diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index 9eae1c78d..ccba390f9 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -43,7 +43,6 @@ - diff --git a/src/ontology/components/develops-from-chains.owl b/src/ontology/components/develops-from-chains.owl deleted file mode 100644 index 872b459c7..000000000 --- a/src/ontology/components/develops-from-chains.owl +++ /dev/null @@ -1,13 +0,0 @@ -Prefix(:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(rdfs:=) - - -Ontology( - -SubObjectPropertyOf(ObjectPropertyChain( ) ) -SubObjectPropertyOf(ObjectPropertyChain( ) ) -) \ No newline at end of file diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index e9503de8d..422a6c834 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -55,7 +55,6 @@ treat-xrefs-as-equivalent: VSAO treat-xrefs-as-is_a: BFO treat-xrefs-as-is_a: VHOG remark: Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. -import: http://purl.obolibrary.org/obo/uberon/components/develops-from-chains.owl import: http://purl.obolibrary.org/obo/uberon/components/disjoint_union_over.owl import: http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl import: http://purl.obolibrary.org/obo/uberon/components/hra_subset.owl diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 3b3dd4c14..86bd0a49e 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -117,9 +117,6 @@ $(OWLSRC): $(SRC) $(REPORTDIR)/$(SRC)-gocheck $(REPORTDIR)/$(SRC)-iconv -o $@ # Step 2: Reasoning. -# For the temporary injection of property chains, see -# -DEVELOPS_FROM_CHAIN=$(COMPONENTSDIR)/develops-from-chains.owl # The 'materialize' step is too resource-intensive for the GitHub # Action runners, so we leave it out when running online QC checks, see # @@ -128,13 +125,11 @@ MATERIALIZE= else MATERIALIZE = materialize -T $(CONFIGDIR)/basic_properties.txt -r elk endif -$(POSTPROCESS_SRC): $(OWLSRC) $(BRIDGEDIR)/uberon-bridge-to-bfo.owl $(DEVELOPS_FROM_CHAIN) +$(POSTPROCESS_SRC): $(OWLSRC) $(BRIDGEDIR)/uberon-bridge-to-bfo.owl $(ROBOT) merge -i $(OWLSRC) -i $(BRIDGEDIR)/uberon-bridge-to-bfo.owl \ - -i $(DEVELOPS_FROM_CHAIN) \ relax $(MATERIALIZE) \ reason -r elk --exclude-duplicate-axioms true \ --equivalent-classes-allowed asserted-only \ - unmerge -i $(DEVELOPS_FROM_CHAIN) \ annotate -O $(URIBASE)/uberon.owl -V $(RELEASE)/uberon.owl -o $@ # Step 3: Postprocessing. We merge some files that are derived from the