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Activation of mapping parameter in UI causes en error #22

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jonquet opened this issue May 1, 2018 · 3 comments
Open

Activation of mapping parameter in UI causes en error #22

jonquet opened this issue May 1, 2018 · 3 comments
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@jonquet
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jonquet commented May 1, 2018

Just activate mapping expansion in the UI and it generates an error.

Se produit aussi sur l'AgroPortal Annotator

@twktheainur
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N'est-ce pas l'erreur que nous avons trouvé la dernière fois, venant de l'utilisation de include= en conjonction avec les mappings? Le proxy ajoute include=cui,semanticTyoe pour récupérer les CUI et types sémantiques

ncbo#4

Du coup sur ton lien si j'ajoute include=prefLabel ça cause bien internal server error:

http://data.bioportal.lirmm.fr/annotator/?text=néoplasme%20malin&longest_only=true&display_links=false&display_context=false&apikey=1de0a270-29c5-4dda-b043-7c3580628cd5&expand_mappings=true&include=prefLabel

@twktheainur
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I can solve this problem if I revert to using individual REST request for individual annotated classes in order to get the CUIs and semantic types. The alternative is to push a fix in the upstream annotator code

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