diff --git a/src/ontology/modules/obsolete.owl b/src/ontology/modules/obsolete.owl index a9d381f0..d1a15197 100644 --- a/src/ontology/modules/obsolete.owl +++ b/src/ontology/modules/obsolete.owl @@ -76,6 +76,12 @@ + <!-- http://purl.obolibrary.org/obo/IAO_0000234 --> + + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234"/> + + + <!-- http://purl.obolibrary.org/obo/IAO_0100001 --> <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/> @@ -1140,6 +1146,20 @@ + <!-- http://purl.obolibrary.org/obo/OBI_1110132 --> + + <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110132"> + <rdfs:subClassOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#ObsoleteClass"/> + <obo:IAO_0000115>A transmembrane glycoprotein that serves as a co-receptor for the T cell receptor.</obo:IAO_0000115> + <obo:IAO_0000118>CD8</obo:IAO_0000118> + <obo:IAO_0000234>https://github.com/obi-ontology/obi/issues/353</obo:IAO_0000234> + <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/PR_000025402"/> + <rdfs:label>obsolete CD8 receptor</rdfs:label> + <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated> + </owl:Class> + + + <!-- http://purl.obolibrary.org/obo/REO_0000171 --> <owl:Class rdf:about="http://purl.obolibrary.org/obo/REO_0000171"> diff --git a/src/ontology/obi-edit.owl b/src/ontology/obi-edit.owl index c9a48eb8..234b7a23 100644 --- a/src/ontology/obi-edit.owl +++ b/src/ontology/obi-edit.owl @@ -31146,7 +31146,7 @@ MHB 3-5-13: Need to review axiom on this class in light of clarification that it <owl:complementOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/> - <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_1110132"/> + <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000025402"/> </owl:Restriction> </owl:complementOf> </owl:Class> @@ -31185,7 +31185,7 @@ MHB 3-5-13: Need to review axiom on this class in light of clarification that it <owl:complementOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/> - <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_1110132"/> + <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000001004"/> </owl:Restriction> </owl:complementOf> </owl:Class> @@ -31193,7 +31193,7 @@ MHB 3-5-13: Need to review axiom on this class in light of clarification that it <owl:complementOf> <owl:Restriction> <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/> - <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000001004"/> + <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000025402"/> </owl:Restriction> </owl:complementOf> </owl:Class> @@ -31880,21 +31880,6 @@ MHB 3-5-13: Need to review axiom on this class in light of clarification that it - <!-- http://purl.obolibrary.org/obo/OBI_1110132 --> - - <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110132"> - <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PR_000000001"/> - <obo:IAO_0000111>CD8 receptor</obo:IAO_0000111> - <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000121"/> - <obo:IAO_0000115>A transmembrane glycoprotein that serves as a co-receptor for the T cell receptor.</obo:IAO_0000115> - <obo:IAO_0000116>This term does not belong in ONTIE. It should be imported from PRO, but there seems to be no appropriate term as of 08/17/2009.</obo:IAO_0000116> - <obo:IAO_0000118>CD8</obo:IAO_0000118> - <obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/CD8</obo:IAO_0000119> - <rdfs:label>CD8 receptor</rdfs:label> - </owl:Class> - - - <!-- http://purl.obolibrary.org/obo/OBI_1110182 --> <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_1110182"> diff --git a/src/ontology/templates/obsolete.tsv b/src/ontology/templates/obsolete.tsv index 200ddb54..3cb52b68 100755 --- a/src/ontology/templates/obsolete.tsv +++ b/src/ontology/templates/obsolete.tsv @@ -67,5 +67,6 @@ OBI:0600003 obsolete performing a clinical assessment metadata complete clinica OBI:0600065 obsolete_defined processes organizational term Place holder class, see editor note OBI branch derived PlanAndPlannedProcess Branch subclass Obsolete Class true IAO:0000226 OBI:1110002 obsolete_occurrence of disease metadata incomplete An occurrence of disease is a process involving pathologic changes within an organism IEDB IEDB subclass Obsolete Class true IAO:0000228 OBI:1110055 obsolete_disease organizational term placeholder to be imported from disease ontology IEDB IEDB subclass Obsolete Class true IAO:0000228 OGMS:0000031 +OBI:1110132 obsolete CD8 receptor CD8 A transmembrane glycoprotein that serves as a co-receptor for the T cell receptor. https://github.com/obi-ontology/obi/issues/353 subclass Obsolete Class true PR:000025402 REO:0000171 obsolete molecular label role ready for release molecular tracer role A reagent role inhering in a molecular entity intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay. OBI developer call, 3-12-12 Group: OBI subclass Obsolete Class true OBI:0002743 REO:0000280 obsolete molecular label ready for release molecular tracer A molecular reagent intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay OBI developer call, 3-12-12 Group: OBI subclass Obsolete Class true OBI:0002744