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AutDeNovo assembly: BLAST fail #9

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augustinaloewenstein opened this issue May 14, 2024 · 0 comments
Open

AutDeNovo assembly: BLAST fail #9

augustinaloewenstein opened this issue May 14, 2024 · 0 comments

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@augustinaloewenstein
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augustinaloewenstein commented May 14, 2024

Hey Martin,

the BLASTing of my assemblies did not work, the log file showed this error:
=>> PBS: job killed: mem 109274780kb exceeded limit 104857600kb

If I understand this correctly, the BLASTing ran out of memory?
We had a similar problem when we did the first assembly, but you caught it and changed the memory's usage.
Could you explain what you changed where?

Thank you,
best wishes
Augustina

@augustinaloewenstein augustinaloewenstein changed the title AutDeN AutDeNovo assembly: BLAST fail May 14, 2024
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