From 7e621d6674db65be14b5b1fdb8141b86c6093c38 Mon Sep 17 00:00:00 2001 From: mathiasg Date: Thu, 2 Jun 2022 10:24:03 -0400 Subject: [PATCH] FIX: Ensure FS python is included --- Dockerfile | 2 +- minimized.txt | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index e9466fe..8fa1081 100644 --- a/Dockerfile +++ b/Dockerfile @@ -35,6 +35,6 @@ RUN apk update && \ COPY minimized.txt /usr/local/etc/freesurfer-includes.txt WORKDIR /opt RUN curl -SL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/infant/freesurfer-linux-centos7_x86_64-infant-dev-4a14499.tar.gz -o freesurfer.tar.gz \ - && tar -xzvf freesurfer.tar.gz -T /usr/local/etc/freesurfer-includes.txt \ + && tar -xzvf freesurfer.tar.gz -h --hard-dereference -T /usr/local/etc/freesurfer-includes.txt \ && rm freesurfer.tar.gz diff --git a/minimized.txt b/minimized.txt index 72ddf18..258ea2b 100644 --- a/minimized.txt +++ b/minimized.txt @@ -137,6 +137,8 @@ freesurfer/bin/set_infant_recon_params.csh freesurfer/lib/bem/ic4.tri freesurfer/lib/bem/ic7.tri freesurfer/lib/vtk +freesurfer/python/bin/python3.6 +freesurfer/python/bin/python3 freesurfer/python/lib/libcrypto.so.10 freesurfer/python/lib/liblzma.so.0 freesurfer/python/lib/libssl.so.10