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tests.yml
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name: tests
on:
push:
branches:
- main
paths:
- '**.py'
- '.github/workflows/tests.yml'
- 'pyproject.toml'
pull_request:
branches:
- main
jobs:
lint:
name: lint
runs-on: ubuntu-latest
steps:
- name: clone repository
uses: actions/checkout@v3
- name: install Python
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: load cached Python installation
id: cache
uses: actions/cache@v3
with:
path: ${{ env.pythonLocation }}
key: lint-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}
- name: install linters
run: pip install flake8 oitnb
- name: lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: lint with oitnb
run: oitnb . --check
test:
needs: lint
name: test
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ ubuntu-latest, macos-latest ]
python-version: [ '3.8', '3.9', '3.10', '3.11' ]
exclude:
- os: macos-latest
python-version: '3.11'
steps:
- name: clone repository
uses: actions/checkout@v3
- name: install Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: load cached Python installation
id: cache
uses: actions/cache@v3
with:
path: ${{ env.pythonLocation }}
key: test-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}
- name: install linux dependencies
run: |
sudo apt update
sudo apt install libhdf5-dev
sudo apt install libnetcdf-dev
if: runner.os == 'Linux'
- name: install macos dependencies
run: |
brew install hdf5
brew install netcdf
if: runner.os == 'macOS'
- name: install repo
run: |
pip install ".[testing]"
python -m pip install --upgrade --force-reinstall --no-deps --no-cache-dir netcdf4 --no-binary netcdf4
- name: run tests
run: pytest --numprocesses auto
test_with_coverage:
needs: [ lint, test ]
name: test with coverage
runs-on: ubuntu-latest
steps:
- name: clone repository
uses: actions/checkout@v3
- name: install Python
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: load cached Python installation
id: cache
uses: actions/cache@v3
with:
path: ${{ env.pythonLocation }}
key: test-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }}
- name: install linux dependencies
run: |
sudo apt update
sudo apt install libhdf5-dev
sudo apt install libnetcdf-dev
if: runner.os == 'Linux'
- name: install macos dependencies
run: |
brew install hdf5
brew install netcdf
if: runner.os == 'macOS'
- name: install repo
run: |
pip install ".[testing]"
python -m pip install --upgrade --force-reinstall --no-deps --no-cache-dir netcdf4 --no-binary netcdf4
- name: run tests with coverage
run: pytest --numprocesses auto --cov . --cov-report xml:coverage.xml
- name: show coverage report
run: coverage report
- name: upload coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: coverage.xml
fail_ci_if_error: true