.json b/schemas/research/configuration.schema.tpl.json index f41c249c..a300d529 100644 --- a/schemas/research/configuration.schema.tpl.json +++ b/schemas/research/configuration.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Configuration", + "_type": "Configuration", "required": [ "configuration", "format" @@ -12,7 +12,7 @@ "format": { "_instruction": "Add the content type of this configuration.", "_linkedTypes": [ - "/core/ContentType" + "ContentType" ] }, "lookupLabel": { diff --git a/schemas/research/customPropertySet.schema.tpl.json b/schemas/research/customPropertySet.schema.tpl.json index f61cff3c..dc9503ba 100644 --- a/schemas/research/customPropertySet.schema.tpl.json +++ b/schemas/research/customPropertySet.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/CustomPropertySet", + "_type": "CustomPropertySet", "required": [ "context", "dataLocation", @@ -13,9 +13,9 @@ "dataLocation": { "_instruction": "Add the location of the data that define the custom property set for the given context (e.g., stored as file or other entities such as property-value lists).", "_linkedTypes": [ - "/core/Configuration", - "/core/File", - "/core/PropertyValueList" + "Configuration", + "File", + "PropertyValueList" ] }, "relevantFor": { diff --git a/schemas/research/deviceUsage.schema.tpl.json b/schemas/research/deviceUsage.schema.tpl.json index 2a853559..216715ff 100644 --- a/schemas/research/deviceUsage.schema.tpl.json +++ b/schemas/research/deviceUsage.schema.tpl.json @@ -12,8 +12,8 @@ "uniqueItems": true, "_instruction": "Add all files or file bundles containing additional information about the usage of this device.", "_linkedTypes": [ - "/core/File", - "/core/FileBundle" + "File", + "FileBundle" ] }, "lookupLabel": { @@ -23,8 +23,8 @@ "usedSpecimen": { "_instruction": "Add the state of the tissue sample or subject that this device was used on.", "_linkedTypes": [ - "/core/SubjectState", - "/core/TissueSampleState" + "SubjectState", + "TissueSampleState" ] } } diff --git a/schemas/research/experimentalActivity.schema.tpl.json b/schemas/research/experimentalActivity.schema.tpl.json index 9ceadcdc..15541755 100644 --- a/schemas/research/experimentalActivity.schema.tpl.json +++ b/schemas/research/experimentalActivity.schema.tpl.json @@ -8,13 +8,13 @@ "isPartOf": { "_instruction": "Add the dataset version in which this activity was conducted.", "_linkedTypes": [ - "/core/DatasetVersion" + "DatasetVersion" ] }, "preparationDesign": { "_instruction": "Add the initial preparation type for this activity.", "_linkedTypes": [ - "/controlledTerms/PreparationType" + "PreparationType" ] }, "protocol": { @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add all protocols used during this activity.", "_linkedTypes": [ - "/core/Protocol" + "Protocol" ] } } diff --git a/schemas/research/numericalProperty.schema.tpl.json b/schemas/research/numericalProperty.schema.tpl.json index 0ae04cdd..d4a0e5f2 100644 --- a/schemas/research/numericalProperty.schema.tpl.json +++ b/schemas/research/numericalProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/NumericalProperty", + "_type": "NumericalProperty", "required": [ "name", "value" @@ -14,8 +14,8 @@ "minItems": 1, "_instruction": "Enter all quantitative values that are described by this numerical property.", "_embeddedTypes": [ - "/core/QuantitativeValue", - "/core/QuantitativeValueRange" + "QuantitativeValue", + "QuantitativeValueRange" ] } } diff --git a/schemas/research/propertyValueList.schema.tpl.json b/schemas/research/propertyValueList.schema.tpl.json index 76f3160c..6b26188e 100644 --- a/schemas/research/propertyValueList.schema.tpl.json +++ b/schemas/research/propertyValueList.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/PropertyValueList", + "_type": "PropertyValueList", "required": [ "propertyValuePair" ], @@ -14,8 +14,8 @@ "uniqueItems": true, "_instruction": "Enter all numerical and string property-value pairs that belong to this property-value list.", "_embeddedTypes": [ - "/core/NumericalProperty", - "/core/StringProperty" + "NumericalProperty", + "StringProperty" ] } } diff --git a/schemas/research/protocol.schema.tpl.json b/schemas/research/protocol.schema.tpl.json index 22615e76..4f164f61 100644 --- a/schemas/research/protocol.schema.tpl.json +++ b/schemas/research/protocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Protocol", + "_type": "Protocol", "required": [ "description", "name", @@ -9,9 +9,9 @@ "describedIn": { "_instruction": "Add a publication or file in which this protocol is (originally) described in detail.", "_linkedTypes": [ - "/core/DOI", - "/core/File", - "/core/WebResource" + "DOI", + "File", + "WebResource" ] }, "description": { diff --git a/schemas/research/protocolExecution.schema.tpl.json b/schemas/research/protocolExecution.schema.tpl.json index e02d08c3..834be67a 100644 --- a/schemas/research/protocolExecution.schema.tpl.json +++ b/schemas/research/protocolExecution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/ProtocolExecution", + "_type": "ProtocolExecution", "_extends": "research/experimentalActivity.schema.tpl.json", "properties": { "behavioralProtocol": { @@ -8,29 +8,29 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed during this protocol execution.", "_linkedTypes": [ - "/core/BehavioralProtocol" + "BehavioralProtocol" ] }, "input": { "_linkedTypes": [ - "/core/File", - "/core/FileBundle", - "/core/SubjectGroupState", - "/core/SubjectState", - "/core/TissueSampleCollectionState", - "/core/TissueSampleState", - "/sands/BrainAtlasVersion", - "/sands/CommonCoordinateSpaceVersion" + "File", + "FileBundle", + "SubjectGroupState", + "SubjectState", + "TissueSampleCollectionState", + "TissueSampleState", + "BrainAtlasVersion", + "CommonCoordinateSpaceVersion" ] }, "output": { "_linkedTypes": [ - "/core/File", - "/core/FileBundle", - "/core/SubjectGroupState", - "/core/SubjectState", - "/core/TissueSampleCollectionState", - "/core/TissueSampleState" + "File", + "FileBundle", + "SubjectGroupState", + "SubjectState", + "TissueSampleCollectionState", + "TissueSampleState" ] } } diff --git a/schemas/research/specimen.schema.tpl.json b/schemas/research/specimen.schema.tpl.json index 8d04e884..726cd700 100644 --- a/schemas/research/specimen.schema.tpl.json +++ b/schemas/research/specimen.schema.tpl.json @@ -9,7 +9,7 @@ "biologicalSex": { "_instruction": "Add the biological sex of this specimen.", "_linkedTypes": [ - "/controlledTerms/BiologicalSex" + "BiologicalSex" ] }, "internalIdentifier": { @@ -23,8 +23,8 @@ "species": { "_instruction": "Add the species or strain (a sub-type of a genetic variant of species) of this specimen.", "_linkedTypes": [ - "/controlledTerms/Species", - "/core/Strain" + "Species", + "Strain" ] } } diff --git a/schemas/research/specimenSet.schema.tpl.json b/schemas/research/specimenSet.schema.tpl.json index 42dfe63b..2f6ff4e8 100644 --- a/schemas/research/specimenSet.schema.tpl.json +++ b/schemas/research/specimenSet.schema.tpl.json @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add the biological sex of all specimen in this set.", "_linkedTypes": [ - "/controlledTerms/BiologicalSex" + "BiologicalSex" ] }, "internalIdentifier": { @@ -33,8 +33,8 @@ "uniqueItems": true, "_instruction": "Add the species and/or strain (a sub-type of a genetic variant of species) of all specimen in this set.", "_linkedTypes": [ - "/controlledTerms/Species", - "/core/Strain" + "Species", + "Strain" ] } } diff --git a/schemas/research/specimenState.schema.tpl.json b/schemas/research/specimenState.schema.tpl.json index 9d85c5f1..586b6c68 100644 --- a/schemas/research/specimenState.schema.tpl.json +++ b/schemas/research/specimenState.schema.tpl.json @@ -10,8 +10,8 @@ "age": { "_instruction": "Enter the age of the specimen (set) in this state.", "_embeddedTypes": [ - "/core/QuantitativeValue", - "/core/QuantitativeValueRange" + "QuantitativeValue", + "QuantitativeValueRange" ] }, "internalIdentifier": { @@ -28,22 +28,22 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that the specimen (set) in this state has and/or is a model for.", "_linkedTypes": [ - "/controlledTerms/Disease", - "/controlledTerms/DiseaseModel" + "Disease", + "DiseaseModel" ] }, "relativeTimeIndication": { "_instruction": "If there is a temporal relation between the states of a specimen (set), enter the relative time that has passed between this and the preceding specimen (set) state referenced under 'descendedFrom'.", "_embeddedTypes": [ - "/core/QuantitativeValue", - "/core/QuantitativeValueRange" + "QuantitativeValue", + "QuantitativeValueRange" ] }, "weight": { "_instruction": "Enter the weight of the specimen (set) in this state.", "_embeddedTypes": [ - "/core/QuantitativeValue", - "/core/QuantitativeValueRange" + "QuantitativeValue", + "QuantitativeValueRange" ] } } diff --git a/schemas/research/strain.schema.tpl.json b/schemas/research/strain.schema.tpl.json index 0cd571d9..607f308f 100644 --- a/schemas/research/strain.schema.tpl.json +++ b/schemas/research/strain.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Strain", + "_type": "Strain", "required": [ "geneticStrainType", "name", @@ -22,13 +22,13 @@ "uniqueItems": true, "_instruction": "Add the background strain that explains the majority of the genetic background and/or causes the majority of the prominent traits. If two strains contributed equally, state both.", "_linkedTypes": [ - "/core/Strain" + "Strain" ] }, "breedingType": { "_instruction": "Add the breeding type for this strain.", "_linkedTypes": [ - "/controlledTerms/BreedingType" + "BreedingType" ] }, "description": { @@ -38,7 +38,7 @@ "digitalIdentifier": { "_instruction": "Add the 'Research Resource Identifier' (RRID) of this strain.", "_linkedTypes": [ - "/core/RRID" + "RRID" ] }, "diseaseModel": { @@ -47,14 +47,14 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that this strain is a model for.", "_linkedTypes": [ - "/controlledTerms/Disease", - "/controlledTerms/DiseaseModel" + "Disease", + "DiseaseModel" ] }, "geneticStrainType": { "_instruction": "Add the genetic background type of this strain.", "_linkedTypes": [ - "/controlledTerms/GeneticStrainType" + "GeneticStrainType" ] }, "laboratoryCode": { @@ -85,13 +85,13 @@ "species": { "_instruction": "Add the species of this strain.", "_linkedTypes": [ - "/controlledTerms/Species" + "Species" ] }, "stockNumber": { "_instruction": "Add the stock number from the vendor the strain was supplied from/is in stock at.", "_embeddedTypes": [ - "/core/StockNumber" + "StockNumber" ] }, "synonym": { diff --git a/schemas/research/stringProperty.schema.tpl.json b/schemas/research/stringProperty.schema.tpl.json index 4269a0db..61dd860f 100644 --- a/schemas/research/stringProperty.schema.tpl.json +++ b/schemas/research/stringProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/StringProperty", + "_type": "StringProperty", "required": [ "name", "value" diff --git a/schemas/research/subject.schema.tpl.json b/schemas/research/subject.schema.tpl.json index ddcf1472..adfa7876 100644 --- a/schemas/research/subject.schema.tpl.json +++ b/schemas/research/subject.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/Subject", + "_type": "Subject", "_extends": "research/specimen.schema.tpl.json", "required": [ "studiedState" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all subject groups of which this subject is a member.", "_linkedTypes": [ - "/core/SubjectGroup" + "SubjectGroup" ] }, "studiedState": { @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject was studied.", "_linkedTypes": [ - "/core/SubjectState" + "SubjectState" ] } } diff --git a/schemas/research/subjectGroup.schema.tpl.json b/schemas/research/subjectGroup.schema.tpl.json index 53515620..caa9e2f4 100644 --- a/schemas/research/subjectGroup.schema.tpl.json +++ b/schemas/research/subjectGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/SubjectGroup", + "_type": "SubjectGroup", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "studiedState" @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject group was studied.", "_linkedTypes": [ - "/core/SubjectGroupState" + "SubjectGroupState" ] } } diff --git a/schemas/research/subjectGroupState.schema.tpl.json b/schemas/research/subjectGroupState.schema.tpl.json index f3305698..72bc6fd6 100644 --- a/schemas/research/subjectGroupState.schema.tpl.json +++ b/schemas/research/subjectGroupState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/SubjectGroupState", + "_type": "SubjectGroupState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "/controlledTerms/AgeCategory" + "AgeCategory" ] }, "attribute": { @@ -20,13 +20,13 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject group state.", "_linkedTypes": [ - "/controlledTerms/SubjectAttribute" + "SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject group state.", "_linkedTypes": [ - "/core/SubjectGroupState" + "SubjectGroupState" ] }, "handedness": { @@ -35,7 +35,7 @@ "uniqueItems": true, "_instruction": "Add all preferred types of handedness of the subject group in this state.", "_linkedTypes": [ - "/controlledTerms/Handedness" + "Handedness" ] } } diff --git a/schemas/research/subjectState.schema.tpl.json b/schemas/research/subjectState.schema.tpl.json index a2c2371e..f71f3b49 100644 --- a/schemas/research/subjectState.schema.tpl.json +++ b/schemas/research/subjectState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/SubjectState", + "_type": "SubjectState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -8,7 +8,7 @@ "ageCategory": { "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "/controlledTerms/AgeCategory" + "AgeCategory" ] }, "attribute": { @@ -17,19 +17,19 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject state.", "_linkedTypes": [ - "/controlledTerms/SubjectAttribute" + "SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject state.", "_linkedTypes": [ - "/core/SubjectState" + "SubjectState" ] }, "handedness": { "_instruction": "Add the preferred handedness of the subject in this state.", "_linkedTypes": [ - "/controlledTerms/Handedness" + "Handedness" ] } } diff --git a/schemas/research/tissueSample.schema.tpl.json b/schemas/research/tissueSample.schema.tpl.json index b47ae145..877809bd 100644 --- a/schemas/research/tissueSample.schema.tpl.json +++ b/schemas/research/tissueSample.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/TissueSample", + "_type": "TissueSample", "_extends": "research/specimen.schema.tpl.json", "required": [ "origin", @@ -22,7 +22,7 @@ "uniqueItems": true, "_instruction": "Add all tissue sample collections this tissue sample is part of.", "_linkedTypes": [ - "/core/TissueSampleCollection" + "TissueSampleCollection" ] }, "laterality": { @@ -32,15 +32,15 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample originates from.", "_linkedTypes": [ - "/controlledTerms/Laterality" + "Laterality" ] }, "origin": { "_instruction": "Add the biogical origin of this tissue sample.", "_linkedTypes": [ - "/controlledTerms/CellType", - "/controlledTerms/Organ", - "/controlledTerms/OrganismSubstance" + "CellType", + "Organ", + "OrganismSubstance" ] }, "studiedState": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample was studied.", "_linkedTypes": [ - "/core/TissueSampleState" + "TissueSampleState" ] }, "type": { "_instruction": "Add the type of this tissue sample.", "_linkedTypes": [ - "/controlledTerms/TissueSampleType" + "TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollection.schema.tpl.json b/schemas/research/tissueSampleCollection.schema.tpl.json index 1b8fa8dc..a1d62a04 100644 --- a/schemas/research/tissueSampleCollection.schema.tpl.json +++ b/schemas/research/tissueSampleCollection.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/TissueSampleCollection", + "_type": "TissueSampleCollection", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "origin", @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample collection originates from.", "_linkedTypes": [ - "/controlledTerms/Laterality" + "Laterality" ] }, "numberOfTissueSamples": { @@ -37,9 +37,9 @@ "uniqueItems": true, "_instruction": "Add the biogical origin of all tissue samples in this collection.", "_linkedTypes": [ - "/controlledTerms/CellType", - "/controlledTerms/Organ", - "/controlledTerms/OrganismSubstance" + "CellType", + "Organ", + "OrganismSubstance" ] }, "studiedState": { @@ -48,7 +48,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample collection was studied.", "_linkedTypes": [ - "/core/TissueSampleCollectionState" + "TissueSampleCollectionState" ] }, "type": { @@ -57,7 +57,7 @@ "uniqueItems": true, "_instruction": "Add the type of all tissue samples in this collection.", "_linkedTypes": [ - "/controlledTerms/TissueSampleType" + "TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollectionState.schema.tpl.json b/schemas/research/tissueSampleCollectionState.schema.tpl.json index fe4b5d03..ae705e52 100644 --- a/schemas/research/tissueSampleCollectionState.schema.tpl.json +++ b/schemas/research/tissueSampleCollectionState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/TissueSampleCollectionState", + "_type": "TissueSampleCollectionState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample collection state.", "_linkedTypes": [ - "/controlledTerms/TissueSampleAttribute" + "TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample collection state.", "_linkedTypes": [ - "/core/SubjectGroupState", - "/core/SubjectState", - "/core/TissueSampleCollectionState", - "/core/TissueSampleState" + "SubjectGroupState", + "SubjectState", + "TissueSampleCollectionState", + "TissueSampleState" ] } } diff --git a/schemas/research/tissueSampleState.schema.tpl.json b/schemas/research/tissueSampleState.schema.tpl.json index 6628b58b..4f8a9686 100644 --- a/schemas/research/tissueSampleState.schema.tpl.json +++ b/schemas/research/tissueSampleState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "/core/TissueSampleState", + "_type": "TissueSampleState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample state.", "_linkedTypes": [ - "/controlledTerms/TissueSampleAttribute" + "TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample state.", "_linkedTypes": [ - "/core/SubjectGroupState", - "/core/SubjectState", - "/core/TissueSampleCollectionState", - "/core/TissueSampleState" + "SubjectGroupState", + "SubjectState", + "TissueSampleCollectionState", + "TissueSampleState" ] } } From 46c74dae7cb323bd7fe2effb9ec3d0ec3699ad86 Mon Sep 17 00:00:00 2001 From: raphaelgazzotti Date: Fri, 20 Sep 2024 11:08:08 +0200 Subject: [PATCH 3/4] Keep the module prefix. --- .../actors/accountInformation.schema.tpl.json | 4 +- schemas/actors/affiliation.schema.tpl.json | 6 +- schemas/actors/consortium.schema.tpl.json | 4 +- .../actors/contactInformation.schema.tpl.json | 2 +- schemas/actors/contribution.schema.tpl.json | 4 +- schemas/actors/organization.schema.tpl.json | 12 ++-- schemas/actors/person.schema.tpl.json | 10 ++-- schemas/data/contentType.schema.tpl.json | 4 +- .../data/contentTypePattern.schema.tpl.json | 4 +- schemas/data/copyright.schema.tpl.json | 2 +- schemas/data/file.schema.tpl.json | 16 +++--- schemas/data/fileArchive.schema.tpl.json | 6 +- schemas/data/fileBundle.schema.tpl.json | 14 ++--- schemas/data/filePathPattern.schema.tpl.json | 4 +- schemas/data/fileRepository.schema.tpl.json | 16 +++--- .../fileRepositoryStructure.schema.tpl.json | 4 +- schemas/data/hash.schema.tpl.json | 2 +- schemas/data/license.schema.tpl.json | 2 +- schemas/data/measurement.schema.tpl.json | 8 +-- schemas/data/serviceLink.schema.tpl.json | 18 +++--- schemas/digitalIdentifier/DOI.schema.tpl.json | 2 +- .../digitalIdentifier/GRIDID.schema.tpl.json | 2 +- .../digitalIdentifier/HANDLE.schema.tpl.json | 2 +- .../digitalIdentifier/ISBN.schema.tpl.json | 2 +- .../digitalIdentifier/ISSN.schema.tpl.json | 2 +- .../IdentifiersDotOrgID.schema.tpl.json | 2 +- .../digitalIdentifier/ORCID.schema.tpl.json | 2 +- .../digitalIdentifier/RORID.schema.tpl.json | 2 +- .../digitalIdentifier/RRID.schema.tpl.json | 2 +- .../digitalIdentifier/SWHID.schema.tpl.json | 2 +- .../genericIdentifier.tpl.json | 6 +- .../stockNumber.schema.tpl.json | 4 +- schemas/miscellaneous/comment.schema.tpl.json | 4 +- schemas/miscellaneous/funding.schema.tpl.json | 2 +- .../quantitativeValue.schema.tpl.json | 6 +- .../quantitativeValueArray.schema.tpl.json | 10 ++-- .../quantitativeValueRange.schema.tpl.json | 6 +- .../researchProductGroup.schema.tpl.json | 2 +- .../miscellaneous/webResource.schema.tpl.json | 4 +- schemas/products/dataset.schema.tpl.json | 8 +-- .../products/datasetVersion.schema.tpl.json | 56 +++++++++---------- schemas/products/device.schema.tpl.json | 6 +- .../products/metaDataModel.schema.tpl.json | 8 +-- .../metaDataModelVersion.schema.tpl.json | 18 +++--- schemas/products/model.schema.tpl.json | 12 ++-- schemas/products/modelVersion.schema.tpl.json | 30 +++++----- schemas/products/project.schema.tpl.json | 2 +- .../researchProductVersion.schema.tpl.json | 18 +++--- schemas/products/setup.schema.tpl.json | 4 +- schemas/products/software.schema.tpl.json | 10 ++-- .../products/softwareVersion.schema.tpl.json | 32 +++++------ schemas/products/webService.schema.tpl.json | 4 +- .../webServiceVersion.schema.tpl.json | 12 ++-- schemas/research/activity.schema.tpl.json | 10 ++-- .../behavioralProtocol.schema.tpl.json | 12 ++-- .../research/configuration.schema.tpl.json | 4 +- .../customPropertySet.schema.tpl.json | 8 +-- schemas/research/deviceUsage.schema.tpl.json | 8 +-- .../experimentalActivity.schema.tpl.json | 6 +- .../numericalProperty.schema.tpl.json | 6 +- .../propertyValueList.schema.tpl.json | 6 +- schemas/research/protocol.schema.tpl.json | 8 +-- .../protocolExecution.schema.tpl.json | 32 +++++------ schemas/research/specimen.schema.tpl.json | 6 +- schemas/research/specimenSet.schema.tpl.json | 6 +- .../research/specimenState.schema.tpl.json | 16 +++--- schemas/research/strain.schema.tpl.json | 18 +++--- .../research/stringProperty.schema.tpl.json | 2 +- schemas/research/subject.schema.tpl.json | 6 +- schemas/research/subjectGroup.schema.tpl.json | 4 +- .../subjectGroupState.schema.tpl.json | 10 ++-- schemas/research/subjectState.schema.tpl.json | 10 ++-- schemas/research/tissueSample.schema.tpl.json | 16 +++--- .../tissueSampleCollection.schema.tpl.json | 14 ++--- ...issueSampleCollectionState.schema.tpl.json | 12 ++-- .../tissueSampleState.schema.tpl.json | 12 ++-- 76 files changed, 328 insertions(+), 330 deletions(-) diff --git a/schemas/actors/accountInformation.schema.tpl.json b/schemas/actors/accountInformation.schema.tpl.json index 39d9b46b..497f9c5a 100644 --- a/schemas/actors/accountInformation.schema.tpl.json +++ b/schemas/actors/accountInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "AccountInformation", + "_type": "core:AccountInformation", "required": [ "service", "userName" @@ -8,7 +8,7 @@ "service": { "_instruction": "Add the web service of this account.", "_linkedTypes": [ - "WebService" + "core:WebService" ] }, "userName": { diff --git a/schemas/actors/affiliation.schema.tpl.json b/schemas/actors/affiliation.schema.tpl.json index b14d3cf4..ffb00ddc 100644 --- a/schemas/actors/affiliation.schema.tpl.json +++ b/schemas/actors/affiliation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Affiliation", + "_type": "core:Affiliation", "required": [ "memberOf" ], @@ -14,8 +14,8 @@ "memberOf": { "_instruction": "Add the organization or consortium another party was or still is a member of.", "_linkedTypes": [ - "Consortium", - "Organization" + "core:Consortium", + "core:Organization" ] }, "startDate": { diff --git a/schemas/actors/consortium.schema.tpl.json b/schemas/actors/consortium.schema.tpl.json index 7b3028f8..fb465480 100644 --- a/schemas/actors/consortium.schema.tpl.json +++ b/schemas/actors/consortium.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Consortium", + "_type": "core:Consortium", "_categories": [ "legalPerson" ], @@ -10,7 +10,7 @@ "contactInformation": { "_instruction": "Add the contact information of this consortium.", "_linkedTypes": [ - "ContactInformation" + "core:ContactInformation" ] }, "fullName": { diff --git a/schemas/actors/contactInformation.schema.tpl.json b/schemas/actors/contactInformation.schema.tpl.json index 1aa2a16d..d569468c 100644 --- a/schemas/actors/contactInformation.schema.tpl.json +++ b/schemas/actors/contactInformation.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ContactInformation", + "_type": "core:ContactInformation", "required": [ "email" ], diff --git a/schemas/actors/contribution.schema.tpl.json b/schemas/actors/contribution.schema.tpl.json index 42a7f9d5..90722fde 100644 --- a/schemas/actors/contribution.schema.tpl.json +++ b/schemas/actors/contribution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Contribution", + "_type": "core:Contribution", "required": [ "contributor", "type" @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add the party that performed the contribution.", "_linkedTypes": [ - "ContributionType" + "controlledTerms:ContributionType" ] } } diff --git a/schemas/actors/organization.schema.tpl.json b/schemas/actors/organization.schema.tpl.json index 249cf39d..583d5bbd 100644 --- a/schemas/actors/organization.schema.tpl.json +++ b/schemas/actors/organization.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Organization", + "_type": "core:Organization", "_categories": [ "legalPerson" ], @@ -13,7 +13,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if necessary, past affiliations of this organization.", "_embeddedTypes": [ - "Affiliation" + "core:Affiliation" ] }, "digitalIdentifier": { @@ -22,9 +22,9 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this organization.", "_linkedTypes": [ - "GRIDID", - "RORID", - "RRID" + "core:GRIDID", + "core:RORID", + "core:RRID" ] }, "fullName": { @@ -37,7 +37,7 @@ "uniqueItems": true, "_instruction": "Add all parent organizations of this organization.", "_linkedTypes": [ - "Organization" + "core:Organization" ] }, "homepage": { diff --git a/schemas/actors/person.schema.tpl.json b/schemas/actors/person.schema.tpl.json index 8134c431..bd503e0a 100644 --- a/schemas/actors/person.schema.tpl.json +++ b/schemas/actors/person.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Person", + "_type": "core:Person", "_categories": [ "agent", "legalPerson" @@ -14,7 +14,7 @@ "uniqueItems": true, "_instruction": "Enter all current and, if desired, past affiliations of this person.", "_embeddedTypes": [ - "Affiliation" + "core:Affiliation" ] }, "alternateName": { @@ -32,13 +32,13 @@ "uniqueItems": true, "_instruction": "Add the information about web service accounts held by this person.", "_linkedTypes": [ - "AccountInformation" + "core:AccountInformation" ] }, "contactInformation": { "_instruction": "Add the contact information of this person.", "_linkedTypes": [ - "ContactInformation" + "core:ContactInformation" ] }, "digitalIdentifier": { @@ -47,7 +47,7 @@ "uniqueItems": true, "_instruction": "Add all globally unique and persistent digital identifier of this person.", "_linkedTypes": [ - "ORCID" + "core:ORCID" ] }, "familyName": { diff --git a/schemas/data/contentType.schema.tpl.json b/schemas/data/contentType.schema.tpl.json index 5327a3d3..57a33f3f 100644 --- a/schemas/data/contentType.schema.tpl.json +++ b/schemas/data/contentType.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ContentType", + "_type": "core:ContentType", "required": [ "name" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all data types that may be represented via this content type.", "_linkedTypes": [ - "DataType" + "controlledTerms:DataType" ] }, "description": { diff --git a/schemas/data/contentTypePattern.schema.tpl.json b/schemas/data/contentTypePattern.schema.tpl.json index d0d5ce26..e1ab3d56 100644 --- a/schemas/data/contentTypePattern.schema.tpl.json +++ b/schemas/data/contentTypePattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ContentTypePattern", + "_type": "core:ContentTypePattern", "required": [ "contentType", "regex" @@ -8,7 +8,7 @@ "contentType": { "_instruction": "Add the content type that can be defined by the regular expression of this content type pattern (e.g., for file extensions).", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "lookupLabel": { diff --git a/schemas/data/copyright.schema.tpl.json b/schemas/data/copyright.schema.tpl.json index 130a143b..63e50601 100644 --- a/schemas/data/copyright.schema.tpl.json +++ b/schemas/data/copyright.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Copyright", + "_type": "core:Copyright", "required": [ "holder", "year" diff --git a/schemas/data/file.schema.tpl.json b/schemas/data/file.schema.tpl.json index 6000f048..64320154 100644 --- a/schemas/data/file.schema.tpl.json +++ b/schemas/data/file.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "File", + "_type": "core:File", "_categories": [ "fileOrigin" ], @@ -18,19 +18,19 @@ "uniqueItems": true, "_instruction": "Add all data types that are specifically represented in this file instance.", "_linkedTypes": [ - "DataType" + "controlledTerms:DataType" ] }, "fileRepository": { "_instruction": "Add the overarching repository to which this file instance belongs.", "_linkedTypes": [ - "FileRepository" + "core:FileRepository" ] }, "format": { "_instruction": "Add the content type of this file instance.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "hash": { @@ -39,7 +39,7 @@ "uniqueItems": true, "_instruction": "Add all hashes that were generated for this file instance.", "_embeddedTypes": [ - "Hash" + "core:Hash" ] }, "IRI": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all file bundles in which this file instance is grouped into.", "_linkedTypes": [ - "FileBundle" + "core:FileBundle" ] }, "name": { @@ -65,13 +65,13 @@ "specialUsageRole": { "_instruction": "Add the special usage role of this file instance.", "_linkedTypes": [ - "FileUsageRole" + "controlledTerms:FileUsageRole" ] }, "storageSize": { "_instruction": "Enter the storage size of this file instance.", "_embeddedTypes": [ - "QuantitativeValue" + "core:QuantitativeValue" ] } } diff --git a/schemas/data/fileArchive.schema.tpl.json b/schemas/data/fileArchive.schema.tpl.json index 462da64e..81c3e0e3 100644 --- a/schemas/data/fileArchive.schema.tpl.json +++ b/schemas/data/fileArchive.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "FileArchive", + "_type": "core:FileArchive", "required": [ "format", "IRI" @@ -8,7 +8,7 @@ "format": { "_instruction": "Add the content type of this file archive.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "IRI": { @@ -24,7 +24,7 @@ "uniqueItems": true, "_instruction": "Add the data that were ingested and modified to create this file archive.", "_linkedTypes": [ - "File" + "core:File" ] } } diff --git a/schemas/data/fileBundle.schema.tpl.json b/schemas/data/fileBundle.schema.tpl.json index 00413367..858b4cc5 100644 --- a/schemas/data/fileBundle.schema.tpl.json +++ b/schemas/data/fileBundle.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "FileBundle", + "_type": "core:FileBundle", "_categories": [ "fileOrigin" ], @@ -15,7 +15,7 @@ "format": { "_instruction": "If the files within this bundle are organised and formatted according to a formal data structure, add the content type of this file bundle. Leave blank if no formal data structure has been applied to the files within this bundle.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "groupedBy": { @@ -35,20 +35,20 @@ "uniqueItems": true, "_instruction": "Add all grouping types that were used to define this file bundle. Note that the grouping types define the possible schema type of the instances stated under 'groupedBy'.", "_linkedTypes": [ - "FileBundleGrouping" + "controlledTerms:FileBundleGrouping" ] }, "hash": { "_instruction": "Add the hash that was generated for this file bundle.", "_embeddedTypes": [ - "Hash" + "core:Hash" ] }, "isPartOf": { "_instruction": "Add the file bundle or file repository this file bundle is part of.", "_linkedTypes": [ - "FileBundle", - "FileRepository" + "core:FileBundle", + "core:FileRepository" ] }, "name": { @@ -58,7 +58,7 @@ "storageSize": { "_instruction": "Enter the storage size of this file bundle.", "_embeddedTypes": [ - "QuantitativeValue" + "core:QuantitativeValue" ] } } diff --git a/schemas/data/filePathPattern.schema.tpl.json b/schemas/data/filePathPattern.schema.tpl.json index 12a4c10a..ead1f703 100644 --- a/schemas/data/filePathPattern.schema.tpl.json +++ b/schemas/data/filePathPattern.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "FilePathPattern", + "_type": "core:FilePathPattern", "required": [ "groupingType", "regex" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all grouping types that are defined by this file path pattern.", "_linkedTypes": [ - "FileBundleGrouping" + "controlledTerms:FileBundleGrouping" ] }, "regex": { diff --git a/schemas/data/fileRepository.schema.tpl.json b/schemas/data/fileRepository.schema.tpl.json index 5110e0fc..1dd44bd8 100644 --- a/schemas/data/fileRepository.schema.tpl.json +++ b/schemas/data/fileRepository.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "FileRepository", + "_type": "core:FileRepository", "required": [ "hostedBy", "IRI", @@ -9,19 +9,19 @@ "format": { "_instruction": "If the files and file bundles within this repository are organised and formatted according to a formal data structure, add the content type of this formal data structure. Leave blank if no formal data structure has been applied.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "hash": { "_instruction": "Add the hash that was generated for this file repository.", "_embeddedTypes": [ - "Hash" + "core:Hash" ] }, "hostedBy": { "_instruction": "Add the host organization of this file repository.", "_linkedTypes": [ - "Organization" + "core:Organization" ] }, "IRI": { @@ -41,25 +41,25 @@ "uniqueItems": true, "_instruction": "Add all content type patterns that identify matching content types for files within this file repository.", "_linkedTypes": [ - "ContentTypePattern" + "core:ContentTypePattern" ] }, "storageSize": { "_instruction": "Enter the storage size of this file repository.", "_embeddedTypes": [ - "QuantitativeValue" + "core:QuantitativeValue" ] }, "structurePattern": { "_instruction": "Add the file repository structure that identifies the file path patterns used in this file repository.", "_linkedTypes": [ - "FileRepositoryStructure" + "core:FileRepositoryStructure" ] }, "type": { "_instruction": "Add the type of this file repository.", "_linkedTypes": [ - "FileRepositoryType" + "controlledTerms:FileRepositoryType" ] } } diff --git a/schemas/data/fileRepositoryStructure.schema.tpl.json b/schemas/data/fileRepositoryStructure.schema.tpl.json index 58bfe94e..fa6cb1a2 100644 --- a/schemas/data/fileRepositoryStructure.schema.tpl.json +++ b/schemas/data/fileRepositoryStructure.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "FileRepositoryStructure", + "_type": "core:FileRepositoryStructure", "required": [ "filePathPattern" ], @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add all file path patterns that define this file repository structure.", "_embeddedTypes": [ - "FilePathPattern" + "core:FilePathPattern" ] }, "lookupLabel": { diff --git a/schemas/data/hash.schema.tpl.json b/schemas/data/hash.schema.tpl.json index cdfdfcee..45d2184c 100644 --- a/schemas/data/hash.schema.tpl.json +++ b/schemas/data/hash.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Hash", + "_type": "core:Hash", "required": [ "algorithm", "digest" diff --git a/schemas/data/license.schema.tpl.json b/schemas/data/license.schema.tpl.json index 31be13c1..d42565b1 100644 --- a/schemas/data/license.schema.tpl.json +++ b/schemas/data/license.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "License", + "_type": "core:License", "required": [ "fullName", "legalCode", diff --git a/schemas/data/measurement.schema.tpl.json b/schemas/data/measurement.schema.tpl.json index 293dd4a9..976daf81 100644 --- a/schemas/data/measurement.schema.tpl.json +++ b/schemas/data/measurement.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Measurement", + "_type": "core:Measurement", "required": [ "measuredQuantity", "value" @@ -12,7 +12,7 @@ "measuredQuantity": { "_instruction": "Add the quantity that was measured during this measurement.", "_linkedTypes": [ - "MeasuredQuantity" + "controlledTerms:MeasuredQuantity" ] }, "measuredWith": { @@ -34,8 +34,8 @@ "uniqueItems": true, "_instruction": "Enter all values that were measured at the same time and are of the same measured quantity.", "_embeddedTypes": [ - "QuantitativeValue", - "QuantitativeValueRange" + "core:QuantitativeValue", + "core:QuantitativeValueRange" ] } } diff --git a/schemas/data/serviceLink.schema.tpl.json b/schemas/data/serviceLink.schema.tpl.json index 10fbcf0a..fd9affa0 100644 --- a/schemas/data/serviceLink.schema.tpl.json +++ b/schemas/data/serviceLink.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ServiceLink", + "_type": "core:ServiceLink", "required": [ "dataLocation", "openDataIn", @@ -9,12 +9,12 @@ "dataLocation": { "_instruction": "Add the location of the data that are linked to this specific service (e.g., stored as file (bundles) or registered as other entities such as atlas annotations).", "_linkedTypes": [ - "File", - "FileArchive", - "FileBundle", - "ModelVersion", - "LivePaperResourceItem", - "ParcellationEntityVersion" + "core:File", + "core:FileArchive", + "core:FileBundle", + "core:ModelVersion", + "publications:LivePaperResourceItem", + "https://openminds.ebrains.eu/sands/ParcellationEntityVersion" ] }, "displayLabel": { @@ -31,13 +31,13 @@ "previewImage": { "_instruction": "Add an image file to this service link that acts as a preview of its content or could function as an icon.", "_linkedTypes": [ - "File" + "core:File" ] }, "service": { "_instruction": "Add the service in which the specified data can be opened.", "_linkedTypes": [ - "Service" + "controlledTerms:Service" ] } } diff --git a/schemas/digitalIdentifier/DOI.schema.tpl.json b/schemas/digitalIdentifier/DOI.schema.tpl.json index e41424a3..e79da05d 100644 --- a/schemas/digitalIdentifier/DOI.schema.tpl.json +++ b/schemas/digitalIdentifier/DOI.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "DOI", + "_type": "core:DOI", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/GRIDID.schema.tpl.json b/schemas/digitalIdentifier/GRIDID.schema.tpl.json index daf3b580..9e6f85a5 100644 --- a/schemas/digitalIdentifier/GRIDID.schema.tpl.json +++ b/schemas/digitalIdentifier/GRIDID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "GRIDID", + "_type": "core:GRIDID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/HANDLE.schema.tpl.json b/schemas/digitalIdentifier/HANDLE.schema.tpl.json index ec27d366..6449e075 100644 --- a/schemas/digitalIdentifier/HANDLE.schema.tpl.json +++ b/schemas/digitalIdentifier/HANDLE.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "HANDLE", + "_type": "core:HANDLE", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISBN.schema.tpl.json b/schemas/digitalIdentifier/ISBN.schema.tpl.json index b7f42a6f..4acbc3b5 100644 --- a/schemas/digitalIdentifier/ISBN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISBN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ISBN", + "_type": "core:ISBN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/ISSN.schema.tpl.json b/schemas/digitalIdentifier/ISSN.schema.tpl.json index 43253a7a..8c6ea76b 100644 --- a/schemas/digitalIdentifier/ISSN.schema.tpl.json +++ b/schemas/digitalIdentifier/ISSN.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ISSN", + "_type": "core:ISSN", "_categories": [ "publicationReference" ], diff --git a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json index 29ca9e22..f80daa06 100644 --- a/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json +++ b/schemas/digitalIdentifier/IdentifiersDotOrgID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "IdentifiersDotOrgID", + "_type": "core:IdentifiersDotOrgID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/ORCID.schema.tpl.json b/schemas/digitalIdentifier/ORCID.schema.tpl.json index fb5cf58f..d1dc54ca 100644 --- a/schemas/digitalIdentifier/ORCID.schema.tpl.json +++ b/schemas/digitalIdentifier/ORCID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ORCID", + "_type": "core:ORCID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RORID.schema.tpl.json b/schemas/digitalIdentifier/RORID.schema.tpl.json index 4a5a6fd7..694a396f 100644 --- a/schemas/digitalIdentifier/RORID.schema.tpl.json +++ b/schemas/digitalIdentifier/RORID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "RORID", + "_type": "core:RORID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/RRID.schema.tpl.json b/schemas/digitalIdentifier/RRID.schema.tpl.json index 806feca2..42380cb6 100644 --- a/schemas/digitalIdentifier/RRID.schema.tpl.json +++ b/schemas/digitalIdentifier/RRID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "RRID", + "_type": "core:RRID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/SWHID.schema.tpl.json b/schemas/digitalIdentifier/SWHID.schema.tpl.json index c0c78c23..5bb841a4 100644 --- a/schemas/digitalIdentifier/SWHID.schema.tpl.json +++ b/schemas/digitalIdentifier/SWHID.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "SWHID", + "_type": "core:SWHID", "required": [ "identifier" ], diff --git a/schemas/digitalIdentifier/genericIdentifier.tpl.json b/schemas/digitalIdentifier/genericIdentifier.tpl.json index 739b110c..768b3a50 100644 --- a/schemas/digitalIdentifier/genericIdentifier.tpl.json +++ b/schemas/digitalIdentifier/genericIdentifier.tpl.json @@ -1,5 +1,5 @@ { - "_type": "GenericIdentifier", + "_type": "core:GenericIdentifier", "required": [ "emitter", "identifier" @@ -7,9 +7,7 @@ "properties": { "emitter": { "_instruction": "Add the organization that governs and/or emits the identifier.", - "_linkedTypes": [ - "Organization" - ] + "_linkedTypes": ["core:Organization"] }, "identifier": { "type": "string", diff --git a/schemas/digitalIdentifier/stockNumber.schema.tpl.json b/schemas/digitalIdentifier/stockNumber.schema.tpl.json index 07299a85..6488274a 100644 --- a/schemas/digitalIdentifier/stockNumber.schema.tpl.json +++ b/schemas/digitalIdentifier/stockNumber.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "StockNumber", + "_type": "core:StockNumber", "required": [ "identifier", "vendor" @@ -12,7 +12,7 @@ "vendor": { "_instruction": "Add the vendor that has the item with this identifier in stock.", "_linkedTypes": [ - "Organization" + "core:Organization" ] } } diff --git a/schemas/miscellaneous/comment.schema.tpl.json b/schemas/miscellaneous/comment.schema.tpl.json index cb0492b1..65246197 100644 --- a/schemas/miscellaneous/comment.schema.tpl.json +++ b/schemas/miscellaneous/comment.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Comment", + "_type": "core:Comment", "required": [ "about", "comment", @@ -20,7 +20,7 @@ "commenter": { "_instruction": "Add the person that created this comment.", "_linkedTypes": [ - "Person" + "core:Person" ] }, "timestamp": { diff --git a/schemas/miscellaneous/funding.schema.tpl.json b/schemas/miscellaneous/funding.schema.tpl.json index 529f867d..2963fabd 100644 --- a/schemas/miscellaneous/funding.schema.tpl.json +++ b/schemas/miscellaneous/funding.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Funding", + "_type": "core:Funding", "required": [ "funder" ], diff --git a/schemas/miscellaneous/quantitativeValue.schema.tpl.json b/schemas/miscellaneous/quantitativeValue.schema.tpl.json index 1a3ca463..f34ebf9e 100644 --- a/schemas/miscellaneous/quantitativeValue.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValue.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "QuantitativeValue", + "_type": "core:QuantitativeValue", "required": [ "value" ], @@ -7,7 +7,7 @@ "typeOfUncertainty": { "_instruction": "Add the type of uncertainty used to determine the uncertainty for this quantitative value.", "_linkedTypes": [ - "TypeOfUncertainty" + "controlledTerms:TypeOfUncertainty" ] }, "uncertainty": { @@ -22,7 +22,7 @@ "unit": { "_instruction": "Add the unit of measurement of this quantitative value and its uncertainty.", "_linkedTypes": [ - "UnitOfMeasurement" + "controlledTerms:UnitOfMeasurement" ] }, "value": { diff --git a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json index dd1cc7d2..f9a9da6c 100644 --- a/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueArray.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "QuantitativeValueArray", + "_type": "core:QuantitativeValueArray", "required": [ "values" ], @@ -23,15 +23,15 @@ "typeOfUncertainty": { "_instruction": "Add the type of estimation for the uncertainties.", "_linkedTypes": [ - "TypeOfUncertainty" + "controlledTerms:TypeOfUncertainty" ] - }, + }, "unit": { "_instruction": "Add the unit of measurement of the values and their uncertainties.", "_linkedTypes": [ - "UnitOfMeasurement" + "controlledTerms:UnitOfMeasurement" ] - }, + }, "values": { "type": "array", "minItems": 2, diff --git a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json index bf6a6b73..1ab46383 100644 --- a/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json +++ b/schemas/miscellaneous/quantitativeValueRange.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "QuantitativeValueRange", + "_type": "core:QuantitativeValueRange", "required": [ "maxValue", "minValue" @@ -12,7 +12,7 @@ "maxValueUnit": { "_instruction": "Add the unit of measurement for the maximum value.", "_linkedTypes": [ - "UnitOfMeasurement" + "controlledTerms:UnitOfMeasurement" ] }, "minValue": { @@ -22,7 +22,7 @@ "minValueUnit": { "_instruction": "Add the unit of measurement for the minimum value.", "_linkedTypes": [ - "UnitOfMeasurement" + "controlledTerms:UnitOfMeasurement" ] } } diff --git a/schemas/miscellaneous/researchProductGroup.schema.tpl.json b/schemas/miscellaneous/researchProductGroup.schema.tpl.json index 3720e382..17159312 100644 --- a/schemas/miscellaneous/researchProductGroup.schema.tpl.json +++ b/schemas/miscellaneous/researchProductGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ResearchProductGroup", + "_type": "core:ResearchProductGroup", "required": [ "context", "hasPart" diff --git a/schemas/miscellaneous/webResource.schema.tpl.json b/schemas/miscellaneous/webResource.schema.tpl.json index c0f9c264..8c2f3a01 100644 --- a/schemas/miscellaneous/webResource.schema.tpl.json +++ b/schemas/miscellaneous/webResource.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "WebResource", + "_type": "core:WebResource", "required": [ "IRI" ], @@ -11,7 +11,7 @@ "format": { "_instruction": "Add the expected content type of the document at this web resource.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "IRI": { diff --git a/schemas/products/dataset.schema.tpl.json b/schemas/products/dataset.schema.tpl.json index 601856eb..796e193c 100644 --- a/schemas/products/dataset.schema.tpl.json +++ b/schemas/products/dataset.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Dataset", + "_type": "core:Dataset", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "author" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "DOI", - "IdentifiersDotOrgID" + "core:DOI", + "core:IdentifiersDotOrgID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this dataset.", "_linkedTypes": [ - "DatasetVersion" + "core:DatasetVersion" ] } } diff --git a/schemas/products/datasetVersion.schema.tpl.json b/schemas/products/datasetVersion.schema.tpl.json index 8e2f24a2..dd5d8c30 100644 --- a/schemas/products/datasetVersion.schema.tpl.json +++ b/schemas/products/datasetVersion.schema.tpl.json @@ -1,7 +1,7 @@ { - "_type": "DatasetVersion", + "_type": "core:DatasetVersion", "_extends": "products/researchProductVersion.schema.tpl.json", - "required": [ + "required": [ "dataType", "digitalIdentifier", "ethicsAssessment", @@ -25,29 +25,29 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed in this dataset version.", "_linkedTypes": [ - "BehavioralProtocol" + "core:BehavioralProtocol" ] - }, + }, "dataType": { "type": "array", "minItems": 1, "uniqueItems": true, "_instruction": "Add all semantic data types (raw, derived and/or simulated) provided in this dataset version.", "_linkedTypes": [ - "SemanticDataType" + "controlledTerms:SemanticDataType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "DOI", - "IdentifiersDotOrgID" + "core:DOI", + "core:IdentifiersDotOrgID" ] }, "ethicsAssessment": { "_instruction": "Add the result of the ethics assessment of this dataset version.", "_linkedTypes": [ - "EthicsAssessment" + "controlledTerms:EthicsAssessment" ] }, "experimentalApproach": { @@ -56,23 +56,23 @@ "uniqueItems": true, "_instruction": "Add all experimental approaches which this dataset version has deployed.", "_linkedTypes": [ - "ExperimentalApproach" + "controlledTerms:ExperimentalApproach" ] - }, + }, "inputData": { "type": "array", "minItems": 1, "uniqueItems": true, "_instruction": "Add the data that was used as input for this dataset version.", "_linkedTypes": [ - "DOI", - "File", - "FileBundle", - "WebResource", - "BrainAtlas", - "BrainAtlasVersion", - "CommonCoordinateSpace", - "CommonCoordinateSpaceVersion" + "core:DOI", + "core:File", + "core:FileBundle", + "core:WebResource", + "https://openminds.ebrains.eu/sands/BrainAtlas", + "https://openminds.ebrains.eu/sands/BrainAtlasVersion", + "https://openminds.ebrains.eu/sands/CommonCoordinateSpace", + "https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion" ] }, "isAlternativeVersionOf": { @@ -81,20 +81,20 @@ "uniqueItems": true, "_instruction": "Add all dataset versions that can be used alternatively to this dataset version.", "_linkedTypes": [ - "DatasetVersion" + "core:DatasetVersion" ] }, "isNewVersionOf": { "_instruction": "Add the dataset version preceding this dataset version.", "_linkedTypes": [ - "DatasetVersion" + "core:DatasetVersion" ] }, "license": { "_instruction": "Add the license or an online available data usage agreement for this dataset version.", "_linkedTypes": [ - "License", - "WebResource" + "core:License", + "core:WebResource" ] }, "preparationDesign": { @@ -103,7 +103,7 @@ "uniqueItems": true, "_instruction": "Add all preparation types used in this dataset version.", "_linkedTypes": [ - "PreparationType" + "controlledTerms:PreparationType" ] }, "protocol": { @@ -112,7 +112,7 @@ "uniqueItems": true, "_instruction": "Add all protocols that were performed in this dataset version (e.g., for data acquisition or processing).", "_linkedTypes": [ - "Protocol" + "core:Protocol" ] }, "studiedSpecimen": { @@ -121,10 +121,10 @@ "uniqueItems": true, "_instruction": "Add all specimens or sets of specimen that were studied in this dataset.", "_linkedTypes": [ - "Subject", - "SubjectGroup", - "TissueSample", - "TissueSampleCollection" + "core:Subject", + "core:SubjectGroup", + "core:TissueSample", + "core:TissueSampleCollection" ] }, "studyTarget": { diff --git a/schemas/products/device.schema.tpl.json b/schemas/products/device.schema.tpl.json index 2e31381e..e215bbef 100644 --- a/schemas/products/device.schema.tpl.json +++ b/schemas/products/device.schema.tpl.json @@ -14,14 +14,14 @@ "deviceType": { "_instruction": "Add the type of this device.", "_linkedTypes": [ - "DeviceType" + "controlledTerms:DeviceType" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this device.", "_linkedTypes": [ - "DOI", - "RRID" + "core:DOI", + "core:RRID" ] }, "lookupLabel": { diff --git a/schemas/products/metaDataModel.schema.tpl.json b/schemas/products/metaDataModel.schema.tpl.json index d7b5cfe2..84e6ae9c 100644 --- a/schemas/products/metaDataModel.schema.tpl.json +++ b/schemas/products/metaDataModel.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "MetaDataModel", + "_type": "core:MetaDataModel", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,8 +17,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "DOI", - "SWHID" + "core:DOI", + "core:SWHID" ] }, "hasVersion": { @@ -27,7 +27,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this (meta)data model.", "_linkedTypes": [ - "MetaDataModelVersion" + "core:MetaDataModelVersion" ] } } diff --git a/schemas/products/metaDataModelVersion.schema.tpl.json b/schemas/products/metaDataModelVersion.schema.tpl.json index dce40bf2..f2843efd 100644 --- a/schemas/products/metaDataModelVersion.schema.tpl.json +++ b/schemas/products/metaDataModelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "MetaDataModelVersion", + "_type": "core:MetaDataModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "license", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "DOI", - "SWHID" + "core:DOI", + "core:SWHID" ] }, "isAlternativeVersionOf": { @@ -28,19 +28,19 @@ "uniqueItems": true, "_instruction": "Add all (meta)data model versions that can be used alternatively to this (meta)data model version.", "_linkedTypes": [ - "MetaDataModelVersion" + "core:MetaDataModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the (meta)data version preceding this (meta)data model version.", "_linkedTypes": [ - "MetaDataModelVersion" + "core:MetaDataModelVersion" ] }, "license": { "_instruction": "Add the license of this (meta)data model version.", "_linkedTypes": [ - "License" + "core:License" ] }, "serializationFormat": { @@ -49,7 +49,7 @@ "uniqueItems": true, "_instruction": "Add all content types in which (meta)data compliant with this (meta)data model version can be stored in.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "specificationFormat": { @@ -58,13 +58,13 @@ "uniqueItems": true, "_instruction": "Add all content types in which the schemas of this (meta)data model version are stored in.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "type": { "_instruction": "Add the type of this (meta)data model version.", "_linkedTypes": [ - "MetaDataModelType" + "controlledTerms:MetaDataModelType" ] } } diff --git a/schemas/products/model.schema.tpl.json b/schemas/products/model.schema.tpl.json index 86e3a8ed..9fa15427 100644 --- a/schemas/products/model.schema.tpl.json +++ b/schemas/products/model.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Model", + "_type": "core:Model", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "abstractionLevel", @@ -11,7 +11,7 @@ "abstractionLevel": { "_instruction": "Add the abstraction level of this computational model.", "_linkedTypes": [ - "ModelAbstractionLevel" + "controlledTerms:ModelAbstractionLevel" ] }, "developer": { @@ -26,8 +26,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "DOI", - "SWHID" + "core:DOI", + "core:SWHID" ] }, "hasVersion": { @@ -36,13 +36,13 @@ "uniqueItems": true, "_instruction": "Add all versions of this computational model.", "_linkedTypes": [ - "ModelVersion" + "core:ModelVersion" ] }, "scope": { "_instruction": "Add the scope of this computational model.", "_linkedTypes": [ - "ModelScope" + "controlledTerms:ModelScope" ] }, "studyTarget": { diff --git a/schemas/products/modelVersion.schema.tpl.json b/schemas/products/modelVersion.schema.tpl.json index 1278977a..022eb967 100644 --- a/schemas/products/modelVersion.schema.tpl.json +++ b/schemas/products/modelVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ModelVersion", + "_type": "core:ModelVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "required": [ "format", @@ -18,8 +18,8 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "DOI", - "SWHID" + "core:DOI", + "core:SWHID" ] }, "format": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add the content type of this computational model version, or the content types of the files composing the model version.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "inputData": { @@ -37,10 +37,10 @@ "uniqueItems": true, "_instruction": "Add the data that was used as input for this computational model version.", "_linkedTypes": [ - "DOI", - "File", - "FileBundle", - "WebResource" + "core:DOI", + "core:File", + "core:FileBundle", + "core:WebResource" ] }, "isAlternativeVersionOf": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all computational model versions that can be used alternatively to this computational model version.", "_linkedTypes": [ - "ModelVersion" + "core:ModelVersion" ] }, "isNewVersionOf": { "_instruction": "Add the computational model version preceding this computational model version.", "_linkedTypes": [ - "ModelVersion" + "core:ModelVersion" ] }, "license": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this computational model version.", "_linkedTypes": [ - "License" + "core:License" ] }, "outputData": { @@ -73,10 +73,10 @@ "uniqueItems": true, "_instruction": "Add the data that was generated as output by this computational model version.", "_linkedTypes": [ - "DOI", - "File", - "FileBundle", - "WebResource" + "core:DOI", + "core:File", + "core:FileBundle", + "core:WebResource" ] } } diff --git a/schemas/products/project.schema.tpl.json b/schemas/products/project.schema.tpl.json index 55e1ffba..2ad1318f 100644 --- a/schemas/products/project.schema.tpl.json +++ b/schemas/products/project.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Project", + "_type": "core:Project", "required": [ "description", "fullName", diff --git a/schemas/products/researchProductVersion.schema.tpl.json b/schemas/products/researchProductVersion.schema.tpl.json index b8f34acc..16be5c4c 100644 --- a/schemas/products/researchProductVersion.schema.tpl.json +++ b/schemas/products/researchProductVersion.schema.tpl.json @@ -14,13 +14,13 @@ "accessibility": { "_instruction": "Add the accessibility of the data for this research product version.", "_linkedTypes": [ - "ProductAccessibility" + "controlledTerms:ProductAccessibility" ] }, "copyright": { "_instruction": "Enter the copyright information of this research product version.", "_embeddedTypes": [ - "Copyright" + "core:Copyright" ] }, "custodian": { @@ -39,10 +39,10 @@ "fullDocumentation": { "_instruction": "Add the publication or file that acts as the full documentation of this research product version.", "_linkedTypes": [ - "DOI", - "File", - "ISBN", - "WebResource" + "core:DOI", + "core:File", + "core:ISBN", + "core:WebResource" ] }, "fullName": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all funding information of this research product version.", "_linkedTypes": [ - "Funding" + "core:Funding" ] }, "homepage": { @@ -84,7 +84,7 @@ "uniqueItems": true, "_instruction": "Add any other contributions to this research product version that are not covered under 'author'/'developer' or 'custodian'.", "_embeddedTypes": [ - "Contribution" + "core:Contribution" ] }, "relatedPublication": { @@ -106,7 +106,7 @@ "repository": { "_instruction": "Add the file repository of this research product version.", "_linkedTypes": [ - "FileRepository" + "core:FileRepository" ] }, "shortName": { diff --git a/schemas/products/setup.schema.tpl.json b/schemas/products/setup.schema.tpl.json index 4527b5f6..735bfa6a 100644 --- a/schemas/products/setup.schema.tpl.json +++ b/schemas/products/setup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Setup", + "_type": "core:Setup", "_categories": [ "setupComponent" ], @@ -45,7 +45,7 @@ "uniqueItems": true, "_instruction": "Add all types that describe this setup.", "_linkedTypes": [ - "SetupType" + "controlledTerms:SetupType" ] } } diff --git a/schemas/products/software.schema.tpl.json b/schemas/products/software.schema.tpl.json index 7577d9ea..a6712f57 100644 --- a/schemas/products/software.schema.tpl.json +++ b/schemas/products/software.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Software", + "_type": "core:Software", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -17,9 +17,9 @@ "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product. Note that this digital identifier will be used to reference all attached research product versions.", "_linkedTypes": [ - "DOI", - "RRID", - "SWHID" + "core:DOI", + "core:RRID", + "core:SWHID" ] }, "hasVersion": { @@ -28,7 +28,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this software tool.", "_linkedTypes": [ - "SoftwareVersion" + "core:SoftwareVersion" ] } } diff --git a/schemas/products/softwareVersion.schema.tpl.json b/schemas/products/softwareVersion.schema.tpl.json index 3125e4db..850543a5 100644 --- a/schemas/products/softwareVersion.schema.tpl.json +++ b/schemas/products/softwareVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "SoftwareVersion", + "_type": "core:SoftwareVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "_categories": [ "setupComponent" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all categories to which this software version belongs.", "_linkedTypes": [ - "SoftwareApplicationCategory" + "controlledTerms:SoftwareApplicationCategory" ] }, "developer": { @@ -38,15 +38,15 @@ "uniqueItems": true, "_instruction": "Add all operating devices compatible with this software version.", "_linkedTypes": [ - "OperatingDevice" + "controlledTerms:OperatingDevice" ] }, "digitalIdentifier": { "_instruction": "Add the globally unique and persistent digital identifier of this research product version.", "_linkedTypes": [ - "DOI", - "SWHID", - "RRID" + "core:DOI", + "core:SWHID", + "core:RRID" ] }, "feature": { @@ -55,7 +55,7 @@ "uniqueItems": true, "_instruction": "Add all distinguishing characteristics of this software version (e.g., performance, portability or functionality).", "_linkedTypes": [ - "SoftwareFeature" + "controlledTerms:SoftwareFeature" ] }, "hasPart": { @@ -64,7 +64,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that supplement this software version.", "_linkedTypes": [ - "SoftwareVersion" + "core:SoftwareVersion" ] }, "inputFormat": { @@ -73,7 +73,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this software version.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "isAlternativeVersionOf": { @@ -82,13 +82,13 @@ "uniqueItems": true, "_instruction": "Add all software versions that can be used alternatively to this software version.", "_linkedTypes": [ - "SoftwareVersion" + "core:SoftwareVersion" ] }, "isNewVersionOf": { "_instruction": "Add the software version preceding this software version.", "_linkedTypes": [ - "SoftwareVersion" + "core:SoftwareVersion" ] }, "language": { @@ -97,7 +97,7 @@ "uniqueItems": true, "_instruction": "Add all languages supported by this software version.", "_linkedTypes": [ - "Language" + "controlledTerms:Language" ] }, "license": { @@ -106,7 +106,7 @@ "uniqueItems": true, "_instruction": "Add all licenses of this software version.", "_linkedTypes": [ - "License" + "core:License" ] }, "operatingSystem": { @@ -115,7 +115,7 @@ "uniqueItems": true, "_instruction": "Add all operating systems supported by this software version.", "_linkedTypes": [ - "OperatingSystem" + "controlledTerms:OperatingSystem" ] }, "outputFormat": { @@ -124,7 +124,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this software version.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "programmingLanguage": { @@ -133,7 +133,7 @@ "uniqueItems": true, "_instruction": "Add all programming languages used to develop this software version.", "_linkedTypes": [ - "ProgrammingLanguage" + "controlledTerms:ProgrammingLanguage" ] }, "requirement": { diff --git a/schemas/products/webService.schema.tpl.json b/schemas/products/webService.schema.tpl.json index 69b9095d..5ae96f81 100644 --- a/schemas/products/webService.schema.tpl.json +++ b/schemas/products/webService.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "WebService", + "_type": "core:WebService", "_extends": "products/researchProduct.schema.tpl.json", "required": [ "developer" @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all versions of this web service.", "_linkedTypes": [ - "WebServiceVersion" + "core:WebServiceVersion" ] } } diff --git a/schemas/products/webServiceVersion.schema.tpl.json b/schemas/products/webServiceVersion.schema.tpl.json index 1619947d..feb5fa8d 100644 --- a/schemas/products/webServiceVersion.schema.tpl.json +++ b/schemas/products/webServiceVersion.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "WebServiceVersion", + "_type": "core:WebServiceVersion", "_extends": "products/researchProductVersion.schema.tpl.json", "properties": { "developer": { @@ -17,7 +17,7 @@ "uniqueItems": true, "_instruction": "Add all software versions that are components of this web service version.", "_linkedTypes": [ - "SoftwareVersion" + "core:SoftwareVersion" ] }, "inputFormat": { @@ -26,7 +26,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be used as input by this web service version.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "isAlternativeVersionOf": { @@ -35,13 +35,13 @@ "uniqueItems": true, "_instruction": "Add all web service versions that can be used alternatively to this web service version.", "_linkedTypes": [ - "WebServiceVersion" + "core:WebServiceVersion" ] }, "isNewVersionOf": { "_instruction": "Add the web service version preceding this web service version.", "_linkedTypes": [ - "WebServiceVersion" + "core:WebServiceVersion" ] }, "outputFormat": { @@ -50,7 +50,7 @@ "uniqueItems": true, "_instruction": "Add all content types that can be generated as output by this web service version.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] } } diff --git a/schemas/research/activity.schema.tpl.json b/schemas/research/activity.schema.tpl.json index 6e4cbdb5..402be558 100644 --- a/schemas/research/activity.schema.tpl.json +++ b/schemas/research/activity.schema.tpl.json @@ -10,7 +10,7 @@ "uniqueItems": true, "_instruction": "Add any user-defined parameters grouped in context-specific sets that are not covered in the standardized properties of this activity.", "_embeddedTypes": [ - "CustomPropertySet" + "core:CustomPropertySet" ] }, "description": { @@ -31,8 +31,8 @@ "uniqueItems": true, "_instruction": "Add all inputs used by this activity.", "_linkedTypes": [ - "File", - "FileBundle" + "core:File", + "core:FileBundle" ] }, "lookupLabel": { @@ -45,8 +45,8 @@ "uniqueItems": true, "_instruction": "Add all outputs generated by this activity.", "_linkedTypes": [ - "File", - "FileBundle" + "core:File", + "core:FileBundle" ] }, "performedBy": { diff --git a/schemas/research/behavioralProtocol.schema.tpl.json b/schemas/research/behavioralProtocol.schema.tpl.json index 7378fd8d..37b9f330 100644 --- a/schemas/research/behavioralProtocol.schema.tpl.json +++ b/schemas/research/behavioralProtocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "BehavioralProtocol", + "_type": "core:BehavioralProtocol", "_categories": [ "fileOrigin" ], @@ -14,9 +14,9 @@ "uniqueItems": true, "_instruction": "Add all sources in which this behavioral protocol is described in detail.", "_linkedTypes": [ - "DOI", - "File", - "WebResource" + "core:DOI", + "core:File", + "core:WebResource" ] }, "description": { @@ -37,8 +37,8 @@ "uniqueItems": true, "_instruction": "Add all stimulation approaches and/or techniques used within this behavioral protocol.", "_linkedTypes": [ - "StimulationApproach", - "StimulationTechnique" + "controlledTerms:StimulationApproach", + "controlledTerms:StimulationTechnique" ] }, "stimulusType": { diff --git a/schemas/research/configuration.schema.tpl.json b/schemas/research/configuration.schema.tpl.json index a300d529..63c93129 100644 --- a/schemas/research/configuration.schema.tpl.json +++ b/schemas/research/configuration.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Configuration", + "_type": "core:Configuration", "required": [ "configuration", "format" @@ -12,7 +12,7 @@ "format": { "_instruction": "Add the content type of this configuration.", "_linkedTypes": [ - "ContentType" + "core:ContentType" ] }, "lookupLabel": { diff --git a/schemas/research/customPropertySet.schema.tpl.json b/schemas/research/customPropertySet.schema.tpl.json index dc9503ba..e86aabdc 100644 --- a/schemas/research/customPropertySet.schema.tpl.json +++ b/schemas/research/customPropertySet.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "CustomPropertySet", + "_type": "core:CustomPropertySet", "required": [ "context", "dataLocation", @@ -13,9 +13,9 @@ "dataLocation": { "_instruction": "Add the location of the data that define the custom property set for the given context (e.g., stored as file or other entities such as property-value lists).", "_linkedTypes": [ - "Configuration", - "File", - "PropertyValueList" + "core:Configuration", + "core:File", + "core:PropertyValueList" ] }, "relevantFor": { diff --git a/schemas/research/deviceUsage.schema.tpl.json b/schemas/research/deviceUsage.schema.tpl.json index 216715ff..e6dda232 100644 --- a/schemas/research/deviceUsage.schema.tpl.json +++ b/schemas/research/deviceUsage.schema.tpl.json @@ -12,8 +12,8 @@ "uniqueItems": true, "_instruction": "Add all files or file bundles containing additional information about the usage of this device.", "_linkedTypes": [ - "File", - "FileBundle" + "core:File", + "core:FileBundle" ] }, "lookupLabel": { @@ -23,8 +23,8 @@ "usedSpecimen": { "_instruction": "Add the state of the tissue sample or subject that this device was used on.", "_linkedTypes": [ - "SubjectState", - "TissueSampleState" + "core:SubjectState", + "core:TissueSampleState" ] } } diff --git a/schemas/research/experimentalActivity.schema.tpl.json b/schemas/research/experimentalActivity.schema.tpl.json index 15541755..03ac28ca 100644 --- a/schemas/research/experimentalActivity.schema.tpl.json +++ b/schemas/research/experimentalActivity.schema.tpl.json @@ -8,13 +8,13 @@ "isPartOf": { "_instruction": "Add the dataset version in which this activity was conducted.", "_linkedTypes": [ - "DatasetVersion" + "core:DatasetVersion" ] }, "preparationDesign": { "_instruction": "Add the initial preparation type for this activity.", "_linkedTypes": [ - "PreparationType" + "controlledTerms:PreparationType" ] }, "protocol": { @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add all protocols used during this activity.", "_linkedTypes": [ - "Protocol" + "core:Protocol" ] } } diff --git a/schemas/research/numericalProperty.schema.tpl.json b/schemas/research/numericalProperty.schema.tpl.json index d4a0e5f2..33f4d40b 100644 --- a/schemas/research/numericalProperty.schema.tpl.json +++ b/schemas/research/numericalProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "NumericalProperty", + "_type": "core:NumericalProperty", "required": [ "name", "value" @@ -14,8 +14,8 @@ "minItems": 1, "_instruction": "Enter all quantitative values that are described by this numerical property.", "_embeddedTypes": [ - "QuantitativeValue", - "QuantitativeValueRange" + "core:QuantitativeValue", + "core:QuantitativeValueRange" ] } } diff --git a/schemas/research/propertyValueList.schema.tpl.json b/schemas/research/propertyValueList.schema.tpl.json index 6b26188e..04c46451 100644 --- a/schemas/research/propertyValueList.schema.tpl.json +++ b/schemas/research/propertyValueList.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "PropertyValueList", + "_type": "core:PropertyValueList", "required": [ "propertyValuePair" ], @@ -14,8 +14,8 @@ "uniqueItems": true, "_instruction": "Enter all numerical and string property-value pairs that belong to this property-value list.", "_embeddedTypes": [ - "NumericalProperty", - "StringProperty" + "core:NumericalProperty", + "core:StringProperty" ] } } diff --git a/schemas/research/protocol.schema.tpl.json b/schemas/research/protocol.schema.tpl.json index 4f164f61..b52ba837 100644 --- a/schemas/research/protocol.schema.tpl.json +++ b/schemas/research/protocol.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Protocol", + "_type": "core:Protocol", "required": [ "description", "name", @@ -9,9 +9,9 @@ "describedIn": { "_instruction": "Add a publication or file in which this protocol is (originally) described in detail.", "_linkedTypes": [ - "DOI", - "File", - "WebResource" + "core:DOI", + "core:File", + "core:WebResource" ] }, "description": { diff --git a/schemas/research/protocolExecution.schema.tpl.json b/schemas/research/protocolExecution.schema.tpl.json index 834be67a..5fdca0b0 100644 --- a/schemas/research/protocolExecution.schema.tpl.json +++ b/schemas/research/protocolExecution.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "ProtocolExecution", + "_type": "core:ProtocolExecution", "_extends": "research/experimentalActivity.schema.tpl.json", "properties": { "behavioralProtocol": { @@ -8,29 +8,29 @@ "uniqueItems": true, "_instruction": "Add all behavioral protocols that were performed during this protocol execution.", "_linkedTypes": [ - "BehavioralProtocol" + "core:BehavioralProtocol" ] }, "input": { "_linkedTypes": [ - "File", - "FileBundle", - "SubjectGroupState", - "SubjectState", - "TissueSampleCollectionState", - "TissueSampleState", - "BrainAtlasVersion", - "CommonCoordinateSpaceVersion" + "core:File", + "core:FileBundle", + "core:SubjectGroupState", + "core:SubjectState", + "core:TissueSampleCollectionState", + "core:TissueSampleState", + "https://openminds.ebrains.eu/sands/BrainAtlasVersion", + "https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion" ] }, "output": { "_linkedTypes": [ - "File", - "FileBundle", - "SubjectGroupState", - "SubjectState", - "TissueSampleCollectionState", - "TissueSampleState" + "core:File", + "core:FileBundle", + "core:SubjectGroupState", + "core:SubjectState", + "core:TissueSampleCollectionState", + "core:TissueSampleState" ] } } diff --git a/schemas/research/specimen.schema.tpl.json b/schemas/research/specimen.schema.tpl.json index 726cd700..94d5bb42 100644 --- a/schemas/research/specimen.schema.tpl.json +++ b/schemas/research/specimen.schema.tpl.json @@ -9,7 +9,7 @@ "biologicalSex": { "_instruction": "Add the biological sex of this specimen.", "_linkedTypes": [ - "BiologicalSex" + "controlledTerms:BiologicalSex" ] }, "internalIdentifier": { @@ -23,8 +23,8 @@ "species": { "_instruction": "Add the species or strain (a sub-type of a genetic variant of species) of this specimen.", "_linkedTypes": [ - "Species", - "Strain" + "controlledTerms:Species", + "core:Strain" ] } } diff --git a/schemas/research/specimenSet.schema.tpl.json b/schemas/research/specimenSet.schema.tpl.json index 2f6ff4e8..ea0ae4bb 100644 --- a/schemas/research/specimenSet.schema.tpl.json +++ b/schemas/research/specimenSet.schema.tpl.json @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add the biological sex of all specimen in this set.", "_linkedTypes": [ - "BiologicalSex" + "controlledTerms:BiologicalSex" ] }, "internalIdentifier": { @@ -33,8 +33,8 @@ "uniqueItems": true, "_instruction": "Add the species and/or strain (a sub-type of a genetic variant of species) of all specimen in this set.", "_linkedTypes": [ - "Species", - "Strain" + "controlledTerms:Species", + "core:Strain" ] } } diff --git a/schemas/research/specimenState.schema.tpl.json b/schemas/research/specimenState.schema.tpl.json index 586b6c68..fc7eb6dd 100644 --- a/schemas/research/specimenState.schema.tpl.json +++ b/schemas/research/specimenState.schema.tpl.json @@ -10,8 +10,8 @@ "age": { "_instruction": "Enter the age of the specimen (set) in this state.", "_embeddedTypes": [ - "QuantitativeValue", - "QuantitativeValueRange" + "core:QuantitativeValue", + "core:QuantitativeValueRange" ] }, "internalIdentifier": { @@ -28,22 +28,22 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that the specimen (set) in this state has and/or is a model for.", "_linkedTypes": [ - "Disease", - "DiseaseModel" + "controlledTerms:Disease", + "controlledTerms:DiseaseModel" ] }, "relativeTimeIndication": { "_instruction": "If there is a temporal relation between the states of a specimen (set), enter the relative time that has passed between this and the preceding specimen (set) state referenced under 'descendedFrom'.", "_embeddedTypes": [ - "QuantitativeValue", - "QuantitativeValueRange" + "core:QuantitativeValue", + "core:QuantitativeValueRange" ] }, "weight": { "_instruction": "Enter the weight of the specimen (set) in this state.", "_embeddedTypes": [ - "QuantitativeValue", - "QuantitativeValueRange" + "core:QuantitativeValue", + "core:QuantitativeValueRange" ] } } diff --git a/schemas/research/strain.schema.tpl.json b/schemas/research/strain.schema.tpl.json index 607f308f..49839d49 100644 --- a/schemas/research/strain.schema.tpl.json +++ b/schemas/research/strain.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Strain", + "_type": "core:Strain", "required": [ "geneticStrainType", "name", @@ -22,13 +22,13 @@ "uniqueItems": true, "_instruction": "Add the background strain that explains the majority of the genetic background and/or causes the majority of the prominent traits. If two strains contributed equally, state both.", "_linkedTypes": [ - "Strain" + "core:Strain" ] }, "breedingType": { "_instruction": "Add the breeding type for this strain.", "_linkedTypes": [ - "BreedingType" + "controlledTerms:BreedingType" ] }, "description": { @@ -38,7 +38,7 @@ "digitalIdentifier": { "_instruction": "Add the 'Research Resource Identifier' (RRID) of this strain.", "_linkedTypes": [ - "RRID" + "core:RRID" ] }, "diseaseModel": { @@ -47,14 +47,14 @@ "uniqueItems": true, "_instruction": "Add all (human) diseases and/or conditions that this strain is a model for.", "_linkedTypes": [ - "Disease", - "DiseaseModel" + "controlledTerms:Disease", + "controlledTerms:DiseaseModel" ] }, "geneticStrainType": { "_instruction": "Add the genetic background type of this strain.", "_linkedTypes": [ - "GeneticStrainType" + "controlledTerms:GeneticStrainType" ] }, "laboratoryCode": { @@ -85,13 +85,13 @@ "species": { "_instruction": "Add the species of this strain.", "_linkedTypes": [ - "Species" + "controlledTerms:Species" ] }, "stockNumber": { "_instruction": "Add the stock number from the vendor the strain was supplied from/is in stock at.", "_embeddedTypes": [ - "StockNumber" + "core:StockNumber" ] }, "synonym": { diff --git a/schemas/research/stringProperty.schema.tpl.json b/schemas/research/stringProperty.schema.tpl.json index 61dd860f..32b17745 100644 --- a/schemas/research/stringProperty.schema.tpl.json +++ b/schemas/research/stringProperty.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "StringProperty", + "_type": "core:StringProperty", "required": [ "name", "value" diff --git a/schemas/research/subject.schema.tpl.json b/schemas/research/subject.schema.tpl.json index adfa7876..91afaf4b 100644 --- a/schemas/research/subject.schema.tpl.json +++ b/schemas/research/subject.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "Subject", + "_type": "core:Subject", "_extends": "research/specimen.schema.tpl.json", "required": [ "studiedState" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add all subject groups of which this subject is a member.", "_linkedTypes": [ - "SubjectGroup" + "core:SubjectGroup" ] }, "studiedState": { @@ -20,7 +20,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject was studied.", "_linkedTypes": [ - "SubjectState" + "core:SubjectState" ] } } diff --git a/schemas/research/subjectGroup.schema.tpl.json b/schemas/research/subjectGroup.schema.tpl.json index caa9e2f4..4f40ac4a 100644 --- a/schemas/research/subjectGroup.schema.tpl.json +++ b/schemas/research/subjectGroup.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "SubjectGroup", + "_type": "core:SubjectGroup", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "studiedState" @@ -16,7 +16,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this subject group was studied.", "_linkedTypes": [ - "SubjectGroupState" + "core:SubjectGroupState" ] } } diff --git a/schemas/research/subjectGroupState.schema.tpl.json b/schemas/research/subjectGroupState.schema.tpl.json index 72bc6fd6..009180aa 100644 --- a/schemas/research/subjectGroupState.schema.tpl.json +++ b/schemas/research/subjectGroupState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "SubjectGroupState", + "_type": "core:SubjectGroupState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -11,7 +11,7 @@ "uniqueItems": true, "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "AgeCategory" + "controlledTerms:AgeCategory" ] }, "attribute": { @@ -20,13 +20,13 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject group state.", "_linkedTypes": [ - "SubjectAttribute" + "controlledTerms:SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject group state.", "_linkedTypes": [ - "SubjectGroupState" + "core:SubjectGroupState" ] }, "handedness": { @@ -35,7 +35,7 @@ "uniqueItems": true, "_instruction": "Add all preferred types of handedness of the subject group in this state.", "_linkedTypes": [ - "Handedness" + "controlledTerms:Handedness" ] } } diff --git a/schemas/research/subjectState.schema.tpl.json b/schemas/research/subjectState.schema.tpl.json index f71f3b49..c1937064 100644 --- a/schemas/research/subjectState.schema.tpl.json +++ b/schemas/research/subjectState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "SubjectState", + "_type": "core:SubjectState", "_extends": "research/specimenState.schema.tpl.json", "required": [ "ageCategory" @@ -8,7 +8,7 @@ "ageCategory": { "_instruction": "Add the age category of the subject in this state.", "_linkedTypes": [ - "AgeCategory" + "controlledTerms:AgeCategory" ] }, "attribute": { @@ -17,19 +17,19 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this subject state.", "_linkedTypes": [ - "SubjectAttribute" + "controlledTerms:SubjectAttribute" ] }, "descendedFrom": { "_instruction": "Add the previous subject state.", "_linkedTypes": [ - "SubjectState" + "core:SubjectState" ] }, "handedness": { "_instruction": "Add the preferred handedness of the subject in this state.", "_linkedTypes": [ - "Handedness" + "controlledTerms:Handedness" ] } } diff --git a/schemas/research/tissueSample.schema.tpl.json b/schemas/research/tissueSample.schema.tpl.json index 877809bd..6b4117dc 100644 --- a/schemas/research/tissueSample.schema.tpl.json +++ b/schemas/research/tissueSample.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "TissueSample", + "_type": "core:TissueSample", "_extends": "research/specimen.schema.tpl.json", "required": [ "origin", @@ -22,7 +22,7 @@ "uniqueItems": true, "_instruction": "Add all tissue sample collections this tissue sample is part of.", "_linkedTypes": [ - "TissueSampleCollection" + "core:TissueSampleCollection" ] }, "laterality": { @@ -32,15 +32,15 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample originates from.", "_linkedTypes": [ - "Laterality" + "controlledTerms:Laterality" ] }, "origin": { "_instruction": "Add the biogical origin of this tissue sample.", "_linkedTypes": [ - "CellType", - "Organ", - "OrganismSubstance" + "controlledTerms:CellType", + "controlledTerms:Organ", + "controlledTerms:OrganismSubstance" ] }, "studiedState": { @@ -49,13 +49,13 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample was studied.", "_linkedTypes": [ - "TissueSampleState" + "core:TissueSampleState" ] }, "type": { "_instruction": "Add the type of this tissue sample.", "_linkedTypes": [ - "TissueSampleType" + "controlledTerms:TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollection.schema.tpl.json b/schemas/research/tissueSampleCollection.schema.tpl.json index a1d62a04..55817a9c 100644 --- a/schemas/research/tissueSampleCollection.schema.tpl.json +++ b/schemas/research/tissueSampleCollection.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "TissueSampleCollection", + "_type": "core:TissueSampleCollection", "_extends": "research/specimenSet.schema.tpl.json", "required": [ "origin", @@ -23,7 +23,7 @@ "uniqueItems": true, "_instruction": "Add one or both sides of the body, bilateral organ or bilateral organ part that this tissue sample collection originates from.", "_linkedTypes": [ - "Laterality" + "controlledTerms:Laterality" ] }, "numberOfTissueSamples": { @@ -37,9 +37,9 @@ "uniqueItems": true, "_instruction": "Add the biogical origin of all tissue samples in this collection.", "_linkedTypes": [ - "CellType", - "Organ", - "OrganismSubstance" + "controlledTerms:CellType", + "controlledTerms:Organ", + "controlledTerms:OrganismSubstance" ] }, "studiedState": { @@ -48,7 +48,7 @@ "uniqueItems": true, "_instruction": "Add all states in which this tissue sample collection was studied.", "_linkedTypes": [ - "TissueSampleCollectionState" + "core:TissueSampleCollectionState" ] }, "type": { @@ -57,7 +57,7 @@ "uniqueItems": true, "_instruction": "Add the type of all tissue samples in this collection.", "_linkedTypes": [ - "TissueSampleType" + "controlledTerms:TissueSampleType" ] } } diff --git a/schemas/research/tissueSampleCollectionState.schema.tpl.json b/schemas/research/tissueSampleCollectionState.schema.tpl.json index ae705e52..1bce2b52 100644 --- a/schemas/research/tissueSampleCollectionState.schema.tpl.json +++ b/schemas/research/tissueSampleCollectionState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "TissueSampleCollectionState", + "_type": "core:TissueSampleCollectionState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample collection state.", "_linkedTypes": [ - "TissueSampleAttribute" + "controlledTerms:TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample collection state.", "_linkedTypes": [ - "SubjectGroupState", - "SubjectState", - "TissueSampleCollectionState", - "TissueSampleState" + "core:SubjectGroupState", + "core:SubjectState", + "core:TissueSampleCollectionState", + "core:TissueSampleState" ] } } diff --git a/schemas/research/tissueSampleState.schema.tpl.json b/schemas/research/tissueSampleState.schema.tpl.json index 4f8a9686..ee507777 100644 --- a/schemas/research/tissueSampleState.schema.tpl.json +++ b/schemas/research/tissueSampleState.schema.tpl.json @@ -1,5 +1,5 @@ { - "_type": "TissueSampleState", + "_type": "core:TissueSampleState", "_extends": "research/specimenState.schema.tpl.json", "properties": { "attribute": { @@ -8,7 +8,7 @@ "uniqueItems": true, "_instruction": "Add all attributes that can be ascribed to this tissue sample state.", "_linkedTypes": [ - "TissueSampleAttribute" + "controlledTerms:TissueSampleAttribute" ] }, "descendedFrom": { @@ -17,10 +17,10 @@ "uniqueItems": true, "_instruction": "Add all specimen states used to produce or obtain this tissue sample state.", "_linkedTypes": [ - "SubjectGroupState", - "SubjectState", - "TissueSampleCollectionState", - "TissueSampleState" + "core:SubjectGroupState", + "core:SubjectState", + "core:TissueSampleCollectionState", + "core:TissueSampleState" ] } } From 3db47bdc78289e028b1d1bc9882b85bf6062ea1a Mon Sep 17 00:00:00 2001 From: Raphael-Gazzotti <125291580+Raphael-Gazzotti@users.noreply.github.com> Date: Wed, 16 Oct 2024 13:27:05 +0200 Subject: [PATCH 4/4] Update softwareVersion.schema.tpl.json --- schemas/products/softwareVersion.schema.tpl.json | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/schemas/products/softwareVersion.schema.tpl.json b/schemas/products/softwareVersion.schema.tpl.json index 850543a5..4fa6f98f 100644 --- a/schemas/products/softwareVersion.schema.tpl.json +++ b/schemas/products/softwareVersion.schema.tpl.json @@ -64,7 +64,10 @@ "uniqueItems": true, "_instruction": "Add all software versions that supplement this software version.", "_linkedTypes": [ - "core:SoftwareVersion" + "core:ModelVersion", + "core:SoftwareVersion", + "sands:BrainAtlasVersion", + "sands:CommonCoordinateSpaceVersion" ] }, "inputFormat": {